Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 33 of 182
Found at i:10712958 original size:61 final size:57
Alignment explanation
Indices: 10712863--10712990 Score: 175
Period size: 61 Copynumber: 2.2 Consensus size: 57
10712853 ATAATATTAT
* * *
10712863 TTTAATAGTTTTAATATTACATTTAATTTAATATTTATCTTATAGATAAGTATTCTATCAA
1 TTTAATA-TTTTAATATTAAATTTAATCTAATATTTATC-T-TA-ATAAGTATTATATCAA
*
10712924 TTTAATATATTTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAA
1 TTTAATAT-TTTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATCAA
10712982 TTTAATATT
1 TTTAATATT
10712991 AAAGTAATTA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
57 1 0.02
58 22 0.35
59 2 0.03
60 2 0.03
61 35 0.56
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (57 bp):
TTTAATATTTTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATCAA
Found at i:10718515 original size:47 final size:47
Alignment explanation
Indices: 10718444--10719019 Score: 559
Period size: 47 Copynumber: 12.4 Consensus size: 47
10718434 CCCATATGTG
10718444 AAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
10718493 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
10718540 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
10718587 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
* *
10718634 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
* * * * *
10718681 AAAGTGTATACATGTGATAAGGCCTAATAGCCGCTGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
* *
10718728 AAAGTGTATATACATGTGATAAGGCCTAATGGCC--TGTG-TGTATAT-
1 AAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
* * * ** * *
10718773 -ATGTG-ATA-A-G-GCCTAATGG-CTGATGTGAGGAATGTGAAAGTGTAT-AC
1 AAAGTGTATATATGTG-ATAA-GGCCTAATG-GCCG-ATGTG--A-TGAATCTC
* * * * * * **
10718820 ATA-TGTGATA-A-G-GCCTAATAGCC-GAT-G-TGATG-AATG--T-GA
1 AAAGTGT-ATATATGTG-ATAA-GGCCTAATGGCCGATGTGATGAATCTC
10718859 -AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
10718905 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
* * * * * * * * *
10718952 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
*
10718999 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
10719020 TCCCGAAGGG
Statistics
Matches: 456, Mismatches: 42, Indels: 60
0.82 0.08 0.11
Matches are distributed among these distances:
38 5 0.01
39 17 0.04
40 10 0.02
41 4 0.01
42 5 0.01
43 10 0.02
44 4 0.01
45 4 0.01
46 6 0.01
47 343 0.75
49 47 0.10
50 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTC
Found at i:10718607 original size:94 final size:94
Alignment explanation
Indices: 10718444--10719019 Score: 691
Period size: 94 Copynumber: 6.2 Consensus size: 94
10718434 CCCATATGTG
10718444 AAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTG
1 AAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTG
10718509 ATAAGGCCTAATGGCCGATGTGATGAATCTC
64 ATAAGGCCTAATGGCCGATGTGATGAATCTC
10718540 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
10718605 AAGGCCTAATGGCCGATGTGATGAATCTC
66 AAGGCCTAATGGCCGATGTGATGAATCTC
* * *
10718634 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
* * * *
10718699 AAGGCCTAATAGCCGCTGTGATGAATGTG
66 AAGGCCTAATGGCCGATGTGATGAATCTC
* * *
10718728 AAAGTGTATATACATGTGATAAGGCCTAATGGCC--TGTG-TGTATAT--ATGTG-ATA-A-G-G
1 AAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTG
* * ** *
10718784 CCTAATGG-CTGATGTGAGGAATGTGA--AA-GT-
64 -ATAA-GGCCTAATG-GCCG-ATGTGATGAATCTC
* * * * *
10718814 ---GTATACATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
10718876 AAGGCCTAATGGCCGATGTGATGAATCTC
66 AAGGCCTAATGGCCGATGTGATGAATCTC
*
10718905 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
* * * * * * * *
10718970 AGGGCCGAGTGGCCAACGTGATGGATGTG
66 AAGGCCTAATGGCCGATGTGATGAATCTC
*
10718999 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
10719020 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 42, Indels: 48
0.82 0.08 0.10
Matches are distributed among these distances:
81 20 0.05
83 10 0.02
84 5 0.01
86 4 0.01
87 12 0.03
88 15 0.04
89 16 0.04
90 10 0.02
91 4 0.01
93 5 0.01
94 282 0.68
96 32 0.08
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (94 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATCTC
Found at i:10718781 original size:32 final size:32
Alignment explanation
Indices: 10718731--10718792 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
10718721 GAATGTGAAA
10718731 GTGTATATACATGTGATAAGGCCTAATGGCCT
1 GTGTATATACATGTGATAAGGCCTAATGGCCT
* *
10718763 GTGTGTATATATGTGATAAGGCCTAATGGC
1 GTGTATATACATGTGATAAGGCCTAATGGC
10718793 TGATGTGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (32 bp):
GTGTATATACATGTGATAAGGCCTAATGGCCT
Found at i:10718798 original size:128 final size:127
Alignment explanation
Indices: 10718637--10719019 Score: 446
Period size: 128 Copynumber: 2.9 Consensus size: 127
10718627 GAATCTCAAA
*
10718637 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAC-ATGTGATAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGTGTATACAATGTGATAA
*
10718701 GGCCTAATAGCCGCTGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCTGT
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCTGT
*
10718765 GTGTATATATGTGATAAGGCCTAATGGCTGATGTGAGGAATGTGAAAGTGTATACATATGTGATA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGTGTATACA-ATGTGATA
