Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 24 of 182
Found at i:8047995 original size:3 final size:3
Alignment explanation
Indices: 8047989--8048205 Score: 434
Period size: 3 Copynumber: 72.3 Consensus size: 3
8047979 GCTTCAATTT
8047989 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8048037 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8048085 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8048133 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8048181 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
8048206 GTTCTTTCTA
Statistics
Matches: 214, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 214 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8049693 original size:25 final size:25
Alignment explanation
Indices: 8049665--8049720 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
8049655 AATAACATAA
* * *
8049665 ATAATAGTATTTAAATCTCAAACTT
1 ATAAAAGTAATTAAATATCAAACTT
8049690 ATAAAAGTAATTAAATATCAAACTT
1 ATAAAAGTAATTAAATATCAAACTT
*
8049715 AAAAAA
1 ATAAAA
8049721 TATTAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (25 bp):
ATAAAAGTAATTAAATATCAAACTT
Found at i:8049732 original size:25 final size:25
Alignment explanation
Indices: 8049675--8049726 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
8049665 ATAATAGTAT
* *
8049675 TTAAATCTCAAACTTATAAAAGTAA
1 TTAAATATCAAACTTATAAAAATAA
8049700 TTAAATATCAAACTTA-AAAAAT-A
1 TTAAATATCAAACTTATAAAAATAA
8049723 TTAA
1 TTAA
8049727 TTATATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 5 0.20
25 15 0.60
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (25 bp):
TTAAATATCAAACTTATAAAAATAA
Found at i:8053101 original size:23 final size:23
Alignment explanation
Indices: 8053074--8053117 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8053064 ACTAGTAATC
* *
8053074 AAAATTACTCAAATAATTTCATA
1 AAAATTAATCAAATAAATTCATA
8053097 AAAATTAATCAAATAAATTCA
1 AAAATTAATCAAATAAATTCA
8053118 AGTGCATGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (23 bp):
AAAATTAATCAAATAAATTCATA
Found at i:8054234 original size:20 final size:20
Alignment explanation
Indices: 8054209--8054248 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8054199 CATTAAAAGG
*
8054209 TCAGTGCTTGTGCTTCCATC
1 TCAGTGCTAGTGCTTCCATC
8054229 TCAGTGCTAGTGCTTCCATC
1 TCAGTGCTAGTGCTTCCATC
8054249 ATTCACTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.30, G:0.20, T:0.38
Consensus pattern (20 bp):
TCAGTGCTAGTGCTTCCATC
Found at i:8063490 original size:2 final size:2
Alignment explanation
Indices: 8063483--8063514 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8063473 TTGTTTTGGC
8063483 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8063515 CAATTCCCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8064429 original size:31 final size:29
Alignment explanation
Indices: 8064394--8064460 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 29
8064384 CATATCTAAC
*
8064394 TTTAATTTAATATGTAATTATATACATCAA
1 TTTAATTTAATATATAATTATATACAT-AA
*
8064424 TTTTAATTTAATATATAATTATATATATAA
1 -TTTAATTTAATATATAATTATATACATAA
8064454 TTTAATT
1 TTTAATT
8064461 GTGATTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 7 0.21
30 2 0.06
31 25 0.74
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.52
Consensus pattern (29 bp):
TTTAATTTAATATATAATTATATACATAA
Found at i:8065584 original size:3 final size:3
Alignment explanation
Indices: 8065576--8065606 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
8065566 GCTTACTTGT
*
8065576 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8065607 CTTCTTGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:8068185 original size:21 final size:21
Alignment explanation
Indices: 8068160--8068203 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8068150 ATTGGGCTGT
* *
8068160 TACACTCCACCTGTTTTGGAG
1 TACACTCCACCTGCTGTGGAG
8068181 TACACTCCACCTGCTGTGGAG
1 TACACTCCACCTGCTGTGGAG
8068202 TA
1 TA
8068204 TTGCTCGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (21 bp):
TACACTCCACCTGCTGTGGAG
Found at i:8074976 original size:28 final size:28
Alignment explanation
Indices: 8074916--8074978 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
8074906 ATGCACTTAA
*
8074916 CATTAAA-TTTTTTATTTATTAGAAAAT
1 CATTAAATTTTTTTATTTATTAAAAAAT
**
8074943 GTTTAAATTTTTATTATTT-TTAAAAAAT
1 CATTAAATTTTT-TTATTTATTAAAAAAT
8074971 CATTAAAT
1 CATTAAAT
8074979 AATTTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 5 0.17
28 18 0.62
29 6 0.21
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (28 bp):
CATTAAATTTTTTTATTTATTAAAAAAT
Found at i:8076035 original size:14 final size:14
Alignment explanation
Indices: 8076012--8076041 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8076002 ACCTAAAAGT
*
8076012 TTTCTTTCACTTAG
1 TTTCTCTCACTTAG
8076026 TTTCTCTCACTTAG
1 TTTCTCTCACTTAG
8076040 TT
1 TT
8076042 GCACCTTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.07, T:0.57
Consensus pattern (14 bp):
TTTCTCTCACTTAG
Found at i:8076525 original size:6 final size:6
Alignment explanation
Indices: 8076517--8076556 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
8076507 TAAACTTGCA
* **
8076517 AAAAAA AAAAAC AAAAAC AAAAAC AAAAGG AAAAAC AAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAA
8076557 GGAAAAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:8076557 original size:12 final size:12
Alignment explanation
Indices: 8076523--8076562 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
8076513 TGCAAAAAAA
**
8076523 AAAAACAAAAAC
1 AAAAACAAAAGG
8076535 AAAAACAAAAGG
1 AAAAACAAAAGG
8076547 AAAAACAAAAGG
1 AAAAACAAAAGG
8076559 AAAA
1 AAAA
8076563 GAAAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAACAAAAGG
Found at i:8076562 original size:18 final size:17
Alignment explanation
Indices: 8076518--8076567 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
8076508 AAACTTGCAA
* *
8076518 AAAAAAAAAACAAAAAC
1 AAAAACAAAAGAAAAAC
8076535 AAAAACAAAAGGAAAAAC
1 AAAAACAAAA-GAAAAAC
**
8076553 AAAAGGAAAAGAAAA
1 AAAAACAAAAGAAAA
8076568 GAAAAGCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.82, C:0.08, G:0.10, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAGAAAAAC
Found at i:8078833 original size:6 final size:6
Alignment explanation
Indices: 8078822--8078846 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8078812 ATAAATTTAG
8078822 ATTAAA ATTAAA ATTAAA ATTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA A
8078847 GAAAATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATTAAA
Found at i:8080527 original size:374 final size:374
Alignment explanation
Indices: 8079838--8080584 Score: 1458
Period size: 374 Copynumber: 2.0 Consensus size: 374
8079828 TTCCTTATTT
8079838 TGTGTCGTCCTTTGATGCTGGCATGGCTGGTCTTGATTTAGGCACTGCTTCTCGCTATTTTCACC
1 TGTGTCGTCCTTTGATGCTGGCATGGCTGGTCTTGATTTAGGCACTGCTTCTCGCTATTTTCACC
8079903 AGCTTCACAGACCGGACCTTCACCTCCAACACCAACCTGAACCGGAAGAACAAGAAGCTTCCAAC
66 AGCTTCACAGACCGGACCTTCACCTCCAACACCAACCTGAACCGGAAGAACAAGAAGCTTCCAAC
8079968 AACCGTGTTGGTGGTCACTATGGGTCAGCTGACCATCACCAAGACGATGGTTCACGCCAAGCCCT
131 AACCGTGTTGGTGGTCACTATGGGTCAGCTGACCATCACCAAGACGATGGTTCACGCCAAGCCCT
8080033 GGATTTAGTCAACGCGGGCAACTCGGGTGCGGGTGACCTTGTTGCCCGTAGGCCCAGAGGTCGTC
196 GGATTTAGTCAACGCGGGCAACTCGGGTGCGGGTGACCTTGTTGCCCGTAGGCCCAGAGGTCGTC
8080098 CTCCAGGTTCCAAGAACAAACCCAAGCCTCCAGTCATCATCACAAGGGAGAGTGCAAACACGCTC
261 CTCCAGGTTCCAAGAACAAACCCAAGCCTCCAGTCATCATCACAAGGGAGAGTGCAAACACGCTC
8080163 CGAGCTCACATTCTTGAAGTTGGGAATGGCTGTGATGTGTTTGACTGTA
326 CGAGCTCACATTCTTGAAGTTGGGAATGGCTGTGATGTGTTTGACTGTA
*
8080212 TGTGTCGTCCTTTGATGCTGGCATGGCTGGTCTTGATTTAGGCACTGCTTCTCGCTATTTTCATC
1 TGTGTCGTCCTTTGATGCTGGCATGGCTGGTCTTGATTTAGGCACTGCTTCTCGCTATTTTCACC
* *
8080277 AGCTTCATAGACCGGACCTTCACCTCCAACACCAACCTGAACCGGAGGAACAAGAAGCTTCCAAC
66 AGCTTCACAGACCGGACCTTCACCTCCAACACCAACCTGAACCGGAAGAACAAGAAGCTTCCAAC
*
8080342 AACCGTGTTGGTGGTCACTATGGGTCAGCTGACCATCACCGAGACGATGGTTCACGCCAAGCCCT
131 AACCGTGTTGGTGGTCACTATGGGTCAGCTGACCATCACCAAGACGATGGTTCACGCCAAGCCCT
8080407 GGATTTAGTCAACGCGGGCAACTCGGGTGCGGGTGACCTTGTTGCCCGTAGGCCCAGAGGTCGTC
196 GGATTTAGTCAACGCGGGCAACTCGGGTGCGGGTGACCTTGTTGCCCGTAGGCCCAGAGGTCGTC
8080472 CTCCAGGTTCCAAGAACAAACCCAAGCCTCCAGTCATCATCACAAGGGAGAGTGCAAACACGCTC
261 CTCCAGGTTCCAAGAACAAACCCAAGCCTCCAGTCATCATCACAAGGGAGAGTGCAAACACGCTC
8080537 CGAGCTCACATTCTTGAAGTTGGGAATGGCTGTGATGTGTTTGACTGT
326 CGAGCTCACATTCTTGAAGTTGGGAATGGCTGTGATGTGTTTGACTGT
