Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 22 of 182
Found at i:7550466 original size:15 final size:16
Alignment explanation
Indices: 7550436--7550468 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7550426 AAATGGTTAT
7550436 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
7550453 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
7550468 A
1 A
7550469 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:7552011 original size:30 final size:30
Alignment explanation
Indices: 7551975--7552077 Score: 161
Period size: 30 Copynumber: 3.4 Consensus size: 30
7551965 CCTATATCCA
*
7551975 GGTGATATGAACTCAAACCACCCATGTCCG
1 GGTGATATGAACTCGAACCACCCATGTCCG
7552005 GGTGATATGAACTCGAACCACCCATGTCCG
1 GGTGATATGAACTCGAACCACCCATGTCCG
* * *
7552035 GATGATATGAACTCGAACCATCTATGTCCG
1 GGTGATATGAACTCGAACCACCCATGTCCG
*
7552065 GGTTATATGAACT
1 GGTGATATGAACT
7552078 GCTCTAGGAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (30 bp):
GGTGATATGAACTCGAACCACCCATGTCCG
Found at i:7555114 original size:18 final size:18
Alignment explanation
Indices: 7555072--7555118 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
7555062 TAAAAAAAAA
*
7555072 ATATTT-AATATATATTT
1 ATATTTAAATTTATATTT
*
7555089 -T-TTAAAATTTATATTT
1 ATATTTAAATTTATATTT
7555105 ATATTTAAATTTAT
1 ATATTTAAATTTAT
7555119 TAATAGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 2 0.08
16 11 0.46
17 1 0.04
18 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATATTTAAATTTATATTT
Found at i:7555254 original size:22 final size:24
Alignment explanation
Indices: 7555226--7555273 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7555216 AAAAGAATTT
7555226 AAAAATAATATT-T-AAA-ATTTTA
1 AAAAAT-ATATTATAAAACATTTTA
7555248 AAAAATATATTATAAAACATTTTA
1 AAAAATATATTATAAAACATTTTA
7555272 AA
1 AA
7555274 TATACATTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 5 0.22
22 7 0.30
23 3 0.13
24 8 0.35
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAAATATATTATAAAACATTTTA
Found at i:7555290 original size:21 final size:23
Alignment explanation
Indices: 7555239--7555296 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
7555229 AATAATATTT
*
7555239 AAAATTTTAAAAAATATATTATA
1 AAAATTTTAAAAAATACATTATA
* *
7555262 AAACATTTT-AAATATACATTACA
1 AAA-ATTTTAAAAAATACATTATA
*
7555285 AAATTTTTAAAA
1 AAAATTTTAAAA
7555297 TTAATAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 4 0.14
23 20 0.69
24 5 0.17
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAATTTTAAAAAATACATTATA
Found at i:7555422 original size:27 final size:28
Alignment explanation
Indices: 7555392--7555455 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
7555382 TTTAAAAAAA
* * *
7555392 TATTTAAAATATTATGAT-TTCTTATAT-
1 TATTTAAAAAATTATAATCTT-TTAAATG
7555419 TA-TTAAAAAATTATAATCTTTTAAATG
1 TATTTAAAAAATTATAATCTTTTAAATG
7555446 TATTTAAAAA
1 TATTTAAAAA
7555456 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 18 0.58
27 6 0.19
28 7 0.23
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (28 bp):
TATTTAAAAAATTATAATCTTTTAAATG
Found at i:7555457 original size:27 final size:26
Alignment explanation
Indices: 7555392--7555457 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
7555382 TTTAAAAAAA
* *
7555392 TATTTAAAATATTATGATTTCTTATAT
1 TATTTAAAA-ATTATAATTTCTTAAAT
*
7555419 TATTAAAAAATTATAATCTT-TTAAAT
1 TATTTAAAAATTATAAT-TTCTTAAAT
7555445 GTATTTAAAAATT
1 -TATTTAAAAATT
7555458 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 12 0.36
27 21 0.64
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (26 bp):
TATTTAAAAATTATAATTTCTTAAAT
Found at i:7556056 original size:18 final size:18
Alignment explanation
Indices: 7556006--7556057 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
7555996 AAATTTTTTA
*
7556006 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
** *
7556024 AAATAAGCAAAATAAATT
1 AAATAAATAATATAAATT
7556042 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
7556058 ACTTAAAAAG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:7556113 original size:9 final size:9
Alignment explanation
Indices: 7556099--7556131 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
7556089 AAATATAAGA
7556099 AAAAAAAGT
1 AAAAAAAGT
7556108 AAAAAAA-T
1 AAAAAAAGT
7556116 AAAAAAAGT
1 AAAAAAAGT
7556125 AAAAAAA
1 AAAAAAA
7556132 ATATAAGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:7556134 original size:18 final size:17
Alignment explanation
Indices: 7556099--7556131 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7556089 AAATATAAGA
7556099 AAAAAAAGTAAAAAAAT
1 AAAAAAAGTAAAAAAAT
7556116 AAAAAAAGTAAAAAAA
1 AAAAAAAGTAAAAAAA
7556132 ATATAAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (17 bp):
AAAAAAAGTAAAAAAAT
Found at i:7556341 original size:24 final size:24
Alignment explanation
Indices: 7556304--7556376 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
7556294 GGTAAGACAT
7556304 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
* *
7556328 TTTCCACTGTTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
7556352 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
7556376 T
1 T
7556377 ATCGATTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.12, C:0.47, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:7557190 original size:8 final size:8
Alignment explanation
Indices: 7557177--7557201 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7557167 AATGCCGTTC
7557177 CTGTTGTT
1 CTGTTGTT
7557185 CTGTTGTT
1 CTGTTGTT
7557193 CTGTTGTT
1 CTGTTGTT
7557201 C
1 C
7557202 CTGGTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.24, T:0.60
Consensus pattern (8 bp):
CTGTTGTT
Found at i:7571519 original size:55 final size:55
Alignment explanation
Indices: 7571456--7571586 Score: 255
Period size: 55 Copynumber: 2.4 Consensus size: 55
7571446 AGATGAAGGT
7571456 AGAG-CATAGCATCAAGTCCATTTGTAGCTTCCAAAATTAAGAAGGTGCAAGCTA
1 AGAGACATAGCATCAAGTCCATTTGTAGCTTCCAAAATTAAGAAGGTGCAAGCTA
7571510 AGAGACATAGCATCAAGTCCATTTGTAGCTTCCAAAATTAAGAAGGTGCAAGCTA
1 AGAGACATAGCATCAAGTCCATTTGTAGCTTCCAAAATTAAGAAGGTGCAAGCTA
7571565 AGAGACATAGCATCAAGTCCAT
1 AGAGACATAGCATCAAGTCCAT
7571587 AATTTACAAC
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
54 4 0.05
55 72 0.95
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (55 bp):
AGAGACATAGCATCAAGTCCATTTGTAGCTTCCAAAATTAAGAAGGTGCAAGCTA
Found at i:7582449 original size:21 final size:21
Alignment explanation
Indices: 7582392--7582443 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
7582382 AACTATATTA
7582392 TAAATATTTA-AATATA-ACTAT
1 TAAATATTTATAAT-TAGA-TAT
7582413 TAAATATTTATAATTAGATAT
1 TAAATATTTATAATTAGATAT
7582434 TAACATATTT
1 TAA-ATATTT
7582444 GTATTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAATATTTATAATTAGATAT
Found at i:7583360 original size:30 final size:30
Alignment explanation
Indices: 7583316--7583378 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
7583306 ACTTAACAAG
* *
7583316 CAAATGCCTCTAAAATAATAGCAAAATTAA
1 CAAATGCCTCTAAAAAAATAACAAAATTAA
* *
7583346 CAAATGTCTTTAAAAAAATAACAAAATTAA
1 CAAATGCCTCTAAAAAAATAACAAAATTAA
7583376 CAA
1 CAA
7583379 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAAAAATAACAAAATTAA
Found at i:7584140 original size:251 final size:251
Alignment explanation
Indices: 7583697--7584198 Score: 959
Period size: 251 Copynumber: 2.0 Consensus size: 251
7583687 TTATGTTTAT
*
7583697 GAGAAGTTATATTATACACAGTTTCAAGTTTTATTTTCATAACCCTCCGTTGACGGGTATTAAAA
1 GAGAAGTTATATTATACACAGTTTCAAGTTTTATTTTCATAACCCTCCATTGACGGGTATTAAAA
7583762 AACTAGTTGATCGCTGTCTCTCTCTTCTAGTTATTCACATGCTGAATATTCAAGTTTGACCCAAC
66 AACTAGTTGATCGCTGTCTCTCTCTTCTAGTTATTCACATGCTGAATATTCAAGTTTGACCCAAC
*
7583827 CAAATCCTACTATCCGTATCTTCTCATTCACCTTACAACCATTTTTAATATAAAAAGTTTTTCTG
131 CAAATCCTACTATCCGTATCTTCTCATTCACCTTACAACCATTTTTAATATAAAAAGTTTTTCCG
* *
7583892 AAAACATTCTGTAACGGCCCAAATTTCAGTGATATCGGAATAGTGATATTAGATCA
196 AAAACATTCTGTAACGGCCCAAATTTCAGTGATATCAGAATAGTGATATGAGATCA
7583948 GAGAAGTTATATTATACACAGTTTCAAGTTTTATTTTCATAACCCTCCATTGACGGGTATTAAAA
1 GAGAAGTTATATTATACACAGTTTCAAGTTTTATTTTCATAACCCTCCATTGACGGGTATTAAAA
7584013 AACTAGTTGATCGCTGTCTCTCTCTTCTAGTTATTCACATGCTGAATATTCAAGTTTGACCCAAC
66 AACTAGTTGATCGCTGTCTCTCTCTTCTAGTTATTCACATGCTGAATATTCAAGTTTGACCCAAC
*
7584078 CAAATCCTACTATTCGTATCTTCTCATTCACCTTACAACCATTTTTAATATAAAAAGTTTTTCCG
131 CAAATCCTACTATCCGTATCTTCTCATTCACCTTACAACCATTTTTAATATAAAAAGTTTTTCCG
7584143 AAAACATTCTGTAACGGCCCAAATTTCAGTGATATCAGAATAGTGATATGAGATCA
196 AAAACATTCTGTAACGGCCCAAATTTCAGTGATATCAGAATAGTGATATGAGATCA
7584199 CTAAATCCGA
Statistics
Matches: 246, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
251 246 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (251 bp):
GAGAAGTTATATTATACACAGTTTCAAGTTTTATTTTCATAACCCTCCATTGACGGGTATTAAAA
AACTAGTTGATCGCTGTCTCTCTCTTCTAGTTATTCACATGCTGAATATTCAAGTTTGACCCAAC
CAAATCCTACTATCCGTATCTTCTCATTCACCTTACAACCATTTTTAATATAAAAAGTTTTTCCG
AAAACATTCTGTAACGGCCCAAATTTCAGTGATATCAGAATAGTGATATGAGATCA
Found at i:7584742 original size:9 final size:9
Alignment explanation
Indices: 7584728--7584767 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
7584718 GGCCTCTCTA
7584728 TTTTTTCTT
1 TTTTTTCTT
