Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 20 of 182
Found at i:7129606 original size:8 final size:8
Alignment explanation
Indices: 7129590--7129643 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
7129580 GAATTTACTT
7129590 ATTATATA
1 ATTATATA
*
7129598 ATTAAATA
1 ATTATATA
7129606 ATTATATA
1 ATTATATA
7129614 A--AGTA-A
1 ATTA-TATA
7129620 ATTATATTAA
1 ATTATA-T-A
7129630 ATTATATA
1 ATTATATA
7129638 ATTATA
1 ATTATA
7129644 ATATATTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
6 3 0.08
7 4 0.11
8 23 0.61
9 1 0.03
10 7 0.18
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
ATTATATA
Found at i:7134412 original size:10 final size:10
Alignment explanation
Indices: 7134383--7134416 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7134373 TTCTTTAGCC
7134383 ATTTAATTTT
1 ATTTAATTTT
7134393 ATTTCAATTTT
1 ATTT-AATTTT
*
7134404 ATTTTATTTT
1 ATTTAATTTT
7134414 ATT
1 ATT
7134417 ATTTATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTAATTTT
Found at i:7139538 original size:12 final size:11
Alignment explanation
Indices: 7139502--7139553 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
7139492 CTATTTTTTA
7139502 TTTATTTTAAT
1 TTTATTTTAAT
* **
7139513 TTTCTTTTTCT
1 TTTATTTTAAT
7139524 TTTGATTTTAAT
1 TTT-ATTTTAAT
*
7139536 TTTCATTTCAAT
1 TTT-ATTTTAAT
7139548 TTTATT
1 TTTATT
7139554 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
11 14 0.44
12 18 0.56
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (11 bp):
TTTATTTTAAT
Found at i:7146507 original size:21 final size:20
Alignment explanation
Indices: 7146483--7146541 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
7146473 TGTATATATA
7146483 TAAATTTACTTATTATATAAG
1 TAAATTTA-TTATTATATAAG
*
7146504 TAAA-TAATTA-TATA-AAG
1 TAAATTTATTATTATATAAG
7146521 TAAATTATATTACTTATATAA
1 TAAATT-TATTA-TTATATAA
7146542 TTATAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 7 0.23
18 5 0.16
19 7 0.23
20 2 0.06
21 8 0.26
22 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (20 bp):
TAAATTTATTATTATATAAG
Found at i:7146515 original size:16 final size:17
Alignment explanation
Indices: 7146494--7146525 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7146484 AAATTTACTT
7146494 ATTATAT-AAGTAAATA
1 ATTATATAAAGTAAATA
7146510 ATTATATAAAGTAAAT
1 ATTATATAAAGTAAAT
7146526 TATATTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTATATAAAGTAAATA
Found at i:7147949 original size:31 final size:31
Alignment explanation
Indices: 7147911--7147972 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
7147901 CGTCTCGAGC
7147911 TCCATCTCATCTTTTACGTCAAATAGCTCAT
1 TCCATCTCATCTTTTACGTCAAATAGCTCAT
*
7147942 TCCATCTCATCTTTTATGTCAAATAGCTCAT
1 TCCATCTCATCTTTTACGTCAAATAGCTCAT
7147973 ACTTAAAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.27, G:0.06, T:0.40
Consensus pattern (31 bp):
TCCATCTCATCTTTTACGTCAAATAGCTCAT
Found at i:7157303 original size:31 final size:31
Alignment explanation
Indices: 7157263--7157402 Score: 221
Period size: 31 Copynumber: 4.5 Consensus size: 31
7157253 TTTTATGCAA
* *
7157263 AGCTACCACTATTCGCTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
7157294 TA-CTACCAC-TTTCACTGATCAGGTAGCCGG
1 -AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
7157324 AGCTACCACTTTTCACTGATCAGGTAGTCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
7157355 AGCTACCACTTTTCACTGATCAGGTAGCCGA
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
7157386 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
7157403 TGTCATTTGT
Statistics
Matches: 101, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
29 1 0.01
30 26 0.26
31 73 0.72
32 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCCGG
Found at i:7157949 original size:23 final size:24
Alignment explanation
Indices: 7157915--7157963 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7157905 CCATAAAAAA
*
7157915 TTCATAATTTTTGGTTGGGGCAAT
1 TTCATAATTTTTGGTTGGGCCAAT
7157939 TTCATAATTTTTGGTTGGGCCAAT
1 TTCATAATTTTTGGTTGGGCCAAT
7157963 T
1 T
7157964 AATACAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.22, T:0.47
Consensus pattern (24 bp):
TTCATAATTTTTGGTTGGGCCAAT
Found at i:7164610 original size:16 final size:16
Alignment explanation
Indices: 7164591--7164633 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
7164581 AAATAATAAA
*
7164591 AAACCTTAAAATAC-AT
1 AAACC-TAAAAAACTAT
*
7164607 AAACCCAAAAAACTAT
1 AAACCTAAAAAACTAT
7164623 AAACCTAAAAA
1 AAACCTAAAAA
7164634 CCAAACCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16
Consensus pattern (16 bp):
AAACCTAAAAAACTAT
Found at i:7164645 original size:20 final size:20
Alignment explanation
Indices: 7164622--7164665 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7164612 CAAAAAACTA
*
7164622 TAAACCTAA-AAACCAAACCC
1 TAAACC-AAGAAAACAAACCC
7164642 TAAACCAAGAAAACAAACCC
1 TAAACCAAGAAAACAAACCC
7164662 TAAA
1 TAAA
7164666 AACTCTTCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.59, C:0.30, G:0.02, T:0.09
Consensus pattern (20 bp):
TAAACCAAGAAAACAAACCC
Found at i:7167093 original size:45 final size:45
Alignment explanation
Indices: 7167029--7167122 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
7167019 ATGTGGTAGG
*
7167029 TCATCGTTGCCGGGCAATCCAGGATGACATAAATGAATTAAGAAA
1 TCATCATTGCCGGGCAATCCAGGATGACATAAATGAATTAAGAAA
*
7167074 TCATCATTGCCGGGTAATCCAGGATGACATAAATGAATTAAGAAA
1 TCATCATTGCCGGGCAATCCAGGATGACATAAATGAATTAAGAAA
7167119 TCAT
1 TCAT
7167123 TGTGGTGGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (45 bp):
TCATCATTGCCGGGCAATCCAGGATGACATAAATGAATTAAGAAA
Found at i:7169404 original size:46 final size:46
Alignment explanation
Indices: 7169351--7169444 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
7169341 AGAATATTTC
7169351 TTACCACTTAATAAATCAAAACAGAGATAAACCAAAATAGATCATA
1 TTACCACTTAATAAATCAAAACAGAGATAAACCAAAATAGATCATA
7169397 TTACCACTTAATAAATCAAAACAGAGATAAACCAAAATAGATCATA
1 TTACCACTTAATAAATCAAAACAGAGATAAACCAAAATAGATCATA
7169443 TT
1 TT
7169445 CTTAAGTTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.53, C:0.17, G:0.06, T:0.23
Consensus pattern (46 bp):
TTACCACTTAATAAATCAAAACAGAGATAAACCAAAATAGATCATA
Found at i:7172694 original size:6 final size:6
Alignment explanation
Indices: 7172685--7172709 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7172675 ATATCCAGTA
7172685 CCTCTC CCTCTC CCTCTC CCTCTC C
1 CCTCTC CCTCTC CCTCTC CCTCTC C
7172710 ATCCATCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CCTCTC
Found at i:7172716 original size:4 final size:4
Alignment explanation
Indices: 7172707--7172731 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7172697 CCTCTCCCTC
7172707 TCCA TCCA TCCA TCCA TCCA TCCA T
1 TCCA TCCA TCCA TCCA TCCA TCCA T
7172732 ATATATCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.48, G:0.00, T:0.28
Consensus pattern (4 bp):
TCCA
Found at i:7173080 original size:118 final size:117
Alignment explanation
Indices: 7172872--7173108 Score: 354
Period size: 118 Copynumber: 2.0 Consensus size: 117
7172862 TCTCTTAGAG
*** *
7172872 GCATATTAACTCTAAGGCTTTGCTTGGTAAGGTGAAAAATTTTTTGGAAAAATGGAAAACTAAAG
1 GCATATTAACTCTAAGGCTTTGCTTGGTAAGGTGAAAAATAAATTGGAAAAACGGAAAACTAAAG
7172937 GGGGAGAAAAATAGAAAGATAGAAAAAAAATACTATTTTATT-TTCATTGGCAT
66 GGGGAGAAAAATAGAAAGATAGAAAAAAAATACT-TTTT-TTCTTCATTGGCAT
* *
7172990 GCATATTAACTTTAAGGCTTTGCTTGGTAAGGTGAAAAGA-AAATTGGAAAAACGGAAAATTAAA
1 GCATATTAACTCTAAGGCTTTGCTTGGTAAGGTGAAAA-ATAAATTGGAAAAACGGAAAACTAAA
*
7173054 -GGGGAGAAACATAGAAAGATAGGAAAAAAAATACTTTTTTTCTTCATTGGCAT
65 GGGGGAGAAAAATAGAAAGATA-GAAAAAAAATACTTTTTTTCTTCATTGGCAT
7173107 GC
1 GC
7173109 TTAGTAGGAA
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
116 2 0.02
117 37 0.34
118 69 0.63
119 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (117 bp):
GCATATTAACTCTAAGGCTTTGCTTGGTAAGGTGAAAAATAAATTGGAAAAACGGAAAACTAAAG
GGGGAGAAAAATAGAAAGATAGAAAAAAAATACTTTTTTTCTTCATTGGCAT
Found at i:7177356 original size:3 final size:3
Alignment explanation
Indices: 7177348--7177377 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7177338 AGGAAGGAAG
7177348 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7177378 AACAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7182129 original size:27 final size:27
Alignment explanation
Indices: 7182097--7182148 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7182087 AACAAAAATT
*
7182097 GAGAGAATTGAAATTTTAGAGAGAACA
1 GAGAGAATTGAAAGTTTAGAGAGAACA
7182124 GAGAGAATTGAAAGTTTAGAGAGAA
1 GAGAGAATTGAAAGTTTAGAGAGAA
7182149 AAGAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (27 bp):
GAGAGAATTGAAAGTTTAGAGAGAACA
Found at i:7182755 original size:13 final size:12
Alignment explanation
Indices: 7182729--7182767 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
7182719 AAAAATTCAT
7182729 AAAATTTATAAA
1 AAAATTTATAAA
7182741 AAAATTTATTAAA
1 AAAATTTA-TAAA
*
7182754 AATATTT-TAAA
1 AAAATTTATAAA
7182765 AAA
1 AAA
7182768 TTTTTTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 6 0.25
12 8 0.33
13 10 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAATTTATAAA
Found at i:7182768 original size:12 final size:13
Alignment explanation
Indices: 7182732--7182784 Score: 56
Period size: 12 Copynumber: 4.1 Consensus size: 13
7182722 AATTCATAAA
7182732 ATTTATAAAAAA-
1 ATTTATAAAAAAT
*
7182744 ATTTATTAAAAAT
1 ATTTATAAAAAAT
7182757 ATTT-TAAAAAATT
1 ATTTATAAAAAA-T
*
7182770 TTTTATCAAAAAAT
1 ATTTAT-AAAAAAT
7182784 A
1 A
7182785 ACAATACTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 17 0.52
13 8 0.24
14 2 0.06
15 6 0.18
