Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 21 of 182
Found at i:7326893 original size:43 final size:43
Alignment explanation
Indices: 7326841--7326923 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
7326831 AGGGTTGGGA
* * * *
7326841 TTTAAGATTT-AGGTGTTAGGGGTTAAGGGTTTAGGGTTTATGT
1 TTTAAGATTTAAGGT-CTAGGGGATAAGAGTTAAGGGTTTATGT
*
7326884 TTTATGATTTAAGGTCTAGGGGATAAGAGTTAAGGGTTTA
1 TTTAAGATTTAAGGTCTAGGGGATAAGAGTTAAGGGTTTA
7326924 GGGTTTAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 30 0.88
44 4 0.12
ACGTcount: A:0.25, C:0.01, G:0.33, T:0.41
Consensus pattern (43 bp):
TTTAAGATTTAAGGTCTAGGGGATAAGAGTTAAGGGTTTATGT
Found at i:7327359 original size:40 final size:40
Alignment explanation
Indices: 7327303--7327380 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
7327293 TAAAAAAAAT
* * *
7327303 CAAGCATTAGCGGCGTTTATAATAAAAACGCCGCAAAAGG
1 CAAGCAATAGCAGCGTTTATAATAAAAAAGCCGCAAAAGG
* *
7327343 CAAGCAATAGCAGCGTTTATGATAAAAAAGCCGTAAAA
1 CAAGCAATAGCAGCGTTTATAATAAAAAAGCCGCAAAA
7327381 AATTAATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (40 bp):
CAAGCAATAGCAGCGTTTATAATAAAAAAGCCGCAAAAGG
Found at i:7327602 original size:18 final size:18
Alignment explanation
Indices: 7327551--7327604 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
7327541 CTCTTCCTCC
*
7327551 ATTCCCTTTTCTTTCCCA
1 ATTCCCTTTTCTTTCTCA
*
7327569 ATTTCCTTTTCTTTCTCA
1 ATTCCCTTTTCTTTCTCA
7327587 ATTCCCTTTTCTTTCTCA
1 ATTCCCTTTTCTTTCTCA
7327605 GCCTTTCTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTCCCTTTTCTTTCTCA
Found at i:7329933 original size:15 final size:16
Alignment explanation
Indices: 7329913--7329943 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7329903 GTTTTTGTCT
7329913 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
7329928 TATATATGATCTAAAA
1 TATATATGATCTAAAA
7329944 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:7331977 original size:43 final size:43
Alignment explanation
Indices: 7331867--7331980 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
7331857 AATAATTTTT
* * * *
7331867 TTAAGGGTCATGATCTTTAGCGGCATTTGTGAGAAAAGCGTCG
1 TTAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCG
* *
7331910 CTAAAGGTCATGTTTTTTAGCGGCGTTTGTG-GAAAAAGCGCCG
1 TTAAAGGTCATGTTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCG
*
7331953 TTAAAGGTCATGTTCTATAGCGGCGTTT
1 TTAAAGGTCATGTTCTTTAGCGGCGTTT
7331981 TTTTCATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (43 bp):
TTAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCG
Found at i:7332038 original size:12 final size:14
Alignment explanation
Indices: 7332003--7332041 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
7331993 CCACAAAATG
7332003 TTAGCGGCGTTGTCT
1 TTAGCGGCGTT-TCT
7332018 TTAGCGGCGTTT-T
1 TTAGCGGCGTTTCT
7332031 TT-GCGGCGTTT
1 TTAGCGGCGTTT
7332042 GTAAAAGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 9 0.38
13 3 0.12
14 1 0.04
15 11 0.46
ACGTcount: A:0.05, C:0.18, G:0.33, T:0.44
Consensus pattern (14 bp):
TTAGCGGCGTTTCT
Found at i:7339983 original size:16 final size:16
Alignment explanation
Indices: 7339958--7339992 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7339948 GATGCTCGTA
7339958 ACATTATTAACAATTT
1 ACATTATTAACAATTT
*
7339974 ACATTGTTAACAATTT
1 ACATTATTAACAATTT
7339990 ACA
1 ACA
7339993 ATAACCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (16 bp):
ACATTATTAACAATTT
Found at i:7341371 original size:17 final size:17
Alignment explanation
Indices: 7341352--7341385 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7341342 AAAAAAATCT
7341352 AAATTTACAAAATATATA
1 AAATTT-CAAAATATATA
*
7341370 AAATTTTAAAATATAT
1 AAATTTCAAAATATAT
7341386 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTTCAAAATATATA
Found at i:7342122 original size:12 final size:12
Alignment explanation
Indices: 7342088--7342129 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
7342078 CTGCAGGTAA
*
7342088 TATTTTCCATTT
1 TATTTTCCGTTT
* *
7342100 TCTTTT-AGTTT
1 TATTTTCCGTTT
7342111 TATTTTCCGTTT
1 TATTTTCCGTTT
7342123 TATTTTC
1 TATTTTC
7342130 TTTGATTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.12, C:0.14, G:0.05, T:0.69
Consensus pattern (12 bp):
TATTTTCCGTTT
Found at i:7343109 original size:168 final size:168
Alignment explanation
Indices: 7342831--7343164 Score: 607
Period size: 168 Copynumber: 2.0 Consensus size: 168
7342821 TCGTGACTAT
7342831 ACTTGTTATTCAAAAAAGCTCATATTCTCAGGTCAACGCCGGTTGTGTTTCGATATTAGTGGAAT
1 ACTTGTTATTCAAAAAAGCTCATATTCTCAGGTCAACGCCGGTTGTGTTTCGATATTAGTGGAAT
* *
7342896 TAGTATCATACTAATTCTGCTCGGAGTAAATTTTGGAGTTTTGTGAAACTTTCTAATCTATTTTC
66 TAGTATCATACTAATTCTGCTCGGAGTAAATTTTGCAGTTTTGTGAAAATTTCTAATCTATTTTC
7342961 GGTCAGATGTCTGATTAATATGTGCAACATCAACATCA
131 GGTCAGATGTCTGATTAATATGTGCAACATCAACATCA
*
7342999 ACTTGTTATTCAAAAAAGCTCATATTCTCAGGTCAACGCCGGTTGTGTTTCGATATTTA-TGTAA
1 ACTTGTTATTCAAAAAAGCTCATATTCTCAGGTCAACGCCGGTTGTGTTTCGATA-TTAGTGGAA
*
7343063 TTAGTATCATACTAATTCTGCTCGGAGTAAATTTTGCAGTTTTGTGAAAATTTCTAATTTATTTT
65 TTAGTATCATACTAATTCTGCTCGGAGTAAATTTTGCAGTTTTGTGAAAATTTCTAATCTATTTT
*
7343128 TGGTCAGATGTCTGATTAATATGTGCAACATCAACAT
130 CGGTCAGATGTCTGATTAATATGTGCAACATCAACAT
7343165 GTACAATATT
Statistics
Matches: 160, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
168 157 0.98
169 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (168 bp):
ACTTGTTATTCAAAAAAGCTCATATTCTCAGGTCAACGCCGGTTGTGTTTCGATATTAGTGGAAT
TAGTATCATACTAATTCTGCTCGGAGTAAATTTTGCAGTTTTGTGAAAATTTCTAATCTATTTTC
GGTCAGATGTCTGATTAATATGTGCAACATCAACATCA
Found at i:7343433 original size:15 final size:15
Alignment explanation
Indices: 7343415--7343463 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
7343405 CAAGATTAAT
*
7343415 ATGTGCAACATCAAC
1 ATGTGCAACATGAAC
* * *
7343430 ATGTACAACATGGAT
1 ATGTGCAACATGAAC
7343445 ATGTGCAACATGAAC
1 ATGTGCAACATGAAC
7343460 ATGT
1 ATGT
7343464 ACAGGATTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (15 bp):
ATGTGCAACATGAAC
Found at i:7343433 original size:30 final size:30
Alignment explanation
Indices: 7343397--7343466 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
7343387 AATGAAGAGT
* * *
7343397 AACATGTCCAAGATTAATATGTGCAACATC
1 AACATGTACAACATGAATATGTGCAACATC
* *
7343427 AACATGTACAACATGGATATGTGCAACATG
1 AACATGTACAACATGAATATGTGCAACATC
7343457 AACATGTACA
1 AACATGTACA
7343467 GGATTGACAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (30 bp):
AACATGTACAACATGAATATGTGCAACATC
Found at i:7348536 original size:113 final size:113
Alignment explanation
Indices: 7348338--7348565 Score: 456
Period size: 113 Copynumber: 2.0 Consensus size: 113
7348328 GATAAATACC
7348338 TAAGAGCAACCATTTGGTTAATGTCAGTGGAGCCCCCAGCACTTCAGATTGATGTTTCTTTATGG
1 TAAGAGCAACCATTTGGTTAATGTCAGTGGAGCCCCCAGCACTTCAGATTGATGTTTCTTTATGG
7348403 AGTTGCATGGGACCGGCTAGTTGACAATGACTCCCATGACTCGTGGTA
66 AGTTGCATGGGACCGGCTAGTTGACAATGACTCCCATGACTCGTGGTA
7348451 TAAGAGCAACCATTTGGTTAATGTCAGTGGAGCCCCCAGCACTTCAGATTGATGTTTCTTTATGG
1 TAAGAGCAACCATTTGGTTAATGTCAGTGGAGCCCCCAGCACTTCAGATTGATGTTTCTTTATGG
7348516 AGTTGCATGGGACCGGCTAGTTGACAATGACTCCCATGACTCGTGGTA
66 AGTTGCATGGGACCGGCTAGTTGACAATGACTCCCATGACTCGTGGTA
7348564 TA
1 TA
7348566 TTTGCAAATT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 115 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (113 bp):
TAAGAGCAACCATTTGGTTAATGTCAGTGGAGCCCCCAGCACTTCAGATTGATGTTTCTTTATGG
AGTTGCATGGGACCGGCTAGTTGACAATGACTCCCATGACTCGTGGTA
Found at i:7351939 original size:5 final size:6
Alignment explanation
Indices: 7351921--7351945 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7351911 GAAATCTAGA
7351921 TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT T
7351946 CTGAATGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:7354573 original size:21 final size:21
Alignment explanation
Indices: 7354549--7354591 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7354539 AGGAATAATG
* *
7354549 AAACATGTATGACATGTATAT
1 AAACATATATGACATATATAT
* *
7354570 AAACCTATATGATATATATAT
1 AAACATATATGACATATATAT
7354591 A
1 A
7354592 TTTATATTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (21 bp):
AAACATATATGACATATATAT
Found at i:7354961 original size:26 final size:25
Alignment explanation
Indices: 7354898--7354969 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
7354888 ATATTACATA
* *
7354898 AATATGTTATAAAAACT-TAATAAC
1 AATATATTATAATAACTATAATAAC
* *
7354922 ACATATATGATAATAACTATAATAAT
1 A-ATATATTATAATAACTATAATAAC
*