7584737 TTTTTTC-T
1 TTTTTTCTT
*
7584745 CTTTTTCTT
1 TTTTTTCTT
7584754 TTTTTTCCTT
1 TTTTTT-CTT
7584764 TTTT
1 TTTT
7584768 GAAATAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 7 0.26
9 13 0.48
10 7 0.26
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:7584751 original size:17 final size:16
Alignment explanation
Indices: 7584729--7584766 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
7584719 GCCTCTCTAT
7584729 TTTTTCTTTTTTTTCTC
1 TTTTTCTTTTTTTTC-C
7584746 TTTTTCTTTTTTTTCC
1 TTTTTCTTTTTTTTCC
7584762 TTTTT
1 TTTTT
7584767 TGAAATAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTTTCC
Found at i:7588164 original size:15 final size:15
Alignment explanation
Indices: 7588139--7588196 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
7588129 TCATATATAT
7588139 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
7588155 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
7588170 AATAATTTCAATCAA
1 TATAAATTCAATCAA
7588185 TATAAATTCAAT
1 TATAAATTCAAT
7588197 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:7596388 original size:52 final size:52
Alignment explanation
Indices: 7596279--7596438 Score: 164
Period size: 52 Copynumber: 3.1 Consensus size: 52
7596269 TGACGGAAAA
* * ** * *
7596279 GATGTGATATATGATTCCGTATAAGACCATAGCCGGGCTATGGCATCAGTAC
1 GATGTGATATGTGATTCCATATAAGACCATAGTTGGGCTATGGCATCGGTAT
* *
7596331 AATGTGAT-TGGTG-TTCCCATATAAGACCATAGTTGGGCTATGGCATCGGTGT
1 GATGTGATAT-GTGATT-CCATATAAGACCATAGTTGGGCTATGGCATCGGTAT
** *
7596383 GATGTGATAATGTGATTCTGTATAAGACCATA-TCTGGGATATGGCATCGGTAT
1 GATGTGAT-ATGTGATTCCATATAAGACCATAGT-TGGGCTATGGCATCGGTAT
7596436 GAT
1 GAT
7596439 ATGTGATCCG
Statistics
Matches: 89, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
51 3 0.03
52 47 0.53
53 36 0.40
54 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (52 bp):
GATGTGATATGTGATTCCATATAAGACCATAGTTGGGCTATGGCATCGGTAT
Found at i:7596457 original size:46 final size:52
Alignment explanation
Indices: 7596282--7596459 Score: 126
Period size: 52 Copynumber: 3.5 Consensus size: 52
7596272 CGGAAAAGAT
* ** * * ***
7596282 GTGAT-ATATGATTCCGTATAAGACCATAGCCGGGCTATGGCATCAGTACAA
1 GTGATAATGTGATTCCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGA
* *
7596333 TGTGAT--TGGTG-TTCCCATATAAGACCATAGTTGGGCTATGGCATCGGTGTGA
1 -GTGATAAT-GTGATT-CCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGA
*
7596385 TGTGATAATGTGATTCTGTATAAGACCATA-TCTGGGATATGGCATC-G-GT-A
1 -GTGATAATGTGATTCCGTATAAGACCATAGT-TGGGATATGGCATCGGTGTGA
*
7596435 -TGAT-ATGTGA-TCCGTGTAAGACCAT
1 GTGATAATGTGATTCCGTATAAGACCAT
7596460 GACAGGGCTA
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
46 13 0.12
47 6 0.06
48 4 0.04
50 1 0.01
51 5 0.05
52 46 0.43
53 29 0.27
54 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (52 bp):
GTGATAATGTGATTCCGTATAAGACCATAGTTGGGATATGGCATCGGTGTGA
Found at i:7596472 original size:46 final size:48
Alignment explanation
Indices: 7596387--7596479 Score: 111
Period size: 46 Copynumber: 2.0 Consensus size: 48
7596377 CGGTGTGATG
* *
7596387 TGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGGTA
1 TGATAATGTGATTCCGTATAAGACCATATCAGGGATATGGCATCGGTA
* * *
7596435 TGAT-ATGTGA-TCCGTGTAAGACCATGA-CAGGGCTATGGCTTCGGT
1 TGATAATGTGATTCCGTATAAGACCAT-ATCAGGGATATGGCATCGGT
7596480 GTGTGATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
46 28 0.72
47 7 0.18
48 4 0.10
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (48 bp):
TGATAATGTGATTCCGTATAAGACCATATCAGGGATATGGCATCGGTA
Found at i:7601559 original size:5 final size:5
Alignment explanation
Indices: 7601536--7601574 Score: 60
Period size: 5 Copynumber: 7.4 Consensus size: 5
7601526 AGTATTCCAA
7601536 TTTAT TATTAT TATTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT T-TTAT T-TTAT TTTAT TTTAT TTTAT TTTAT TT
7601575 ATAAATTTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 22 0.67
6 11 0.33
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:7603333 original size:30 final size:30
Alignment explanation
Indices: 7603279--7603367 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
7603269 TGAATATACG
* * *
7603279 TATTATATATTTTATAATTATTCATATTGT
1 TATTATATATTATATATTTTTTCATATTGT
* * *
7603309 TATTATCTATTATATATTTTTTCATGTATAT
1 TATTATATATTATATATTTTTTCATAT-TGT
*
7603340 TATTATGTA-TAT-TATTATTTTCATATTG
1 TATTATATATTATATATT-TTTTCATATTG
7603368 AATTGATAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 5 0.10
30 33 0.69
31 10 0.21
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (30 bp):
TATTATATATTATATATTTTTTCATATTGT
Found at i:7603349 original size:12 final size:12
Alignment explanation
Indices: 7603332--7603357 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7603322 ATATTTTTTC
7603332 ATGTATATTATT
1 ATGTATATTATT
7603344 ATGTATATTATT
1 ATGTATATTATT
7603356 AT
1 AT
7603358 TTTCATATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (12 bp):
ATGTATATTATT
Found at i:7615447 original size:87 final size:87
Alignment explanation
Indices: 7615340--7615526 Score: 347
Period size: 87 Copynumber: 2.1 Consensus size: 87
7615330 AAGAAGATCC
*
7615340 AAGATGATTTGGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGTTGATTTGGCTTACAC
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTACAC
7615405 GTGTTTACGATGAAGCAAATCT
66 GTGTTTACGATGAAGCAAATCT
*
7615427 AAGATGATTTGGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCAC
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTACAC
*
7615492 GTGTTTACGTTGAAGCAAATCT
66 GTGTTTACGATGAAGCAAATCT
7615514 AAGATGATTTGGC
1 AAGATGATTTGGC
7615527 GTCTCTATAT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 97 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (87 bp):
AAGATGATTTGGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTACAC
GTGTTTACGATGAAGCAAATCT
Found at i:7617482 original size:30 final size:30
Alignment explanation
Indices: 7617428--7617516 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
7617418 TGAATATACG
* * *
7617428 TATTATATATTTTATAATTATTCATATTGT
1 TATTATATATTATATATTTTTTCATATTGT
* * *
7617458 TATTATCTATTATATATTTTTTCATGTATAT
1 TATTATATATTATATATTTTTTCATAT-TGT
*
7617489 TATTATGTA-TAT-TATTATTTTCATATTG
1 TATTATATATTATATATT-TTTTCATATTG
7617517 AATTGATAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 5 0.10
30 33 0.69
31 10 0.21
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (30 bp):
TATTATATATTATATATTTTTTCATATTGT
Found at i:7617498 original size:12 final size:12
Alignment explanation
Indices: 7617481--7617506 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7617471 ATATTTTTTC
7617481 ATGTATATTATT
1 ATGTATATTATT
7617493 ATGTATATTATT
1 ATGTATATTATT
7617505 AT
1 AT
7617507 TTTCATATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (12 bp):
ATGTATATTATT
Found at i:7619394 original size:45 final size:45
Alignment explanation
Indices: 7619344--7619450 Score: 151
Period size: 45 Copynumber: 2.4 Consensus size: 45
7619334 GTAGCAGTAG
** * *
7619344 CAGTAACAATAACAGTATTCAACACACAAAGTGTTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
* * *
7619389 CAGTAACGGTAACAATATTCGACACACAAAGTGTCGGATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
7619434 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
7619451 ACAGTAGTCG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
Found at i:7619445 original size:12 final size:12
Alignment explanation
Indices: 7619428--7619452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7619418 AGTGTCGGAT
7619428 CGGTAACAGTAA
1 CGGTAACAGTAA
7619440 CGGTAACAGTAA
1 CGGTAACAGTAA
7619452 C
1 C
7619453 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:7620523 original size:18 final size:18
Alignment explanation
Indices: 7620502--7620536 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7620492 AATCAGTAAT
* *
7620502 CAGTAACGGTAGCAGTAG
1 CAGTAACAGTAACAGTAG
7620520 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
7620537 TTCAACACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (18 bp):
CAGTAACAGTAACAGTAG
Found at i:7620570 original size:45 final size:45
Alignment explanation
Indices: 7620520--7620626 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
7620510 GTAGCAGTAG
* *
7620520 CAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAATCGGTAA
* *
7620565 CAGTAACGGTAACAATATTCGACACACAAAGTGTCGAATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
7620610 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
7620627 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
Found at i:7620621 original size:12 final size:12
Alignment explanation
Indices: 7620604--7620628 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7620594 AGTGTCGAAT
7620604 CGGTAACAGTAA
1 CGGTAACAGTAA
7620616 CGGTAACAGTAA
1 CGGTAACAGTAA
7620628 C
1 C
7620629 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:7620892 original size:40 final size:40
Alignment explanation
Indices: 7620839--7620919 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
7620829 CTTCATTAGA
* * *
7620839 AATTTTACAGTTCAATGCAATATACATAACATTATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
* * **
7620879 AATTTCACTGTTCAATTCGGTATACAAAACAATATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