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTTATAAAAAAT
Found at i:7184550 original size:131 final size:131
Alignment explanation
Indices: 7184381--7184641 Score: 434
Period size: 131 Copynumber: 2.0 Consensus size: 131
7184371 AATTTAGAGA
*
7184381 ACATGAGTGAAATTCTAAAGGAATATTCGATTAATTTGAACAAACGGTAAATTGCAACCCAGCAC
1 ACATGAGTGAAATTCTAAAGGAATATTCGATTAATTTGAACAAACGGGAAATTGCAACCCAGCAC
*
7184446 GATAGGACATGATTCCCCGAATGGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAA
66 GATAGGACACGATTCCCCGAATGGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAA
7184511 G
131 G
* *
7184512 ACATGAGTGAAATT-TCAAAGGAATATTGGATTATTTTGAACAAACGGGAAATTGCAACCCAGCA
1 ACATGAGTGAAATTCT-AAAGGAATATTCGATTAATTTGAACAAACGGGAAATTGCAACCCAGCA
* * * *
7184576 CGTTAGGGCACGATTCCCCGAATGGCCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAA
65 CGATAGGACACGATTCCCCGAATGGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAA
7184641 A
130 A
7184642 TGAATAATTA
Statistics
Matches: 121, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
130 1 0.01
131 120 0.99
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (131 bp):
ACATGAGTGAAATTCTAAAGGAATATTCGATTAATTTGAACAAACGGGAAATTGCAACCCAGCAC
GATAGGACACGATTCCCCGAATGGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAA
G
Found at i:7185666 original size:172 final size:171
Alignment explanation
Indices: 7185360--7185702 Score: 596
Period size: 172 Copynumber: 2.0 Consensus size: 171
7185350 AATTCAATTC
7185360 GGGACTAATTTAAAATCACTACGAATTCTTAGTAAATTTCAAAATTCATACTACATACCGTTACC
1 GGGACTAATTTAAAATCACTACGAATTCTTAGTAAATTTCAAAATTCATACTACATACCGTTACC
* * *
7185425 AACCATAATTTACTCATTTCATCAATACTTCTATAACCTAAATGACTCTTATAAAACGTCCTAGG
66 AACCATAATTTACTCATTTCATCAATACTTCTACAACCTAAATGACTCTCATAAAACATCCTAGG
7185490 TACATGCCATTATCAATACTCAACATACTTTACCTTAATGA
131 TACATGCCATTATCAATACTCAACATACTTTACCTTAATGA
* * *
7185531 NGGGACTAATTTAGAATCACTACGAATTCTTAGTAAATTTCACAATTCATACTACATACCGTTGC
1 -GGGACTAATTTAAAATCACTACGAATTCTTAGTAAATTTCAAAATTCATACTACATACCGTTAC
* * *
7185596 CAACCATAATTTACTCATTTCATCAATACTTTTACAACCTAAATGACTCTCATTAAACATCCTGG
65 CAACCATAATTTACTCATTTCATCAATACTTCTACAACCTAAATGACTCTCATAAAACATCCTAG
7185661 GTACATGCCATTATCAATACTCAACATACTTTACCTTAATGA
130 GTACATGCCATTATCAATACTCAACATACTTTACCTTAATGA
7185703 ATTCGGGATC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
172 162 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (171 bp):
GGGACTAATTTAAAATCACTACGAATTCTTAGTAAATTTCAAAATTCATACTACATACCGTTACC
AACCATAATTTACTCATTTCATCAATACTTCTACAACCTAAATGACTCTCATAAAACATCCTAGG
TACATGCCATTATCAATACTCAACATACTTTACCTTAATGA
Found at i:7189591 original size:34 final size:34
Alignment explanation
Indices: 7189486--7189591 Score: 135
Period size: 34 Copynumber: 3.1 Consensus size: 34
7189476 GGGTTTAAAA
* *
7189486 TTTTTAA-AAAAATAATTAAATTAGGTTTTAAGGG
1 TTTTTAAGAAAATTAATTAAATTAGGATTT-AGGG
* **
7189520 -TTTTAAGTAAATTAATTAAATTAAAATTTAGGG
1 TTTTTAAGAAAATTAATTAAATTAGGATTTAGGG
*
7189553 TTTTTAAGAAAATTAATTAAATTAGGGTTTAGGG
1 TTTTTAAGAAAATTAATTAAATTAGGATTTAGGG
7189587 TTTTT
1 TTTTT
7189592 TAAAAATAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
33 10 0.16
34 51 0.84
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (34 bp):
TTTTTAAGAAAATTAATTAAATTAGGATTTAGGG
Found at i:7190060 original size:125 final size:125
Alignment explanation
Indices: 7189685--7190203 Score: 686
Period size: 125 Copynumber: 4.2 Consensus size: 125
7189675 GATTTTGTTT
* * * *
7189685 TTTTTCTACAGTAGTTTCTGAAAAATTAATTATGAGAAGACAATTCTAAAAAAATAGTGA-CAAA
1 TTTTTCTACAGTAGTTCCTGAAAAA-TAATTTTGAGAAGACGATTCTAAAAAAATAAT-ATCAAA
* ** * *
7189749 AACACTTCAAGCAGGATACACTATCAACAAAAGTACTG-AAAAAGCTCCCACGTGGATGCTC
64 AACACTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * * * *
7189810 TTTTTCTACAGTAGTTTCTAAAAAATAATTTTGAGAAGATGGTTCT-GAAAAA-AATGTCAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAATATCAAAAA
* * *
7189873 CACTTCAAGCAGTATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
66 CACTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * * *
7189933 TTTTTATACAGTAGTTCCTGAAAAATAATTTTGAGAAGGCGGTTTTGAAAAAATAATATCAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAATATCAAAAA
* * * * *
7189998 CGCTTCAAACATGATGCACTGTTAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
66 CACTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * *
7190058 TTTTTCTACAGTATTTCCTAAAAATATAATTTTGAGAAGACGATTCTAAAAAAATAGTATCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAA-ATAATTTTGAGAAGACGATTCTAAAAAAATAATATCAAAA
*
7190123 ACGCTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
65 ACACTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
*
7190184 TTTTTCTATAGTAGTTCCTG
1 TTTTTCTACAGTAGTTCCTG
7190204 CTTGGCCTTA
Statistics
Matches: 346, Mismatches: 43, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
122 38 0.11
123 68 0.20
124 22 0.06
125 109 0.32
126 109 0.32
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAATATCAAAAA
CACTTCAAGCAGGATGCACTATCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:7195073 original size:18 final size:18
Alignment explanation
Indices: 7195033--7195075 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7195023 GACTGGGAAA
* *
7195033 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
7195051 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
7195069 CGGATAC
1 AGGATAC
7195076 GCATCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:7195599 original size:7 final size:7
Alignment explanation
Indices: 7195589--7195614 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7195579 TTATATACAT
7195589 AATACTA
1 AATACTA
7195596 AATACTA
1 AATACTA
7195603 AATACTA
1 AATACTA
7195610 AATAC
1 AATAC
7195615 AAAACAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:7200670 original size:41 final size:37
Alignment explanation
Indices: 7200575--7200680 Score: 95
Period size: 41 Copynumber: 2.8 Consensus size: 37
7200565 TTCAAAATAA
* *
7200575 TAAATTGACACCCAATGTCTCATCGGCTAAACCGAAG
1 TAAATTGACACCCAGTGTCTCATCGACTAAACCGAAG
* * * * *
7200612 TAAACTGGCACCTAGTGTCTCATCGAATTAATCCGAAGTAG
1 TAAATTGACACCCAGTGTCTCATCG-ACTAAACCG-A--AG
* *
7200653 TAAATTGACACCCAGTGTTTCATGGACT
1 TAAATTGACACCCAGTGTCTCATCGACT
7200681 TGAAGTTGAA
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
37 21 0.40
38 6 0.12
39 1 0.02
40 2 0.04
41 22 0.42
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (37 bp):
TAAATTGACACCCAGTGTCTCATCGACTAAACCGAAG
Found at i:7200881 original size:24 final size:24
Alignment explanation
Indices: 7200837--7200882 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
7200827 ATATATACCA
7200837 ATTCAATCAATATAAATTCAATAT
1 ATTCAATCAATATAAATTCAATAT
7200861 ATTC-ATCACATACTAAA-TCAAT
1 ATTCAATCA-ATA-TAAATTCAAT
7200883 CCATTTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 12 0.60
25 4 0.20
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (24 bp):
ATTCAATCAATATAAATTCAATAT
Found at i:7201650 original size:25 final size:21
Alignment explanation
Indices: 7201621--7201675 Score: 56
Period size: 25 Copynumber: 2.4 Consensus size: 21
7201611 CTTATTTTAT
7201621 TATTATAATGTAATATATACTTAA
1 TATTATAATGTAATAT-TA--TAA
* *
7201645 TAATTAAAATTTAATATTATAA
1 T-ATTATAATGTAATATTATAA
7201667 TATTATAAT
1 TATTATAAT
7201676 ATATATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.26
22 4 0.15
24 3 0.11
25 13 0.48
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TATTATAATGTAATATTATAA
Found at i:7208563 original size:47 final size:47
Alignment explanation
Indices: 7208505--7209172 Score: 234
Period size: 47 Copynumber: 15.3 Consensus size: 47
7208495 AAAGTGTATA
* *
7208505 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7208552 TATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7208599 TATATATGTGATAAGGCCTAATGGCCGATGTGA--ATATGT----GTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTG
* * * * * *
7208641 -ATA-A-G-GCCTAATAGCC-GAT-G-TGATGAATG-TGAAAGT----GTA
1 TATATACGTG-ATAA-GGCCTAATGGCCGATG--TGATGAATGTGAAAGTG
* *
7208680 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7208727 TATATATGTGATAAGGCCTAATGGCCGATGTGA--ATATGT----GTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTG
* * * * * *
7208769 -ATA-A-G-GCCTAATAGCC-GAT-G-TGATGAATG-TGAAAGT----GTA
1 TATATACGTG-ATAA-GGCCTAATGGCCGATG--TGATGAATGTGAAAGTG
* *
7208808 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7208855 TATATATGTGATAAGGCCTAATGGCCGATGTGA--ATATGT----GTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTG
* * * * * *
7208897 -ATA-A-G-GCCTAATAGCC-GAT-G-TGATGAATG-TGAAAGT----GTA
1 TATATACGTG-ATAA-GGCCTAATGGCCGATG--TGATGAATGTGAAAGTG
* *
7208936 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7208983 TATATATGTGATAAGGCCTAATGGCCGATGTGA--ATATGT----GTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTG
* * * * * **
7209025 -ATA-A-G-GCCTAATAGCC-GAT-G-TGATG-AATG--TGAAAAAGTG
1 TATATACGTG-ATAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
7209064 TATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
7209111 TATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
7209158 CATAAATGTGATAAG
1 TATATACGTGATAAG
7209173 TCCCGAAGGG
Statistics
Matches: 470, Mismatches: 75, Indels: 152
0.67 0.11 0.22
Matches are distributed among these distances:
35 2 0.00
36 1 0.00
37 16 0.03
38 8 0.02
39 48 0.10
40 31 0.07
41 23 0.05
42 42 0.09
43 26 0.06
44 16 0.03
45 7 0.01
46 16 0.03
47 234 0.50
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:7208643 original size:32 final size:32
Alignment explanation
Indices: 7208600--7208663 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
7208590 GTGAAAGTGT