7354948 AATATATTAGTAATAAATATAA
1 AATATATTA-TAATAACTATAA
7354970 GAAGAATAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.03
25 20 0.51
26 18 0.46
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.35
Consensus pattern (25 bp):
AATATATTATAATAACTATAATAAC
Found at i:7354977 original size:26 final size:25
Alignment explanation
Indices: 7354924--7354977 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
7354914 TTAATAACAC
* * *
7354924 ATATATGATAATAACTATAATAATA
1 ATATATGATAATAAATATAAGAAGA
*
7354949 ATATATTAGTAATAAATATAAGAAGA
1 ATATATGA-TAATAAATATAAGAAGA
7354975 ATA
1 ATA
7354978 AAAATAACAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (25 bp):
ATATATGATAATAAATATAAGAAGA
Found at i:7357502 original size:6 final size:6
Alignment explanation
Indices: 7357487--7357521 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7357477 TTGTATTACA
* *
7357487 AACTAT AACTAC AACTAC AACTAG AACTAC AACTA
1 AACTAC AACTAC AACTAC AACTAC AACTAC AACTA
7357522 GATTTGGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.51, C:0.26, G:0.03, T:0.20
Consensus pattern (6 bp):
AACTAC
Found at i:7357514 original size:18 final size:18
Alignment explanation
Indices: 7357487--7357521 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7357477 TTGTATTACA
*
7357487 AACTATAACTACAACTAC
1 AACTAGAACTACAACTAC
7357505 AACTAGAACTACAACTA
1 AACTAGAACTACAACTA
7357522 GATTTGGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.26, G:0.03, T:0.20
Consensus pattern (18 bp):
AACTAGAACTACAACTAC
Found at i:7359378 original size:22 final size:24
Alignment explanation
Indices: 7359336--7359379 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
7359326 TAACTAAGTT
7359336 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
7359360 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
7359380 TCTTGCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:7360367 original size:15 final size:16
Alignment explanation
Indices: 7360349--7360381 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7360339 ATTACAATTG
7360349 TACAAATATA-ATTTT
1 TACAAATATATATTTT
*
7360364 TACACATATATATTTT
1 TACAAATATATATTTT
7360380 TA
1 TA
7360382 TTACTATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (16 bp):
TACAAATATATATTTT
Found at i:7360423 original size:5 final size:5
Alignment explanation
Indices: 7360415--7360462 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
7360405 AATTTATTTC
*
7360415 ATAAT ATAAT ATAAT ATAATT ATAAT ATAAT -CAAT -TAAT AATAAT ATA
1 ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT -ATAAT ATA
7360463 TAATATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 6 0.16
5 23 0.61
6 9 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:7360439 original size:21 final size:23
Alignment explanation
Indices: 7360415--7360473 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 23
7360405 AATTTATTTC
7360415 ATAATATAATATAAT-ATAAT-T
1 ATAATATAATATAATAATAATAT
7360436 ATAATATAATCAATTAATAATAATAT
1 ATAATATAAT--A-TAATAATAATAT
7360462 ATAATAT-ATATA
1 ATAATATAATATA
7360474 CCCAAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 10 0.30
22 2 0.06
23 2 0.06
24 4 0.12
25 7 0.21
26 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
ATAATATAATATAATAATAATAT
Found at i:7360472 original size:11 final size:11
Alignment explanation
Indices: 7360418--7360473 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
7360408 TTATTTCATA
7360418 ATATAATATA-
1 ATATAATATAT
7360428 ATATAAT-TAT
1 ATATAATATAT
7360438 AATATAATCA-AT
1 -ATATAAT-ATAT
7360450 -TAATAATA-AT
1 AT-ATAATATAT
7360460 ATATAATATAT
1 ATATAATATAT
7360471 ATA
1 ATA
7360474 CCCAAGAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
9 2 0.05
10 17 0.44
11 18 0.46
12 2 0.05
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATAATATAT
Found at i:7360994 original size:89 final size:89
Alignment explanation
Indices: 7360843--7361022 Score: 351
Period size: 89 Copynumber: 2.0 Consensus size: 89
7360833 AATCTAGAAC
7360843 AAAATCTATTTGGAGAACCTATATATGTATAAATACACATAGTATGATTCAAACCTGAGTAGAAA
1 AAAATCTATTTGGAGAACCTATATATGTATAAATACACATAGTATGATTCAAACCTGAGTAGAAA
7360908 CCTTAGCCTTTACTAACACTACTG
66 CCTTAGCCTTTACTAACACTACTG
*
7360932 AAAATCTATTTGGAGAACCTATATATGTATAAATATACATAGTATGATTCAAACCTGAGTAGAAA
1 AAAATCTATTTGGAGAACCTATATATGTATAAATACACATAGTATGATTCAAACCTGAGTAGAAA
7360997 CCTTAGCCTTTACTAACACTACTG
66 CCTTAGCCTTTACTAACACTACTG
7361021 AA
1 AA
7361023 TCTTTTCCAT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (89 bp):
AAAATCTATTTGGAGAACCTATATATGTATAAATACACATAGTATGATTCAAACCTGAGTAGAAA
CCTTAGCCTTTACTAACACTACTG
Found at i:7362767 original size:3 final size:3
Alignment explanation
Indices: 7362759--7362791 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
7362749 CTGTTTTCAT
*
7362759 GAA GAA GAA GAA GAA GAA GAA GAA GAT GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7362792 TGATGGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:7364481 original size:25 final size:24
Alignment explanation
Indices: 7364453--7364499 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
7364443 ATTTTCATCA
7364453 AATTACTAA-ATTCAAATTTAAAAAT
1 AATTA-TAATATT-AAATTTAAAAAT
*
7364478 AATTATAATATTTAATTTAAAA
1 AATTATAATATTAAATTTAAAA
7364500 TTATTTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTATAATATTAAATTTAAAAAT
Found at i:7366784 original size:30 final size:27
Alignment explanation
Indices: 7366748--7366818 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 27
7366738 ATGAATAAAC
7366748 AAAGAAAGAAACAAAATGAAATAAAAAAGG
1 AAAGAAAGAAACAAAA--AAA-AAAAAAGG
7366778 AAAGAAAGAAAAGACAAAAAAAAAAAAAGG
1 AAAGAAAG--AA-ACAAAAAAAAAAAAAGG
7366808 AAAGAAAGAAA
1 AAAGAAAGAAA
7366819 GGAGAAAAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
27 1 0.03
28 2 0.05
30 24 0.63
31 3 0.08
32 2 0.05
33 6 0.16
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (27 bp):
AAAGAAAGAAACAAAAAAAAAAAAAGG
Found at i:7366799 original size:26 final size:25
Alignment explanation
Indices: 7366736--7366814 Score: 79
Period size: 26 Copynumber: 3.1 Consensus size: 25
7366726 ACAAATAAAT
* * *
7366736 AAATGAATAAACAAAGAAAGAAACA
1 AAATGAAAAAAAAAAGAAAGAAAGA
*
7366761 AAATGAAATAAAAAAGGAAAGAAAGA
1 AAATGAAA-AAAAAAAGAAAGAAAGA
*
7366787 AAA-GACAAAAAAAAAAAAAGGAAAGA
1 AAATGA-AAAAAAAAAGAAA-GAAAGA
7366813 AA
1 AA
7366815 GAAAGGAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
25 18 0.40
26 27 0.60
ACGTcount: A:0.76, C:0.04, G:0.15, T:0.05
Consensus pattern (25 bp):
AAATGAAAAAAAAAAGAAAGAAAGA
Found at i:7366827 original size:30 final size:30
Alignment explanation
Indices: 7366770--7366827 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
7366760 AAAATGAAAT
7366770 AAAAAAGGAAAGAAAGAAAAGACAAAAAAA
1 AAAAAAGGAAAGAAAGAAAAGACAAAAAAA
* *
7366800 AAAAAAGGAAAGAAAGAAAGGAGAAAAA
1 AAAAAAGGAAAGAAAGAAAAGACAAAAA
7366828 CAAGGCTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.78, C:0.02, G:0.21, T:0.00
Consensus pattern (30 bp):
AAAAAAGGAAAGAAAGAAAAGACAAAAAAA
Found at i:7367504 original size:16 final size:16
Alignment explanation
Indices: 7367483--7367535 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
7367473 TTGACATTGA
7367483 ATTGAATTAAAGGTTG
1 ATTGAATTAAAGGTTG
7367499 ATTGAA-T---GGATTG
1 ATTGAATTAAAGG-TTG
7367512 AATTGAATTAAAGGTTG
1 -ATTGAATTAAAGGTTG
7367529 ATTGAAT
1 ATTGAAT
7367536 GGATTGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
12 2 0.06
13 3 0.10
14 6 0.19
15 2 0.06
16 13 0.42
17 3 0.10
18 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
ATTGAATTAAAGGTTG
Found at i:7367512 original size:30 final size:30
Alignment explanation
Indices: 7367478--7367547 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
7367468 GCACTTTGAC
7367478 ATTGAATTGAATTAAAGGTTGATTGAATGG
1 ATTGAATTGAATTAAAGGTTGATTGAATGG
7367508 ATTGAATTGAATTAAAGGTTGATTGAATGG
1 ATTGAATTGAATTAAAGGTTGATTGAATGG
7367538 ATTGAATTGA
1 ATTGAATTGA
7367548 TATATATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (30 bp):
ATTGAATTGAATTAAAGGTTGATTGAATGG
Found at i:7369908 original size:26 final size:26
Alignment explanation
Indices: 7369879--7369936 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
7369869 CCCGATATAT
7369879 GGCTCTTCGTCAGCTTCCCAATTAAA
1 GGCTCTTCGTCAGCTTCCCAATTAAA
* * ** *
7369905 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTCAGCTTCCCAATTAAA
7369931 GGCTCT
1 GGCTCT
7369937 CTAGAGCTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (26 bp):
GGCTCTTCGTCAGCTTCCCAATTAAA