7620919 A
1 A
7620920 TCCCATAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
Found at i:7627614 original size:15 final size:14
Alignment explanation
Indices: 7627583--7627627 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
7627573 TTTGTTTCTT
7627583 TTAT-ATATAATAA
1 TTATAATATAATAA
7627596 -TATAATATAATATA
1 TTATAATATAATA-A
7627610 TTATAATATACATAA
1 TTATAATATA-ATAA
7627625 TTA
1 TTA
7627628 GTAAACAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 8 0.29
14 1 0.04
15 13 0.46
16 3 0.11
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
TTATAATATAATAA
Found at i:7633932 original size:26 final size:26
Alignment explanation
Indices: 7633901--7634008 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
7633891 TGAAATGCCC
*
7633901 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
7633927 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7633953 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
7633979 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7634005 ATCA
1 ATCA
7634009 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7636302 original size:43 final size:43
Alignment explanation
Indices: 7636238--7636474 Score: 255
Period size: 43 Copynumber: 5.5 Consensus size: 43
7636228 CGTTTATGAA
* * * *
7636238 AAAAATACCGCTAAAGGTCATGATCTTTAGCGGCGCTTTTCCC
1 AAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACC
* *
7636281 AAAAATGCTGCTAAAGATCATGACCTTTAGCGGTGCTTTT-CC
1 AAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACC
*
7636323 AAAAATGCCGTTAAAGATCATGACCTTTAGCGGCGCTTTTACC
1 AAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACC
* * * * * *
7636366 ACAAACGCCACTAAAGAACATGACCTTTAGCGACGCTTTTATC
1 AAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACC
* * *
7636409 ACAAACGCCGCTAAA-ATACATGACTTTTAGCGGCGCTTTT-CTC
1 AAAAATGCCGCTAAAGAT-CATGACCTTTAGCGGCGCTTTTAC-C
* * * *
7636452 ACAAACGCCACTAAAAATCATGA
1 AAAAATGCCGCTAAAGATCATGA
7636475 TTTTTTTAAA
Statistics
Matches: 169, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
42 40 0.24
43 127 0.75
44 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
AAAAATGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACC
Found at i:7636456 original size:86 final size:84
Alignment explanation
Indices: 7636245--7636474 Score: 266
Period size: 85 Copynumber: 2.7 Consensus size: 84
7636235 GAAAAAAATA
* * * * ** *
7636245 CCGCTAAAGGTCATGATCTTTAGCGGCGCTTTTCCCAAAAATGCTGCTAAAGATCATGACCTTTA
1 CCGCTAAAGATCATGACCTTTAGCGGCGCTTTT-CCACAAACGCCACTAAAGAACATGACCTTTA
** *
7636310 GCGGTGCTTTTCCAAAAATG
65 GCGACGCTTTTCCAAAAACG
*
7636330 CCGTTAAAGATCATGACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGACCTTTA
1 CCGCTAAAGATCATGACCTTTAGCGGCGCTTTT-CCACAAACGCCACTAAAGAACATGACCTTTA
* *
7636395 GCGACGCTTTTATCACAAACG
65 GCGACGCTTTT-CCAAAAACG
*
7636416 CCGCTAAA-ATACATGACTTTTAGCGGCGCTTTTCTCACAAACGCCACTAAA-AATCATGA
1 CCGCTAAAGAT-CATGACCTTTAGCGGCGCTTTTC-CACAAACGCCACTAAAGAA-CATGA
7636475 TTTTTTTAAA
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
85 70 0.56
86 55 0.44
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (84 bp):
CCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCACAAACGCCACTAAAGAACATGACCTTTAG
CGACGCTTTTCCAAAAACG
Found at i:7636507 original size:19 final size:22
Alignment explanation
Indices: 7636492--7636539 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7636482 AAAAAATTAT
7636492 TTTATTT-TA-ATTAAATAATA
1 TTTATTTCTATATTAAATAATA
*
7636512 TTTATTTCTATATTAAATATTA
1 TTTATTTCTATATTAAATAATA
7636534 TATTAT
1 T-TTAT
7636540 GTTTAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 2 0.08
22 11 0.46
23 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTATTTCTATATTAAATAATA
Found at i:7638009 original size:15 final size:16
Alignment explanation
Indices: 7637983--7638013 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7637973 TCTCTCTTAC
7637983 TTTTAGATCATATATA
1 TTTTAGATCATATATA
7637999 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
7638014 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:7640526 original size:3 final size:3
Alignment explanation
Indices: 7640518--7640552 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7640508 ACAAAAAGAA
7640518 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7640553 AGCTAAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7641229 original size:72 final size:72
Alignment explanation
Indices: 7641106--7641239 Score: 198
Period size: 72 Copynumber: 1.9 Consensus size: 72
7641096 TTCGGGTATA
* * * *
7641106 AAATAGAAGAATAGGTTGAGAAAGGCTGAGAAAGAAAAGGGAATTGGGAAAGAAAAGGGAATCGA
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATCGAGAAAGAAAAGGGAATCGA
7641171 GAGAGAG
66 GAGAGAG
* *
7641178 AAATAGAAGTACAGGCTGAGAATGGCTGAGAAAG-AAAGTGGAATCGAGAAAGAAAAGGGAAT
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAG-GGAATCGAGAAAGAAAAGGGAAT
7641240 TGGGGGAAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 4 0.07
72 51 0.93
ACGTcount: A:0.49, C:0.04, G:0.34, T:0.12
Consensus pattern (72 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATCGAGAAAGAAAAGGGAATCGA
GAGAGAG
Found at i:7641812 original size:7 final size:7
Alignment explanation
Indices: 7641800--7641893 Score: 50
Period size: 7 Copynumber: 13.3 Consensus size: 7
7641790 TAACTCCTAC
7641800 CCCTAAA
1 CCCTAAA
7641807 CCCTAAA
1 CCCTAAA
* *
7641814 TCATACAA
1 CCCTA-AA
*
7641822 -CATAAA
1 CCCTAAA
7641828 CCCTAAA
1 CCCTAAA
7641835 CCC-ATAA
1 CCCTA-AA
*
7641842 CCCTTAA
1 CCCTAAA
*
7641849 CCCTTAA
1 CCCTAAA
7641856 CACCTAAA
1 C-CCTAAA
**
7641864 CGTTAAA
1 CCCTAAA
*
7641871 TCCT-AA
1 CCCTAAA
*
7641877 CCCTTAA
1 CCCTAAA
7641884 CCCATAAA
1 CCC-TAAA
7641892 CC
1 CC
7641894 GTAATTCCAA
Statistics
Matches: 68, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
6 8 0.12
7 47 0.69
8 13 0.19
ACGTcount: A:0.41, C:0.37, G:0.01, T:0.20
Consensus pattern (7 bp):
CCCTAAA
Found at i:7641906 original size:28 final size:28
Alignment explanation
Indices: 7641847--7641918 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
7641837 CATAACCCTT
*
7641847 AACCCTTAACACC-TAAACGTTAAATCCT
1 AACCCTTAAC-CCATAAACGTTAAATCCA
*
7641875 AACCCTTAACCCATAAACCG-TAATTCCA
1 AACCCTTAACCCATAAA-CGTTAAATCCA
* *
7641903 AACCCATAATCCATAA
1 AACCCTTAACCCATAA
7641919 TACATAAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 2 0.05
28 34 0.89
29 2 0.05
ACGTcount: A:0.42, C:0.33, G:0.03, T:0.22
Consensus pattern (28 bp):
AACCCTTAACCCATAAACGTTAAATCCA
Found at i:7641962 original size:14 final size:14
Alignment explanation
Indices: 7641943--7641996 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
7641933 AATAGTAACT
*
7641943 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
*
7641957 CCTAAACCATATAC
1 CCTAAACCATAAAC
* *
7641971 CCTAAGCCATAAAT
1 CCTAAACCATAAAC
*
7641985 CCTAAACTATAA
1 CCTAAACCATAA
7641997 TGATAATTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.22
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:7642493 original size:40 final size:40
Alignment explanation
Indices: 7642434--7642598 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 40
7642424 TTTTATGGCA
* * * *
7642434 TTTTTTAAAAAGCGCCGCTAATGGTCGACCTATAGCAGCG
1 TTTTTCAAAAAGCGACGCTAATGCTCGACCTATAGCGGCG
* *
7642474 TTTTTCAAAAAGCGACGCTAATGGTCGACCTATAGCGGCC
1 TTTTTCAAAAAGCGACGCTAATGCTCGACCTATAGCGGCG
* * * *
7642514 TTTTTGAAAAAGC-ACCGTTAATGCTCGATCTATAGCGACG
1 TTTTTCAAAAAGCGA-CGCTAATGCTCGACCTATAGCGGCG
* *
7642554 TTTTTCAAAAAGTGCCGCTAATGCTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGACGCTAATGCTCGACCTATAGCGGCG
7642594 TTTTT
1 TTTTT
7642599 TATCCAAACG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
TTTTTCAAAAAGCGACGCTAATGCTCGACCTATAGCGGCG
Found at i:7642573 original size:80 final size:80
Alignment explanation
Indices: 7642434--7642598 Score: 233
Period size: 80 Copynumber: 2.1 Consensus size: 80
7642424 TTTTATGGCA
* * * *
7642434 TTTTTTAAAAAGCGCCGCTAATGGTCGACCTATAGCAGCGTTTTTCAAAAAGCGACGCTAATGGT
1 TTTTTGAAAAAGCACCGCTAATGCTCGACCTATAGCAGCGTTTTTCAAAAAGCGACGCTAATGCT
7642499 CGACCTATAGCGGCC
66 CGACCTATAGCGGCC
* * * *
7642514 TTTTTGAAAAAGCACCGTTAATGCTCGATCTATAGC-GACGTTTTTCAAAAAGTGCCGCTAATGC
1 TTTTTGAAAAAGCACCGCTAATGCTCGACCTATAGCAG-CGTTTTTCAAAAAGCGACGCTAATGC
*
7642578 TCGACCTATAGCGGCG
65 TCGACCTATAGCGGCC
7642594 TTTTT
1 TTTTT
7642599 TATCCAAACG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (80 bp):
TTTTTGAAAAAGCACCGCTAATGCTCGACCTATAGCAGCGTTTTTCAAAAAGCGACGCTAATGCT
CGACCTATAGCGGCC
Found at i:7649654 original size:15 final size:16
Alignment explanation
Indices: 7649624--7649662 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
7649614 GGCAATTTTG
7649624 TAAA-TAAATGTAAGT
1 TAAATTAAATGTAAGT
*
7649639 TTAATTAAAT-TAAGT
1 TAAATTAAATGTAAGT
7649654 TAAATTAAA
1 TAAATTAAA
7649663 GAATGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (16 bp):
TAAATTAAATGTAAGT
Found at i:7652019 original size:43 final size:43
Alignment explanation
Indices: 7651972--7652078 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
7651962 TCAACGCTAC
* * * *
7651972 TGTCCCAAACAGGGTCTTACACGAAATC-GATTAACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACAATGCCAA
* *