*
7208600 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
*
7208632 ATATGTGTGATAAGGCCTAATAGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
7208664 TGAATGTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (32 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGA
Found at i:7208684 original size:79 final size:80
Alignment explanation
Indices: 7208553--7208712 Score: 277
Period size: 79 Copynumber: 2.0 Consensus size: 80
7208543 GTGAAAGTGT
*
7208553 ATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATGCGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
7208617 TAATGGCCGATGTGA
66 TAATGGCCGATGTGA
*
7208632 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATGCGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
*
7208697 TTAATGGCCGATGTGA
65 CTAATGGCCGATGTGA
7208713 TGAATGTGAA
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
79 44 0.58
81 32 0.42
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (80 bp):
ATATGCGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
TAATGGCCGATGTGA
Found at i:7208692 original size:49 final size:47
Alignment explanation
Indices: 7208632--7208759 Score: 211
Period size: 49 Copynumber: 2.7 Consensus size: 47
7208622 GCCGATGTGA
* *
7208632 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
7208681 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
7208728 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGA
7208760 ATATGTGTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 32 0.43
49 43 0.57
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:7208771 original size:32 final size:32
Alignment explanation
Indices: 7208728--7208791 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
7208718 GTGAAAGTGT
*
7208728 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
*
7208760 ATATGTGTGATAAGGCCTAATAGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
7208792 TGAATGTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (32 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGA
Found at i:7208786 original size:79 final size:80
Alignment explanation
Indices: 7208681--7208840 Score: 268
Period size: 79 Copynumber: 2.0 Consensus size: 80
7208671 GAAAGTGTAT
* *
7208681 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
7208745 TAATGGCCGATGTGA
66 TAATGGCCGATGTGA
*
7208760 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
*
7208825 TTAATGGCCGATGTGA
65 CTAATGGCCGATGTGA
7208841 TGAATGTGAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 43 0.57
81 32 0.43
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (80 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
TAATGGCCGATGTGA
Found at i:7208820 original size:49 final size:47
Alignment explanation
Indices: 7208760--7208887 Score: 211
Period size: 49 Copynumber: 2.7 Consensus size: 47
7208750 GCCGATGTGA
* *
7208760 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
7208809 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
7208856 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGA
7208888 ATATGTGTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 32 0.43
49 43 0.57
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:7208861 original size:175 final size:173
Alignment explanation
Indices: 7208490--7209118 Score: 525
Period size: 175 Copynumber: 3.7 Consensus size: 173
7208480 TTAAACCCAT
7208490 ATGTGAAAGTGTATATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG---ATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
7208555 ATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
63 ATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGAT-AGGCATAA
** *
7208620 TGGCCGATGTGAATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
127 TGGAAGATGTGAATATATGTGATAAGGCCTAATAGCCGATGTGATGA
7208667 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
7208732 ATGTGATAAGGCCTAATGGCCGATGTGAAT-ATGTGTGATAAG-GCCTA-ATA-GCCGAT-GTG-
65 ACGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGA-AAGTG--TATATATG-CGATAG-GC
* *
7208791 ATGAATGTGAA-A-GTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
123 AT-AATG-GAAGATGTG-A-ATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
7208844 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGA--TG-TGAA--T---A-TG----T-
1 ATGTGAAAGTGATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
7208894 -GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
66 CGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGCGAT-AGGCATAAT
** * *
7208958 GGCCGATGTG-ATGA-ATGTGA-AAGTG--TATATATG-TGATAAG-GCCT-A
128 GGAAGATGTGAAT-ATATGTGATAAG-GCCTA-ATA-GCCGAT--GTG-ATGA
* * * * *
7209003 ATG-GCCGATGTGA-ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAAGTGTA
1 ATGTG--AAAGTGATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTG--AAAGTGTA
* *
7209066 TATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62 TATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
7209119 TGACAGGGCC
Statistics
Matches: 377, Mismatches: 28, Indels: 96
0.75 0.06 0.19
Matches are distributed among these distances:
157 2 0.01
158 12 0.03
159 25 0.07
160 64 0.17
161 7 0.02
162 8 0.02
163 4 0.01
165 1 0.00
166 2 0.01
167 1 0.00
170 2 0.01
171 2 0.01
172 4 0.01
173 2 0.01
175 121 0.32
176 16 0.04
177 102 0.27
178 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (173 bp):
ATGTGAAAGTGATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
CGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAGGCATAATGGA
AGATGTGAATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:7208899 original size:32 final size:32
Alignment explanation
Indices: 7208856--7208919 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
7208846 GTGAAAGTGT
*
7208856 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
*
7208888 ATATGTGTGATAAGGCCTAATAGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
7208920 TGAATGTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (32 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGA
Found at i:7208914 original size:79 final size:80
Alignment explanation
Indices: 7208809--7208968 Score: 268
Period size: 79 Copynumber: 2.0 Consensus size: 80
7208799 GAAAGTGTAT
* *
7208809 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
7208873 TAATGGCCGATGTGA
66 TAATGGCCGATGTGA
*
7208888 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
*
7208953 TTAATGGCCGATGTGA
65 CTAATGGCCGATGTGA
7208969 TGAATGTGAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 43 0.57
81 32 0.43
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (80 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
TAATGGCCGATGTGA
Found at i:7208948 original size:49 final size:47
Alignment explanation
Indices: 7208888--7209015 Score: 211
Period size: 49 Copynumber: 2.7 Consensus size: 47
7208878 GCCGATGTGA
* *
7208888 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
7208937 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
7208984 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGA
7209016 ATATGTGTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 32 0.43
49 43 0.57
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:7209027 original size:32 final size:32
Alignment explanation
Indices: 7208984--7209047 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
7208974 GTGAAAGTGT
*
7208984 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
*
7209016 ATATGTGTGATAAGGCCTAATAGCCGATGTGA
1 ATATATGTGATAAGGCCTAATAGCCGATGTGA
7209048 TGAATGTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (32 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGA
Found at i:7209042 original size:79 final size:80
Alignment explanation
Indices: 7208937--7209096 Score: 250
Period size: 79 Copynumber: 2.0 Consensus size: 80
7208927 GAAAGTGTAT
* * *
7208937 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTG-AAAGTGTATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATACGTGATAAGGCC
7209001 TAATGGCCGATGTGA
66 TAATGGCCGATGTGA
* *
7209016 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAAGTGTATATGCGTGATAAGGC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAAAGTGTATATACGTGATAAGGC
*
7209081 TTAATGGCCGATGTGA
65 CTAATGGCCGATGTGA
7209097 TGAATGTGAA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
79 37 0.51
81 36 0.49
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (80 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATACGTGATAAGGCC
TAATGGCCGATGTGA
Found at i:7209143 original size:128 final size:128
Alignment explanation
Indices: 7208506--7209121 Score: 1119
Period size: 128 Copynumber: 4.8 Consensus size: 128
7208496 AAGTGTATAT
* * * **
7208506 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGCGTGATAAGGC
1 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
7208569 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
7208632 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
7208697 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
7208760 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
7208825 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
7208888 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
7208953 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
** * **
7209016 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAAGTGTATATGCGTGATAAGGC
1 ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
7209081 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
7209122 CAGGGCCGAG
Statistics
Matches: 477, Mismatches: 11, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
126 43 0.09
128 434 0.91