Found at i:7370015 original size:25 final size:25
Alignment explanation
Indices: 7369890--7370017 Score: 84
Period size: 25 Copynumber: 5.2 Consensus size: 25
7369880 GCTCTTCGTC
** *
7369890 AGCTTCCCAATTAAAGGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTTG-G
* *
7369916 AGCTTCCTGATTAATGGCTCTCTAG
1 AGCTTCCTGATTAATGGCTCTTTGG
* * *
7369941 AGCTTCCCGA-T-ATAGCTCGCTT-G
1 AGCTTCCTGATTAATGGCTC-TTTGG
* * **
7369964 AACTTCCTGA-TATATGGCTATCCGG
1 AGCTTCCTGATTA-ATGGCTCTTTGG
*
7369989 AGCTTCCTAATTAATGGCTCTTTGG
1 AGCTTCCTGATTAATGGCTCTTTGG
7370014 AGCT
1 AGCT
7370018 ACCCGTTATT
Statistics
Matches: 76, Mismatches: 21, Indels: 11
0.70 0.19 0.10
Matches are distributed among these distances:
23 16 0.21
24 2 0.03
25 37 0.49
26 21 0.28
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (25 bp):
AGCTTCCTGATTAATGGCTCTTTGG
Found at i:7370062 original size:24 final size:25
Alignment explanation
Indices: 7370035--7370093 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
7370025 ATTGGCTCGC
7370035 ATAAGCTTCCCGA-T-TATAGCTCT-T
1 ATAAGCTTCCC-ATTATATAGC-CTAT
* *
7370059 ATAAGTTTTCCATTATATAGCCTAT
1 ATAAGCTTCCCATTATATAGCCTAT
7370084 ATAAGCTTCC
1 ATAAGCTTCC
7370094 TGTTACATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
23 1 0.04
24 12 0.43
25 15 0.54
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (25 bp):
ATAAGCTTCCCATTATATAGCCTAT
Found at i:7381527 original size:21 final size:21
Alignment explanation
Indices: 7381502--7381570 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
7381492 TATAATGATT
7381502 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
7381523 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
7381543 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
7381563 ATTATTAT
1 ATTATTAT
7381571 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:7381583 original size:15 final size:14
Alignment explanation
Indices: 7381557--7381587 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7381547 TATGGTTTTA
7381557 TATTAGATTATTAT
1 TATTAGATTATTAT
7381571 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
7381586 TA
1 TA
7381588 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:7381926 original size:14 final size:14
Alignment explanation
Indices: 7381902--7381934 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7381892 AAGAATTAAG
7381902 GAAACAAAGAAACA
1 GAAACAAAGAAACA
7381916 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
7381930 GAAAC
1 GAAAC
7381935 GAAGTAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:7385396 original size:20 final size:20
Alignment explanation
Indices: 7385359--7385396 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7385349 TGATGGGGAG
*
7385359 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
7385379 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
7385397 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:7387346 original size:46 final size:46
Alignment explanation
Indices: 7387294--7387613 Score: 561
Period size: 46 Copynumber: 7.0 Consensus size: 46
7387284 AGTGTGCTCT
7387294 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7387340 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7387386 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7387432 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7387478 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7387524 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
7387570 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7387614 TCATGTCAAA
Statistics
Matches: 267, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
45 1 0.00
46 266 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7391824 original size:16 final size:16
Alignment explanation
Indices: 7391803--7391833 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7391793 GATATTTTAA
7391803 TATATTATATTAATAT
1 TATATTATATTAATAT
*
7391819 TATATTATGTTAATA
1 TATATTATATTAATA
7391834 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:7391930 original size:12 final size:12
Alignment explanation
Indices: 7391913--7391943 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7391903 GAAGCAGGGG
7391913 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
7391925 AGAAAAAGGGAA
1 AGAAAAAGAGAA
7391937 AGAAAAA
1 AGAAAAA
7391944 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:7411733 original size:18 final size:18
Alignment explanation
Indices: 7411712--7411750 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7411702 TTTTAGATTA
*
7411712 AATTTTATTTTTAAAAT-T
1 AATTTT-TTTTAAAAATAT
7411730 AATTTTTTTTAAAAATAT
1 AATTTTTTTTAAAAATAT
7411748 AAT
1 AAT
7411751 ACACTAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTTTTTTTAAAAATAT
Found at i:7411862 original size:39 final size:39
Alignment explanation
Indices: 7411819--7411906 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
7411809 TAAAAAGTGT
*
7411819 TTATATTAAAAAACACTACCATAAATA-AA-AAAAATTTTA
1 TTATATTAAAAAACA-TA-AATAAATATAATAAAAATTTTA
* *
7411858 TTATATTAAAAAATATAAATAAATATAATAAATATTTTA
1 TTATATTAAAAAACATAAATAAATATAATAAAAATTTTA
*
7411897 TTGTATTAAA
1 TTATATTAAA
7411907 TTAAAATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 7 0.16
38 4 0.09
39 32 0.74
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.38
Consensus pattern (39 bp):
TTATATTAAAAAACATAAATAAATATAATAAAAATTTTA
Found at i:7424429 original size:21 final size:19
Alignment explanation
Indices: 7424405--7424446 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
7424395 GTAACTTTTA
7424405 ATGTTTACATTATAATATTAT
1 ATGTTTA-ATT-TAATATTAT
*
7424426 ATGTTTAATTTAATTTTAT
1 ATGTTTAATTTAATATTAT
7424445 AT
1 AT
7424447 AAATTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 3 0.15
21 7 0.35
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (19 bp):
ATGTTTAATTTAATATTAT
Found at i:7429110 original size:2 final size:2
Alignment explanation
Indices: 7429103--7429157 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
7429093 TCATCTTTCT
* *
7429103 TC TC TC TC TC TC TC GC TC TC GC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7429145 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
7429158 GTCACTAAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.04, T:0.47
Consensus pattern (2 bp):
TC
Found at i:7434063 original size:2 final size:2
Alignment explanation
Indices: 7434051--7434094 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
7434041 ATTTCAGGTT
*
7434051 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7434093 GA
1 GA
7434095 ATATGTGAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7437296 original size:17 final size:17
Alignment explanation
Indices: 7437277--7437312 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
7437267 AAGAAGGTAT
7437277 AAATATTATTAAATATTAA
1 AAATA-TATT-AATATTAA
7437296 AAATATATTAATATTAA
1 AAATATATTAATATTAA
7437313 TATAAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 4 0.24
19 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATATTAATATTAA
Found at i:7437355 original size:20 final size:18
Alignment explanation
Indices: 7437322--7437358 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
7437312 ATATAAACTT
7437322 ATAAAAATTTTAAAATTA
1 ATAAAAATTTTAAAATTA
7437340 ATAAAATATATTTAAAATT
1 ATAAAA-AT-TTTAAAATT
7437359 TTATAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAAAAATTTTAAAATTA
Found at i:7437364 original size:47 final size:47
Alignment explanation
Indices: 7437274--7437428 Score: 120
Period size: 47 Copynumber: 3.2 Consensus size: 47
7437264 TATAAGAAGG
* *
7437274 TATAAATATTATTAAATATTAAAAATATATTAATATTAATATAAACT
1 TATAAAAATTATTAAATATTAAAAATATATTAAAATTAATATAAACT
* * *
7437321 TATAAAAATT-TTAAA-ATTAATAAAATATATTTAAAATTTTATAAAAAAAT
1 TATAAAAATTATTAAATATT-A-AAAATATA-TTAAAA-TTAAT-ATAAACT
* * * *
7437371 GTATTAAATTCTATAGAAATCA-TAAAAA-GTATTAAAATTAATATAAACT
1 -TATAAAAAT-TAT-TAAAT-ATTAAAAATATATTAAAATTAATATAAACT
7437420 TATAAAAAT
1 TATAAAAAT
7437429 ATAAATTAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
45 3 0.04
46 6 0.07
47 17 0.20
48 12 0.14
49 9 0.11
50 9 0.11
51 13 0.16
52 3 0.04
53 5 0.06
54 4 0.05
55 1 0.01
56 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.39
Consensus pattern (47 bp):
TATAAAAATTATTAAATATTAAAAATATATTAAAATTAATATAAACT
Found at i:7437443 original size:16 final size:16
Alignment explanation
Indices: 7437410--7437442 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7437400 TATTAAAATT