8080585 GTTGCCAACT
Statistics
Matches: 369, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
374 369 1.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (374 bp):
TGTGTCGTCCTTTGATGCTGGCATGGCTGGTCTTGATTTAGGCACTGCTTCTCGCTATTTTCACC
AGCTTCACAGACCGGACCTTCACCTCCAACACCAACCTGAACCGGAAGAACAAGAAGCTTCCAAC
AACCGTGTTGGTGGTCACTATGGGTCAGCTGACCATCACCAAGACGATGGTTCACGCCAAGCCCT
GGATTTAGTCAACGCGGGCAACTCGGGTGCGGGTGACCTTGTTGCCCGTAGGCCCAGAGGTCGTC
CTCCAGGTTCCAAGAACAAACCCAAGCCTCCAGTCATCATCACAAGGGAGAGTGCAAACACGCTC
CGAGCTCACATTCTTGAAGTTGGGAATGGCTGTGATGTGTTTGACTGTA
Found at i:8088078 original size:18 final size:18
Alignment explanation
Indices: 8088057--8088092 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8088047 TTGTTGGTTT
*
8088057 TGATGATGTTGTTGATGA
1 TGATGATGGTGTTGATGA
8088075 TGATGATGGTGTTGATGA
1 TGATGATGGTGTTGATGA
8088093 AACTGTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (18 bp):
TGATGATGGTGTTGATGA
Found at i:8093359 original size:29 final size:29
Alignment explanation
Indices: 8093323--8093381 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8093313 ACTCGTATTT
8093323 ATATTTGATAAAAGTGATTATTTTATTAA
1 ATATTTGATAAAAGTGATTATTTTATTAA
8093352 ATATTTGATAAAAGTGATTATTTTATTAA
1 ATATTTGATAAAAGTGATTATTTTATTAA
8093381 A
1 A
8093382 AAATAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.47
Consensus pattern (29 bp):
ATATTTGATAAAAGTGATTATTTTATTAA
Found at i:8095027 original size:25 final size:21
Alignment explanation
Indices: 8094958--8095022 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
8094948 CCTGATCAGT
** * *
8094958 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
8094979 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
8095000 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
8095021 AT
1 AT
8095023 CGATAAAGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:8103928 original size:107 final size:107
Alignment explanation
Indices: 8103742--8103950 Score: 393
Period size: 107 Copynumber: 2.0 Consensus size: 107
8103732 ACTGTAATTT
8103742 GATCTCATCTCGTAGACCCCGTAAAAATCTCTTACAACTATCAGCTTCAGTTGGAATAAACTCTG
1 GATCTCATCTCGTAGACCCCGTAAAAATCTCTTACAACTATCAGCTTCAGTTGGAATAAACTCTG
8103807 AGGCATATCTACTGAG-TCTCGAGAATTCCCTCTCATAGTCTC
66 AGGCATATCTACTGAGCT-TCGAGAATTCCCTCTCATAGTCTC
*
8103849 GATCTTATCTCGTAGACCCCGTAAAAATCTCTTACAACTATCAGCTTCAGTTGGAATAAACTCTG
1 GATCTCATCTCGTAGACCCCGTAAAAATCTCTTACAACTATCAGCTTCAGTTGGAATAAACTCTG
8103914 AGGCATATCTACTGAGCTTCGAGAATTCCCTCTCATA
66 AGGCATATCTACTGAGCTTCGAGAATTCCCTCTCATA
8103951 TTCTATTACT
Statistics
Matches: 100, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
107 99 0.99
108 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (107 bp):
GATCTCATCTCGTAGACCCCGTAAAAATCTCTTACAACTATCAGCTTCAGTTGGAATAAACTCTG
AGGCATATCTACTGAGCTTCGAGAATTCCCTCTCATAGTCTC
Found at i:8105796 original size:21 final size:21
Alignment explanation
Indices: 8105770--8105852 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
8105760 TGATCAGTAT
*
8105770 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
8105791 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* * *
8105812 ACGACACACGAGGTGCTTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
8105834 TACGACACATAAAGTGCCT
1 -ACGACACACAAAGTGCCT
8105853 GATCGATATA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 33 0.69
22 1 0.02
23 14 0.29
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:8105820 original size:23 final size:22
Alignment explanation
Indices: 8105768--8105842 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
8105758 CCTGATCAGT
** *
8105768 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
8105789 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
*
8105810 ATACGACACACGAGGTGCTTGAA
1 ATACGACACACGAGGTGCCTG-A
8105833 ATACGACACA
1 ATACGACACA
8105843 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 35 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:8108201 original size:20 final size:20
Alignment explanation
Indices: 8108169--8108206 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8108159 AAATTAATTT
8108169 AAACTAAAGGTATCGATAGC
1 AAACTAAAGGTATCGATAGC
8108189 AAACTTAAA-GTATCGATA
1 AAAC-TAAAGGTATCGATA
8108207 CTTCTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (20 bp):
AAACTAAAGGTATCGATAGC
Found at i:8110743 original size:12 final size:12
Alignment explanation
Indices: 8110728--8110768 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8110718 TGATAATATA
*
8110728 AATAACAACGAT
1 AATAACAACAAT
*
8110740 AATAACAATAAT
1 AATAACAACAAT
*
8110752 AATAACAATAAT
1 AATAACAACAAT
8110764 AATAA
1 AATAA
8110769 TAATGAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.66, C:0.10, G:0.02, T:0.22
Consensus pattern (12 bp):
AATAACAACAAT
Found at i:8110752 original size:3 final size:3
Alignment explanation
Indices: 8110738--8110772 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
8110728 AATAACAACG
* *
8110738 ATA ATA ACA ATA ATA ATA ACA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8110773 GAAGAATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:8110816 original size:17 final size:17
Alignment explanation
Indices: 8110796--8110846 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
8110786 TTTTGAAATT
*
8110796 ATAAAAAAAATAAGTAA
1 ATAAAAATAATAAGTAA
8110813 AT--AAATAAT--G-AA
1 ATAAAAATAATAAGTAA
8110825 ATAAAAATAATAAGTAA
1 ATAAAAATAATAAGTAA
8110842 ATAAA
1 ATAAA
8110847 CAAATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 10
0.72 0.03 0.26
Matches are distributed among these distances:
12 4 0.14
13 1 0.04
14 7 0.25
15 6 0.21
16 1 0.04
17 9 0.32
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.22
Consensus pattern (17 bp):
ATAAAAATAATAAGTAA
Found at i:8110830 original size:25 final size:25
Alignment explanation
Indices: 8110801--8110864 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
8110791 AAATTATAAA
**
8110801 AAAAATAAGTAAATAAATAATGAAAT
1 AAAAATAA-TAAATAAATAAACAAAT
*
8110827 AAAAATAATAAGTAAATAAACAAAT
1 AAAAATAATAAATAAATAAACAAAT
8110852 AAAAACTAATAAA
1 AAAAA-TAATAAA
8110865 GGTTTAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (25 bp):
AAAAATAATAAATAAATAAACAAAT
Found at i:8110960 original size:3 final size:3
Alignment explanation
Indices: 8110954--8111009 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
8110944 AAGAATAAGA
8110954 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
8111002 ATG ATG AT
1 ATG ATG AT
8111010 AGTTGAAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:8111973 original size:13 final size:13
Alignment explanation
Indices: 8111938--8111978 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
8111928 TTTAATCTTT
8111938 GCAAGTGGCGGTG
1 GCAAGTGGCGGTG
*
8111951 GCAAG-AGCGGTG
1 GCAAGTGGCGGTG
*
8111963 GCCAGTGGCGGTG
1 GCAAGTGGCGGTG
8111976 GCA
1 GCA
8111979 GGCTTTGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.17, C:0.20, G:0.51, T:0.12
Consensus pattern (13 bp):
GCAAGTGGCGGTG
Found at i:8113322 original size:10 final size:10
Alignment explanation
Indices: 8113309--8113393 Score: 55
Period size: 10 Copynumber: 7.9 Consensus size: 10
8113299 CTAATTTCCC
8113309 CTTTCTTTTT
1 CTTTCTTTTT
8113319 CTTTCTTTTTT
1 CTTTC-TTTTT
*
8113330 CTTTCTCTCTT
1 CTTTCT-TTTT
8113341 -TTTCGTTTCACTT
1 CTTTC-TTT---TT
* *
8113354 CTCTATTCTTT
1 CTTTCTT-TTT
8113365 CTTTCTTTTT
1 CTTTCTTTTT
* *
8113375 ATTTCTTTTA
1 CTTTCTTTTT
8113385 CTTTCTTTT
1 CTTTCTTTT
8113394 ATTTACTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
10 30 0.52
11 21 0.36
13 4 0.07
14 3 0.05
ACGTcount: A:0.05, C:0.22, G:0.01, T:0.72
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:8113388 original size:20 final size:20
Alignment explanation
Indices: 8113365--8113402 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8113355 TCTATTCTTT
8113365 CTTTCTTTTTATTT-CTTTTA
1 CTTTC-TTTTATTTACTTTTA
8113385 CTTTCTTTTATTTACTTT
1 CTTTCTTTTATTTACTTT
8113403 ATGTATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (20 bp):
CTTTCTTTTATTTACTTTTA
Found at i:8122263 original size:14 final size:14
Alignment explanation
Indices: 8122244--8122273 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8122234 GTTGCTTACG
8122244 TAGTTGTTCTCCTC
1 TAGTTGTTCTCCTC
8122258 TAGTTGTTCTCCTC
1 TAGTTGTTCTCCTC
8122272 TA
1 TA
8122274 TTTTGTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.27, G:0.13, T:0.50
Consensus pattern (14 bp):