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (128 bp):
ATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
TTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:7209348 original size:37 final size:37
Alignment explanation
Indices: 7209293--7209368 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
7209283 GAGTTCTAAG
* * * *
7209293 GACCCGATGACTATGTGTGGGGATTTTGTCTGGGTAA
1 GACCCGATAACTATGTGTGGAGATTATGTCCGGGTAA
7209330 GACCCGATAACT-TCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTAT-GTGTGGAGATTATGTCCGGGTAA
7209367 GA
1 GA
7209369 TTTCGTAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 1 0.03
37 33 0.97
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (37 bp):
GACCCGATAACTATGTGTGGAGATTATGTCCGGGTAA
Found at i:7212483 original size:29 final size:29
Alignment explanation
Indices: 7212448--7212521 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
7212438 GTTGTGAGAT
* *
7212448 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
7212477 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
7212506 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
7212522 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:7212857 original size:40 final size:39
Alignment explanation
Indices: 7212813--7213080 Score: 236
Period size: 40 Copynumber: 6.7 Consensus size: 39
7212803 CATTTGAATG
*
7212813 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGA-T
* * * *
7212853 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGC-TAGTGAT
* *
7212893 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAT
** * *
7212933 ATATCCGGGCTAAAACCCGAAGGC-ATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GTGCTAGTGA-T
* * * * *
7212973 AAATCCGGGCTAAATTCCGAAGAGC-ATTCATGCTAGCGAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATT-GTGCTAGTGAT
* **
7213013 GTATCCGGGCTAAGTTTCGAAGAGC-ATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATT-GTGCTAGTGAT
* *
7213053 ATATCCGTGCTAAATCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
7213081 CATGCTGGTG
Statistics
Matches: 193, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
39 7 0.04
40 169 0.88
41 17 0.09
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGAT
Found at i:7213018 original size:80 final size:79
Alignment explanation
Indices: 7212813--7213091 Score: 280
Period size: 80 Copynumber: 3.5 Consensus size: 79
7212803 CATTTGAATG
* *
7212813 ATATCCGGGCTAAGTCCCGAAGGCAATTGA-GCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCAATTCATGCTAGTGA-TATATCCGGGCTAAGACCCGAAGGC
* *
7212877 ATTTGTGCGAATTGAT
65 ATTCGTGCGAGTT-AT
* * *
7212893 ATATCCGGGCTAAGA-CCCGAAGGCAATT-GTGCAAGTTGATATATCCGGGCTAAAACCCGAAGG
1 ATATCCGGGCTAA-ATCCCGAAGGCAATTCATGCTAG-TGATATATCCGGGCTAAGACCCGAAGG
*
7212956 CATTGGTGCGAGTTACT
64 CATTCGTGCGAGTTA-T
* * * * ***
7212973 AAATCCGGGCTAAATTCCGAAGAGC-ATTCATGCTAGCGATGTATCCGGGCTAAGTTTCGAAGAG
1 ATATCCGGGCTAAATCCCGAAG-GCAATTCATGCTAGTGATATATCCGGGCTAAGACCCGAAG-G
* *
7213037 CATTCGTGCTAGTGAT
64 CATTCGTGCGAGTTAT
* *
7213053 ATATCCGTGCTAAATCCCGAAGAGCAA-TCATGCTGGTGA
1 ATATCCGGGCTAAATCCCGAAG-GCAATTCATGCTAGTGA
7213092 CGTGTATTCG
Statistics
Matches: 166, Mismatches: 24, Indels: 18
0.80 0.12 0.09
Matches are distributed among these distances:
79 2 0.01
80 140 0.84
81 24 0.14
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAATCCCGAAGGCAATTCATGCTAGTGATATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTAT
Found at i:7216547 original size:47 final size:47
Alignment explanation
Indices: 7216490--7216694 Score: 293
Period size: 47 Copynumber: 4.3 Consensus size: 47
7216480 AAAGTGTATA
7216490 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
7216537 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
7216584 TATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
7216633 TATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
7216680 CATAAATGTGATAAG
1 TATATATGTGATAAG
7216695 TCCCGAAGGG
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
47 96 0.69
49 44 0.31
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:7216615 original size:96 final size:96
Alignment explanation
Indices: 7216475--7216694 Score: 318
Period size: 96 Copynumber: 2.3 Consensus size: 96
7216465 TTAAACCCAT
7216475 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
7216540 ATGTGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGACAAGGCCGAATAGCCAATGTGATGA
*
7216573 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
7216638 ATGTGACAGGGCCGAGTGGCCAATGTGATGG
66 ATGTGACAAGGCCGAATAGCCAATGTGATGA
*
7216669 ATGTGAAAGTGCATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
7216695 TCCCGAAGGG
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 10 0.09
95 1 0.01
96 90 0.80
98 11 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGACAAGGCCGAATAGCCAATGTGATGA
Found at i:7216869 original size:37 final size:37
Alignment explanation
Indices: 7216815--7216890 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
7216805 GAGTTCTAAG
* * *
7216815 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
7216852 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
7216889 GA
1 GA
7216891 TTTCGTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Found at i:7221952 original size:26 final size:26
Alignment explanation
Indices: 7221923--7221978 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
7221913 TGATACAAAT
7221923 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7221949 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7221975 TGAT
1 TGAT
7221979 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7223698 original size:27 final size:27
Alignment explanation
Indices: 7223601--7223705 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
7223591 AGGAAGCGTC
*
7223601 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
7223628 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
7223655 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
7223682 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
7223706 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:7232078 original size:6 final size:6
Alignment explanation
Indices: 7232048--7232234 Score: 116
Period size: 6 Copynumber: 30.3 Consensus size: 6
7232038 AAGAAACATT
* * *
7232048 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
7232097 ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATTAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * * *
7232146 TTCAGGTA A-CAGA ATCAGA ATCAAA ACCAGA ATCAGA ATTAGGTA A-CAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
7232196 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
7232235 GTGAATGCAA
Statistics
Matches: 140, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 10 0.07
6 110 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:7232136 original size:25 final size:25
Alignment explanation
Indices: 7232108--7232168 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
7232098 TCAAAATCAA
7232108 AATCAGAATCAGAATT-AGGTAACAG
1 AATCAGAATCAG-ATTCAGGTAACAG
* *
7232133 AATCAGAATTAGTTTCAGGTAACAG
1 AATCAGAATCAGATTCAGGTAACAG
7232158 AATCAGAATCA
1 AATCAGAATCA
7232169 AAACCAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (25 bp):
AATCAGAATCAGATTCAGGTAACAG
Found at i:7232141 original size:43 final size:37
Alignment explanation
Indices: 7232057--7232137 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
7232047 TATCAGAACT
* *
7232057 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
* *
7232094 AGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
7232131 AGAATCA
1 AGAATCA
7232138 GAATTAGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
Found at i:7232158 original size:62 final size:62
Alignment explanation
Indices: 7232069--7232230 Score: 270
Period size: 62 Copynumber: 2.6 Consensus size: 62
7232059 AATCAAAATG
* * * *
7232069 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
* *
7232131 AGAATCAGAATTAGTTTCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
7232193 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
7232231 GAATGTGAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
Found at i:7232203 original size:25 final size:25
Alignment explanation
Indices: 7232173--7232234 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
7232163 GAATCAAAAC
*
7232173 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
7232198 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
7232223 CAGAATCAGAAT
1 CAGAATCAGAAT
7232235 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:7232769 original size:27 final size:27
Alignment explanation
Indices: 7232739--7232938 Score: 170
Period size: 27 Copynumber: 7.1 Consensus size: 27
7232729 ACATCTTAAC
7232739 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
7232766 GGTAAAATGGTAATTCTGTA-AATTGAGGGTCGAG
1 GGTAAAATGGTAATT-T-TATAA---A---TCGAG
* * *
7232800 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
* * *
7232827 GATAAAATAGTGAA-TTTGTAAATCGAG
1 GGTAAAATGGT-AATTTTATAAATCGAG
* *
7232854 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
* *
7232881 GGTAAAATGGTAATTCTATAAATCGGG
1 GGTAAAATGGTAATTTTATAAATCGAG
*** * *
7232908 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
7232935 GGTA
1 GGTA
7232939 TTTCAGTAAT
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.01
27 112 0.77
28 5 0.03
29 2 0.01
30 1 0.01
31 1 0.01
32 1 0.01
33 2 0.01
34 19 0.13
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (27 bp):
GGTAAAATGGTAATTTTATAAATCGAG
Found at i:7232799 original size:34 final size:34
Alignment explanation
Indices: 7232761--7232827 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