7652015 TGTCCCAGACATGGTCTTACACGTAATCTCAATACAATGTCAA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAATACAATGCCAA
7652058 TGTCCCAGACATGGTCTTACA
1 TGTCCCAGACATGGTCTTACA
7652079 TGTAATCACA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 55 0.96
44 2 0.04
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAATACAATGCCAA
Found at i:7653595 original size:21 final size:21
Alignment explanation
Indices: 7653569--7653632 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
7653559 ATTGGGTGAA
*
7653569 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTTTTACGAGCTTCTGT
7653590 TCAGCTTTTACGAGCTTCTGT
1 TCAGCTTTTACGAGCTTCTGT
*
7653611 TCAGCTTTTATGAGCTTCTGT
1 TCAGCTTTTACGAGCTTCTGT
7653632 T
1 T
7653633 GGCTTATTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (21 bp):
TCAGCTTTTACGAGCTTCTGT
Found at i:7663367 original size:11 final size:11
Alignment explanation
Indices: 7663351--7663383 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
7663341 GTTACAAGAT
7663351 GAAATTAAATA
1 GAAATTAAATA
7663362 GAAATTAAATA
1 GAAATTAAATA
7663373 GAAATTAAATA
1 GAAATTAAATA
7663384 ATATTTAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (11 bp):
GAAATTAAATA
Found at i:7664951 original size:18 final size:18
Alignment explanation
Indices: 7664928--7664962 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7664918 TTGTCTTCAC
*
7664928 TATCGATACCAAAAATGT
1 TATCGATACAAAAAATGT
7664946 TATCGATACAAAAAATG
1 TATCGATACAAAAAATG
7664963 CATTCTAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (18 bp):
TATCGATACAAAAAATGT
Found at i:7665986 original size:22 final size:22
Alignment explanation
Indices: 7665910--7665986 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
7665900 AATAGAGCAA
*
7665910 TAAGCATCGAAGTGCAAATCAC
1 TAAGCATCGAAGTGCAAAACAC
* *
7665932 TAAGCA-CTAAAGTGCAAAACAG
1 TAAGCATC-GAAGTGCAAAACAC
* *
7665954 TAGGCACCGAAGTGCAAAACGA-
1 TAAGCATCGAAGTGCAAAAC-AC
7665976 TAAGCATCGAA
1 TAAGCATCGAA
7665987 TGCGAGACAG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.02
22 42 0.93
23 2 0.04
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (22 bp):
TAAGCATCGAAGTGCAAAACAC
Found at i:7666561 original size:19 final size:20
Alignment explanation
Indices: 7666514--7666562 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
7666504 TACAATATTT
*
7666514 ATATATTCTTATATTTTTCA
1 ATATATTCTTATATTTTCCA
* *
7666534 CTATCTTCTT-TATTTTCCA
1 ATATATTCTTATATTTTCCA
*
7666553 ATATTTTCTT
1 ATATATTCTT
7666563 GTAAACTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATATTCTTATATTTTCCA
Found at i:7666694 original size:14 final size:14
Alignment explanation
Indices: 7666672--7666706 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
7666662 GTTTACATGT
*
7666672 AAAAGGTTTTACGG
1 AAAATGTTTTACGG
7666686 AAAATGTTTTACGG
1 AAAATGTTTTACGG
7666700 AAAATGT
1 AAAATGT
7666707 ATTCTGCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (14 bp):
AAAATGTTTTACGG
Found at i:7667029 original size:16 final size:14
Alignment explanation
Indices: 7667008--7667042 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
7666998 ATATTTAGTC
7667008 ATATAATAAATTATTA
1 ATATAATAAA-TA-TA
7667024 ATATAATAAATATA
1 ATATAATAAATATA
7667038 ATATA
1 ATATA
7667043 TCATTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 2 0.11
16 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATAATAAATATA
Found at i:7667685 original size:14 final size:14
Alignment explanation
Indices: 7667663--7667701 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7667653 CTAGAAAAAT
*
7667663 AAATCATTTTCCAG
1 AAATTATTTTCCAG
*
7667677 AAATTATTTTCCGG
1 AAATTATTTTCCAG
*
7667691 AAGTTATTTTC
1 AAATTATTTTC
7667702 AATTAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (14 bp):
AAATTATTTTCCAG
Found at i:7669009 original size:25 final size:25
Alignment explanation
Indices: 7668962--7669010 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7668952 TTGGCTTAAC
**
7668962 ATTTACTAAGCAATATCGGATATTT
1 ATTTACTAAGCAATATCAAATATTT
* *
7668987 ATTTATTAGGCAATATCAAATATT
1 ATTTACTAAGCAATATCAAATATT
7669011 CAAATTATTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTTACTAAGCAATATCAAATATTT
Found at i:7670302 original size:37 final size:39
Alignment explanation
Indices: 7670215--7670311 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
7670205 TACACCAGAA
*
7670215 TGGCGACCAATGCCTCATCGGATAGCTCGAAGCAAATAAG
1 TGGCGACCAACGCCTCATCGGATAGCTCGAAGC-AATAAG
* * * *
7670255 TGACAACCAACGTCTCATCGGCTAAGC-CGAAGC-A-AAG
1 TGGCGACCAACGCCTCATCGGAT-AGCTCGAAGCAATAAG
7670292 TGGCGACCAACGCCTCATCG
1 TGGCGACCAACGCCTCATCG
7670312 AATCTATCCG
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 20 0.42
38 1 0.02
40 24 0.50
41 3 0.06
ACGTcount: A:0.31, C:0.30, G:0.24, T:0.15
Consensus pattern (39 bp):
TGGCGACCAACGCCTCATCGGATAGCTCGAAGCAATAAG
Found at i:7670582 original size:29 final size:27
Alignment explanation
Indices: 7670517--7670587 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 27
7670507 TAACAATTCA
7670517 ATCA-CAATTTCAAATTCACCACAAATC
1 ATCATCAA-TTCAAATTCACCACAAATC
* * *
7670544 ATTATACAATTCAATTTCACACATAAATAC
1 ATCAT-CAATTCAAATTCAC-CACAAAT-C
7670574 ATCATCAA-TCAAAT
1 ATCATCAATTCAAAT
7670588 CCGATTCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
27 3 0.09
28 15 0.43
29 12 0.34
30 5 0.14
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (27 bp):
ATCATCAATTCAAATTCACCACAAATC
Found at i:7671348 original size:16 final size:16
Alignment explanation
Indices: 7671327--7671357 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7671317 TTTCTTTTGT
*
7671327 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
7671343 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
7671358 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:7675092 original size:33 final size:33
Alignment explanation
Indices: 7675047--7675111 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
7675037 TTTATTTACC
*
7675047 AAAAATAAAAAATATTTTTTAAAAAATGAAATT
1 AAAAATAAAAAATATTTTTTAAAAAATAAAATT
*
7675080 AAAAATAGAAAATATTTTTTAAAAAATAAAAT
1 AAAAATAAAAAATATTTTTTAAAAAATAAAAT
7675112 GTGCCTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (33 bp):
AAAAATAAAAAATATTTTTTAAAAAATAAAATT
Found at i:7675626 original size:174 final size:174
Alignment explanation
Indices: 7675336--7675660 Score: 483
Period size: 174 Copynumber: 1.9 Consensus size: 174
7675326 AATTTTCCAA
* * * * *
7675336 ATTTTAGTTGCTTTTTTTACATTGTAAAACAATGGTTAAATTTTAATTTTGGCCCTTAAACTATA
1 ATTTTAGCTGCTTTTTTTACATTATAAAACAATGGTTAAATTTTAAATTTAGCCCCTAAACTATA
*
7675401 CTTAACTTAAGATTCAATCTATTTACTTTAATTTTTAGCATAATTTGGTCCCTCTAGTTTTTAAT
66 CTTAACTTAAGATTCAATCTATTTACTTTAATTTTTAGCATAATTTGGTCCCTCTACTTTTTAAT
*
7675466 GTAATTAGTTAGTCTAAATAGTTAATATTGTTCAATCTATTTAC
131 GTAATTAGTTAATCTAAATAGTTAATATTGTTCAATCTATTTAC
* * * *
7675510 ATTTTAGCTGC-TTTTTTACCTTATAAAACAATGGTTAAATTTTAAATTTAGCCCCTAAGCTTTG
1 ATTTTAGCTGCTTTTTTTACATTATAAAACAATGGTTAAATTTTAAATTTAGCCCCTAAACTATA
* * *
7675574 CTTAAACTTGAGATTTAATCTATTTACTTTAATTTTTTA-CATAATTTGGTCCCTTTACTTTTTA
66 CTT-AACTTAAGATTCAATCTATTTACTTTAA-TTTTTAGCATAATTTGGTCCCTCTACTTTTTA
*
7675638 ATGTCATTAGTTAATCTAAATAG
129 ATGTAATTAGTTAATCTAAATAG
7675661 ATCATTTCAC
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
173 48 0.36
174 80 0.60
175 6 0.04
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (174 bp):
ATTTTAGCTGCTTTTTTTACATTATAAAACAATGGTTAAATTTTAAATTTAGCCCCTAAACTATA
CTTAACTTAAGATTCAATCTATTTACTTTAATTTTTAGCATAATTTGGTCCCTCTACTTTTTAAT
GTAATTAGTTAATCTAAATAGTTAATATTGTTCAATCTATTTAC
Found at i:7676923 original size:3 final size:3
Alignment explanation
Indices: 7676915--7677050 Score: 272
Period size: 3 Copynumber: 45.3 Consensus size: 3
7676905 CATGGAAAAC
7676915 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7676963 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7677011 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7677051 AGACCTTGAC
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 133 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7677374 original size:16 final size:17
Alignment explanation
Indices: 7677353--7677397 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
7677343 ATTTACCCAG
7677353 CCCAAAACTCAACTA-C
1 CCCAAAACTCAACTATC
*
7677369 CCCAAAACCCAACTATC
1 CCCAAAACTCAACTATC
*
7677386 CCAAAAACTCAA
1 CCCAAAACTCAA
7677398 ATTAGCCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.47, C:0.42, G:0.00, T:0.11
Consensus pattern (17 bp):
CCCAAAACTCAACTATC
Found at i:7678136 original size:89 final size:90
Alignment explanation
Indices: 7677998--7678176 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 90
7677988 TTTTTTTATT
*
7677998 TTCAGCAGAAATGACCCATTTTTTTTTGTTAAATTTGGTTTATATAGAAGGATAAAACGACGTAG
1 TTCAGCAGAAATGACCCATTTTTTTTGGTTAAATTTGGTTTATATAGAAGGATAAAACGACGTAG
7678063 TTTCAATGGGATTTTTGAGACCACA
66 TTTCAATGGGATTTTTGAGACCACA
* *
7678088 TTCAGTAGAAATGACCCA-TTTTTTTGGTTAAATTTGGTTTATATAGAAGGATAAAACGATGTAG
1 TTCAGCAGAAATGACCCATTTTTTTTGGTTAAATTTGGTTTATATAGAAGGATAAAACGACGTAG
7678152 TTTCAATGGGATTTTTGAGACCACA
66 TTTCAATGGGATTTTTGAGACCACA
7678177 AAACGGCACC
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
89 69 0.80