TAGTTGTTCTCCTC
Found at i:8124929 original size:12 final size:14
Alignment explanation
Indices: 8124914--8124945 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8124904 GTGAGAGCAC
8124914 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
8124926 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
8124940 ATGTGT
1 ATGTGT
8124946 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:8125026 original size:50 final size:49
Alignment explanation
Indices: 8124969--8125102 Score: 196
Period size: 49 Copynumber: 2.7 Consensus size: 49
8124959 AGGTCACGTA
*
8124969 TGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATAGTTAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCGCATG
* ** *
8125019 TGTAGTACTAAGTGCAGGCTATTACGTGTACTGGATTGTTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATG
* *
8125068 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
8125103 CAGCTTCAGT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 39 0.53
50 35 0.47
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATG
Found at i:8125082 original size:49 final size:50
Alignment explanation
Indices: 8124913--8125102 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 50
8124903 TGTGAGAGCA
* * * *** * *
8124913 CATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCG
* * *
8124965 CGTATGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATAGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* ** *
8125015 CATGTGTAGTACTAAGTGCAGGCTATTACGTGTACTGGATTGTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* *
8125064 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
8125103 CAGCTTCAGT
Statistics
Matches: 115, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
49 39 0.34
50 44 0.38
52 32 0.28
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
Found at i:8125324 original size:16 final size:15
Alignment explanation
Indices: 8125303--8125332 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8125293 AAATAGAGTA
8125303 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
8125319 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
8125333 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:8130252 original size:32 final size:32
Alignment explanation
Indices: 8130211--8130274 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
8130201 AGCTCCTTTG
8130211 TCTCCTGTGTCAATATCTTGATCGGTTCTTCA
1 TCTCCTGTGTCAATATCTTGATCGGTTCTTCA
8130243 TCTCCTGTGTCAATATCTTGATCGGTTCTTCA
1 TCTCCTGTGTCAATATCTTGATCGGTTCTTCA
8130275 CTATAAGTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (32 bp):
TCTCCTGTGTCAATATCTTGATCGGTTCTTCA
Found at i:8130960 original size:9 final size:9
Alignment explanation
Indices: 8130946--8130986 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
8130936 TTTATACAAA
*
8130946 TAATTCGGT
1 TAATTCGGG
8130955 TAATTCGGG
1 TAATTCGGG
8130964 TAATTCGGG
1 TAATTCGGG
*
8130973 TAATTCGGT
1 TAATTCGGG
8130982 TAATT
1 TAATT
8130987 TTATACTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (9 bp):
TAATTCGGG
Found at i:8131779 original size:23 final size:23
Alignment explanation
Indices: 8131745--8131788 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
8131735 TGTACAGACA
8131745 TAGTACCGCTGTGAGCCTCGCGT
1 TAGTACCGCTGTGAGCCTCGCGT
*
8131768 TAGTACCTCTGTGAGCCTCGC
1 TAGTACCGCTGTGAGCCTCGC
8131789 TAGTATCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (23 bp):
TAGTACCGCTGTGAGCCTCGCGT
Found at i:8133101 original size:15 final size:15
Alignment explanation
Indices: 8133072--8133133 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
8133062 GTAGAAAGCC
* *
8133072 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
8133087 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
8133102 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
8133120 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
8133134 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:8133111 original size:16 final size:16
Alignment explanation
Indices: 8133090--8133140 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
8133080 TTTCTAGTAT
*
8133090 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
8133106 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
8133122 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
8133138 TTT
1 TTT
8133141 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:8134486 original size:13 final size:14
Alignment explanation
Indices: 8134453--8134486 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8134443 GCCCGGAGGC
*
8134453 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
8134467 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
8134481 TGAAAA
1 T-AAAA
8134487 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:8141439 original size:12 final size:12
Alignment explanation
Indices: 8141422--8141454 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
8141412 TGTTTTTACC
8141422 TAATTCCTTCAA
1 TAATTCCTTCAA
8141434 TAATTCCTTCAA
1 TAATTCCTTCAA
8141446 TAATTCCTT
1 TAATTCCTT
8141455 TTTTTCTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (12 bp):
TAATTCCTTCAA
Found at i:8149872 original size:13 final size:13
Alignment explanation
Indices: 8149854--8149890 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8149844 AGATAATTAG
8149854 CAAATCATACATA
1 CAAATCATACATA
8149867 CAAATCATACATA
1 CAAATCATACATA
*
8149880 TAAATTCATAC
1 CAAA-TCATAC
8149891 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:8153190 original size:13 final size:13
Alignment explanation
Indices: 8153172--8153208 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8153162 AGATAATTAG
8153172 CAAATCATACATA
1 CAAATCATACATA
8153185 CAAATCATACATA
1 CAAATCATACATA
*
8153198 TAAATTCATAC
1 CAAA-TCATAC
8153209 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:8156070 original size:47 final size:47
Alignment explanation
Indices: 8156017--8156286 Score: 373
Period size: 47 Copynumber: 5.7 Consensus size: 47
8156007 TTAGGATTCT
*
8156017 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
*
8156064 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * * *
8156111 ATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCA
* *
8156160 ACGTGATGAATGT--AAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * * *
8156205 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * *
8156252 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
8156287 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
45 34 0.17
47 127 0.65
49 34 0.17
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
Found at i:8156115 original size:94 final size:94
Alignment explanation
Indices: 8156017--8156286 Score: 418
Period size: 94 Copynumber: 2.9 Consensus size: 94
8156007 TTAGGATTCT
* * * * * *
8156017 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
8156082 TGTATATATGTGATAAGGCCTAATAGCCA
66 TGTATATATGTGATAAGGCCTAATAGCCA
8156111 ATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGT--A
1 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAA
* *
8156174 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATAGCCA
*
8156205 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
*
8156270 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
8156287 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
92 39 0.24
94 89 0.55
96 34 0.21
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCA
Found at i:8156193 original size:141 final size:140
Alignment explanation
Indices: 8156019--8156282 Score: 431
Period size: 141 Copynumber: 1.9 Consensus size: 140
8156009 AGGATTCTAT
8156019 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGT-AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
8156084 TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGACAGGG
65 TATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGACAGGG
8156149 CCGAGTGGCCAAC
128 CCGAGTGGCCAAC
8156162 GTGATGAATGT-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 GTGATGAATGTAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * *
8156226 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGA
8156283 TAAGTCCCGA
Statistics
Matches: 114, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
139 6 0.05
140 1 0.01
141 96 0.84
143 11 0.10
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (140 bp):
GTGATGAATGTAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGACAGGGCCG
AGTGGCCAAC
Found at i:8156461 original size:37 final size:37