7232751 ATTTTATAAA
* *
7232761 TCGAGGGTAAAATGGTAATTCTGTAAATTGAGGG
1 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGGG
7232795 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGG
1 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGG
7232828 ATAAAATAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.28
Consensus pattern (34 bp):
TCGAGGGTAAAATAGTAATTCTGTAAATCGAGGG
Found at i:7232947 original size:27 final size:27
Alignment explanation
Indices: 7232888--7233057 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
7232878 GAGGGTAAAA
* * * * *
7232888 TGGTAATTCTATAAATCGGGGGTACTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
7232915 TGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
** * *
7232942 CAGTAATTTCACAAATC-AGAGGTATTT
1 TGGTAATTTTACAAGTCGAG-GGTATTT
* *
7232969 TGGTAATTTTACGAACT-AAGGGTATTT
1 TGGTAATTTTAC-AAGTCGAGGGTATTT
* * *
7232996 TGGTAATTTTACAA-ACTAGGGGTGTTT
1 TGGTAATTTTACAAGTCGA-GGGTATTT
* *
7233023 TGGTAATTTTATAGGTCGAGGGTATTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
7233050 TGGTAATT
1 TGGTAATT
7233058 CTACCCTACA
Statistics
Matches: 116, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.04
27 104 0.90
28 7 0.06
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTACAAGTCGAGGGTATTT
Found at i:7232948 original size:54 final size:53
Alignment explanation
Indices: 7232888--7233061 Score: 174
Period size: 54 Copynumber: 3.2 Consensus size: 53
7232878 GAGGGTAAAA
*
7232888 TGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTCTACAAATCGGGGGTA-TTTGGTAATTTTACAAGTCGAGGGTATTT
** * * * *
7232942 CAGTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACGAACT-AAGGGTATTT
1 TGGTAATTCT-ACAAATCGGGGGTA-TTTGGTAATTTTAC-AAGTCGAGGGTATTT
* * * *
7232996 TGGTAATTTTACAAACTAGGGGTGT-TTTGGTAATTTTATAGGTCGAGGGTATTT
1 TGGTAATTCTACAAA-TCGGGG-GTATTTGGTAATTTTACAAGTCGAGGGTATTT
7233050 TGGTAATTCTAC
1 TGGTAATTCTAC
7233062 CCTACAGGGG
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
53 3 0.03
54 84 0.88
55 7 0.07
56 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (53 bp):
TGGTAATTCTACAAATCGGGGGTATTTGGTAATTTTACAAGTCGAGGGTATTT
Found at i:7233029 original size:81 final size:81
Alignment explanation
Indices: 7232907--7233057 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
7232897 TATAAATCGG
* *
7232907 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATC-AGAGGTATTTTG
1 GGGTACTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCGAG-GGTATTTTG
7232971 GTAATTTTACGAACTAA
65 GTAATTTTACGAACTAA
* * ** * * **
7232988 GGGTATTTTGGTAATTTTACAAACTAG-GGGTGTTTTGGTAATTTTATAGGTCGAGGGTATTTTG
1 GGGTACTTTGGTAATTTTAC-AACTAGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTG
7233052 GTAATT
65 GTAATT
7233058 CTACCCTACA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
81 52 0.90
82 6 0.10
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (81 bp):
GGGTACTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGG
TAATTTTACGAACTAA
Found at i:7233076 original size:27 final size:27
Alignment explanation
Indices: 7233052--7233121 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
7233042 GGGTATTTTG
*
7233052 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAAGGGCATTTCA
* *
7233079 GTACTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGCATTTCA
* * *
7233106 ATAATGCTAGCCTACA
1 GTAATTCTACCCTACA
7233122 GATATGAGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGCATTTCA
Found at i:7234152 original size:6 final size:6
Alignment explanation
Indices: 7234122--7234308 Score: 116
Period size: 6 Copynumber: 30.3 Consensus size: 6
7234112 AAGAAACATT
* * *
7234122 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
7234171 ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATTAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * * *
7234220 TTCAGGTA A-CAGA ATCAGA ATCAAA ACCAGA ATCAGA ATTAGGTA A-CAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
7234270 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
7234309 GTGAATGCAA
Statistics
Matches: 140, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 10 0.07
6 110 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:7234210 original size:25 final size:25
Alignment explanation
Indices: 7234182--7234242 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
7234172 TCAAAATCAA
7234182 AATCAGAATCAGAATT-AGGTAACAG
1 AATCAGAATCAG-ATTCAGGTAACAG
* *
7234207 AATCAGAATTAGTTTCAGGTAACAG
1 AATCAGAATCAGATTCAGGTAACAG
7234232 AATCAGAATCA
1 AATCAGAATCA
7234243 AAACCAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (25 bp):
AATCAGAATCAGATTCAGGTAACAG
Found at i:7234215 original size:43 final size:37
Alignment explanation
Indices: 7234131--7234211 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
7234121 TATCAGAACT
* *
7234131 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
* *
7234168 AGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
7234205 AGAATCA
1 AGAATCA
7234212 GAATTAGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTGAC
Found at i:7234232 original size:62 final size:62
Alignment explanation
Indices: 7234143--7234304 Score: 270
Period size: 62 Copynumber: 2.6 Consensus size: 62
7234133 AATCAAAATG
* * * *
7234143 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
* *
7234205 AGAATCAGAATTAGTTTCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
7234267 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
7234305 GAATGTGAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAAC
Found at i:7234277 original size:25 final size:25
Alignment explanation
Indices: 7234247--7234308 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
7234237 GAATCAAAAC
*
7234247 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
7234272 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
7234297 CAGAATCAGAAT
1 CAGAATCAGAAT
7234309 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:7234843 original size:27 final size:27
Alignment explanation
Indices: 7234813--7235012 Score: 170
Period size: 27 Copynumber: 7.1 Consensus size: 27
7234803 ACATCTTAAC
7234813 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
7234840 GGTAAAATGGTAATTCTGTA-AATTGAGGGTCGAG
1 GGTAAAATGGTAATT-T-TATAA---A---TCGAG
* * *
7234874 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
* * *
7234901 GATAAAATAGTGAA-TTTGTAAATCGAG
1 GGTAAAATGGT-AATTTTATAAATCGAG
* *
7234928 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
* *
7234955 GGTAAAATGGTAATTCTATAAATCGGG
1 GGTAAAATGGTAATTTTATAAATCGAG
*** * *
7234982 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTAAAATGGTAATTTTATAAATCGAG
7235009 GGTA
1 GGTA
7235013 TTTCAGTAAT
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.01
27 112 0.77
28 5 0.03
29 2 0.01
30 1 0.01
31 1 0.01
32 1 0.01
33 2 0.01
34 19 0.13
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (27 bp):
GGTAAAATGGTAATTTTATAAATCGAG
Found at i:7234873 original size:34 final size:34
Alignment explanation
Indices: 7234835--7234901 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
7234825 ATTTTATAAA
* *
7234835 TCGAGGGTAAAATGGTAATTCTGTAAATTGAGGG
1 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGGG
7234869 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGG
1 TCGAGGGTAAAATAGTAATTCTGTAAATCGAGG
7234902 ATAAAATAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.28
Consensus pattern (34 bp):
TCGAGGGTAAAATAGTAATTCTGTAAATCGAGGG
Found at i:7235021 original size:27 final size:27
Alignment explanation
Indices: 7234962--7235131 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
7234952 GAGGGTAAAA
* * * * *
7234962 TGGTAATTCTATAAATCGGGGGTACTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
7234989 TGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
** * *
7235016 CAGTAATTTCACAAATC-AGAGGTATTT
1 TGGTAATTTTACAAGTCGAG-GGTATTT
* *
7235043 TGGTAATTTTACGAACT-AAGGGTATTT
1 TGGTAATTTTAC-AAGTCGAGGGTATTT
* * *
7235070 TGGTAATTTTACAA-ACTAGGGGTGTTT
1 TGGTAATTTTACAAGTCGA-GGGTATTT
* *
7235097 TGGTAATTTTATAGGTCGAGGGTATTT
1 TGGTAATTTTACAAGTCGAGGGTATTT
7235124 TGGTAATT
1 TGGTAATT
7235132 CTACCCTACA
Statistics
Matches: 116, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.04
27 104 0.90
28 7 0.06
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTACAAGTCGAGGGTATTT
Found at i:7235022 original size:54 final size:53
Alignment explanation
Indices: 7234962--7235135 Score: 174
Period size: 54 Copynumber: 3.2 Consensus size: 53
7234952 GAGGGTAAAA
*
7234962 TGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTCTACAAATCGGGGGTA-TTTGGTAATTTTACAAGTCGAGGGTATTT
** * * * *
7235016 CAGTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACGAACT-AAGGGTATTT
1 TGGTAATTCT-ACAAATCGGGGGTA-TTTGGTAATTTTAC-AAGTCGAGGGTATTT
* * * *
7235070 TGGTAATTTTACAAACTAGGGGTGT-TTTGGTAATTTTATAGGTCGAGGGTATTT
1 TGGTAATTCTACAAA-TCGGGG-GTATTTGGTAATTTTACAAGTCGAGGGTATTT
7235124 TGGTAATTCTAC
1 TGGTAATTCTAC
7235136 CCTACAGGGG
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
53 3 0.03
54 84 0.88
55 7 0.07
56 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (53 bp):
TGGTAATTCTACAAATCGGGGGTATTTGGTAATTTTACAAGTCGAGGGTATTT
Found at i:7235103 original size:81 final size:81
Alignment explanation
Indices: 7234981--7235131 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
7234971 TATAAATCGG
* *
7234981 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATC-AGAGGTATTTTG
1 GGGTACTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCGAG-GGTATTTTG
7235045 GTAATTTTACGAACTAA
65 GTAATTTTACGAACTAA
* * ** * * **