*
7437410 AATATAAACTTATAAA
1 AATATAAACTTAAAAA
7437426 AATATAAA-TTAAAAA
1 AATATAAACTTAAAAA
7437441 AA
1 AA
7437443 ACATTAAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AATATAAACTTAAAAA
Found at i:7437967 original size:18 final size:18
Alignment explanation
Indices: 7437944--7437996 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
7437934 TTTTACAATT
*
7437944 TATTTATAATTTATTA-GA
1 TATTTATAATTT-TTATAA
*
7437962 TTTTTAT-ATTTTTATAA
1 TATTTATAATTTTTATAA
*
7437979 TATTTATAATTTTAATAA
1 TATTTATAATTTTTATAA
7437997 GTTTATATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 3 0.10
17 11 0.38
18 15 0.52
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTTATAATTTTTATAA
Found at i:7441622 original size:25 final size:25
Alignment explanation
Indices: 7441594--7441642 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7441584 ATAAATAAAA
*
7441594 TTTTAAAATTATAATTA-TTAATTTT
1 TTTTAAAATT-TAATAATTTAATTTT
*
7441619 TTTTAGAATTTAATAATTTAATTT
1 TTTTAAAATTTAATAATTTAATTT
7441643 AAGTTCGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTTAAAATTTAATAATTTAATTTT
Found at i:7447593 original size:24 final size:24
Alignment explanation
Indices: 7447566--7447617 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
7447556 AACATGATAG
7447566 CACTGAAGTCAATTACAAGACAAA
1 CACTGAAGTCAATTACAAGACAAA
7447590 CACTGAAGTCAATTACAAGACAAA
1 CACTGAAGTCAATTACAAGACAAA
7447614 CACT
1 CACT
7447618 ACAATAGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.48, C:0.23, G:0.12, T:0.17
Consensus pattern (24 bp):
CACTGAAGTCAATTACAAGACAAA
Found at i:7457265 original size:39 final size:39
Alignment explanation
Indices: 7457222--7457299 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7457212 AAACAACATG
7457222 AAATAAAGAAAACTAATGTAAGTGGAAGAATAATCAATC
1 AAATAAAGAAAACTAATGTAAGTGGAAGAATAATCAATC
*
7457261 AAATAAAGAAAATTAATGTAAGTGGAAGAATAATCAATC
1 AAATAAAGAAAACTAATGTAAGTGGAAGAATAATCAATC
7457300 TTGGGACTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.22
Consensus pattern (39 bp):
AAATAAAGAAAACTAATGTAAGTGGAAGAATAATCAATC
Found at i:7457455 original size:28 final size:27
Alignment explanation
Indices: 7457415--7457473 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
7457405 ACACCCTCAC
***
7457415 AAAAAACGACTTATTTGCCTAAATTAAA
1 AAAAAACGACTTAAAGGCCT-AATTAAA
7457443 AAAAAAC-AGCTTAAAGGCCTAATTAAA
1 AAAAAACGA-CTTAAAGGCCTAATTAAA
7457470 AAAA
1 AAAA
7457474 TGGCCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.56, C:0.14, G:0.08, T:0.22
Consensus pattern (27 bp):
AAAAAACGACTTAAAGGCCTAATTAAA
Found at i:7458079 original size:11 final size:11
Alignment explanation
Indices: 7458063--7458087 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7458053 GGGTGGATGT
7458063 AAATTTTGCGG
1 AAATTTTGCGG
7458074 AAATTTTGCGG
1 AAATTTTGCGG
7458085 AAA
1 AAA
7458088 ATGAAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (11 bp):
AAATTTTGCGG
Found at i:7463275 original size:3 final size:3
Alignment explanation
Indices: 7463269--7463295 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7463259 TTAATAAAAA
7463269 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
7463296 TAATATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7469921 original size:18 final size:18
Alignment explanation
Indices: 7469868--7469999 Score: 110
Period size: 18 Copynumber: 7.4 Consensus size: 18
7469858 ATCTTTATTG
*
7469868 TTCAGTAACAGTC-AGTCA
1 TTCAGTAACAGTCGA-TTA
* * *
7469886 -TCAGTAATAATCAATTA
1 TTCAGTAACAGTCGATTA
* *
7469903 TTCAGTAACGGTCGTTTA
1 TTCAGTAACAGTCGATTA
* * *
7469921 TTCAATATCAGTCAATTA
1 TTCAGTAACAGTCGATTA
* *
7469939 TTCAGTAGCAG-CCAGTTA
1 TTCAGTAACAGTCGA-TTA
7469957 TTCAGTAACAGTC-ATTGA
1 TTCAGTAACAGTCGATT-A
7469975 TTCAGTAACAGTCGATTA
1 TTCAGTAACAGTCGATTA
7469993 TTCAGTA
1 TTCAGTA
7470000 GTGGTTAATT
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
17 16 0.18
18 71 0.78
19 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (18 bp):
TTCAGTAACAGTCGATTA
Found at i:7469997 original size:36 final size:37
Alignment explanation
Indices: 7469868--7469999 Score: 132
Period size: 36 Copynumber: 3.7 Consensus size: 37
7469858 ATCTTTATTG
* * *
7469868 TTCAGTAACAGTC-AGTCA-TCAGTAATAATCAATTA
1 TTCAGTAACAGTCGAGTTATTCAGTAACAGTCAATTA
* * * *
7469903 TTCAGTAACGGTCG-TTTATTCAATATCAGTCAATTA
1 TTCAGTAACAGTCGAGTTATTCAGTAACAGTCAATTA
* *
7469939 TTCAGTAGCAG-CCAGTTATTCAGTAACAGTC-ATTGA
1 TTCAGTAACAGTCGAGTTATTCAGTAACAGTCAATT-A
7469975 TTCAGTAACAGTCGA-TTATTCAGTA
1 TTCAGTAACAGTCGAGTTATTCAGTA
7470000 GTGGTTAATT
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
35 18 0.23
36 57 0.74
37 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (37 bp):
TTCAGTAACAGTCGAGTTATTCAGTAACAGTCAATTA
Found at i:7470196 original size:6 final size:6
Alignment explanation
Indices: 7470185--7470216 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7470175 ACAAATCCAG
*
7470185 AACAGT AACAGT AATAGT AACAGT AACAGT AA
1 AACAGT AACAGT AACAGT AACAGT AACAGT AA
7470217 GGTACGGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (6 bp):
AACAGT
Found at i:7470245 original size:63 final size:59
Alignment explanation
Indices: 7470128--7470261 Score: 180
Period size: 63 Copynumber: 2.2 Consensus size: 59
7470118 TACACAGCAT
* *
7470128 CAGTAACAGTAATAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCAGAA
1 CAGTAACAGTAATAGTAACAGTACAGTACATAGAGTACCTCATCGGAACAAATCCAGAA
* *
7470187 CAGTAACAGTAATAGTAACAGTAACAGTA-AGGTACGGAGTACCTCTTCGGAACAAATCCGGAA
1 CAGTAACAGTAATAGTAACAGT-ACAGTACA--TA--GAGTACCTCATCGGAACAAATCCAGAA
7470250 CAGTAACAGTAA
1 CAGTAACAGTAA
7470262 GGCGACACTT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
59 22 0.33
60 5 0.08
61 2 0.03
63 37 0.56
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (59 bp):
CAGTAACAGTAATAGTAACAGTACAGTACATAGAGTACCTCATCGGAACAAATCCAGAA
Found at i:7472902 original size:15 final size:14
Alignment explanation
Indices: 7472870--7472936 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
7472860 CCAGAAAAGT
7472870 AAATCATTTTCCAG
1 AAATCATTTTCCAG
7472884 AAATCATTTTCCAAG
1 AAATCATTTTCC-AG
* *
7472899 AAATTATTTTTCAG
1 AAATCATTTTCCAG
*
7472913 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
7472927 AAAACATTTT
1 AAATCATTTT
7472937 ACCTGCAAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 34 0.74
15 12 0.26
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:7473793 original size:33 final size:33
Alignment explanation
Indices: 7473751--7473813 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
7473741 CCATTTGGTC
*
7473751 TAATTTCATTTTAAAACCTCCTATTAAAAGGTA
1 TAATTTCATTTTAAAACATCCTATTAAAAGGTA
*
7473784 TAATTTCATTTTAGAACATCCTATTAAAAG
1 TAATTTCATTTTAAAACATCCTATTAAAAG
7473814 AACAACAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (33 bp):
TAATTTCATTTTAAAACATCCTATTAAAAGGTA
Found at i:7479686 original size:15 final size:16
Alignment explanation
Indices: 7479663--7479695 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7479653 AAAGGTCTAC
*
7479663 AAGTTAAAA-TAAATA
1 AAGTGAAAAGTAAATA
7479678 AAGTGAAAAGTAAATA
1 AAGTGAAAAGTAAATA
7479694 AA
1 AA
7479696 TTAAATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAGTGAAAAGTAAATA
Found at i:7479790 original size:28 final size:28
Alignment explanation
Indices: 7479759--7479812 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
7479749 ATTAAATAGT
*
7479759 TAAATAAAAGT-ATAAAAATTAAAATAAA
1 TAAAT-AAAGTAATAAAAAATAAAATAAA
7479787 TAAATAAAGTAATAAAAAATAAAATA
1 TAAATAAAGTAATAAAAAATAAAATA
7479813 TAGATGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (28 bp):
TAAATAAAGTAATAAAAAATAAAATAAA
Found at i:7487049 original size:3 final size:3
Alignment explanation
Indices: 7487041--7487074 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7487031 TTGCTTTAGA
7487041 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
7487075 TTGCATCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:7487715 original size:5 final size:5
Alignment explanation
Indices: 7487705--7487739 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
7487695 AAATTTGTAA
* *
7487705 TATAT TATAT TATAT TATAT TATTT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
7487740 AAATTGTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TATAT
Found at i:7497400 original size:30 final size:30
Alignment explanation
Indices: 7497366--7497438 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
7497356 TTGATCTTTC
*
7497366 TAAAAAT-AGTAAAAACTTGATTTAACCCTT