Alignment explanation
Indices: 8156405--8156483 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8156395 CCGAGCTCTA
* * *
8156405 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
8156442 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
8156479 AAGAC
1 AAGAC
8156484 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:8158312 original size:21 final size:22
Alignment explanation
Indices: 8158266--8158306 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8158256 TAGTTATCTA
*
8158266 ATCAATTCTAATCAATGATTCT
1 ATCAATTCTAATCAATAATTCT
*
8158288 ATCAATT-TAATCCATAATT
1 ATCAATTCTAATCAATAATT
8158307 TCATCATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
ATCAATTCTAATCAATAATTCT
Found at i:8158571 original size:16 final size:16
Alignment explanation
Indices: 8158550--8158580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8158540 TTTCTTTTGT
*
8158550 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
8158566 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
8158581 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:8166034 original size:9 final size:9
Alignment explanation
Indices: 8166020--8166052 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8166010 TAAAAGAAGG
8166020 AAAAAAA-A
1 AAAAAAAGA
*
8166028 AAGAAAAGA
1 AAAAAAAGA
8166037 AAAAAAAGA
1 AAAAAAAGA
8166046 AAAAAAA
1 AAAAAAA
8166053 AGCTAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:8166039 original size:14 final size:13
Alignment explanation
Indices: 8166020--8166053 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
8166010 TAAAAGAAGG
8166020 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
8166033 AAGAAAAAAAAGAA
1 AA-AAAAAAAAGAA
8166047 AAAAAAA
1 AAAAAAA
8166054 GCTAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:8167847 original size:12 final size:12
Alignment explanation
Indices: 8167830--8167856 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8167820 AATGATTGTT
8167830 CAACTCTAAAAA
1 CAACTCTAAAAA
8167842 CAACTCTAAAAA
1 CAACTCTAAAAA
8167854 CAA
1 CAA
8167857 AAAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (12 bp):
CAACTCTAAAAA
Found at i:8169579 original size:2 final size:2
Alignment explanation
Indices: 8169572--8169619 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
8169562 ATATGAAATG
*
8169572 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8169614 GA GA GA
1 GA GA GA
8169620 AGATTAAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8172849 original size:58 final size:58
Alignment explanation
Indices: 8172759--8172871 Score: 156
Period size: 58 Copynumber: 1.9 Consensus size: 58
8172749 TATTAAGGCC
* *
8172759 TGAAATTTTTTTGTCTAAGTTAGGTTCTGAACTTGACAATTATTCTCACATTGGGGTT
1 TGAAATTTTTTTGTCTAAATTAGGTTCTGAACTTGACAAATATTCTCACATTGGGGTT
* * * *
8172817 TGAAATTTTTTTTTCTAAATTAGG-TCTTGAACTTGGCAAATGTTTTCACATTGGG
1 TGAAATTTTTTTGTCTAAATTAGGTTC-TGAACTTGACAAATATTCTCACATTGGG
8172872 ACTTCAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
57 2 0.04
58 46 0.96
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.45
Consensus pattern (58 bp):
TGAAATTTTTTTGTCTAAATTAGGTTCTGAACTTGACAAATATTCTCACATTGGGGTT
Found at i:8172884 original size:58 final size:58
Alignment explanation
Indices: 8172761--8172886 Score: 146
Period size: 58 Copynumber: 2.2 Consensus size: 58
8172751 TTAAGGCCTG
* * ** *
8172761 AAATTTTTTTGTCTAAGTTAGGTTCTGAACTTGACAATTATTCTCACATTGGGGTTTG
1 AAATTTTTTTGTCTAAATTAGGTTCTGAACTTGACAAATATTCTCACATTGGGACTTC
* * * *
8172819 AAATTTTTTTTTCTAAATTAGG-TCTTGAACTTGGCAAATGTTTTCACATTGGGACTTC
1 AAATTTTTTTGTCTAAATTAGGTTC-TGAACTTGACAAATATTCTCACATTGGGACTTC
*
8172877 AATTTTTTTT
1 AAATTTTTTT
8172887 ATCCAAGTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 2 0.04
58 55 0.96
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.48
Consensus pattern (58 bp):
AAATTTTTTTGTCTAAATTAGGTTCTGAACTTGACAAATATTCTCACATTGGGACTTC
Found at i:8174050 original size:24 final size:24
Alignment explanation
Indices: 8174001--8174052 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8173991 GTTTATATTA
* *
8174001 AATATCTCATATTTAATTTAATTT
1 AATATCTCATATTTAATGTAAATT
*
8174025 AATATTTCATA-TTAATAGTAAATT
1 AATATCTCATATTTAAT-GTAAATT
8174049 AATA
1 AATA
8174053 AAATACTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
AATATCTCATATTTAATGTAAATT
Found at i:8174080 original size:31 final size:30
Alignment explanation
Indices: 8174038--8174142 Score: 113
Period size: 31 Copynumber: 3.4 Consensus size: 30
8174028 ATTTCATATT
*
8174038 AATAGTAAATTAATAAAATACTATATAGATA
1 AATATTAAATTAATAAAATA-TATATAGATA
** * * *
8174069 AATATTAAATTAAATTCAATAT-TTTATATT
1 AATATTAAATT-AATAAAATATATATAGATA
*
8174099 AATATTAAATTAATAAAATATTATCTAGATA
1 AATATTAAATTAATAAAATA-TATATAGATA
8174130 AATATTAAATTAA
1 AATATTAAATTAA
8174143 ATTCAATATA
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
29 7 0.12
30 17 0.28
31 29 0.48
32 7 0.12
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATATATAGATA
Found at i:8174098 original size:61 final size:61
Alignment explanation
Indices: 8174009--8174160 Score: 232
Period size: 61 Copynumber: 2.5 Consensus size: 61
8173999 TAAATATCTC
* * *
8174009 ATATTTAATTTAATTTAATATTTCATATTAATAGTAAATTAATAAAATACTATATAGATAA
1 ATATTAAATTAAATTCAATATTTCATATTAATAGTAAATTAATAAAATACTATATAGATAA
* * * *
8174070 ATATTAAATTAAATTCAATATTTTATATTAATATTAAATTAATAAAATATTATCTAGATAA
1 ATATTAAATTAAATTCAATATTTCATATTAATAGTAAATTAATAAAATACTATATAGATAA
*
8174131 ATATTAAATTAAATTCAATATATCATATTA
1 ATATTAAATTAAATTCAATATTTCATATTA
8174161 GTACCTAAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 82 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (61 bp):
ATATTAAATTAAATTCAATATTTCATATTAATAGTAAATTAATAAAATACTATATAGATAA
Found at i:8174120 original size:16 final size:15
Alignment explanation
Indices: 8174038--8174142 Score: 51
Period size: 16 Copynumber: 6.9 Consensus size: 15
8174028 ATTTCATATT
*
8174038 AATAGTAAATTAATAA
1 AATATTAAATTAAT-A
* *
8174054 AATACTATA-TAGATA
1 AATATTAAATTA-ATA
*
8174069 AATATTAAATTAAATTC
1 AATATTAAATT-AA-TA
*
8174086 AATATT---TTATATT
1 AATATTAAATTA-ATA
8174099 AATATTAAATTAATAA
1 AATATTAAATTAAT-A
8174115 AATATT--ATCTAGATA
1 AATATTAAAT-TA-ATA
8174130 AATATTAAATTAA
1 AATATTAAATTAA
8174143 ATTCAATATA
Statistics
Matches: 69, Mismatches: 7, Indels: 27
0.67 0.07 0.26
Matches are distributed among these distances:
13 8 0.12
14 5 0.07
15 22 0.32
16 24 0.35
17 10 0.14
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (15 bp):
AATATTAAATTAATA
Found at i:8176453 original size:19 final size:19
Alignment explanation
Indices: 8176403--8176453 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
8176393 TTTTGTATTT
* *
8176403 TATTTTTGGGAATTTTATA
1 TATTTTTGAGATTTTTATA
**
8176422 TATTTTTCTGATTTTTA-A
1 TATTTTTGAGATTTTTATA
8176440 TAATTTTTGAGATT
1 T-ATTTTTGAGATT
8176454 CTTTGAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 2 0.08
19 24 0.92
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.61
Consensus pattern (19 bp):
TATTTTTGAGATTTTTATA
Found at i:8181165 original size:24 final size:24
Alignment explanation
Indices: 8181133--8181178 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8181123 TCTTCTTTTT
* *
8181133 TATTTTTTAATATTATATATAATA
1 TATTTTTTAATAATATAAATAATA
8181157 TATTTTTTAATAATATAAATAA
1 TATTTTTTAATAATATAAATAA
8181179 ATCATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTTTTTAATAATATAAATAATA
Found at i:8181768 original size:14 final size:14
Alignment explanation
Indices: 8181749--8181782 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8181739 TTTAATTATG
8181749 TAAAATTAT-AAAAT
1 TAAAATT-TGAAAAT
8181763 TAAAATTTGAAAAT
1 TAAAATTTGAAAAT
8181777 TAAAAT
1 TAAAAT
8181783 AAAGTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
TAAAATTTGAAAAT
Found at i:8182163 original size:22 final size:21
Alignment explanation
Indices: 8182138--8182180 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
8182128 TGAATTAATT
8182138 AATT-ATATTATAAAAATATAAA
1 AATTCATATT-TAAAAAT-TAAA
8182160 AATTCATATTTAAAAATTAAA
1 AATTCATATTTAAAAATTAAA
8182181 GTATAATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTCATATTTAAAAATTAAA
Found at i:8187469 original size:15 final size:15
Alignment explanation
Indices: 8187449--8187481 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8187439 GTTGTAACTT
*
8187449 TAATAATAATGATAA
1 TAATAATAAAGATAA
8187464 TAATAATAAAGATAA
1 TAATAATAAAGATAA