7235062 GGGTATTTTGGTAATTTTACAAACTAG-GGGTGTTTTGGTAATTTTATAGGTCGAGGGTATTTTG
1 GGGTACTTTGGTAATTTTAC-AACTAGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTG
7235126 GTAATT
65 GTAATT
7235132 CTACCCTACA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
81 52 0.90
82 6 0.10
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (81 bp):
GGGTACTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGG
TAATTTTACGAACTAA
Found at i:7235184 original size:27 final size:27
Alignment explanation
Indices: 7235130--7235184 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
7235120 ATTTTGGTAA
* *
7235130 TTCTACCCTACAGGGGCATTTCAGTAC
1 TTCTACCCTACAAGGGCATTTCAATAC
*
7235157 TTCTACCCTACAAGGGTATTTCAATAC
1 TTCTACCCTACAAGGGCATTTCAATAC
7235184 T
1 T
7235185 ACCGCTACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (27 bp):
TTCTACCCTACAAGGGCATTTCAATAC
Found at i:7236250 original size:6 final size:6
Alignment explanation
Indices: 7236220--7236375 Score: 95
Period size: 6 Copynumber: 25.3 Consensus size: 6
7236210 AAGAAACATT
* * *
7236220 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
7236269 ATCAAA ATCAAA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGA ACCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
7236318 ATCAAA ATTAGGT AGCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATCA-GA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
7236368 ATCAGA AT
1 ATCAGA AT
7236376 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 6 0.05
6 93 0.82
7 11 0.10
8 4 0.04
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:7236284 original size:31 final size:31
Alignment explanation
Indices: 7236243--7236375 Score: 135
Period size: 31 Copynumber: 4.3 Consensus size: 31
7236233 TCAAAATGAG
*
7236243 AATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
* * *
7236274 AATCAAAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
* * * * * *
7236305 AATCAGAACCAGAATCA--AAATTAGGTAGCAG
1 AATCAGAATCAGAATCAGGTAA-CA-GAATCAA
*
7236336 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
7236367 AATCAGAAT
1 AATCAGAAT
7236376 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
29 2 0.03
30 1 0.01
31 74 0.93
32 1 0.01
33 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:7236347 original size:37 final size:37
Alignment explanation
Indices: 7236265--7236347 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
7236255 AATCAGGTGA
* * *
7236265 CAGAATCAAAATCAAAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAACCAAAATCAAAATTAGGTAACAGAAT
* *
7236302 CAGAATCAGAACCAGAATCAAAATTAGGTAGCAGAAT
1 CAGAATCAGAACCAAAATCAAAATTAGGTAACAGAAT
7236339 CAGAATCAG
1 CAGAATCAG
7236348 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAACCAAAATCAAAATTAGGTAACAGAAT
Found at i:7236355 original size:25 final size:25
Alignment explanation
Indices: 7236296--7236375 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
7236286 AATTAGGTAA
*
7236296 CAGAATCA-G-AATCAGAACCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
* * *
7236320 CAAAATTAGGTAGCAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
* *
7236345 CAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGGTAACAGAATCAGAAT
7236370 CAGAAT
1 CAGAAT
7236376 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
24 6 0.14
25 37 0.84
26 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:7236542 original size:27 final size:26
Alignment explanation
Indices: 7236494--7236553 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
7236484 GCGAGGCTGT
*
7236494 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
7236521 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
7236547 CAGATAT
1 CAGATAT
7236554 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:7236598 original size:71 final size:67
Alignment explanation
Indices: 7236521--7236658 Score: 195
Period size: 67 Copynumber: 2.0 Consensus size: 67
7236511 TCACCAGATA
* * *
7236521 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
7236586 GGCTGC
62 GGCTGC
* *
7236592 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
7236657 GC
66 GC
7236659 TAGAACACTT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
67 37 0.60
71 25 0.40
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:7236640 original size:27 final size:26
Alignment explanation
Indices: 7236592--7236643 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
7236582 GCGAGGCTGC
*
7236592 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
7236618 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
7236644 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:7236895 original size:27 final size:26
Alignment explanation
Indices: 7236880--7237045 Score: 152
Period size: 27 Copynumber: 6.2 Consensus size: 26
7236870 ACATCCTAGC
7236880 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAATGGTAA-TTTATAAATCGAG
*
7236907 GGTAAAATGGTAATTTTGTAAATCGAG
1 GGTAAAATGGTAA-TTTATAAATCGAG
* * *
7236934 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTAAAATGGTAATT-TATAAATCGAG
* * * *
7236961 GATAAAATAGTGATTTTGTAAATCGAG
1 GGTAAAATGGT-AATTTATAAATCGAG
*** * *
7236988 GGTAAAACAATAATTTTGTATATCGAG
1 GGTAAAATGGTAA-TTTATAAATCGAG
*
7237015 GGTAAAATGGTAATTCTATAAATCGGG
1 GGTAAAATGGTAATT-TATAAATCGAG
7237042 GGTA
1 GGTA
7237046 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
26 5 0.04
27 110 0.93
28 3 0.03
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (26 bp):
GGTAAAATGGTAATTTATAAATCGAG
Found at i:7237058 original size:54 final size:54
Alignment explanation
Indices: 7236880--7237045 Score: 215
Period size: 54 Copynumber: 3.1 Consensus size: 54
7236870 ACATCCTAGC
* *
7236880 GGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
* * * * *
7236934 GGTAAAATAGTAATTCTGTAAATCAAGGATAAAATAGTGATTTTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
* * * * * *
7236988 GGTAAAACAATAATTTTGTATATCGAGGGTAAAATGGTAATTCTATAAATCGGG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
7237042 GGTA
1 GGTA
7237046 CTTTGGTAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (54 bp):
GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAG
Found at i:7237072 original size:81 final size:81
Alignment explanation
Indices: 7236882--7237038 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
7236872 ATCCTAGCGG
***
7236882 TAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAA
1 TAAAATGGTAATTTTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATAGTAA
*
7236947 TTCTGTAAATCAAGGA
66 TTCTATAAATCAAGGA
* * * * *
7236963 TAAAATAGTGATTTTGTAAATCGAGGGTAAAACAATAATTTTGTATATCGAGGGTAAAATGGTAA
1 TAAAATGGTAATTTTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATAGTAA
7237028 TTCTATAAATC
66 TTCTATAAATC
7237039 GGGGGTACTT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (81 bp):
TAAAATGGTAATTTTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATAGTAA
TTCTATAAATCAAGGA
Found at i:7237082 original size:54 final size:54
Alignment explanation
Indices: 7237024--7237141 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
7237014 GGGTAAAATG
* * * * **
7237024 GTAATTCTATAAATCGGGGGTACTTTGGTAATTTTATAAGTTAAGGGTATTTCA
1 GTAATTCTACAAATCAGAGGTACTTTGGTAATTTTACAAACTAAGGGTATTTCA
* * **
7237078 GTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTCT-ACAAATCAGAGGTACTTTGGTAATTTTACAAACTAAGGGTATTTCA
7237132 GTAATTCTAC
1 GTAATTCTAC
7237142 CCTACAGGGG
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 1 0.02
54 50 0.96
55 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTAATTCTACAAATCAGAGGTACTTTGGTAATTTTACAAACTAAGGGTATTTCA
Found at i:7237126 original size:27 final size:26
Alignment explanation
Indices: 7237022--7237137 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 26
7237012 GAGGGTAAAA
* * * *
7237022 TGGTAATTCTATAAATCGGGGGTACTT
1 TGGTAATTTTACAAAT-AGGGGTATTT
* * *
7237049 TGGTAATTTTATAAGTTAAGGGTATTT
1 TGGTAATTTTACAA-ATAGGGGTATTT
** * *
7237076 CAGTAATTTCACAAATCAGAGGTATTT
1 TGGTAATTTTACAAAT-AGGGGTATTT
7237103 TGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAA-TAGGGGTATTT
7237130 TGGTAATT
1 TGGTAATT
7237138 CTACCCTACA
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.01
27 67 0.96
28 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
TGGTAATTTTACAAATAGGGGTATTT
Found at i:7237150 original size:27 final size:27
Alignment explanation
Indices: 7237096--7237183 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
7237086 ACAAATCAGA
* **
7237096 GGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTTGGTAATTCTACCCTAC-AGG
7237123 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* ** * *
7237150 GGCATTTCAGTACTTCTACCCTACAAG
1 GGTATTTTGGTAATTCTACCCTACAGG
7237177 GGTATTT
1 GGTATTT
7237184 CAATAATGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 48 0.94
28 3 0.06
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTTGGTAATTCTACCCTACAGG
Found at i:7237184 original size:27 final size:27
Alignment explanation
Indices: 7237122--7237201 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
7237112 TACAAACTAG
** *
7237122 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAA
* *
7237149 GGGCATTTCAGTACTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAA
* * *
7237176 GGGTATTTCAATAATGCTAGCCTACA
1 GGGTATTTCAGTAATTCTACCCTACA
7237202 GATATGAGAT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAA
Found at i:7238151 original size:71 final size:71
Alignment explanation
Indices: 7237932--7238154 Score: 331
Period size: 71 Copynumber: 3.1 Consensus size: 71
7237922 GGGTGTTACA
* * * * **
7237932 GTATCGGTAGAAGTGCAGGGGATACTGAACTTTGGCTACTAACTTGACTTGTTTCAATAGAAGTC