90 17 0.20
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (90 bp):
TTCAGCAGAAATGACCCATTTTTTTTGGTTAAATTTGGTTTATATAGAAGGATAAAACGACGTAG
TTTCAATGGGATTTTTGAGACCACA
Found at i:7678635 original size:6 final size:6
Alignment explanation
Indices: 7678614--7678685 Score: 69
Period size: 6 Copynumber: 12.0 Consensus size: 6
7678604 AACTTAAACA
* *
7678614 TATTAT TATTACT T-TTAT TTTTAT TATTAT TATCAT T-TATAT TATTAT
1 TATTAT TATTA-T TATTAT TATTAT TATTAT TATTAT TAT-TAT TATTAT
*
7678662 TATTAT TACTT-T TATTAC TATTAT
1 TATTAT TA-TTAT TATTAT TATTAT
7678686 ATTTTCATCT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
5 5 0.09
6 45 0.82
7 5 0.09
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (6 bp):
TATTAT
Found at i:7678640 original size:9 final size:9
Alignment explanation
Indices: 7678614--7678685 Score: 69
Period size: 9 Copynumber: 8.0 Consensus size: 9
7678604 AACTTAAACA
7678614 TATTATTAT
1 TATTATTAT
7678623 TACTT-TTAT
1 TA-TTATTAT
*
7678632 TTTTATTAT
1 TATTATTAT
*
7678641 TATTATCAT
1 TATTATTAT
7678650 T-TATATTAT
1 TAT-TATTAT
7678659 TATTATTAT
1 TATTATTAT
7678668 TACTT-TTAT
1 TA-TTATTAT
*
7678677 TACTATTAT
1 TATTATTAT
7678686 ATTTTCATCT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
8 4 0.08
9 43 0.83
10 5 0.10
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (9 bp):
TATTATTAT
Found at i:7678678 original size:21 final size:21
Alignment explanation
Indices: 7678614--7678685 Score: 99
Period size: 21 Copynumber: 3.3 Consensus size: 21
7678604 AACTTAAACA
*
7678614 TATTATTATTACTTTTATTTT
1 TATTATTATTACTTTTATTAT
7678635 TATTATTATTATCATTTATATTAT
1 TATTATTATTA-C-TTT-TATTAT
*
7678659 TATTATTATTACTTTTATTAC
1 TATTATTATTACTTTTATTAT
7678680 TATTAT
1 TATTAT
7678686 ATTTTCATCT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
21 22 0.48
22 4 0.09
23 4 0.09
24 16 0.35
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTATTATTACTTTTATTAT
Found at i:7678848 original size:3 final size:3
Alignment explanation
Indices: 7678842--7678955 Score: 67
Period size: 3 Copynumber: 38.0 Consensus size: 3
7678832 ACTATTAACC
* *
7678842 TAT TAT TAT TCT TAT TAG TA- TAT TAT TAT T-T CCTAT T-T T-T TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT
* * * * * * *
7678884 TAT TAT TGT TGT TAT TAA CAT ATAT TAT TAT TAAT GTAC TGT TAT TCT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT -TAT TAT TAT TAT
7678932 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
7678956 AATACTATTA
Statistics
Matches: 87, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
2 9 0.10
3 70 0.80
4 6 0.07
5 2 0.02
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7682389 original size:26 final size:26
Alignment explanation
Indices: 7682360--7682441 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
7682350 TGATACAAAT
*
7682360 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7682386 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
7682412 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7682438 TGAT
1 TGAT
7682442 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7684312 original size:19 final size:19
Alignment explanation
Indices: 7684271--7684312 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7684261 CGCCTCTTTT
*
7684271 TGCATTCATTTCATTCATT
1 TGCATTCATTTCATTCATA
7684290 TGCATTACATTTCA-TCATA
1 TGCATT-CATTTCATTCATA
7684309 TGCA
1 TGCA
7684313 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (19 bp):
TGCATTCATTTCATTCATA
Found at i:7692686 original size:96 final size:95
Alignment explanation
Indices: 7692398--7692970 Score: 544
Period size: 96 Copynumber: 6.2 Consensus size: 95
7692388 CTCATCTCCA
* *
7692398 TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCGGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGA-TGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
* *
7692463 TT-GAAGCTATAAATCACAGATCTTATCTATT
65 TTAG-AGCTATAAATCACAGATCTTATCTCTC
* * * * * * * ** * *
7692494 TGAAGTTGCAATAGAGTAGATCAA-A-A-CAAACCTTATCTCCCTAAAGTTGTTGTGGAGCAGGT
1 TGAAGTTGCAGTGGAGCAGATGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGAT
* *
7692556 T---G----AAGTCACTAG-TCTTATCTCCC
66 TAGAGCTATAAATCAC-AGATCTTATCTCTC
* *
7692579 TAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGA-TGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
*
7692644 TTAGAGTTATAAATCACAGATCTTATCTCTC
65 TTAGAGCTATAAATCACAGATCTTATCTCTC
* * * *
7692675 TAAAGTTGCAGTGGAACAAACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGAAACAGA
1 TGAAGTTGCAGTGGAGCAGA-TGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
*
7692740 TTAAAGCTATAAATCACAGATCTTATCTCTC
65 TTAGAGCTATAAATCACAGATCTTATCTCTC
* ** * * * * *
7692771 TGAAGTTGTAGTAAAGTAGATCAA-A-A-CAAACCTTATCTCCCTGAAGTTGCTGTGG---AG--
1 TGAAGTTGCAGTGGAGCAGATGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGAT
* * * *
7692828 TAG-G-T-TGAAGTCACTGGTCTTATCTCCC
66 TAGAGCTAT-AAATCACAGATCTTATCTCTC
*
7692856 TGAAGTTGCAGTGGAGCAGACAGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGA-TGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
* *
7692921 TTAAAGCTATAAATAAACAGATCTTATCTCTC
65 TTAGAGCTATAAAT-CACAGATCTTATCTCTC
*
7692953 TGAAGTTGCAGTAGAGCA
1 TGAAGTTGCAGTGGAGCA
7692971 AATCATAGCA
Statistics
Matches: 383, Mismatches: 67, Indels: 53
0.76 0.13 0.11
Matches are distributed among these distances:
84 1 0.00
85 64 0.17
86 8 0.02
87 4 0.01
88 2 0.01
89 60 0.16
92 59 0.15
93 2 0.01
94 4 0.01
95 9 0.02
96 139 0.36
97 31 0.08
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (95 bp):
TGAAGTTGCAGTGGAGCAGATGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGAT
TAGAGCTATAAATCACAGATCTTATCTCTC
Found at i:7692688 original size:51 final size:45
Alignment explanation
Indices: 7692342--7692922 Score: 328
Period size: 45 Copynumber: 12.8 Consensus size: 45
7692332 ATTATGGCGG
* * * ** *
7692342 ATCTTATCTTCCTGAAGTTGCAGTGAAACAGATTAAAGCCATC-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
* * *
7692386 ATCTCATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
* * * *
7692431 ATCTTATTTCCCTAAAGTTGCGGTGGAACAGATTGAAGCTATAAATCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT--AGCA-A
*** * * ** *
7692481 GATCTTATCTATTTGAAGTTGCAATAGAGTAGA-TCAA-A-A-CAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
* * ** * * *
7692523 ACCTTATCTCCCTAAAGTTGTTGTGGAGCAGGTTGAAG-TCA-CTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT-AGCAA
* * *
7692567 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
* * *
7692612 ATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT-AGAGTTATAAATCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGA-AG--AT--AGCA-A
* * * *
7692662 GATCTTATCTCTCTAAAGTTGCAGTGGAACAAACTGAAGATAGCAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
* * * *
7692708 ATCTTATTTCCCTGAAGTTGCAGTGAAACAGATTAAAGCTATAAATCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG--AT--AGCA-A
* * * * *
7692758 GATCTTATCTCTCTGAAGTTGTAGT-AAAGTAGA-TCAA-A-A-CAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTGAAGATAGCAA
* * ** * **
7692800 ACCTTATCTCCCTGAAGTTGCTGTGGAGTAGGTTGAAG-TCA-CTG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAT-AGCAA
* * **
7692844 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
*
7692889 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
7692923 AAAGCTATAA
Statistics
Matches: 406, Mismatches: 96, Indels: 69
0.71 0.17 0.12
Matches are distributed among these distances:
41 44 0.11
42 9 0.02
43 4 0.01
44 108 0.27
45 129 0.32
46 1 0.00
47 11 0.03
49 11 0.03
50 12 0.03
51 76 0.19
52 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAA
Found at i:7692894 original size:277 final size:278
Alignment explanation
Indices: 7692400--7692964 Score: 907
Period size: 277 Copynumber: 2.0 Consensus size: 278
7692390 CATCTCCATG
* * * * *
7692400 AAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCGGTGGAACAGATT
1 AAGTTGCAGTGGAACAAACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGAAACAGATT
* * *
7692465 GAAGCTATAAATCACAGATCTTATCTATTTGAAGTTGCAATAGAGTAGATCAAAACAAACCTTAT
66 AAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAATAAAGTAGATCAAAACAAACCTTAT
*
7692530 CTCCCTAAAGTTGTTGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTAAAGTTGCAGTGGAG
131 CTCCCTAAAGTTGCTGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTAAAGTTGCAGTGGAG
** * * * *
7692595 CAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAGAGTTATAAAT-C
196 CAGACAGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATAA
7692659 ACAGATCTTATCTCTCTA
261 ACAGATCTTATCTCTCTA
*
7692677 AAGTTGCAGTGGAACAAACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGAAACAGATT
1 AAGTTGCAGTGGAACAAACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGAAACAGATT
* * *
7692742 AAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCAAAACAAACCTTAT
66 AAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAATAAAGTAGATCAAAACAAACCTTAT
* * * *
7692807 CTCCCTGAAGTTGCTGTGGAGTAGGTTGAAGTCACTGGTCTTATCTCCCTGAAGTTGCAGTGGAG
131 CTCCCTAAAGTTGCTGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTAAAGTTGCAGTGGAG
7692872 CAGACAGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATAA
196 CAGACAGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATAA
*
7692937 ACAGATCTTATCTCTCTG
261 ACAGATCTTATCTCTCTA
7692955 AAGTTGCAGT
1 AAGTTGCAGT
7692965 AGAGCAAATC
Statistics
Matches: 263, Mismatches: 24, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
277 236 0.90
278 27 0.10
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (278 bp):
AAGTTGCAGTGGAACAAACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGAAACAGATT
AAAGCTATAAATCACAGATCTTATCTATCTGAAGTTGCAATAAAGTAGATCAAAACAAACCTTAT
CTCCCTAAAGTTGCTGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTAAAGTTGCAGTGGAG
CAGACAGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATAA
ACAGATCTTATCTCTCTA
Found at i:7693274 original size:17 final size:16
Alignment explanation
Indices: 7693233--7693277 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
7693223 ATTTGCCCGG
7693233 CCCAAAACCCAACTAC
1 CCCAAAACCCAACTAC
*
7693249 CCCAAAACCTAACTAC
1 CCCAAAACCCAACTAC
7693265 CCCAAAAACCCAA
1 CCC-AAAACCCAA
7693278 ATTAGCCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 18 0.69
17 8 0.31
ACGTcount: A:0.47, C:0.47, G:0.00, T:0.07
Consensus pattern (16 bp):
CCCAAAACCCAACTAC
Found at i:7694424 original size:6 final size:6
Alignment explanation
Indices: 7694403--7694471 Score: 72
Period size: 6 Copynumber: 11.5 Consensus size: 6
7694393 AACTTAAACA
*
7694403 TATTAT TATTACT T-TTAT TTTTAT TATTAT TATT-T ATATTAT TATTAT
1 TATTAT TATTA-T TATTAT TATTAT TATTAT TATTAT -TATTAT TATTAT
*
7694451 TATTACT T-TTAT TACTAT TAT
1 TATTA-T TATTAT TATTAT TAT
7694472 ATTTTCATCT
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
5 5 0.09
6 44 0.81
7 5 0.09
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (6 bp):
TATTAT
Found at i:7694426 original size:15 final size:14
Alignment explanation
Indices: 7694403--7694471 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 14
7694393 AACTTAAACA
7694403 TATTATTATTACTTT
1 TATTATTATTA-TTT
*
7694418 TATTTTTATTA--T
1 TATTATTATTATTT
7694430 TATTATT-TATATTAT
1 TATTATTAT-TATT-T
7694445 TATTATTATTACTTT
1 TATTATTATTA-TTT
*
7694460 TATTACTATTAT
1 TATTATTATTAT
7694472 ATTTTCATCT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.20
14 1 0.02
15 31 0.69
16 3 0.07
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATTATTATTT
Found at i:7694429 original size:9 final size:9
Alignment explanation
Indices: 7694403--7694471 Score: 72
Period size: 9 Copynumber: 7.7 Consensus size: 9
7694393 AACTTAAACA
7694403 TATTATTAT
1 TATTATTAT
7694412 TACTT-TTAT
1 TA-TTATTAT
*
7694421 TTTTATTAT
1 TATTATTAT
7694430 TATTATT-T
1 TATTATTAT
7694438 ATATTATTAT
1 -TATTATTAT
7694448 TATTATTACT
1 TATTATTA-T
*
7694458 T-TTATTAC
1 TATTATTAT
7694466 TATTAT
1 TATTAT
7694472 ATTTTCATCT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
8 4 0.08
9 42 0.82
10 5 0.10
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (9 bp):
TATTATTAT
Found at i:7694429 original size:21 final size:21
Alignment explanation
Indices: 7694403--7694471 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
7694393 AACTTAAACA
*
7694403 TATTATTATTACTTTTATTTT
1 TATTATTATTACTTTTATTAT
7694424 TATTATTATTA-TTTATATTAT
1 TATTATTATTACTTT-TATTAT
*
7694445 TATTATTATTACTTTTATTAC
1 TATTATTATTACTTTTATTAT
7694466 TATTAT
1 TATTAT
7694472 ATTTTCATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.07
21 38 0.86
22 3 0.07
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTATTATTACTTTTATTAT
Found at i:7694511 original size:50 final size:52
Alignment explanation
Indices: 7694457--7694555 Score: 118
Period size: 50 Copynumber: 1.9 Consensus size: 52
7694447 TTATTATTAC
*
7694457 TTTTA-TTA-CTA-TTATATTTTCATCTATATTTATTTTGT-TATT-TATCTTAT
1 TTTTATTTATCTATTTACATTTTC-TCT-TA-TTATTTTGTGTATTATATCTTAT
*
7694507 TTTTATTTATCTATTTACATTTTCTGTTATTATTTTGTGTATTATATCT
1 TTTTATTTATCTATTTACATTTTCTCTTATTATTTTGTGTATTATATCT
7694556 ACATTTATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
50 14 0.33
51 9 0.21
52 10 0.24
53 9 0.21
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.66
Consensus pattern (52 bp):
TTTTATTTATCTATTTACATTTTCTCTTATTATTTTGTGTATTATATCTTAT
Found at i:7694634 original size:3 final size:3
Alignment explanation
Indices: 7694628--7694738 Score: 70
Period size: 3 Copynumber: 37.0 Consensus size: 3
7694618 ACTATTAACC
* *
7694628 TAT TAT TAT TCT TAT TAG TA- TAT TAT TAT T-T CCTAT T-T T-T TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT
* * * * * *
7694670 TAT TAT TGT TGT TAT TAA CAT ATAT TAT TAT TAAT GTAC TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT -TAT TAT TAT TAT
7694718 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
7694739 ACTATTAAAC
Statistics
Matches: 86, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
2 9 0.10
3 69 0.80
4 6 0.07
5 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7696706 original size:125 final size:123
Alignment explanation
Indices: 7696569--7696818 Score: 466
Period size: 125 Copynumber: 2.0 Consensus size: 123
7696559 ACATCTAATG
7696569 TACTGACATAATATAAAGAAA-GATTCAATATATATATTAAAATATAAAATAAAGTGAGCAATTA
1 TACTGACATAATATAAAGAAATG-TTCAATATATATATTAAAATATAAAATAAAGTGAGCAATTA
7696633 TTGATAAAAAATACCTAAAATATAAATTAAAAAAATGTTTAAAATAAGTTATATATAATAA
65 TTGATAAAAAATACCTAAAATATAAATT--AAAAATGTTTAAAATAAGTTATATATAATAA
7696694 TACTGACATAATATAAAGAAATGTTCAATATATATATTAAAATATAAAATAAAGTGAGCAATTAT
1 TACTGACATAATATAAAGAAATGTTCAATATATATATTAAAATATAAAATAAAGTGAGCAATTAT
7696759 TGATAAAAAATACCTAAAATATAAATTAAAAATGTTTAAAATAAGTTATATATAATAA
66 TGATAAAAAATACCTAAAATATAAATTAAAAATGTTTAAAATAAGTTATATATAATAA
7696817 TA
1 TA
7696819 TAATATGAAT
Statistics
Matches: 124, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
123 33 0.27
125 90 0.73
126 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (123 bp):
TACTGACATAATATAAAGAAATGTTCAATATATATATTAAAATATAAAATAAAGTGAGCAATTAT
TGATAAAAAATACCTAAAATATAAATTAAAAATGTTTAAAATAAGTTATATATAATAA
Found at i:7696844 original size:21 final size:19
Alignment explanation
Indices: 7696810--7696871 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
7696800 TAAGTTATAT
7696810 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
7696832 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
7696854 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
7696872 GTAATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:7696921 original size:21 final size:22
Alignment explanation
Indices: 7696895--7696936 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7696885 AAAATATAGT
*
7696895 AAAATAAATAGTATA-AAAAAC
1 AAAATAAATAATATATAAAAAC
7696916 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATATAAAAA
7696937 TATAGGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAC
Found at i:7697286 original size:14 final size:14
Alignment explanation
Indices: 7697256--7697320 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
7697246 CAATTTTATA
7697256 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
7697268 GAAATATATAAAAT
1 AAAATATATAAAAT
*
7697282 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
7697296 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
7697312 AAAATATAT
1 AAAATATAT
7697321 GATAAAATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
12 8 0.20
13 3 0.07
14 16 0.39
15 7 0.17
16 7 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:7699365 original size:206 final size:206
Alignment explanation
Indices: 7699004--7699559 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 206
7698994 AAATCCACTT
* * *
7699004 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * * *
7699069 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATACCGAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** *
7699134 GGATCTGCTTTAGTCTAATCATCTGAAGGTTATATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
7699199 GAGATGCCAAA
196 GAGATGCCAAA
* *
7699210 CTTTGATTTGTTCTCTGACAATACAGAGATGCCACATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
7699275 GTGAAAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
7699340 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
7699405 GAGATGCCAAA
196 GAGATGCCAAA
7699416 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
7699481 GT-ACAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 GTGA-AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
7699545 TGGATCTTGCTTCAG
130 TGGATC-TGCTTCAG
7699560 CCAGATCTGC
Statistics
Matches: 322, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 313 0.97
207 8 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGATGCCAAA
Found at i:7704562 original size:30 final size:30
Alignment explanation
Indices: 7704528--7704588 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
7704518 TCCTCTTCTG
7704528 CATTGATGCTTATTAACCGTCCATCTGTCA
1 CATTGATGCTTATTAACCGTCCATCTGTCA
*
7704558 CATTGATGGTTATTAACCGTCCATCTGTCA
1 CATTGATGCTTATTAACCGTCCATCTGTCA
7704588 C
1 C
7704589 TAACTTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (30 bp):
CATTGATGCTTATTAACCGTCCATCTGTCA
Found at i:7705808 original size:34 final size:34
Alignment explanation
Indices: 7705769--7705833 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
7705759 TGTCTTCATT
* *
7705769 TTAGCAATATCTTCCTTGATGCTTCTTTCCCACC