8187479 TAA
1 TAA
8187482 AATGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
TAATAATAAAGATAA
Found at i:8188715 original size:43 final size:43
Alignment explanation
Indices: 8188651--8188736 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
8188641 TATGTAATTG
* *
8188651 ATATTAAAATGGAAAAGATGAGAAAAGAATGTGAGATGAGAAA
1 ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
* * * *
8188694 ATATTGAAATGGAAAATATGAGAAATGATTATGAGAAGAGAAA
1 ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
8188737 TGAGATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (43 bp):
ATATTAAAATGGAAAAGATGAGAAAAGAATATGAGAAGAGAAA
Found at i:8188773 original size:7 final size:7
Alignment explanation
Indices: 8188709--8188775 Score: 50
Period size: 7 Copynumber: 9.9 Consensus size: 7
8188699 GAAATGGAAA
8188709 ATATGAG
1 ATATGAG
*
8188716 AAATGA-
1 ATATGAG
*
8188722 TTATGAG
1 ATATGAG
8188729 A-A-GAG
1 ATATGAG
*
8188734 AAATGAG
1 ATATGAG
*
8188741 ATATGAA
1 ATATGAG
8188748 ATTATGAG
1 A-TATGAG
*
8188756 AAATGAG
1 ATATGAG
*
8188763 ATATGAT
1 ATATGAG
8188770 ATATGA
1 ATATGA
8188776 AATGATGAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
5 4 0.09
6 6 0.13
7 30 0.65
8 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (7 bp):
ATATGAG
Found at i:8188773 original size:29 final size:27
Alignment explanation
Indices: 8188721--8188783 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 27
8188711 ATGAGAAATG
8188721 ATTATGAGAAGAGAAATGAGATATGAA
1 ATTATGAGAAGAGAAATGAGATATGAA
* *
8188748 ATTATGAGAAATGAGATATGATATATGAA
1 ATTATGAG-AA-GAGAAATGAGATATGAA
*
8188777 ATGATGA
1 ATTATGA
8188784 ATTGAGATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 8 0.26
28 2 0.06
29 21 0.68
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (27 bp):
ATTATGAGAAGAGAAATGAGATATGAA
Found at i:8190455 original size:16 final size:16
Alignment explanation
Indices: 8190436--8190469 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8190426 ATAAATTTAA
8190436 TTAAAATAATAATAAT
1 TTAAAATAATAATAAT
**
8190452 TTAAAATTTTAATAAT
1 TTAAAATAATAATAAT
8190468 TT
1 TT
8190470 TTAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATAATAATAAT
Found at i:8190466 original size:19 final size:19
Alignment explanation
Indices: 8190442--8190480 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8190432 TTAATTAAAA
8190442 TAATAATAATTTAAA-ATTT
1 TAATAAT-ATTTAAATATTT
*
8190461 TAATAATTTTTAAATATTT
1 TAATAATATTTAAATATTT
8190480 T
1 T
8190481 CTAACAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATAATATTTAAATATTT
Found at i:8190733 original size:3 final size:3
Alignment explanation
Indices: 8190725--8190755 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8190715 ACAAAATGTG
8190725 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8190756 CCCTCAAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8195119 original size:10 final size:10
Alignment explanation
Indices: 8195104--8195169 Score: 80
Period size: 10 Copynumber: 6.4 Consensus size: 10
8195094 TCCTCTTATC
8195104 CAAATTCTCT
1 CAAATTCTCT
8195114 CAAATTCTCT
1 CAAATTCTCT
8195124 CAAATTCT-T
1 CAAATTCTCT
8195133 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
8195146 CATATTCTCT
1 CAAATTCTCT
*
8195156 CAAATTTTCT
1 CAAATTCTCT
8195166 CAAA
1 CAAA
8195170 GCTCTCTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
9 1 0.02
10 39 0.80
12 8 0.16
13 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:8195142 original size:32 final size:32
Alignment explanation
Indices: 8195105--8195169 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 32
8195095 CCTCTTATCC
8195105 AAATTCTCTCAAATTCTCTCAAATTCTTC-CAA
1 AAATTCTCTCAAATTCTCTCAAATT-TTCTCAA
*
8195137 AAATTCTCTCATATTCTCTCAAATTTTCTCAA
1 AAATTCTCTCAAATTCTCTCAAATTTTCTCAA
8195169 A
1 A
8195170 GCTCTCTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 3 0.10
32 28 0.90
ACGTcount: A:0.34, C:0.26, G:0.00, T:0.40
Consensus pattern (32 bp):
AAATTCTCTCAAATTCTCTCAAATTTTCTCAA
Found at i:8195159 original size:22 final size:22
Alignment explanation
Indices: 8195104--8195159 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
8195094 TCCTCTTATC
8195104 CAAATTCTCTC--AAATTCTCT
1 CAAATTCTCTCAAAAATTCTCT
8195124 CAAATTCT-TCCAAAAATTCTCT
1 CAAATTCTCT-CAAAAATTCTCT
*
8195146 CATATTCTCTCAAA
1 CAAATTCTCTCAAA
8195160 TTTTCTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 1 0.03
20 9 0.29
22 20 0.65
23 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.38
Consensus pattern (22 bp):
CAAATTCTCTCAAAAATTCTCT
Found at i:8195370 original size:48 final size:49
Alignment explanation
Indices: 8195318--8195416 Score: 146
Period size: 49 Copynumber: 2.0 Consensus size: 49
8195308 AGTGATAATT
** *
8195318 TTAATATTTCAATAGTATTTAATA-TTTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTTAATTTATGCAAATTTAA
* *
8195366 TTAATTTTTCAATACAATTTAATATTTTTTTTCATTTATGCAAATTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTTAATTTATGCAAATTTAA
8195415 TT
1 TT
8195417 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 21 0.47
49 24 0.53
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (49 bp):
TTAATATTTCAATACAATTTAATATTTTTTTTAATTTATGCAAATTTAA
Found at i:8202123 original size:46 final size:46
Alignment explanation
Indices: 8202071--8202390 Score: 543
Period size: 46 Copynumber: 7.0 Consensus size: 46
8202061 AGTGTGCTCT
8202071 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8202117 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8202163 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8202209 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8202255 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
8202301 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
8202347 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8202391 TCATGTCAAA
Statistics
Matches: 264, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
45 1 0.00
46 263 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8204686 original size:126 final size:125
Alignment explanation
Indices: 8204455--8204843 Score: 465
Period size: 126 Copynumber: 3.1 Consensus size: 125
8204445 AATAGGAACT
* * * *
8204455 ACTGTAGAAAAAGAGTGTCCACGTGAGAGTTTTTCTCAGTAATTTTGCTGAAAGTGCATACTGCA
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTT-TCAGTAATTTTGCTGACAGTGCATCCTGCT
* ** * *
8204520 TAAAGCGTTTTTGACACTATTTGTTCAGAAAGGTCATCTCACAATTATTTTTTCAGATACC
65 TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
** * * *
8204581 ACTGTATCAAAAGAGTGTCCACGTGAGAGCTTGTTTCAGTACTTTTGTTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTT-TTTCAGTAATTTTGCTGACAGTGCATCCTGCT
* * * *
8204646 TAAAGCATTTTTTACACTATTTTTTCAGAAACTTCTTCTCAAAATTATTTTCTCAGATACC
65 TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
* * * * * *
8204707 ACTGTAGAAAAAAAGCGTCCACATGGGAGCAATTTTCAGTAATTTTGCTGGCAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGTGTCCACGTGAGAGC-TTTTTCAGTAATTTTGCTGACAGTGCATCCTGCT
* * * * * *
8204772 TGAAGCGTTTTGGATACTATTTCTTCAGAAACTTCTTCTTAAAATT-TTTTTCCAGATACT
65 TAAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
*
8204832 ACTGAAGAAAAA
1 ACTGTAGAAAAA
8204844 AAACCAAATA
Statistics
Matches: 222, Mismatches: 39, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
125 22 0.10
126 197 0.89
127 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (125 bp):
ACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTT
AAAGCGTTTTTGACACTATTTCTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATACC
Found at i:8205640 original size:20 final size:20
Alignment explanation
Indices: 8205603--8205640 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8205593 TGATGGGGAG
*
8205603 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
8205623 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
8205641 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:8208035 original size:12 final size:12
Alignment explanation
Indices: 8208017--8208059 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
8208007 CTAAACTAAA
8208017 ATTTAATTAATT
1 ATTTAATTAATT
*
8208029 TTTTAATTAA-T
1 ATTTAATTAATT
8208040 ATTTAATTTAATT
1 ATTTAA-TTAATT
*
8208053 AATTAAT
1 ATTTAAT
8208060 CTTACACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 6 0.23
12 14 0.54
13 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTTAATTAATT
Found at i:8208080 original size:26 final size:26
Alignment explanation