1 GTATCGATAGAAGTGCAGGAGATGCTGAACTTTAGCTACTAACTTGACTTGTTTCTGTAGAAGTC
* *
7237997 TTCAAT
66 CTCAAG
* *
7238003 GTATCGGTAGAAGTGCTGGAGATGCTGAACTTTAGCTACTAACTTGACTTGTTT-TGGTAGAAGT
1 GTATCGATAGAAGTGCAGGAGATGCTGAACTTTAGCTACTAACTTGACTTGTTTCT-GTAGAAGT
7238067 CCTCAAG
65 CCTCAAG
*
7238074 GTATCGATAGAAGTGCAGGAGATGCTGAACTTTAGCTACTGACTTGACTTGTTTCTGTAGAAGTC
1 GTATCGATAGAAGTGCAGGAGATGCTGAACTTTAGCTACTAACTTGACTTGTTTCTGTAGAAGTC
7238139 CTCAAG
66 CTCAAG
7238145 GTATCGATAG
1 GTATCGATAG
7238155 TAGTCTCAGG
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
71 138 0.99
72 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (71 bp):
GTATCGATAGAAGTGCAGGAGATGCTGAACTTTAGCTACTAACTTGACTTGTTTCTGTAGAAGTC
CTCAAG
Found at i:7240778 original size:32 final size:32
Alignment explanation
Indices: 7240737--7240797 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
7240727 AAGATGAAGT
*
7240737 ATATTTTTTTAATTTTTAATTTTTCTTTTAAA
1 ATATTTTTTTAATTTTTAATTTTACTTTTAAA
7240769 ATATTTTTTTAATTTTTAATTTTACTTTT
1 ATATTTTTTTAATTTTTAATTTTACTTTT
7240798 CTTTTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.70
Consensus pattern (32 bp):
ATATTTTTTTAATTTTTAATTTTACTTTTAAA
Found at i:7241155 original size:19 final size:19
Alignment explanation
Indices: 7241127--7241180 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
7241117 ACAATTTATA
7241127 AAAATTTTAATTTTTGTAT
1 AAAATTTTAATTTTTGTAT
* *
7241146 AAATTTTTAAATTTTTTTAT
1 AAAATTTT-AATTTTTGTAT
7241166 AAAATTTT-ATTTTTG
1 AAAATTTTAATTTTTG
7241181 AAATTGCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 17 0.57
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
AAAATTTTAATTTTTGTAT
Found at i:7245698 original size:11 final size:11
Alignment explanation
Indices: 7245683--7245716 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7245673 ATTTGATAAA
7245683 AAGAAAAGAAG
1 AAGAAAAGAAG
*
7245694 GAGAAAAGAA-
1 AAGAAAAGAAG
7245704 AAGAAAAGAAG
1 AAGAAAAGAAG
7245715 AA
1 AA
7245717 TATAAAGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAGAAAAGAAG
Found at i:7253308 original size:32 final size:32
Alignment explanation
Indices: 7253262--7253363 Score: 107
Period size: 32 Copynumber: 3.1 Consensus size: 32
7253252 CTAAGTATAA
*
7253262 AAACAACATTAAAATAGCAACAAAACAACACC
1 AAACAACATAAAAATAGCAACAAAACAACACC
* *
7253294 AAACAACGTAAAAATAGC-ACAAAAAATAGCACC
1 AAACAACATAAAAATAGCAACAAAACA-A-CACC
* * *
7253327 AAACAACACAAAAAATAGCATCACCAACAACACC
1 AAACAACA-TAAAAATAGCAACA-AAACAACACC
7253361 AAA
1 AAA
7253364 ATAGCACCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
31 7 0.12
32 17 0.30
33 11 0.19
34 16 0.28
35 3 0.05
36 3 0.05
ACGTcount: A:0.62, C:0.25, G:0.05, T:0.08
Consensus pattern (32 bp):
AAACAACATAAAAATAGCAACAAAACAACACC
Found at i:7253329 original size:13 final size:12
Alignment explanation
Indices: 7253303--7253346 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
7253293 CAAACAACGT
7253303 AAAAATAGCACA
1 AAAAATAGCACA
*
7253315 AAAAATAGCACC
1 AAAAATAGCACA
*
7253327 AAACA-A-CACA
1 AAAAATAGCACA
7253337 AAAAATAGCA
1 AAAAATAGCA
7253347 TCACCAACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 17 0.65
ACGTcount: A:0.66, C:0.20, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAAATAGCACA
Found at i:7253355 original size:24 final size:22
Alignment explanation
Indices: 7253311--7253374 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
7253301 GTAAAAATAG
7253311 CACAAAAAATAGCACCAAACAA
1 CACAAAAAATAGCACCAAACAA
*
7253333 CACAAAAAATAGCATCACCAACAA
1 CACAAAAAATAGCA-C-CAAACAA
*
7253357 CAC-CAAAATAGCACCAAA
1 CACAAAAAATAGCACCAAA
7253375 AACCTGCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.08
22 15 0.41
23 10 0.27
24 9 0.24
ACGTcount: A:0.59, C:0.30, G:0.05, T:0.06
Consensus pattern (22 bp):
CACAAAAAATAGCACCAAACAA
Found at i:7253361 original size:34 final size:31
Alignment explanation
Indices: 7253272--7253363 Score: 94
Period size: 34 Copynumber: 2.8 Consensus size: 31
7253262 AAACAACATT
**
7253272 AAAATAGCAACAAAACAACACCAAACAACGTA
1 AAAATAGC-ACAAAACAACACCAAACAACCAA
*
7253304 AAAATAGCACAAAAAATAGCACCAAACAACACAA
1 AAAATAGCACAAAACA-A-CACCAAACAAC-CAA
*
7253338 AAAATAGCATCACCAACAACACCAAA
1 AAAATAGCA-CA-AAACAACACCAAA
7253364 ATAGCACCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
31 7 0.14
32 9 0.18
33 11 0.22
34 17 0.34
35 3 0.06
36 3 0.06
ACGTcount: A:0.62, C:0.26, G:0.05, T:0.07
Consensus pattern (31 bp):
AAAATAGCACAAAACAACACCAAACAACCAA
Found at i:7254944 original size:18 final size:18
Alignment explanation
Indices: 7254918--7254953 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7254908 GAAGTTAGAC
7254918 AAATGAAACCAAGTGCTT
1 AAATGAAACCAAGTGCTT
* *
7254936 AAATTAAACCAGGTGCTT
1 AAATGAAACCAAGTGCTT
7254954 TAGCCAACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (18 bp):
AAATGAAACCAAGTGCTT
Found at i:7256377 original size:14 final size:15
Alignment explanation
Indices: 7256354--7256382 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7256344 AAAAATCTAC
7256354 AGAACAAAAAGAAAA
1 AGAACAAAAAGAAAA
7256369 AGAAC-AAAAGAAAA
1 AGAACAAAAAGAAAA
7256383 GAGCTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (15 bp):
AGAACAAAAAGAAAA
Found at i:7260252 original size:35 final size:35
Alignment explanation
Indices: 7260206--7260275 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7260196 TAATTTTCTC
7260206 ATCTTTCTACTAACTTTTTACTTATATACTTTGAT
1 ATCTTTCTACTAACTTTTTACTTATATACTTTGAT
7260241 ATCTTTCTACTAACTTTTTACTTATATACTTTGAT
1 ATCTTTCTACTAACTTTTTACTTATATACTTTGAT
7260276 TAGTATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.03, T:0.54
Consensus pattern (35 bp):
ATCTTTCTACTAACTTTTTACTTATATACTTTGAT
Found at i:7277500 original size:19 final size:19
Alignment explanation
Indices: 7277464--7277500 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7277454 TAATTAGGCT
* *
7277464 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
7277483 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
7277501 GAAAAAAGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:7279139 original size:13 final size:13
Alignment explanation
Indices: 7279121--7279146 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7279111 ATTTGATTGG
7279121 AATATGAATTAAA
1 AATATGAATTAAA
7279134 AATATGAATTAAA
1 AATATGAATTAAA
7279147 TAAAAGTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AATATGAATTAAA
Found at i:7279518 original size:23 final size:23
Alignment explanation
Indices: 7279492--7279554 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
7279482 GTCGATCAAG
*
7279492 CACTTTATATGTCGTATATCAGA
1 CACTTTATGTGTCGTATATCAGA
* * *
7279515 CACTTTATGTGTTGTATTTCAGG
1 CACTTTATGTGTCGTATATCAGA
* *
7279538 CGCCTTATGTGTCGTAT
1 CACTTTATGTGTCGTAT
7279555 CAGGCACCTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (23 bp):
CACTTTATGTGTCGTATATCAGA
Found at i:7279559 original size:21 final size:20
Alignment explanation
Indices: 7279519--7279594 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 20
7279509 ATCAGACACT
*
7279519 TTATGTGTTGTATTTCAGGCGCC
1 TTATGTGTCGTA--TCAGGC-CC
7279542 TTATGTGTCGTATCAGGCACC
1 TTATGTGTCGTATCAGGC-CC
** * *
7279563 TCGTGTGTCGTTTCAGGCAC
1 TTATGTGTCGTATCAGGCCC
7279583 TTAT-TGTCGTAT
1 TTATGTGTCGTAT
7279595 ACTGATCAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 7 0.16
20 3 0.07
21 23 0.52
23 11 0.25
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.41
Consensus pattern (20 bp):
TTATGTGTCGTATCAGGCCC
Found at i:7281194 original size:57 final size:58
Alignment explanation
Indices: 7281126--7281238 Score: 165
Period size: 57 Copynumber: 2.0 Consensus size: 58
7281116 TTTTCAGGTC
* * * *
7281126 ATTTTCATTTTGGAGAAAACCACATTCATTTCTAGATGATTTC-ATTTCTCCATTTTT
1 ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTCCATTTTT
* *
7281183 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGCTTCCTATTTCTCCATTT
1 ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTCCATTT
7281239 CACCATTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 37 0.76
58 12 0.24
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.45
Consensus pattern (58 bp):
ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTCCATTTTT
Found at i:7284746 original size:46 final size:45
Alignment explanation
Indices: 7284679--7284850 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
7284669 TGTAAACCGC
* *
7284679 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* * *
7284725 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* *
7284775 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCG-TTGCAT
* *
7284818 CCATAAGTGAACTCGCACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
7284851 TGGATGCCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 2 0.02
45 2 0.02
46 56 0.54
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:7284794 original size:93 final size:93
Alignment explanation
Indices: 7284686--7284858 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
7284676 CGCCCATAAG
* *
7284686 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAG-ACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTC-GCACTCAACTC
7284750 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
7284779 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTCGCACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGCACTCAACTCA
*
7284844 ACGAGTTTGGATGCC
66 ACGAGTTCGGATGCC
7284859 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGCACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7287884 original size:48 final size:48
Alignment explanation
Indices: 7287832--7287923 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