1 TAAAAATGA-TAAAAACTTGACTTAACCCTT
** *
7497396 TAAAAATGATAAAATTTTGACTTAACTCTT
1 TAAAAATGATAAAAACTTGACTTAACCCTT
*
7497426 TAAAAATTATAAA
1 TAAAAATGATAAA
7497439 GATATAAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 36 0.97
31 1 0.03
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (30 bp):
TAAAAATGATAAAAACTTGACTTAACCCTT
Found at i:7499313 original size:11 final size:11
Alignment explanation
Indices: 7499299--7499347 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
7499289 ATATCCAAAT
*
7499299 AATAACATCAA
1 AATAATATCAA
*
7499310 AATAGTATCAA
1 AATAATATCAA
*
7499321 TATAATATCAA
1 AATAATATCAA
* *
7499332 AATGATAGCAA
1 AATAATATCAA
7499343 AATAA
1 AATAA
7499348 CGAAAAAATA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.24
Consensus pattern (11 bp):
AATAATATCAA
Found at i:7499805 original size:22 final size:21
Alignment explanation
Indices: 7499767--7499824 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 21
7499757 TTAATTATTA
7499767 TAAAATATAATTATTATAAATT
1 TAAAATATAATT-TTATAAATT
*
7499789 TAAATATATAATTTTATATATT
1 TAAA-ATATAATTTTATAAATT
7499811 TAAAATA-AATTTTA
1 TAAAATATAATTTTA
7499825 ATTGAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.21
21 3 0.09
22 16 0.47
23 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAAATATAATTTTATAAATT
Found at i:7506870 original size:23 final size:20
Alignment explanation
Indices: 7506844--7506895 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 20
7506834 TATATTATTA
7506844 AAAATATATATTTAAATTGTAAT
1 AAAATATATATTT--ATTGT-AT
7506867 AAAAT-TAATATTTATTGTAT
1 AAAATAT-ATATTTATTGTAT
*
7506887 AAAAAATAT
1 AAAATATAT
7506896 GTTGAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 8 0.31
21 6 0.23
22 1 0.04
23 11 0.42
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
AAAATATATATTTATTGTAT
Found at i:7506891 original size:21 final size:22
Alignment explanation
Indices: 7506842--7506895 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
7506832 ATTATATTAT
7506842 TAAAAATATATATTTAAATTGTAA
1 TAAAAATATATATTT-AATTGT-A
*
7506866 TAAAATTA-ATATTT-ATTGTA
1 TAAAAATATATATTTAATTGTA
7506886 TAAAAA-ATAT
1 TAAAAATATAT
7506896 GTTGAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 1 0.04
20 8 0.30
21 5 0.19
23 6 0.22
24 7 0.26
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
TAAAAATATATATTTAATTGTA
Found at i:7508944 original size:43 final size:43
Alignment explanation
Indices: 7508891--7509073 Score: 303
Period size: 43 Copynumber: 4.3 Consensus size: 43
7508881 CGCCACAAAA
* *
7508891 CTAAAGGTCATGGCCTTTAGCGGCGCTTTTCCCACAAATGCCG
1 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCG
*
7508934 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCTCACAAACGCCG
1 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCG
* * *
7508977 CTAAAGGTCATGGCCTTTAACGGCGCTTTTCCTACAAACGCCG
1 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCG
*
7509020 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAATGCCG
1 CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCG
7509063 CTAAATGTCAT
1 CTAAATGTCAT
7509074 AAATTCAAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (43 bp):
CTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCACAAACGCCG
Found at i:7509370 original size:18 final size:19
Alignment explanation
Indices: 7509333--7509373 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7509323 ATTTAGAATC
7509333 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
7509352 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
7509370 AAAA
1 AAAA
7509374 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:7509375 original size:31 final size:31
Alignment explanation
Indices: 7509299--7509372 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
7509289 TCAAATTATC
*
7509299 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
7509331 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
7509361 TTAAATATAAAA
1 TTAAATATAAAA
7509373 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:7510958 original size:12 final size:12
Alignment explanation
Indices: 7510941--7510965 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7510931 ATCTACATAC
7510941 AGAAGATATTAA
1 AGAAGATATTAA
7510953 AGAAGATATTAA
1 AGAAGATATTAA
7510965 A
1 A
7510966 ACGCATAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (12 bp):
AGAAGATATTAA
Found at i:7513705 original size:887 final size:887
Alignment explanation
Indices: 7511991--7513766 Score: 3543
Period size: 887 Copynumber: 2.0 Consensus size: 887
7511981 TAAACTTCCA
7511991 GAACAGTGAACTGTAAGAAAAATGATATAAAATTTGAGATCAAAATCATTCAATGACAATTAACT
1 GAACAGTGAACTGTAAGAAAAATGATATAAAATTTGAGATCAAAATCATTCAATGACAATTAACT
7512056 CTCTGAATTTATACGTAAATAATTTGACCAAAAGAAAAGGAGAGAAGAGTTAAATAGCATTCAAA
66 CTCTGAATTTATACGTAAATAATTTGACCAAAAGAAAAGGAGAGAAGAGTTAAATAGCATTCAAA
7512121 GACTCATACAAAATTCAAGAAACAAACATCAGAGACTGAAAATGGTGTTGGTCTGGTGTATCAGA
131 GACTCATACAAAATTCAAGAAACAAACATCAGAGACTGAAAATGGTGTTGGTCTGGTGTATCAGA
7512186 GGATATCATTAAAACACTGCACAGTCCCACAACATGAAGTTAAGACCTTAAGCTGCTATCTGAGC
196 GGATATCATTAAAACACTGCACAGTCCCACAACATGAAGTTAAGACCTTAAGCTGCTATCTGAGC
7512251 CATTCTACTCGTAAGAATATATGATTTTCTTATGATTTGACCCAAAAATGTAGAAAATATTTAAA
261 CATTCTACTCGTAAGAATATATGATTTTCTTATGATTTGACCCAAAAATGTAGAAAATATTTAAA
*
7512316 TAGCATTCCCTTTCTTTGATATTCAATATATATACATAAGGAAAAAAACATTATGCTTTAAAATA
326 TAGCATTCCCTTTCTTTGATATTCAATATATATACATAAGGAAAAAAAAATTATGCTTTAAAATA
7512381 ATTATTAATAATTATTGAACAATGCATGCTCTCAAGGATTAAGATTGCGAACTACCACCACCAAC
391 ATTATTAATAATTATTGAACAATGCATGCTCTCAAGGATTAAGATTGCGAACTACCACCACCAAC
7512446 GATCTCAGTACAGAGTTGGGCAGGGTAACAAAGAAAGTGTGTCAACGAGAAGAAGATTCGCCGAA
456 GATCTCAGTACAGAGTTGGGCAGGGTAACAAAGAAAGTGTGTCAACGAGAAGAAGATTCGCCGAA
7512511 TGGGAGTGATGTAGCCACGGATTAGGAGGTTGCTCGAGTCTCCTTCAAAGATAATGTGCAGAGTC
521 TGGGAGTGATGTAGCCACGGATTAGGAGGTTGCTCGAGTCTCCTTCAAAGATAATGTGCAGAGTC
7512576 AAGGTGCCGGATTTGAGAATAAAAAGTTAGTTACTAAAGATGATGGTTTTGTTCTCCATATCAAA
586 AAGGTGCCGGATTTGAGAATAAAAAGTTAGTTACTAAAGATGATGGTTTTGTTCTCCATATCAAA
7512641 AGCTGTATATTTTACAAACTAAACACACAAAATTGGAACTAAATCATTGGAATATTTGCTAATAT
651 AGCTGTATATTTTACAAACTAAACACACAAAATTGGAACTAAATCATTGGAATATTTGCTAATAT
7512706 AACAAAACCAAACCAAACCCAGGACAAAGGGTAACATCACCAACTTAAAGTTAGACATAAGAAAC
716 AACAAAACCAAACCAAACCCAGGACAAAGGGTAACATCACCAACTTAAAGTTAGACATAAGAAAC
7512771 AGTCTAGACAGTAAAAACAAGGCCACTCCCAAGACTTAAGTAACCCAACTAAAAAAAAAAAAACA
781 AGTCTAGACAGTAAAAACAAGGCCACTCCCAAGACTTAAGTAACCCAACTAAAAAAAAAAAAACA
7512836 TTTCTTATATCCTTTTGCTTCCAACCCCATCATCATTGATTT
846 TTTCTTATATCCTTTTGCTTCCAACCCCATCATCATTGATTT
7512878 GAACAGTGAACTGTAAGAAAAATGATATAAAATTTGAGATCAAAATCATTCAATGACAATTAACT
1 GAACAGTGAACTGTAAGAAAAATGATATAAAATTTGAGATCAAAATCATTCAATGACAATTAACT
7512943 CTCTGAATTTATACGTAAATAATTTGACCAAAAGAAAAGGAGAGAAGAGTTAAATAGCATTCAAA
66 CTCTGAATTTATACGTAAATAATTTGACCAAAAGAAAAGGAGAGAAGAGTTAAATAGCATTCAAA
7513008 GACTCATACAAAATTCAAGAAACAAACATCAGAGACTGAAAATGGTGTTGGTCTGGTGTATCAGA
131 GACTCATACAAAATTCAAGAAACAAACATCAGAGACTGAAAATGGTGTTGGTCTGGTGTATCAGA
7513073 GGATATCATTAAAACACTGCACAGTCCCACAACATGAAGTTAAGACCTTAAGCTGCTATCTGAGC
196 GGATATCATTAAAACACTGCACAGTCCCACAACATGAAGTTAAGACCTTAAGCTGCTATCTGAGC
7513138 CATTCTACTCGTAAGAATATATGATTTTCTTATGATTTGACCCAAAAATGTAGAAAATATTTAAA
261 CATTCTACTCGTAAGAATATATGATTTTCTTATGATTTGACCCAAAAATGTAGAAAATATTTAAA
7513203 TAGCATTCCCTTTCTTTGATATTCAATATATATACATAAGGAAAAAAAAATTATGCTTTAAAATA
326 TAGCATTCCCTTTCTTTGATATTCAATATATATACATAAGGAAAAAAAAATTATGCTTTAAAATA
7513268 ATTATTAATAATTATTGAACAATGCATGCTCTCAAGGATTAAGATTGCGAACTACCACCACCAAC
391 ATTATTAATAATTATTGAACAATGCATGCTCTCAAGGATTAAGATTGCGAACTACCACCACCAAC
7513333 GATCTCAGTACAGAGTTGGGCAGGGTAACAAAGAAAGTGTGTCAACGAGAAGAAGATTCGCCGAA
456 GATCTCAGTACAGAGTTGGGCAGGGTAACAAAGAAAGTGTGTCAACGAGAAGAAGATTCGCCGAA
7513398 TGGGAGTGATGTAGCCACGGATTAGGAGGTTGCTCGAGTCTCCTTCAAAGATAATGTGCAGAGTC
521 TGGGAGTGATGTAGCCACGGATTAGGAGGTTGCTCGAGTCTCCTTCAAAGATAATGTGCAGAGTC
7513463 AAGGTGCCGGATTTGAGAATAAAAAGTTAGTTACTAAAGATGATGGTTTTGTTCTCCATATCAAA
586 AAGGTGCCGGATTTGAGAATAAAAAGTTAGTTACTAAAGATGATGGTTTTGTTCTCCATATCAAA
7513528 AGCTGTATATTTTACAAACTAAACACACAAAATTGGAACTAAATCATTGGAATATTTGCTAATAT
651 AGCTGTATATTTTACAAACTAAACACACAAAATTGGAACTAAATCATTGGAATATTTGCTAATAT
7513593 AACAAAACCAAACCAAACCCAGGACAAAGGGTAACATCACCAACTTAAAGTTAGACATAAGAAAC
716 AACAAAACCAAACCAAACCCAGGACAAAGGGTAACATCACCAACTTAAAGTTAGACATAAGAAAC
7513658 AGTCTAGACAGTAAAAACAAGGCCACTCCCAAGACTTAAGTAACCCAACTAAAAAAAAAAAAACA
781 AGTCTAGACAGTAAAAACAAGGCCACTCCCAAGACTTAAGTAACCCAACTAAAAAAAAAAAAACA