Indices: 8208044--8208110 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
8208034 ATTAATATTT
8208044 AATTTAATTAATTAATCTTACACCCC
1 AATTTAATTAATTAATCTTACACCCC
8208070 AATTTAATTAATTAATCTTACACCCC
1 AATTTAATTAATTAATCTTACACCCC
8208096 AATTTAATTAATTAA
1 AATTTAATTAATTAA
8208111 ACCCTTACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTTAATTAATTAATCTTACACCCC
Found at i:8208616 original size:27 final size:27
Alignment explanation
Indices: 8208586--8208639 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
8208576 ACTAAAATAA
*
8208586 AACCAAAGACATAATTGGGTGAGTATT
1 AACCAAAGACATAATTGGGCGAGTATT
*
8208613 AACCAAAGGCATAATTGGGCGAGTATT
1 AACCAAAGACATAATTGGGCGAGTATT
8208640 CTTATAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (27 bp):
AACCAAAGACATAATTGGGCGAGTATT
Found at i:8219258 original size:21 final size:23
Alignment explanation
Indices: 8219225--8219272 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
8219215 TAATTTAATT
8219225 GATTACTTGTTATTTTTATTAAA
1 GATTACTTGTTATTTTTATTAAA
* *
8219248 GATTA-TT-TTATTTTTTTTTAA
1 GATTACTTGTTATTTTTATTAAA
8219269 GATT
1 GATT
8219273 GTTAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.62
Consensus pattern (23 bp):
GATTACTTGTTATTTTTATTAAA
Found at i:8222785 original size:38 final size:37
Alignment explanation
Indices: 8222740--8222861 Score: 110
Period size: 38 Copynumber: 3.4 Consensus size: 37
8222730 TTTTGAGGTG
8222740 AAAATATTTAAATACTTTTATTTATATTAATTAT-TTAA
1 AAAATATTTAAATA-TTTTATTTATATTAATTATATT-A
* * * *
8222778 AAAATATTTAAAAATTTAATTATATATCATTTATATTA
1 AAAATATTTAAATATTTTATT-TATATTAATTATATTA
* * *
8222816 AAATTATTAAAATATTTTATGT-T-TT-ATTATATT-
1 AAAATATTTAAATATTTTATTTATATTAATTATATTA
*
8222849 AAATTATTTAAAT
1 AAAATATTTAAAT
8222862 GTTACTTACA
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
33 12 0.17
34 7 0.10
35 1 0.01
36 1 0.01
37 7 0.10
38 40 0.57
39 2 0.03
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.52
Consensus pattern (37 bp):
AAAATATTTAAATATTTTATTTATATTAATTATATTA
Found at i:8228528 original size:113 final size:113
Alignment explanation
Indices: 8228326--8228531 Score: 351
Period size: 113 Copynumber: 1.8 Consensus size: 113
8228316 TTGGATTTTA
*
8228326 ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGTT
1 ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGCT
*
8228391 CATTGCTGTGTGTAAATTATCCAAATTGAGGTGATTCTTGGCGCAGTT
66 CATTGCTGTGTGTAAATTAACCAAATTGAGGTGATTCTTGGCGCAGTT
* * *
8228439 ATTTACTCTCTTTAGCA-GTGATTCTCCTGCAGTTATTTTTATTTTCTGAAGTGTCAATCATTGC
1 ATTTACTCTCTTTAG-AGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGC
8228503 TCATTGCTGTGTGTAAATTAACCAAATTG
65 TCATTGCTGTGTGTAAATTAACCAAATTG
8228532 GGGAGAAGTC
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 86 0.99
114 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (113 bp):
ATTTACTCTCTTTAGAGGTGATTCTCCTGCAGTTATTGTTATTTTCTGAAGTGACAATCATCGCT
CATTGCTGTGTGTAAATTAACCAAATTGAGGTGATTCTTGGCGCAGTT
Found at i:8238382 original size:18 final size:18
Alignment explanation
Indices: 8238359--8238416 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
8238349 CCAAGTATGA
8238359 TTATAATTTCTTATATAC
1 TTATAATTTCTTATATAC
*
8238377 TTATAA----TTAAATGA-
1 TTATAATTTCTTATAT-AC
8238391 TTATAATTTCTTATATAC
1 TTATAATTTCTTATATAC
8238409 TTATAATT
1 TTATAATT
8238417 AAAACACTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 11 0.34
15 1 0.03
17 1 0.03
18 19 0.59
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (18 bp):
TTATAATTTCTTATATAC
Found at i:8238396 original size:32 final size:32
Alignment explanation
Indices: 8238355--8238419 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
8238345 GGGTCCAAGT
8238355 ATGATTATAATTTCTTATATACTTATAATTAA
1 ATGATTATAATTTCTTATATACTTATAATTAA
8238387 ATGATTATAATTTCTTATATACTTATAATTAA
1 ATGATTATAATTTCTTATATACTTATAATTAA
8238419 A
1 A
8238420 ACACTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (32 bp):
ATGATTATAATTTCTTATATACTTATAATTAA
Found at i:8243187 original size:9 final size:9
Alignment explanation
Indices: 8243173--8243197 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8243163 GTATGTTGCA
8243173 GCCACAATT
1 GCCACAATT
8243182 GCCACAATT
1 GCCACAATT
8243191 GCCACAA
1 GCCACAA
8243198 ATGACCATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.12, T:0.16
Consensus pattern (9 bp):
GCCACAATT
Found at i:8246831 original size:37 final size:37
Alignment explanation
Indices: 8246774--8246925 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
8246764 TATGATCACT
*
8246774 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
8246809 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
8246846 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
8246891 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
8246926 GAAGCTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 54 0.54
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:8246909 original size:46 final size:46
Alignment explanation
Indices: 8246842--8247110 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8246832 TAAGTGTAGC
* **
8246842 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8246888 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8246934 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8246986 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8247032 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8247084 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8247111 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8246961 original size:52 final size:52
Alignment explanation
Indices: 8246885--8247104 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8246875 TAGCTAAAGC
* *
8246885 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8246938 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8246990 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8247036 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8247088 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8247105 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8247007 original size:98 final size:98
Alignment explanation
Indices: 8246842--8247110 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8246832 TAAGTGTAGC
* * *
8246842 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8246907 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8246941 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8247006 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8247039 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8247104 GATCAGA
66 GATCAGA
8247111 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8250291 original size:49 final size:49
Alignment explanation
Indices: 8250236--8250381 Score: 229
Period size: 49 Copynumber: 3.0 Consensus size: 49
8250226 TTCGTTTTCT
* *
8250236 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
* *
8250285 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
* *
8250334 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-AATCACAT
8250382 GTTCACATGT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 82 0.93
50 6 0.07
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACAAATCACATAC
Found at i:8251695 original size:37 final size:37
Alignment explanation
Indices: 8251634--8251779 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
8251624 TACGTATGAT
* *
8251634 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8251669 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8251706 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8251743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8251780 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8251796 original size:46 final size:46
Alignment explanation
Indices: 8251743--8252011 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8251733 TAAGTGTAGC
* **
8251743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8251789 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8251835 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8251887 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8251933 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8251985 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8252012 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8251862 original size:52 final size:52
Alignment explanation
Indices: 8251786--8252005 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8251776 TAGCTAAAGC
* *