7287822 AACAGTATCA
7287832 TAATATCATACATATCCTCTCATCAATTCTTATCAGACGAAATGTAAG
1 TAATATCATACATATCCTCTCATCAATTCTTATCAGACGAAATGTAAG
*
7287880 TAATATCATGCATATCCTCTCATCAATTCTTATCAGACGAAATG
1 TAATATCATACATATCCTCTCATCAATTCTTATCAGACGAAATG
7287924 CAATAAAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.34
Consensus pattern (48 bp):
TAATATCATACATATCCTCTCATCAATTCTTATCAGACGAAATGTAAG
Found at i:7293335 original size:30 final size:30
Alignment explanation
Indices: 7293299--7293355 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
7293289 GACACATGGG
*
7293299 CGTGTGACATGCCCGTGTTTAATACACGGC
1 CGTGTGACATGCCCGTGTGTAATACACGGC
7293329 CGTGTGACATGCCCGTGTGTAATACAC
1 CGTGTGACATGCCCGTGTGTAATACAC
7293356 AGACGTGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (30 bp):
CGTGTGACATGCCCGTGTGTAATACACGGC
Found at i:7295330 original size:18 final size:18
Alignment explanation
Indices: 7295309--7295347 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7295299 GTGGAAATAG
7295309 AAATAAAA-ATAAAAGGAA
1 AAATAAAAGA-AAAAGGAA
7295327 AAATAAAAGAAAAAGGAA
1 AAATAAAAGAAAAAGGAA
7295345 AAA
1 AAA
7295348 AACAGCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (18 bp):
AAATAAAAGAAAAAGGAA
Found at i:7307160 original size:19 final size:20
Alignment explanation
Indices: 7307116--7307161 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
7307106 TTCAACAAAC
*
7307116 CCCCTTCTCCTTCTCCCTTT
1 CCCCTTCTCCTTCTCCCTTA
**
7307136 TTCCTTCT-CTTCTCCCTTA
1 CCCCTTCTCCTTCTCCCTTA
7307155 CCCCTTC
1 CCCCTTC
7307162 CACATCTCAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.02, C:0.52, G:0.00, T:0.46
Consensus pattern (20 bp):
CCCCTTCTCCTTCTCCCTTA
Found at i:7314837 original size:6 final size:6
Alignment explanation
Indices: 7314826--7314866 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
7314816 TAAACACCTA
*
7314826 TTATTT TTATTT ATT-TTT TTA-TT TTATTT TTATCT TTATTT
1 TTATTT TTATTT -TTATTT TTATTT TTATTT TTATTT TTATTT
7314867 ATATGTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
5 7 0.23
6 21 0.70
7 2 0.07
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:7314846 original size:12 final size:12
Alignment explanation
Indices: 7314824--7314866 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
7314814 CATAAACACC
7314824 TATTATTTTTATT
1 TATT-TTTTTATT
7314837 TATTTTTTTATTT
1 TATTTTTTTA-TT
* *
7314850 TATTTTTATCTT
1 TATTTTTTTATT
7314862 TATTT
1 TATTT
7314867 ATATGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 13 0.48
13 14 0.52
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (12 bp):
TATTTTTTTATT
Found at i:7320691 original size:15 final size:15
Alignment explanation
Indices: 7320671--7320699 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7320661 TAAGAATTTT
7320671 TCCCTTTTTATTGAC
1 TCCCTTTTTATTGAC
7320686 TCCCTTTTTATTGA
1 TCCCTTTTTATTGA
7320700 GACTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.24, G:0.07, T:0.55
Consensus pattern (15 bp):
TCCCTTTTTATTGAC
Found at i:7321628 original size:30 final size:30
Alignment explanation
Indices: 7321593--7321649 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7321583 AGGCACTTCT
7321593 ACACGGGTA-ATCCACACGCCCGTGTGTGAC
1 ACACGGGTAGA-CCACACGCCCGTGTGTGAC
*
7321623 ACACGGGTAGACCACACGCCCTTGTGT
1 ACACGGGTAGACCACACGCCCGTGTGT
7321650 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (30 bp):
ACACGGGTAGACCACACGCCCGTGTGTGAC
Found at i:7326014 original size:40 final size:40
Alignment explanation
Indices: 7325968--7326084 Score: 126
Period size: 40 Copynumber: 2.9 Consensus size: 40
7325958 GGCGTTTGGA
* * *
7325968 TAAAAAATGCCACTATAGATTAAGCATTAGCAGCGCTATT
1 TAAAAAACGCCGCTATAGATCAAGCATTAGCAGCGCTATT
* * * * *
7326008 TGAAAAACGCCGCTATAGGTCGAGCATTAGCGGCGCTTTT
1 TAAAAAACGCCGCTATAGATCAAGCATTAGCAGCGCTATT
* * * *
7326048 TAAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCT
1 TAAAAAACGCCGCTATAGATCAAGCATTAGCAGCGCT
7326085 TTTTTTAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (40 bp):
TAAAAAACGCCGCTATAGATCAAGCATTAGCAGCGCTATT
Found at i:7326085 original size:40 final size:40
Alignment explanation
Indices: 7325992--7326088 Score: 158
Period size: 40 Copynumber: 2.4 Consensus size: 40
7325982 ATAGATTAAG
* * * *
7325992 CATTAGCAGCGCTATTTGAAAAACGCCGCTATAGGTCGAG
1 CATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTCGAC
7326032 CATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTCGAC
1 CATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTCGAC
7326072 CATTAGCGGCGCTTTTT
1 CATTAGCGGCGCTTTTT
7326089 TTAAAATGCC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (40 bp):
CATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTCGAC
Found at i:7326257 original size:40 final size:40
Alignment explanation
Indices: 7326146--7326289 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
7326136 AACTTTAGTG
* * *
7326146 GCATTAACGGCGCTTTTTGAAAAACGCCGCGATAGATTAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* *
7326186 GCATTTGCGGCTCTTTTTGAAAAACGCCGCTATAGATCAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* ** * **
7326226 GCATTAGCGACGCTTTTTGAAAAACATCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* * *
7326266 CCATTAGCGGCGTTTTTTCAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAA
7326290 TGCCACAAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
Found at i:7326324 original size:195 final size:195
Alignment explanation
Indices: 7325982--7326370 Score: 575
Period size: 195 Copynumber: 2.0 Consensus size: 195
7325972 AAATGCCACT
* * *
7325982 ATAGATTAAGCATTAGCAGCGCTATTTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGCGCTTT
1 ATAGATTAAGCATTAGCAGCGCTATTTGAAAAACGCCGCTATAGATCAAGCATTAGCGACGCTTT
* * *
7326047 TTAAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTTTTTAAAATGCCACAAAAAAGTTAA
66 TTAAAAAACACCGCTATAGGTCGACCATTAGCGGCGCTTTTTTAAAAATGCCACAAAAAAATTAA
**
7326112 GCACAACGTCATCGTTTTATGTTGAACTTTAGTGGCATTAACGG-CGCTTTTTGAAAAACGCCGC
131 GCACAACACCATCGTTTTATGTTGAACTTTAGTGGCATT-ACGGACGCTTTTTGAAAAACGCCGC
7326176 G
195 G
* * * *
7326177 ATAGATTAAGCATTTGCGGCTCTTTTTGAAAAACGCCGCTATAGATCAAGCATTAGCGACGCTTT
1 ATAGATTAAGCATTAGCAGCGCTATTTGAAAAACGCCGCTATAGATCAAGCATTAGCGACGCTTT
* * *
7326242 TTGAAAAACATCGCTATAGGTTGACCATTAGCGGCG-TTTTTTCAAAAATGCCACAAAAAAATTA
66 TTAAAAAACACCGCTATAGGTCGACCATTAGCGGCGCTTTTTT-AAAAATGCCACAAAAAAATTA
* * * *
7326306 AGTACAACACCGTCGTTTTATGTTGAACTTTAGTGGCATTAGGGATGCTTTTTGAAAAACGCCGC
130 AGCACAACACCATCGTTTTATGTTGAACTTTAGTGGCATTACGGACGCTTTTTGAAAAACGCCGC
7326371 AAAAAACATT
Statistics
Matches: 173, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
194 9 0.05
195 164 0.95
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (195 bp):
ATAGATTAAGCATTAGCAGCGCTATTTGAAAAACGCCGCTATAGATCAAGCATTAGCGACGCTTT
TTAAAAAACACCGCTATAGGTCGACCATTAGCGGCGCTTTTTTAAAAATGCCACAAAAAAATTAA
GCACAACACCATCGTTTTATGTTGAACTTTAGTGGCATTACGGACGCTTTTTGAAAAACGCCGCG
Found at i:7326695 original size:14 final size:14
Alignment explanation
Indices: 7326672--7326830 Score: 85
Period size: 14 Copynumber: 11.2 Consensus size: 14
7326662 TTAATTATCA
* *
7326672 TTATGGTTTAAGGT
1 TTATGATTTATGGT
*
7326686 TTATGATTTAGGGT
1 TTATGATTTATGGT
* * *
7326700 ATATAATTTAGGGT
1 TTATGATTTATGGT
* * *
7326714 TTAAGGTTTAAGAG-
1 TTATGATTTATG-GT
*
7326728 TTACT-ATTTTAAGGT
1 TTA-TGA-TTTATGGT
*
7326743 TTATGGA-TTATGGA
1 TTAT-GATTTATGGT
7326757 TTATGGA-TTATGGGT
1 TTAT-GATTTAT-GGT
*
7326772 TTAGGGA-TTATGGT
1 TTA-TGATTTATGGT
*
7326786 TTATGGTTTATGGT
1 TTATGATTTATGGT
*
7326800 TTATGGTTTATGGT
1 TTATGATTTATGGT
*
7326814 TTATGGTTTATGGT
1 TTATGATTTATGGT
7326828 TTA
1 TTA
7326831 AGGGTTGGGA
Statistics
Matches: 119, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
13 1 0.01
14 96 0.81
15 21 0.18
16 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATGATTTATGGT
Found at i:7326753 original size:7 final size:7
Alignment explanation
Indices: 7326735--7326830 Score: 129
Period size: 7 Copynumber: 13.6 Consensus size: 7
7326725 GAGTTACTAT
*
7326735 TTTAAGG
1 TTTATGG
7326742 TTTATGG
1 TTTATGG
*
7326749 ATTATGG
1 TTTATGG
*
7326756 ATTATGG
1 TTTATGG
*
7326763 ATTATGGG
1 TTTAT-GG
*
7326771 TTTAGGG
1 TTTATGG
*
7326778 ATTATGG
1 TTTATGG
7326785 TTTATGG
1 TTTATGG
7326792 TTTATGG
1 TTTATGG
7326799 TTTATGG
1 TTTATGG
7326806 TTTATGG
1 TTTATGG
7326813 TTTATGG
1 TTTATGG
7326820 TTTATGG
1 TTTATGG
7326827 TTTA
1 TTTA
7326831 AGGGTTGGGA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
7 76 0.94
8 5 0.06
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (7 bp):
TTTATGG
Found at i:7326877 original size:7 final size:7
Alignment explanation
Indices: 7326768--7326931 Score: 73
Period size: 7 Copynumber: 23.1 Consensus size: 7
7326758 TATGGATTAT
7326768 GGGTTTA
1 GGGTTTA
*
7326775 GGGATTA
1 GGGTTTA
*
7326782 TGGTTTA
1 GGGTTTA
*
7326789 TGGTTTA
1 GGGTTTA
*
7326796 TGGTTTA
1 GGGTTTA
*
7326803 TGGTTTA
1 GGGTTTA
*
7326810 TGGTTTA
1 GGGTTTA
*
7326817 TGGTTTA
1 GGGTTTA
*
7326824 TGGTTTAA
1 GGGTTT-A
7326832 GGG-TT-
1 GGGTTTA
7326837 GGGATTTA
1 GGG-TTTA
* *
7326845 AGATTTA
1 GGGTTTA
7326852 -GGTGTTA
1 GGGT-TTA
*
7326859 GGGGTTAA
1 -GGGTTTA
7326867 GGGTTTA
1 GGGTTTA
7326874 GGGTTTA
1 GGGTTTA
* *
7326881 TGTTTTA
1 GGGTTTA
* *
7326888 TGATTTA
1 GGGTTTA
* *
7326895 AGGTCTA
1 GGGTTTA
* *
7326902 GGGGATAA
1 -GGGTTTA
* *
7326910 GAGTTAA
1 GGGTTTA
7326917 GGGTTTA
1 GGGTTTA
7326924 GGGTTTA
1 GGGTTTA
7326931 G
1 G
7326932 ATTAATTAGT
Statistics
Matches: 126, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
5 3 0.02
6 2 0.02
7 109 0.87
8 9 0.07
9 3 0.02
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Done.