7513723 TTTCTTATATCCTTTTGCTTCCAACCCCATCATCATTGATTT
846 TTTCTTATATCCTTTTGCTTCCAACCCCATCATCATTGATTT
7513765 GA
1 GA
7513767 TGTGAGAGAT
Statistics
Matches: 888, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
887 888 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (887 bp):
GAACAGTGAACTGTAAGAAAAATGATATAAAATTTGAGATCAAAATCATTCAATGACAATTAACT
CTCTGAATTTATACGTAAATAATTTGACCAAAAGAAAAGGAGAGAAGAGTTAAATAGCATTCAAA
GACTCATACAAAATTCAAGAAACAAACATCAGAGACTGAAAATGGTGTTGGTCTGGTGTATCAGA
GGATATCATTAAAACACTGCACAGTCCCACAACATGAAGTTAAGACCTTAAGCTGCTATCTGAGC
CATTCTACTCGTAAGAATATATGATTTTCTTATGATTTGACCCAAAAATGTAGAAAATATTTAAA
TAGCATTCCCTTTCTTTGATATTCAATATATATACATAAGGAAAAAAAAATTATGCTTTAAAATA
ATTATTAATAATTATTGAACAATGCATGCTCTCAAGGATTAAGATTGCGAACTACCACCACCAAC
GATCTCAGTACAGAGTTGGGCAGGGTAACAAAGAAAGTGTGTCAACGAGAAGAAGATTCGCCGAA
TGGGAGTGATGTAGCCACGGATTAGGAGGTTGCTCGAGTCTCCTTCAAAGATAATGTGCAGAGTC
AAGGTGCCGGATTTGAGAATAAAAAGTTAGTTACTAAAGATGATGGTTTTGTTCTCCATATCAAA
AGCTGTATATTTTACAAACTAAACACACAAAATTGGAACTAAATCATTGGAATATTTGCTAATAT
AACAAAACCAAACCAAACCCAGGACAAAGGGTAACATCACCAACTTAAAGTTAGACATAAGAAAC
AGTCTAGACAGTAAAAACAAGGCCACTCCCAAGACTTAAGTAACCCAACTAAAAAAAAAAAAACA
TTTCTTATATCCTTTTGCTTCCAACCCCATCATCATTGATTT
Found at i:7515336 original size:7 final size:7
Alignment explanation
Indices: 7515326--7515409 Score: 55
Period size: 7 Copynumber: 12.0 Consensus size: 7
7515316 CCATAAACAT
7515326 TAAACCC
1 TAAACCC
7515333 TAAACCC
1 TAAACCC
7515340 TAAACCC
1 TAAACCC
*
7515347 CAAACCC
1 TAAACCC
* *
7515354 TTACACCT
1 -TAAACCC
7515362 TAAACTCC
1 TAAAC-CC
*
7515370 --AACCA
1 TAAACCC
*
7515375 TAACCCC
1 TAAACCC
*
7515382 TAAACCT
1 TAAACCC
* *
7515389 TAAATCA
1 TAAACCC
*
7515396 TAATCCC
1 TAAACCC
7515403 TAAACCC
1 TAAACCC
7515410 ATAATTCATC
Statistics
Matches: 56, Mismatches: 17, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
5 1 0.02
6 3 0.05
7 47 0.84
8 5 0.09
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:7515343 original size:21 final size:22
Alignment explanation
Indices: 7515288--7515344 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
7515278 ACTAATTAAT
* *
7515288 CTAAACCCTAAACTTCTTAACCC
1 CTAAACCCTAAAC-TATTAAACC
*
7515311 CT-ATCCCATAAAC-ATTAAACC
1 CTAAACCC-TAAACTATTAAACC
7515332 CTAAACCCTAAAC
1 CTAAACCCTAAAC
7515345 CCCAAACCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 13 0.46
22 8 0.29
23 7 0.25
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (22 bp):
CTAAACCCTAAACTATTAAACC
Found at i:7515351 original size:21 final size:21
Alignment explanation
Indices: 7515327--7515387 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
7515317 CATAAACATT
7515327 AAACCCTAAACCCTAAACCCC
1 AAACCCTAAACCCTAAACCCC
* * *
7515348 AAACCCTTACACCTTAAACTCC
1 AAACCC-TAAACCCTAAACCCC
* *
7515370 -AACCATAACCCCTAAACC
1 AAACCCTAAACCCTAAACC
7515388 TTAAATCATA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 9 0.29
21 10 0.32
22 12 0.39
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (21 bp):
AAACCCTAAACCCTAAACCCC
Found at i:7515509 original size:46 final size:46
Alignment explanation
Indices: 7515436--7515529 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
7515426 CTTCAAATAC
* * ** *
7515436 TAGTTAACTCTTAAAGCTTAATGCCTAAACCGTATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
7515482 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
7515528 TA
1 TA
7515530 AACCTTAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:7515524 original size:14 final size:14
Alignment explanation
Indices: 7515461--7515539 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
7515451 GCTTAATGCC
*
7515461 TAAACCGTATATCT
1 TAAACCATATATCT
*
7515475 TAAACCATAGTTAACTCA
1 TAAACCATA--T-A-TCT
* * * *
7515493 TAAACCTTAAACCC
1 TAAACCATATATCT
7515507 TAAACCATATATCT
1 TAAACCATATATCT
* *
7515521 TAAACCATAAACCT
1 TAAACCATATATCT
7515535 TAAAC
1 TAAAC
7515540 TGTAATGAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
14 36 0.73
15 1 0.02
16 1 0.02
17 1 0.02
18 10 0.20
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (14 bp):
TAAACCATATATCT
Found at i:7515764 original size:41 final size:41
Alignment explanation
Indices: 7515702--7515984 Score: 401
Period size: 41 Copynumber: 6.9 Consensus size: 41
7515692 TTATATGACT
* * * *
7515702 TTTAGCAGCGTTTTACAAAAAGCGCCGCTAATGCTATGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
*
7515743 TTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
7515784 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
7515825 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
* *
7515866 TTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
* * *
7515907 TTT-GCGGCGTTTTTTTACTAAAA-CGCCGCTATTGCTC-TGTT
1 TTTAGCGGCG---TTTTACCAAAAGCGCCGCTAATGCTCTTGTC
* * *
7515948 TTTAGCAGCGTTTTACCAAAAACGCCGCTATTGCTCT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT
7515985 GTATTTTACA
Statistics
Matches: 222, Mismatches: 14, Indels: 12
0.90 0.06 0.05
Matches are distributed among these distances:
39 10 0.05
40 20 0.09
41 165 0.74
42 17 0.08
43 10 0.05
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
Found at i:7520204 original size:11 final size:11
Alignment explanation
Indices: 7520188--7520217 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
7520178 CATTGTGAAA
7520188 AAAATAAAATT
1 AAAATAAAATT
7520199 AAAATAAAATT
1 AAAATAAAATT
7520210 AAAATAAA
1 AAAATAAA
7520218 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAAAATT
Found at i:7524674 original size:18 final size:18
Alignment explanation
Indices: 7524653--7524687 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7524643 TCTAACAAAC
* *
7524653 ATATTAAATTTTTATTCA
1 ATATCAAATTTTAATTCA
7524671 ATATCAAATTTTAATTC
1 ATATCAAATTTTAATTC
7524688 GGTTGAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATCAAATTTTAATTCA
Found at i:7525792 original size:20 final size:20
Alignment explanation
Indices: 7525769--7525827 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
7525759 AACTCTTTAA
7525769 AAAATAATTTAACTTGATTG
1 AAAATAATTTAACTTGATTG
*
7525789 AAAA-AATTCTAACATGATTG
1 AAAATAATT-TAACTTGATTG
*
7525809 -AAATCATTTTAACTTGATT
1 AAAAT-AATTTAACTTGATT
7525828 TGGAAATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.21
20 23 0.70
21 3 0.09
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (20 bp):
AAAATAATTTAACTTGATTG
Found at i:7526098 original size:15 final size:15
Alignment explanation
Indices: 7526075--7526113 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7526065 CTTTTAATTT
* *
7526075 TTTTCTTTCTTTCTTC
1 TTTT-TTTCTTGCTTA
7526091 TTTTTTTCTTGCTTA
1 TTTTTTTCTTGCTTA
7526106 TTTTTTTC
1 TTTTTTTC
7526114 ATCTTATCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTTTTTCTTGCTTA
Found at i:7530967 original size:22 final size:22
Alignment explanation
Indices: 7530939--7530983 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7530929 GGGTAAGAGG
7530939 TGTTACATTATCATCTAACACC
1 TGTTACATTATCATCTAACACC
7530961 TGTTACATTATCATCTAACACC
1 TGTTACATTATCATCTAACACC
7530983 T
1 T
7530984 AACATGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (22 bp):
TGTTACATTATCATCTAACACC
Found at i:7530993 original size:22 final size:21
Alignment explanation
Indices: 7530943--7530988 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
7530933 AAGAGGTGTT
*
7530943 ACATTATCATCTAACACCTGTT
1 ACATTATCATCTAACACC-GTA
7530965 ACATTATCATCTAACACC-TA
1 ACATTATCATCTAACACCGTA
7530985 ACAT
1 ACAT
7530989 GTTATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
22 18 0.78
ACGTcount: A:0.37, C:0.28, G:0.02, T:0.33
Consensus pattern (21 bp):
ACATTATCATCTAACACCGTA
Found at i:7533549 original size:21 final size:23
Alignment explanation
Indices: 7533502--7533555 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
7533492 CATTCAAGAT
**
7533502 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
7533525 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
7533546 AAAAT-ATATA
1 AAAATAATATA
7533556 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:7533602 original size:25 final size:24
Alignment explanation
Indices: 7533564--7533676 Score: 65
Period size: 24 Copynumber: 4.6 Consensus size: 24
7533554 TAATGTGTAA
*
7533564 AAAAAGTTTGAAAT-ACATAATATAT
1 AAAAA-TTTAAAATAAC-TAATATAT
* *
7533589 GAAAATATTAAAATAACTAATGTAT
1 AAAAAT-TTAAAATAACTAATATAT
*
7533614 AAAAATTTAAAATGAGCGT--TATAT
1 AAAAATTTAAAAT-AAC-TAATATAT
* *
7533638 AAAAAGTTAAAATAGA-TAATA-ACA
1 AAAAATTTAAAATA-ACTAATATA-T
*