8251786 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8251839 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8251891 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8251937 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8251989 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8252006 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8251908 original size:98 final size:98
Alignment explanation
Indices: 8251743--8252011 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8251733 TAAGTGTAGC
* * *
8251743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8251808 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8251842 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8251907 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8251940 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8252005 GATCAGA
66 GATCAGA
8252012 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8254475 original size:21 final size:20
Alignment explanation
Indices: 8254428--8254477 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
8254418 TTGGCTTTTT
8254428 TTTTATTTTTATCCTTATTA
1 TTTTATTTTTATCCTTATTA
*
8254448 TTGTTATTTTTTTCCATTATT-
1 TT-TTATTTTTATCC-TTATTA
8254469 TATTTATTT
1 T-TTTATTT
8254478 ATTTATTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.08
21 18 0.69
22 6 0.23
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTTATTTTTATCCTTATTA
Found at i:8254527 original size:3 final size:3
Alignment explanation
Indices: 8254512--8254602 Score: 112
Period size: 3 Copynumber: 30.0 Consensus size: 3
8254502 AAAAATTTAG
*
8254512 ATT ATT CATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
8254558 ACC ATT ATT ATT ATT ATT ATT ATC ATT -TT CATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
8254603 GTTTATGCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
2 2 0.03
3 71 0.92
4 4 0.05
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:8254837 original size:14 final size:14
Alignment explanation
Indices: 8254818--8254864 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
8254808 CCCAAATTAG
8254818 TAAAAATAAAATTT
1 TAAAAATAAAATTT
8254832 TAAAAAT--AA---
1 TAAAAATAAAATTT
8254841 TAAAAATAAAATTT
1 TAAAAATAAAATTT
8254855 TAAAAATAAA
1 TAAAAATAAA
8254865 GGCAATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
9 7 0.25
11 2 0.07
12 2 0.07
14 17 0.61
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAATAAAATTT
Found at i:8254871 original size:23 final size:23
Alignment explanation
Indices: 8254818--8254863 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8254808 CCCAAATTAG
8254818 TAAAAATAAAATTTTAAAAATAA
1 TAAAAATAAAATTTTAAAAATAA
8254841 TAAAAATAAAATTTTAAAAATAA
1 TAAAAATAAAATTTTAAAAATAA
8254864 AGGCAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAATAAAATTTTAAAAATAA
Found at i:8257859 original size:51 final size:51
Alignment explanation
Indices: 8257793--8257902 Score: 175
Period size: 51 Copynumber: 2.2 Consensus size: 51
8257783 ACTTCTGATC
* * *
8257793 AGTGACAAGTTATAAGTGGTAGCTTTAGCTACACTTATTTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
8257844 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
8257895 AGTGATAA
1 AGTGATAA
8257903 ATGTGATCAG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:8261462 original size:51 final size:51
Alignment explanation
Indices: 8261397--8261508 Score: 179
Period size: 51 Copynumber: 2.2 Consensus size: 51
8261387 AACCAAGTTA
* * *
8261397 TCCGGATGAGATATGAGGCTCTTGTGGAAGCTAGAGCAACAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTGGAAGCTAGAACAACAAAGTAATAAT
*
8261448 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAACAACAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTGGAAGCTAGAACAACAAAGTAATAAT
*
8261499 TCTGGATGAA
1 TCCGGATGAA
8261509 GTATAAAGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTGGAAGCTAGAACAACAAAGTAATAAT
Found at i:8262400 original size:46 final size:46
Alignment explanation
Indices: 8262348--8262560 Score: 306
Period size: 46 Copynumber: 4.6 Consensus size: 46
8262338 GCTTTCTGAA
*
8262348 ATGAAATGTATAAGACCATGGTTGAAAGATCCCATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
8262394 ATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
8262440 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
8262486 ATGAAATG-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
8262532 A-GAAAATG-AGTAAGACCATAGTTGAAAGA
1 ATG-AAATGTA-TAAGACCATGGTTGAAAGA
8262561 CACTATGACA
Statistics
Matches: 153, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 152 0.99
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:8262465 original size:21 final size:21
Alignment explanation
Indices: 8262395--8262466 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
8262385 CAACATGATA
*
8262395 TGAAATGTGTAAGACCATGGT
1 TGAAATATGTAAGACCATGGT
* ** * *
8262416 TGAAAGATACAATGGCAACATGAT
1 TGAAATATGTAA--G-ACCATGGT
8262440 ATGAAATATGTAAGACCATGGT
1 -TGAAATATGTAAGACCATGGT
8262462 TGAAA
1 TGAAA
8262467 GATACCATGG
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 13 0.36
22 6 0.17
23 2 0.06
24 6 0.17
25 9 0.25
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAAATATGTAAGACCATGGT
Found at i:8265234 original size:17 final size:16
Alignment explanation
Indices: 8265206--8265249 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
8265196 TTAGTATAGG
8265206 TTTTCATTTTTCTCTTC
1 TTTTC-TTTTTCTCTTC
*
8265223 TCTTTCTTTTTCTTTTC
1 T-TTTCTTTTTCTCTTC
8265240 TTTTCTTTTT
1 TTTTCTTTTT
8265250 GGTGTAGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 9 0.36
17 12 0.48
18 4 0.16
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTTCTCTTC
Found at i:8269314 original size:200 final size:201
Alignment explanation
Indices: 8268971--8269365 Score: 729
Period size: 200 Copynumber: 2.0 Consensus size: 201
8268961 TTTGCCCAGA
*
8268971 TCAGATCCAGGGCAGATTCTACTTCCTCCTCCAAATGGAATAAAATTCTTTCCTTTCAATCCAGG
1 TCAGATCCAGGGCAGATTCTACTTCCTCCTCCAAAGGGAATAAAATTCTTTCCTTTCAATCCAGG
*
8269036 GTTCTGCATTTAGGTCAAACAGACAGTACTCAATTAACATAATTTGTATGCCTTTCATTCCTTTA
66 GTTCTGCATTCAGGTCAAACAGACAGTACTCAATTAACATAATTTGTATGCCTTTCATTCCTTTA
8269101 TCAGTTTAGTA-TTTTTTTTAAATTATTATTATTGTTGATTCTACTGACCTCCCATCTTGAAGGA
131 TCAGTTTAGTATTTTTTTTTAAATTATTATTATTGTTGATTCTACTGACCTCCCATCTTGAAGGA
8269165 ATTAGG
196 ATTAGG
*
8269171 TCAGATCCAGGGCAGATTCTACTTCCTCCTCCAAAGGGAATGAAATTCTTTCCTTTCAATCCAGG
1 TCAGATCCAGGGCAGATTCTACTTCCTCCTCCAAAGGGAATAAAATTCTTTCCTTTCAATCCAGG
* * *
8269236 GTTCTGCATTCAGGTCAAACCGACAGTACTTAATTAACATAATTTGTGTGCCTTTCATTCCTTTA
66 GTTCTGCATTCAGGTCAAACAGACAGTACTCAATTAACATAATTTGTATGCCTTTCATTCCTTTA
8269301 TCAGTTTAGTATTTTTTTTTAAATTATTATTATTGTTGATTCTACTGACCTCCCATCTTGAAGGA
131 TCAGTTTAGTATTTTTTTTTAAATTATTATTATTGTTGATTCTACTGACCTCCCATCTTGAAGGA
8269366 CTGAACTCTT
Statistics
Matches: 188, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
200 135 0.72
201 53 0.28
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (201 bp):
TCAGATCCAGGGCAGATTCTACTTCCTCCTCCAAAGGGAATAAAATTCTTTCCTTTCAATCCAGG
GTTCTGCATTCAGGTCAAACAGACAGTACTCAATTAACATAATTTGTATGCCTTTCATTCCTTTA
TCAGTTTAGTATTTTTTTTTAAATTATTATTATTGTTGATTCTACTGACCTCCCATCTTGAAGGA
ATTAGG
Found at i:8271947 original size:23 final size:23
Alignment explanation
Indices: 8271917--8271960 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
8271907 TATAAGTAGA
8271917 TTATTTTATATTTAAATAATATC
1 TTATTTTATATTTAAATAATATC
8271940 TTATTTTATATTTAAATAATA
1 TTATTTTATATTTAAATAATA
8271961 AATAACAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTTTATATTTAAATAATATC
Found at i:8273898 original size:10 final size:10
Alignment explanation
Indices: 8273883--8273918 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8273873 TATTTATGGG
8273883 ACTCTCTCAC
1 ACTCTCTCAC
*
8273893 ACTCTCTCTC
1 ACTCTCTCAC
8273903 ACTCTCTCAC
1 ACTCTCTCAC
*
8273913 TCTCTC
1 ACTCTC
8273919 ATTGTATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (10 bp):
ACTCTCTCAC
Found at i:8276731 original size:46 final size:44
Alignment explanation
Indices: 8276627--8276734 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8276617 TGTCTTTGAC
** * * *
8276627 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8276671 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8276717 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8276735 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8284128 original size:46 final size:44