1 TTAGCAACATCTTCCTTGATGCTTCCTTCCCACC
* *
7705803 TTAGCAACATCTTTCTTGATTCTTCCTTCCC
1 TTAGCAACATCTTCCTTGATGCTTCCTTCCC
7705834 TAATTTCATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.17, C:0.32, G:0.08, T:0.43
Consensus pattern (34 bp):
TTAGCAACATCTTCCTTGATGCTTCCTTCCCACC
Found at i:7711293 original size:21 final size:19
Alignment explanation
Indices: 7711269--7711320 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 19
7711259 TTAATAATAT
7711269 AATATGAATAAAAT-ATAAGGA
1 AATAT-AATAAAATGATAA--A
7711290 AATATAATATAAAATGATAAA
1 AATAT-A-ATAAAATGATAAA
7711311 AATATAATAA
1 AATATAATAA
7711321 GTAATTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 1 0.04
21 12 0.43
22 7 0.25
23 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (19 bp):
AATATAATAAAATGATAAA
Found at i:7711370 original size:21 final size:22
Alignment explanation
Indices: 7711344--7711385 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7711334 AAAATATAGT
*
7711344 AAAATAAATAGTATA-AAAAAC
1 AAAATAAATAATATATAAAAAC
7711365 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATATAAAAA
7711386 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAC
Found at i:7711735 original size:14 final size:14
Alignment explanation
Indices: 7711705--7711769 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
7711695 CAATTTTATA
7711705 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
7711717 GAAATATATAAAAT
1 AAAATATATAAAAT
*
7711731 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
7711745 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
7711761 AAAATATAT
1 AAAATATAT
7711770 GATAAAATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
12 8 0.20
13 3 0.07
14 16 0.39
15 7 0.17
16 7 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:7717563 original size:19 final size:19
Alignment explanation
Indices: 7717539--7717575 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7717529 AGATATTCCT
7717539 TTAGTGTATTTGATTATCA
1 TTAGTGTATTTGATTATCA
7717558 TTAGTGTATTTGATTATC
1 TTAGTGTATTTGATTATC
7717576 TTGTGGGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.54
Consensus pattern (19 bp):
TTAGTGTATTTGATTATCA
Found at i:7720473 original size:27 final size:27
Alignment explanation
Indices: 7720380--7720475 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
7720370 AATAACTGAT
* *
7720380 TTCGCACACTTAGTGCTCAGAAAT-TAA
1 TTCGCACACATAGTGCTCAG-AATCAAA
* * *
7720407 TTCACACACATAGTGCTTA-AATCCAA
1 TTCGCACACATAGTGCTCAGAATCAAA
* *
7720433 CTCGCACACATAGTGCTCAGTATCAAA
1 TTCGCACACATAGTGCTCAGAATCAAA
*
7720460 TTCGCACACTTAGTGC
1 TTCGCACACATAGTGC
7720476 ATCCCTCAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.05
26 18 0.32
27 35 0.62
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
TTCGCACACATAGTGCTCAGAATCAAA
Found at i:7721917 original size:20 final size:20
Alignment explanation
Indices: 7721889--7721928 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7721879 ATTCAAAACC
7721889 TCAACATTCTAAAGACATAA
1 TCAACATTCTAAAGACATAA
*
7721909 TCAATATTCTAAAGACATAA
1 TCAACATTCTAAAGACATAA
7721929 CACTTTAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.28
Consensus pattern (20 bp):
TCAACATTCTAAAGACATAA
Found at i:7722167 original size:19 final size:19
Alignment explanation
Indices: 7722139--7722178 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7722129 TGATGCTTTA
*
7722139 ATATGATGTAGTACTAATT
1 ATATGATGTAATACTAATT
* *
7722158 ATATGGTGTAATACTAGTT
1 ATATGATGTAATACTAATT
7722177 AT
1 AT
7722179 GCACTTGGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (19 bp):
ATATGATGTAATACTAATT
Found at i:7722439 original size:20 final size:20
Alignment explanation
Indices: 7722414--7722460 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7722404 TGTATTTATT
* *
7722414 TATAAATAAATATTGCAATA
1 TATAAATAAATAATGCAAAA
* *
7722434 TATAAAAAAATAATGTAAAA
1 TATAAATAAATAATGCAAAA
7722454 TATAAAT
1 TATAAAT
7722461 TTAATAGATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (20 bp):
TATAAATAAATAATGCAAAA
Found at i:7731282 original size:21 final size:20
Alignment explanation
Indices: 7731258--7731297 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7731248 TTTTAAAAAA
7731258 AATATAAAATTTGGAATTTTT
1 AATA-AAAATTTGGAATTTTT
* *
7731279 AATAAATATTTTGAATTTT
1 AATAAAAATTTGGAATTTT
7731298 AAAATTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (20 bp):
AATAAAAATTTGGAATTTTT
Found at i:7736271 original size:67 final size:67
Alignment explanation
Indices: 7736163--7736292 Score: 206
Period size: 67 Copynumber: 1.9 Consensus size: 67
7736153 AACATCCTCC
**
7736163 GAACCACAAATATTTAGCTCTTGTATTAAAATAAAATTGATATATATATTTAAAAAGGAAAAGAG
1 GAACCACAAATATTTAGCTCTTGTATTAAAATAAAATTGATATATATAAATAAAAAGGAAAAGAG
7736228 GG
66 GG
* * * *
7736230 GAACCACAAATATTTAGTTCTTGTATTAATATAAAATTGATATGTATAAATATAAAGGAAAAG
1 GAACCACAAATATTTAGCTCTTGTATTAAAATAAAATTGATATATATAAATAAAAAGGAAAAG
7736293 GGGATGTTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.32
Consensus pattern (67 bp):
GAACCACAAATATTTAGCTCTTGTATTAAAATAAAATTGATATATATAAATAAAAAGGAAAAGAG
GG
Found at i:7742757 original size:23 final size:23
Alignment explanation
Indices: 7742731--7742791 Score: 122
Period size: 23 Copynumber: 2.7 Consensus size: 23
7742721 AACCGTTTAT
7742731 TCAATTTGTTTGAAAGAAAACCC
1 TCAATTTGTTTGAAAGAAAACCC
7742754 TCAATTTGTTTGAAAGAAAACCC
1 TCAATTTGTTTGAAAGAAAACCC
7742777 TCAATTTGTTTGAAA
1 TCAATTTGTTTGAAA
7742792 CCTTTCACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (23 bp):
TCAATTTGTTTGAAAGAAAACCC
Found at i:7743166 original size:30 final size:30
Alignment explanation
Indices: 7743091--7743166 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
7743081 ACAATTTGAT
*
7743091 TTTTTTTGTACGTATTATATCTGACTTCCA
1 TTTTTTTGTTCGTATTATATCTGACTTCCA
* ** * **
7743121 ATTTTTAATTCGTATTATATCTTACTTTTA
1 TTTTTTTGTTCGTATTATATCTGACTTCCA
*
7743151 TTTTTTTGTTGGTATT
1 TTTTTTTGTTCGTATT
7743167 CGTGAGTGAC
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.61
Consensus pattern (30 bp):
TTTTTTTGTTCGTATTATATCTGACTTCCA
Found at i:7743257 original size:4 final size:4
Alignment explanation
Indices: 7743248--7743598 Score: 121
Period size: 4 Copynumber: 82.2 Consensus size: 4
7743238 CTTTACTGTT
* * ** *
7743248 TATG TATG TATG TATG TATG TTATG TTTT TAAA T-TG TTAT- TATAT TATG
1 TATG TATG TATG TATG TATG -TATG TATG TATG TATG -TATG TAT-G TATG
* * * * * *
7743297 TATG TAATG TACTG TTAAG CATG TATG TTATA TTTG TATA TTTG TATG
1 TATG T-ATG TA-TG -TATG TATG TATG -TATG TATG TATG TATG TATG
*
7743345 TATG T-TA TAT- TATG TTATG TAATG TTATG TATG TATG TTATG T-T-
1 TATG TATG TATG TATG -TATG T-ATG -TATG TATG TATG -TATG TATG
* * *
7743389 TACTG TTATG TTTG TATA TTTG TATG TATG TTATG TTATG TAGTG TTATG
1 TA-TG -TATG TATG TATG TATG TATG TATG -TATG -TATG TA-TG -TATG
* * * * *
7743439 TATAT TATG TATG TTTG TTATG TGT- TATAT TACTG TTATG TTTG TAAAT-
1 TAT-G TATG TATG TATG -TATG TATG TAT-G TA-TG -TATG TATG T--ATG
* * *
7743488 TATG TCATG T-T- TAATG TATG TATAC TATG T-GG TATAT TATTG TTATGCG
1 TATG T-ATG TATG T-ATG TATG TAT-G TATG TATG TAT-G TA-TG -TAT--G
7743537 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7743585 TATG TATG TTATG T
1 TATG TATG -TATG T
7743599 GTAGCACTGT
Statistics
Matches: 262, Mismatches: 42, Indels: 86
0.67 0.11 0.22
Matches are distributed among these distances:
2 2 0.01
3 16 0.06
4 153 0.58
5 73 0.28
6 17 0.06
7 1 0.00
ACGTcount: A:0.25, C:0.02, G:0.20, T:0.54
Consensus pattern (4 bp):
TATG
Found at i:7743362 original size:5 final size:5
Alignment explanation
Indices: 7743341--7743480 Score: 100
Period size: 5 Copynumber: 28.2 Consensus size: 5
7743331 TGTATATTTG
* *
7743341 TATG- TATGT TATAT TATGT TATGT AATGT TATG- TATG- TATGT TATGTT
1 TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATGT TATG-T
*
7743389 TACTGT TATGT T-TGT ATATTT GTATG- TATGT TATGT TATG- TAGTGT
1 TA-TGT TATGT TATGT -TATGT -TATGT TATGT TATGT TATGT TA-TGT
* *
7743435 TATG- TATAT TATG- TATGT T-TGT TATGTGT TATAT TACTGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TA--TGT TATGT TA-TGT TATGT
7743480 T
1 T
7743481 TGTAAATTAT
Statistics
Matches: 110, Mismatches: 11, Indels: 29
0.73 0.07 0.19
Matches are distributed among these distances:
4 32 0.29
5 54 0.49
6 17 0.15
7 7 0.06
ACGTcount: A:0.22, C:0.01, G:0.19, T:0.57
Consensus pattern (5 bp):
TATGT
Found at i:7743405 original size:70 final size:69
Alignment explanation
Indices: 7743322--7743457 Score: 204
Period size: 70 Copynumber: 2.0 Consensus size: 69
7743312 TAAGCATGTA
7743322 TGTTATATTTGTATATTTGTATGTATGTTATATTATGTTA-TGTAATGT-TATGTATGTATGTTA
1 TGTTATATTTGTATATTTGTATGTATGTTATATTATG-TAGTGTAATGTATAT-TATGTATGTT-
7743385 TGTTTAC
63 TGTTTAC
* * *
7743392 TGTTATGTTTGTATATTTGTATGTATGTTATGTTATGTAGTGTTATGTATATTATGTATGTTTGT
1 TGTTATATTTGTATATTTGTATGTATGTTATATTATGTAGTGTAATGTATATTATGTATGTTTGT
7743457 T
66 T
7743458 ATGTGTTATA
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
69 6 0.10
70 52 0.85
71 3 0.05
ACGTcount: A:0.22, C:0.01, G:0.19, T:0.58
Consensus pattern (69 bp):
TGTTATATTTGTATATTTGTATGTATGTTATATTATGTAGTGTAATGTATATTATGTATGTTTGT
TTAC
Found at i:7743413 original size:37 final size:36