7533662 AAAAATGTAAAATAA
1 AAAAATTTAAAATAA
7533677 ATAAATAAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
22 1 0.01
23 3 0.04
24 38 0.55
25 24 0.35
26 3 0.04
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.28
Consensus pattern (24 bp):
AAAAATTTAAAATAACTAATATAT
Found at i:7533788 original size:15 final size:15
Alignment explanation
Indices: 7533764--7533809 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
7533754 ATATAAATAG
*
7533764 AAATAAAAATATAAT
1 AAATAGAAATATAAT
7533779 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7533794 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
7533810 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:7533797 original size:23 final size:23
Alignment explanation
Indices: 7533731--7533797 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
7533721 TATAAGAAAA
*
7533731 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
7533751 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
7533774 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
7533797 A
1 A
7533798 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:7533829 original size:15 final size:14
Alignment explanation
Indices: 7533756--7533836 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
7533746 ATATTAGTAT
*
7533756 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
7533769 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
7533785 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
7533799 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
7533814 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
7533829 ATAAATAA
1 ATAAATAA
7533837 TAATGGTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.05
14 17 0.31
15 32 0.58
16 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:7534444 original size:5 final size:5
Alignment explanation
Indices: 7534391--7534437 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
7534381 CTAATTTAAT
7534391 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
7534438 AATAAAAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:7535075 original size:44 final size:44
Alignment explanation
Indices: 7535027--7535163 Score: 116
Period size: 44 Copynumber: 3.1 Consensus size: 44
7535017 ATCTGCTCCA
*
7535027 CTACTACTTATGGAGATAAGATCTGTCATTTTCAGCCTGTTTCC
1 CTACTACTTAAGGAGATAAGATCTGTCATTTTCAGCCTGTTTCC
* * * ** * ** *
7535071 CTACTACTTAGGGGGATAAG-GCTCACCGTTTTCAATCTG-CTCC
1 CTACTACTTAAGGAGATAAGATCT-GTCATTTTCAGCCTGTTTCC
* * * *
7535114 ACTACTGCTTAAGGAGATAAGATGTGTAATTTTCAGCCTATTTCC
1 -CTACTACTTAAGGAGATAAGATCTGTCATTTTCAGCCTGTTTCC
7535159 CTACT
1 CTACT
7535164 GTTTAGAGGA
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
43 5 0.07
44 58 0.87
45 4 0.06
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (44 bp):
CTACTACTTAAGGAGATAAGATCTGTCATTTTCAGCCTGTTTCC
Found at i:7535112 original size:88 final size:88
Alignment explanation
Indices: 7534933--7535271 Score: 394
Period size: 88 Copynumber: 3.8 Consensus size: 88
7534923 GTCTTCGATT
* * * *
7534933 TGCTCTACTACTACTTAGGGAGATAAAATCTGTAATTTTCAGCC-ATTTCCCTATTGCTTAGGGG
1 TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTCCCTACTACTTAGGGG
* * * *
7534997 GATAAGTCTCACTGTCTTCGATC
66 GATAAGGCTCACCGTTTTCAATC
* * *
7535020 TGCTCCACTACTACTTATGGAGATAAGATCTGTCATTTTCAGCCTGTTTCCCTACTACTTAGGGG
1 TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTCCCTACTACTTAGGGG
7535085 GATAAGGCTCACCGTTTTCAATC
66 GATAAGGCTCACCGTTTTCAATC
* * * ** *
7535108 TGCTCCACTACTGCTTAAGGAGATAAGATGTGTAATTTTCAGCCTATTTCCCTACTGTTTAGAGG
1 TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTCCCTACTACTTAGGGG
* * *
7535173 AATAAGGCTCACCATTTTCAACC
66 GATAAGGCTCACCGTTTTCAATC
* * * * * * *
7535196 TACTCCACTACTACTTAGGGAGATATGGTGGTCTGTCATTTTTAGCCT-GTTCCTTACTACTTAG
1 TGCTCCACTACTACTTAGGGAGATA---AGATCTGTAATTTTCAGCCTATTTCCCTACTACTTAG
7535260 GGGGATAAGGCT
63 GGGGATAAGGCT
7535272 AGTGGCTTAA
Statistics
Matches: 212, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
87 40 0.19
88 135 0.64
90 22 0.10
91 15 0.07
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (88 bp):
TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTCCCTACTACTTAGGGG
GATAAGGCTCACCGTTTTCAATC
Found at i:7535207 original size:44 final size:44
Alignment explanation
Indices: 7535071--7535220 Score: 112
Period size: 44 Copynumber: 3.4 Consensus size: 44
7535061 GCCTGTTTCC
* * * * * *
7535071 CTACTACTTAGGGGGATAAGGCTCACCGTTTTCAATCTGCTCCA
1 CTACTGCTTAAGGAGATAAGGCTCACCATTTTCAACCTACTCCA
* * *
7535115 CTACTGCTTAAGGAGATAAGATG-TGTA--ATTTTCAGCCTATTTCC-
1 CTACTGCTTAAGGAGATAAG--GCT-CACCATTTTCAACCTA-CTCCA
*
7535159 CTACTGTTTAGAGGA-ATAAGGCTCACCATTTTCAACCTACTCCA
1 CTACTGCTTA-AGGAGATAAGGCTCACCATTTTCAACCTACTCCA
* *
7535203 CTACTACTTAGGGAGATA
1 CTACTGCTTAAGGAGATA
7535221 TGGTGGTCTG
Statistics
Matches: 80, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
42 2 0.03
43 7 0.09
44 61 0.76
45 8 0.10
46 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
CTACTGCTTAAGGAGATAAGGCTCACCATTTTCAACCTACTCCA
Found at i:7542158 original size:21 final size:23
Alignment explanation
Indices: 7542111--7542164 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
7542101 CATTCAAGAT
**
7542111 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
7542134 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
7542155 AAAAT-ATATA
1 AAAATAATATA
7542165 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:7542211 original size:25 final size:24
Alignment explanation
Indices: 7542173--7542285 Score: 65
Period size: 24 Copynumber: 4.6 Consensus size: 24
7542163 TAATGTGTAA
*
7542173 AAAAAGTTTGAAAT-ACATAATATAT
1 AAAAA-TTTAAAATAAC-TAATATAT
* *
7542198 GAAAATATTAAAATAACTAATGTAT
1 AAAAAT-TTAAAATAACTAATATAT
*
7542223 AAAAATTTAAAATGAGCGT--TATAT
1 AAAAATTTAAAAT-AAC-TAATATAT
* *
7542247 AAAAAGTTAAAATAGA-TAATA-ACA
1 AAAAATTTAAAATA-ACTAATATA-T
*
7542271 AAAAATGTAAAATAA
1 AAAAATTTAAAATAA
7542286 ATAAATAAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
22 1 0.01
23 3 0.04
24 38 0.55
25 24 0.35
26 3 0.04
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.28
Consensus pattern (24 bp):
AAAAATTTAAAATAACTAATATAT
Found at i:7542397 original size:15 final size:15
Alignment explanation
Indices: 7542373--7542418 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
7542363 ATATAAATAG
*
7542373 AAATAAAAATATAAT
1 AAATAGAAATATAAT
7542388 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7542403 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
7542419 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:7542406 original size:23 final size:23
Alignment explanation
Indices: 7542340--7542406 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
7542330 TATAAGAAAA
*
7542340 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
7542360 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
7542383 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
7542406 A
1 A
7542407 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:7542438 original size:15 final size:14
Alignment explanation
Indices: 7542365--7542445 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
7542355 ATATTAGTAT
*
7542365 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
7542378 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
7542394 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
7542408 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
7542423 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
7542438 ATAAATAA
1 ATAAATAA
7542446 TAATGGTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.05
14 17 0.31
15 32 0.58
16 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:7546973 original size:9 final size:9
Alignment explanation
Indices: 7546959--7547000 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
7546949 TCTTATATTT
7546959 TTTTTTTAC
1 TTTTTTTAC
7546968 TTTTTTTAC
1 TTTTTTTAC
*
7546977 TTTTTTAAC
1 TTTTTTTAC
7546986 -TTTTTTAC
1 TTTTTTTAC
7546994 TTTTTTT
1 TTTTTTT
7547001 CTTATATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:7546982 original size:17 final size:18
Alignment explanation
Indices: 7546959--7547000 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
7546949 TCTTATATTT
7546959 TTTTTTTACTTTTTTTAC
1 TTTTTTTACTTTTTTTAC
*
7546977 TTTTTTAAC-TTTTTTAC
1 TTTTTTTACTTTTTTTAC
7546994 TTTTTTT
1 TTTTTTT
7547001 CTTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTACTTTTTTTAC
Found at i:7547085 original size:36 final size:36