Alignment explanation
Indices: 8284026--8284133 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 44
8284016 TGTCTTTGAC
** * *
8284026 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
*
8284070 ATGGACTTACATGGCTCAATCCTGTCTCCCAA-GCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCT-CCAATGCCATA--TATAAT
8284116 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8284134 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 29 0.52
45 4 0.07
46 23 0.41
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
Found at i:8286082 original size:33 final size:33
Alignment explanation
Indices: 8286040--8286105 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
8286030 ATGGACACAT
8286040 AAATCTATTTACAC-AGCTTAAAAACTTTTAATG
1 AAATCTATTTACACAAG-TTAAAAACTTTTAATG
8286073 AAATCTATTTACACAAGTTAAAAACTTTTAATG
1 AAATCTATTTACACAAGTTAAAAACTTTTAATG
8286106 TCTTATCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (33 bp):
AAATCTATTTACACAAGTTAAAAACTTTTAATG
Found at i:8286864 original size:3 final size:3
Alignment explanation
Indices: 8286856--8286893 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8286846 TGGAGAGTTT
8286856 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8286894 GAAATTGACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8289783 original size:15 final size:15
Alignment explanation
Indices: 8289763--8289792 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8289753 TATTTTTGCA
8289763 AAAATTTCTATTGGT
1 AAAATTTCTATTGGT
8289778 AAAATTTCTATTGGT
1 AAAATTTCTATTGGT
8289793 TCGGGAGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
AAAATTTCTATTGGT
Found at i:8290394 original size:6 final size:7
Alignment explanation
Indices: 8290363--8290392 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8290353 TAATGAGTAC
8290363 AAATAAA
1 AAATAAA
8290370 AAATAAA
1 AAATAAA
8290377 AAATAAA
1 AAATAAA
8290384 AAATAAA
1 AAATAAA
8290391 AA
1 AA
8290393 TATTCAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAATAAA
Found at i:8295077 original size:39 final size:39
Alignment explanation
Indices: 8295023--8295103 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
8295013 AAATATGGTT
* *
8295023 TTAATTATTAATAAAACAAAGT-GACCTGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAG-CATGGGGGAGTGGGA
8295062 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
8295101 TTA
1 TTA
8295104 GCTTTTTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 38 0.97
40 1 0.03
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.26
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
Found at i:8295631 original size:24 final size:24
Alignment explanation
Indices: 8295585--8295651 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
8295575 TTTATTTTTT
* **
8295585 ACATTATTATGTATATACCATGTAA
1 ACATT-TTATATATATATTATGTAA
* *
8295610 ATATTTTA-ATATTATATTATGTAT
1 ACATTTTATATA-TATATTATGTAA
8295634 ACATTTTATATATATATT
1 ACATTTTATATATATATT
8295652 TTAATATTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 2 0.06
24 25 0.74
25 7 0.21
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (24 bp):
ACATTTTATATATATATTATGTAA
Found at i:8296604 original size:134 final size:134
Alignment explanation
Indices: 8296260--8296562 Score: 597
Period size: 134 Copynumber: 2.3 Consensus size: 134
8296250 GACAATTCGG
*
8296260 GGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCCCGTTTGTTCGAAACAATTGAATATTCCTTC
1 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCGAAACAATTGAATATTCCTTC
8296325 GGTGTTCCACTCATGTCTTTTAAAAAATTTCATTAAAACGAAAGAGACGTTCGATATTTAGCAAT
66 GGTGTTCCACTCATGTCTTTTAAAAAATTTCATTAAAACGAAAGAGACGTTCGATATTTAGCAAT
8296390 TCAT
131 TCAT
8296394 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCGAAACAATTGAATATTCCTTC
1 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCGAAACAATTGAATATTCCTTC
8296459 GGTGTTCCACTCATGTCTTTTAAAAAATTTCATTAAAACGAAAGAGACGTTCGATATTTAGCAAT
66 GGTGTTCCACTCATGTCTTTTAAAAAATTTCATTAAAACGAAAGAGACGTTCGATATTTAGCAAT
8296524 TCAT
131 TCAT
8296528 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCC
1 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCC
8296563 TATTTGCTCA
Statistics
Matches: 168, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 168 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (134 bp):
GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCGAAACAATTGAATATTCCTTC
GGTGTTCCACTCATGTCTTTTAAAAAATTTCATTAAAACGAAAGAGACGTTCGATATTTAGCAAT
TCAT
Found at i:8308300 original size:44 final size:44
Alignment explanation
Indices: 8308246--8309031 Score: 1131
Period size: 44 Copynumber: 18.1 Consensus size: 44
8308236 AATCCAAGAT
* *
8308246 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
8308290 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
8308334 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGCTAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
8308378 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
8308422 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
8308466 GATTTGGCGTATCTGTAGTGGCAGAGAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
8308506 GATTTGGCATCTCTGTAGCGGCGGAGAACAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
8308550 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
8308594 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAAATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
8308638 GATTTGGCGTTTCTGTAGCGGTGGGGAGTAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
8308678 GATTTGGCATCTCTATAGTGGTGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
8308722 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
8308766 GATTTGGCGTTTCTGTAGCGGTGGGGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
8308810 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
8308854 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
8308898 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
8308942 GATTTGACGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * *
8308986 G-TTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
8309029 GAT
1 GAT
8309032 CGGTGTTCCT
Statistics
Matches: 664, Mismatches: 69, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
40 69 0.10
43 36 0.05
44 559 0.84
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:8308565 original size:216 final size:216
Alignment explanation
Indices: 8308246--8309031 Score: 1087
Period size: 216 Copynumber: 3.6 Consensus size: 216
8308236 AATCCAAGAT
8308246 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* * *
8308311 CGGAGAGCAGATCAAAGATAATAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGCTAA
63 CGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
*
8308376 CAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
8308441 GGCGGAGAGCAGATCGAAGATAACA
193 GGCGGAGAGCAGATCGAAGAT-ACA
* * *
8308466 GATTTGGCGTATCTGTAGTGGCAGAGAGTAGATCGAAGAT-GATTTGGCATCTCTGTAGCGGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGG
* * * *
8308530 AGAACAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
66 AGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAG
* * * * *
8308595 ATTTGGCGTCTCTGTAGCGGCAGAGAGCAAATCGAAGATAGCAGATTTGGCGTTTCTGTAGCGGT
131 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC
* *
8308660 GGGGAGTAGATCGAAGAT---
196 GGAGAGCAGATCGAAGATACA
* * * **
8308678 GATTTGGCATCTCTATAGTGGTGGAGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* * * ** * *
8308743 CGGAGAGCAGATCGAAGATAGCAGATTTGGCGTTTCTGTAGCGGTGGGGAGTAGATCGAAGATAA
63 CGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
8308808 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
8308873 AGCGGAGAGCAGATCGAAGATAGCA
193 GGCGGAGAGCAGATCGAAGATA-CA
* * * *
8308898 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGACGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* ** *
8308963 CGGAGAGCAGATCAAAGATAACAG-TTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAAATAA
63 CGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
8309027 CAGAT
128 CAGAT
8309032 CGGTGTTCCT
Statistics
Matches: 503, Mismatches: 55, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
212 35 0.07
216 314 0.62
219 36 0.07
220 118 0.23
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (216 bp):
GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGG
AGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAG
ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC
GGAGAGCAGATCGAAGATACA
Done.