Alignment explanation
Indices: 7743320--7743475 Score: 162
Period size: 37 Copynumber: 4.3 Consensus size: 36
7743310 GTTAAGCATG
* *
7743320 TATGTTATATTTGTATATTTGTATGTATGTTAT-AT
1 TATGTTATGTTTGTATATTTGTATGTATGTTATGTT
*
7743355 TATGTTATGTAATGT-TA--TGTATGTATGTTATGTT
1 TATGTTATGT-TTGTATATTTGTATGTATGTTATGTT
7743389 TACTGTTATGTTTGTATATTTGTATGTATGTTATG-T
1 TA-TGTTATGTTTGTATATTTGTATGTATGTTATGTT
*
7743425 TATG-TAGTGTTATGTATATTATGTATGTTTGTTATGTGT
1 TATGTTA-TGTT-TGTATATT-TGTATGTATGTTATGT-T
*
7743464 TATATTACTGTT
1 TATGTTA-TGTT
7743476 ATGTTTGTAA
Statistics
Matches: 102, Mismatches: 7, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
33 14 0.14
34 8 0.08
35 27 0.26
36 14 0.14
37 29 0.28
39 4 0.04
40 6 0.06
ACGTcount: A:0.22, C:0.01, G:0.19, T:0.58
Consensus pattern (36 bp):
TATGTTATGTTTGTATATTTGTATGTATGTTATGTT
Found at i:7743973 original size:24 final size:24
Alignment explanation
Indices: 7743941--7743999 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
7743931 GGCGCGACTC
*
7743941 TTTTTTTTTATATTAAAATATT-TT
1 TTTTTTTTTA-AATAAAATATTATT
7743965 TTTTGTTTTTAAATAAAATATTATT
1 TTTT-TTTTTAAATAAAATATTATT
7743990 TTTTTATTTT
1 TTTTT-TTTT
7744000 CAGATCAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 15 0.48
25 16 0.52
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTTTTTTTAAATAAAATATTATT
Found at i:7747361 original size:17 final size:18
Alignment explanation
Indices: 7747339--7747374 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7747329 AGTTGACTAT
7747339 TTAAATTGA-AAAAAAAA
1 TTAAATTGATAAAAAAAA
*
7747356 TTAAATTGATAAATAAAA
1 TTAAATTGATAAAAAAAA
7747374 T
1 T
7747375 GCCAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
TTAAATTGATAAAAAAAA
Found at i:7747635 original size:33 final size:33
Alignment explanation
Indices: 7747593--7747672 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
7747583 CTTGAGTCGA
*
7747593 GAGGAGTGGAGTACGGCAGTGGAGACGGACCGG
1 GAGGAGTGGAGTACGACAGTGGAGACGGACCGG
* * * *
7747626 GAGGAGTGGAGTATGACGGTGTATACGGACCGG
1 GAGGAGTGGAGTACGACAGTGGAGACGGACCGG
*
7747659 AAGGAGTGGAGTAC
1 GAGGAGTGGAGTAC
7747673 TGAGATAGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.26, C:0.12, G:0.47, T:0.14
Consensus pattern (33 bp):
GAGGAGTGGAGTACGACAGTGGAGACGGACCGG
Found at i:7747685 original size:33 final size:31
Alignment explanation
Indices: 7747594--7747685 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 31
7747584 TTGAGTCGAG
* * *
7747594 AGGAGTGGAGTACGGCAGTGGAGACGGACCGGG
1 AGGAGTGGAGTACTG-AGT-GATACGGACCGGA
7747627 AGGAGTGGAGTA-TGACGGTGTATACGGACCGGA
1 AGGAGTGGAGTACTGA--GTG-ATACGGACCGGA
7747660 AGGAGTGGAGTACTGAGATAGATACG
1 AGGAGTGGAGTACTGAG-T-GATACG
7747686 AGCCAAGATG
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
31 1 0.02
32 3 0.06
33 42 0.84
34 4 0.08
ACGTcount: A:0.28, C:0.12, G:0.45, T:0.15
Consensus pattern (31 bp):
AGGAGTGGAGTACTGAGTGATACGGACCGGA
Found at i:7750293 original size:11 final size:10
Alignment explanation
Indices: 7750274--7750323 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 10
7750264 TTTTTTTTTC
7750274 TTTCTTCT-T
1 TTTCTTCTCT
*
7750283 CTTCTTCTCTT
1 TTTCTTCTC-T
*
7750294 TTTCTTCTCC
1 TTTCTTCTCT
7750304 TTTC-TCTCT
1 TTTCTTCTCT
7750313 TTTCTTTCTCT
1 TTTC-TTCTCT
7750324 CTTCCGGTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 15 0.45
10 4 0.12
11 14 0.42
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTCTTCTCT
Found at i:7750299 original size:20 final size:20
Alignment explanation
Indices: 7750274--7750315 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7750264 TTTTTTTTTC
*
7750274 TTTCTTCTTC-TTCTTCTCTT
1 TTTCTTCTCCTTTC-TCTCTT
7750294 TTTCTTCTCCTTTCTCTCTT
1 TTTCTTCTCCTTTCTCTCTT
7750314 TT
1 TT
7750316 CTTTCTCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTCTTCTCCTTTCTCTCTT
Found at i:7750322 original size:20 final size:18
Alignment explanation
Indices: 7750272--7750318 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
7750262 CTTTTTTTTT
*
7750272 TCTTTCTTCTTCTTC-TTC
1 TCTTT-TTCTTCTCCTTTC
7750290 TCTTTTTCTTCTCCTTTC
1 TCTTTTTCTTCTCCTTTC
7750308 TCTCTTTTCTT
1 TCT-TTTTCTT
7750319 TCTCTCTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 8 0.31
18 11 0.42
19 7 0.27
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
TCTTTTTCTTCTCCTTTC
Found at i:7752486 original size:42 final size:42
Alignment explanation
Indices: 7752440--7752578 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 42
7752430 CGAAGGTTGC
* * *
7752440 ACAGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGA
1 ACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAA
* * * * *
7752482 ACAGAAGCTCGTAGGAGTTGAACAAAAACCCATAAGGGTTAA
1 ACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAA
* * * * *
7752524 ACTGAAGCTTAAAAGAGCTAAACGGAAACCCATTAGGGTTAA
1 ACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAA
*
7752566 ACAGAAACTCATA
1 ACAGAAGCTCATA
7752579 CGAGTTAACA
Statistics
Matches: 75, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
ACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAA
Found at i:7752585 original size:21 final size:21
Alignment explanation
Indices: 7752440--7752586 Score: 78
Period size: 21 Copynumber: 7.0 Consensus size: 21
7752430 CGAAGGTTGC
* * * *
7752440 ACAGAAGCACATAAGTGCTAA
1 ACAGAAACCCATAAGAGTTAA
* *
7752461 ACAGAAACCCATAAGGGTTGA
1 ACAGAAACCCATAAGAGTTAA
* * * * *
7752482 ACAGAAGCTCGTAGGAGTTGA
1 ACAGAAACCCATAAGAGTTAA
* *
7752503 ACAAAAACCCATAAGGGTTAA
1 ACAGAAACCCATAAGAGTTAA
* * ** * *
7752524 ACTGAAGCTTAAAAGAGCTAA
1 ACAGAAACCCATAAGAGTTAA
* * *
7752545 ACGGAAACCCATTAGGGTTAA
1 ACAGAAACCCATAAGAGTTAA
* *
7752566 ACAGAAACTCATACGAGTTAA
1 ACAGAAACCCATAAGAGTTAA
7752587 CAAAAGCTCA
Statistics
Matches: 88, Mismatches: 38, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 88 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (21 bp):
ACAGAAACCCATAAGAGTTAA
Found at i:7752690 original size:24 final size:24
Alignment explanation
Indices: 7752663--7752710 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
7752653 TACTTGAGTA
7752663 ATTTACCGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCCTTTGC
* *
7752687 ATTTACCGTCACTTTATCCTTTGC
1 ATTTACCGTCAATTCATCCTTTGC
7752711 CACAGAACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.29, G:0.08, T:0.44
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCCTTTGC
Found at i:7752983 original size:129 final size:129
Alignment explanation
Indices: 7752753--7752992 Score: 480
Period size: 129 Copynumber: 1.9 Consensus size: 129
7752743 CTCAATTAAA
7752753 GTTTTGAACAATCAATTCAAATTCATAATTTAACAATAATTTTAGTTTCAACAATAAATATGAAT
1 GTTTTGAACAATCAATTCAAATTCATAATTTAACAATAATTTTAGTTTCAACAATAAATATGAAT
7752818 AAATACATAATACCATTCATTAATTTAACATATAACGTTAAAGTTTTGAACAATCAATCCAATC
66 AAATACATAATACCATTCATTAATTTAACATATAACGTTAAAGTTTTGAACAATCAATCCAATC
7752882 GTTTTGAACAATCAATTCAAATTCATAATTTAACAATAATTTTAGTTTCAACAATAAATATGAAT
1 GTTTTGAACAATCAATTCAAATTCATAATTTAACAATAATTTTAGTTTCAACAATAAATATGAAT
7752947 AAATACATAATACCATTCATTAATTTAACATATAACGTTAAAGTTT
66 AAATACATAATACCATTCATTAATTTAACATATAACGTTAAAGTTT
7752993 AACCATACGA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 111 1.00
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (129 bp):
GTTTTGAACAATCAATTCAAATTCATAATTTAACAATAATTTTAGTTTCAACAATAAATATGAAT
AAATACATAATACCATTCATTAATTTAACATATAACGTTAAAGTTTTGAACAATCAATCCAATC
Found at i:7760115 original size:29 final size:30
Alignment explanation
Indices: 7760056--7760113 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7760046 TCCGAGCCTT
*
7760056 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
7760086 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
7760114 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:7760343 original size:13 final size:13
Alignment explanation
Indices: 7760325--7760356 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7760315 TTTCCAGCAA
7760325 TTATGAATTTATT
1 TTATGAATTTATT
7760338 TTATGAATTTATT
1 TTATGAATTTATT
*
7760351 TGATGA
1 TTATGA
7760357 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:7760564 original size:50 final size:50
Alignment explanation
Indices: 7760451--7760692 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
7760441 ATTTGGGTAA
* * *
7760451 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
7760507 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
7760557 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
7760607 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
7760657 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
7760693 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:7760640 original size:100 final size:103
Alignment explanation
Indices: 7760451--7760700 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
7760441 ATTTGGGTAA
7760451 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
7760516 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
7760557 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
7760619 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
7760657 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
7760701 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Done.