Alignment explanation
Indices: 7547016--7547089 Score: 98
Period size: 36 Copynumber: 2.0 Consensus size: 36
7547006 ATTTTGCCTC
*
7547016 TTTCTTAGATTTTTTTCTTTTTTAAGTTTTATATTAT
1 TTTCTTAGATTTTTTTCTTATTTAAG-TTTATATTAT
7547053 TTTCTTA-ATTTATTTTACTTATTTAA-TTTATATTAT
1 TTTCTTAGATTT-TTTT-CTTATTTAAGTTTATATTAT
7547089 T
1 T
7547090 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 15 0.44
37 11 0.32
38 8 0.24
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (36 bp):
TTTCTTAGATTTTTTTCTTATTTAAGTTTATATTAT
Found at i:7547094 original size:18 final size:17
Alignment explanation
Indices: 7547043--7547090 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
7547033 TTTTTTAAGT
*
7547043 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
*
7547061 TTTATTTTACTTATTTAA
1 TTTATATTA-TTATTTAA
7547079 TTTATATTATTA
1 TTTATATTATTA
7547091 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:7547388 original size:22 final size:23
Alignment explanation
Indices: 7547355--7547399 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
7547345 TGTATATTTC
7547355 TAAAATTAATTTTTGAAA-ATTA
1 TAAAATTAATTTTTGAAATATTA
*
7547377 TAAATATT-ATTTTTTAAATATTA
1 TAAA-ATTAATTTTTGAAATATTA
7547400 ACCATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TAAAATTAATTTTTGAAATATTA
Found at i:7547390 original size:23 final size:22
Alignment explanation
Indices: 7547355--7547399 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
7547345 TGTATATTTC
7547355 TAAAATTAATTTTTGAAA-ATTA
1 TAAAATTAATTTTT-AAATATTA
*
7547377 TAAATATTATTTTTTAAATATTA
1 TAAA-ATTAATTTTTAAATATTA
7547400 ACCATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TAAAATTAATTTTTAAATATTA
Found at i:7547565 original size:85 final size:75
Alignment explanation
Indices: 7547496--7547635 Score: 262
Period size: 75 Copynumber: 1.8 Consensus size: 75
7547486 TAAAACATTT
7547496 AAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTAAAAAATGTTAAATATTTTTAAAAT
1 AAACATTTAAATTTTTAAAT-AAATTTGTATAAAAAATTT-AAAAATGTTAAATATTTTTAAAAT
7547561 TTTAATAATATA
64 TTTAATAATATA
7547573 AAACATTTAAATTTTTAAATAAATTTGTATAAAAAATTTAAAAATGTTAAATATTTTTAAAAT
1 AAACATTTAAATTTTTAAATAAATTTGTATAAAAAATTTAAAAATGTTAAATATTTTTAAAAT
7547636 AAATAAAAAT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
75 24 0.38
76 19 0.30
77 20 0.32
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (75 bp):
AAACATTTAAATTTTTAAATAAATTTGTATAAAAAATTTAAAAATGTTAAATATTTTTAAAATTT
TAATAATATA
Found at i:7547661 original size:76 final size:77
Alignment explanation
Indices: 7547474--7547651 Score: 256
Period size: 77 Copynumber: 2.3 Consensus size: 77
7547464 TTGTTTTTAT
*
7547474 TTTTTAATAAT-ATAAAACAT-TTAAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTA
1 TTTTTAA-AATAATAAAA-ATATAAAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTA
7547537 AAAAATGTTAAATA
64 AAAAATGTTAAATA
** *
7547551 TTTTTAAAATTTTAATAATATAAAACATTTAAATTTTTAAAT-AAATTTGTATAAAAAATTT-AA
1 TTTTTAAAATAATAAAAATATAAAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTAAA
7547614 AAATGTTAAATA
66 AAATGTTAAATA
7547626 TTTTTAAAATAAATAAAAATTATAAA
1 TTTTTAAAAT-AATAAAAA-TATAAA
7547652 TTTAAAAATT
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
75 24 0.26
76 29 0.32
77 38 0.42
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (77 bp):
TTTTTAAAATAATAAAAATATAAAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTAAA
AAATGTTAAATA
Found at i:7547673 original size:76 final size:77
Alignment explanation
Indices: 7547474--7547674 Score: 225
Period size: 75 Copynumber: 2.6 Consensus size: 77
7547464 TTGTTTTTAT
* * *
7547474 TTTTTAATAAT-ATAAAACAT-TTAAACATTTAAATTTTTAAATAAAATTTGTATAAAAAATTTA
1 TTTTTAA-AATAATAAAA-ATATAAAACATTTAAAATTCTAAATAAAATTTGTATAAAAAATTTA
7547537 AAAAATGTTAAATA
64 AAAAATGTTAAATA
** * * *
7547551 TTTTTAAAATTTTAATAATATAAAACATTTAAATTTTTAAAT-AAATTTGTATAAAAAATTT-AA
1 TTTTTAAAATAATAAAAATATAAAACATTTAAAATTCTAAATAAAATTTGTATAAAAAATTTAAA
7547614 AAATGTTAAATA
66 AAATGTTAAATA
* **
7547626 TTTTTAAAATAAATAAAAAT-TATAA-ATTTAAAAATTCTATGTAAAATTT
1 TTTTTAAAAT-AATAAAAATATAAAACATTT-AAAATTCTAAATAAAATTT
7547675 AAAAATATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
74 4 0.04
75 36 0.33
76 36 0.33
77 32 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (77 bp):
TTTTTAAAATAATAAAAATATAAAACATTTAAAATTCTAAATAAAATTTGTATAAAAAATTTAAA
AAATGTTAAATA
Found at i:7547686 original size:10 final size:9
Alignment explanation
Indices: 7547667--7547774 Score: 67
Period size: 10 Copynumber: 11.6 Consensus size: 9
7547657 AAATTCTATG
7547667 TAAAAT-TT
1 TAAAATATT
*
7547675 AAAAATATT
1 TAAAATATT
7547684 TAAAATCATT
1 TAAAAT-ATT
7547694 TAAAATATT
1 TAAAATATT
*
7547703 AAAAAATATT
1 -TAAAATATT
*
7547713 TTAAATCATT
1 TAAAAT-ATT
*
7547723 TTAAATCATT
1 TAAAAT-ATT
* *
7547733 TTAAATGTTT
1 TAAAAT-ATT
*
7547743 TATAATATT
1 TAAAATATT
*
7547752 AAAAATATAT
1 TAAAATAT-T
*
7547762 T-TAATATT
1 TAAAATATT
7547770 TAAAA
1 TAAAA
7547775 AATAATTTGA
Statistics
Matches: 79, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
8 7 0.09
9 29 0.37
10 43 0.54
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (9 bp):
TAAAATATT
Found at i:7547738 original size:29 final size:29
Alignment explanation
Indices: 7547667--7547728 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
7547657 AAATTCTATG
*
7547667 TAAAAT-TT-AAAAATATTTAAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
7547694 TAAAATATTAAAAAATATTTTAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
*
7547723 TTAAAT
1 TAAAAT
7547729 CATTTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 6 0.19
28 2 0.06
29 23 0.74
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAAATATTAAAAAATATTTTAAATCATT
Found at i:7547791 original size:31 final size:34
Alignment explanation
Indices: 7547744--7547832 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
7547734 TAAATGTTTT
7547744 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
7547776 ATAAT-TTGAAAATATATTTTTAATATTTATAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTATAAAA
*
7547810 A-ATATATTATAAAACAT-TTTTAA
1 ATA-ATATTA-AAAATATATTTTAA
7547833 AAAATACATT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
31 10 0.21
32 5 0.10
33 12 0.25
34 13 0.27
35 2 0.04
36 6 0.12
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:7547823 original size:13 final size:13
Alignment explanation
Indices: 7547797--7547838 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
7547787 ATATATTTTT
7547797 AATATTTATAAAA
1 AATATTTATAAAA
7547810 AATATATTATAAAA
1 AATAT-TTATAAAA
*
7547824 CAT-TTT-TAAAA
1 AATATTTATAAAA
7547835 AATA
1 AATA
7547839 CATTTCGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 6 0.24
14 10 0.40
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTTATAAAA
Found at i:7548143 original size:96 final size:95
Alignment explanation
Indices: 7547980--7548171 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 95
7547970 TTTGGCTCCA
7547980 TCAGGAAATGGCAAAATTGCTACGGGGCCCCTATACTTTAAAAAATCACAGTATTTTGGTGGAGC
1 TCAGGAAATGGCAAAATTGCTACGGGGCCCCTATACTTTAAAAAATCACAGTATTTTGGTGGAGC
7548045 CATTCTTTATGGCTCCACCTCTTGGTTCTC
66 CATTCTTTATGGCTCCACCTCTTGGTTCTC
7548075 TCAGGAAATGGCAAAATTGCTACGGGGCCCCCTATACTTTAAAAAATCACAGTATTTTGGTGGAG
1 TCAGGAAATGGCAAAATTGCTACGGGG-CCCCTATACTTTAAAAAATCACAGTATTTTGGTGGAG
7548140 CCATTCTTTATGGCTCCACCTCTTGGTTCTC
65 CCATTCTTTATGGCTCCACCTCTTGGTTCTC
7548171 T
1 T
7548172 TCTATATATA
Statistics
Matches: 96, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 27 0.28
96 69 0.72
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (95 bp):
TCAGGAAATGGCAAAATTGCTACGGGGCCCCTATACTTTAAAAAATCACAGTATTTTGGTGGAGC
CATTCTTTATGGCTCCACCTCTTGGTTCTC
Found at i:7550341 original size:26 final size:24
Alignment explanation
Indices: 7550311--7550360 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
7550301 AAATAAAAAA
*
7550311 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
7550337 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
7550361 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:7550380 original size:21 final size:21
Alignment explanation
Indices: 7550331--7550389 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7550321 ATAATAAATC
*
7550331 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
7550351 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
7550373 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
7550390 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Done.