10718830 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
65 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----
10718895 GATGAATCT
125 --TG----T
* * * *
10718904 CAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATA-TATGTG
1 ----GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGTGTATACAATGTG
* * * * * * * * *
10718968 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
62 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10719020 TCCCGAAGGG
Statistics
Matches: 221, Mismatches: 17, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
128 74 0.33
130 46 0.21
135 2 0.01
139 1 0.00
141 48 0.22
143 50 0.23
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (127 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGTGTATACAATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCTGT
Found at i:10718826 original size:81 final size:81
Alignment explanation
Indices: 10718684--10718838 Score: 247
Period size: 81 Copynumber: 1.9 Consensus size: 81
10718674 GAATGTGAAA
* * *
10718684 GTGTATACATGTGATAAGGCCTAATAGCCGCTGTGATGAATGTGAAAGTGTATATACATGTGATA
1 GTGTATACATGTGATAAGGCCTAATAGCCGATGTGAGGAATGTGAAAGTGTATACACATGTGATA
10718749 AGGCCTAATGGCCTGT
66 AGGCCTAATGGCCTGT
* * * *
10718765 GTGTATATATGTGATAAGGCCTAATGGCTGATGTGAGGAATGTGAAAGTGTATACATATGTGATA
1 GTGTATACATGTGATAAGGCCTAATAGCCGATGTGAGGAATGTGAAAGTGTATACACATGTGATA
10718830 AGGCCTAAT
66 AGGCCTAAT
10718839 AGCCGATGTG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (81 bp):
GTGTATACATGTGATAAGGCCTAATAGCCGATGTGAGGAATGTGAAAGTGTATACACATGTGATA
AGGCCTAATGGCCTGT
Found at i:10718884 original size:177 final size:173
Alignment explanation
Indices: 10718590--10718936 Score: 568
Period size: 177 Copynumber: 2.0 Consensus size: 173
10718580 GAATCTCAAA
*
10718590 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATCTCAAAGTGTATATATGTGATAAG
* *
10718655 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATAGCCGCTGTGA
66 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATAGCCGATGTGA
* *
10718720 TGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCTGT
131 TGAATCTCAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCTGT
* * *
10718765 GTGTATATATGTGATAAGGCCTAATGGCTGATGTGAGGAATGTGAAAGTGTATACATATGTGATA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATCTCAAAGTGTAT--ATATGTGATA
* *
10718830 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
64 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATAGCCGATGT
10718895 GATGAATCTCAAAGTGTATATATGTGATAAGGCCTAATGGCC
129 GATGAATCTCAAAGTGTATATATGTGATAAGGCCTAATGGCC
10718937 GATGTGATGA
Statistics
Matches: 160, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
175 70 0.44
177 90 0.56
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (173 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATCTCAAAGTGTATATATGTGATAAG
GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATAGCCGATGTGA
TGAATCTCAAAGTGTATATATGTGATAAGGCCTAATGGCCTGT
Found at i:10719194 original size:37 final size:37
Alignment explanation
Indices: 10719138--10719216 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
10719128 CCGAGCTCTA
* * * *
10719138 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
10719175 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
10719212 AAGAC
1 AAGAC
10719217 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:10727916 original size:47 final size:47
Alignment explanation
Indices: 10727858--10728292 Score: 852
Period size: 47 Copynumber: 9.3 Consensus size: 47
10727848 CAGCCAAGAC
* *
10727858 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10727905 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10727952 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10727999 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728046 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728093 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728140 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728187 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728234 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
10728281 AGTGTATATATG
1 AGTGTATATATG
10728293 CGCTTTATGC
Statistics
Matches: 386, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 386 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTCAA
Found at i:10728419 original size:37 final size:37
Alignment explanation
Indices: 10728363--10728433 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
10728353 CTGAGCTCTA
* * *
10728363 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
10728400 AAGACCCGATAACTTCGTGTGGAGATTATGTCCG
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCG
10728434 GGTTAGACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:10737778 original size:124 final size:124
Alignment explanation
Indices: 10737310--10737774 Score: 549
Period size: 126 Copynumber: 3.7 Consensus size: 124
10737300 TTGAAGTCGC
* * * * *
10737310 TTCTGAGCAACTAGTTTAAAAAATGCTTCAAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCG
1 TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCG
* * *
10737375 CGCCCTCGTGGACGCGCTTTTACTACAGTTGATCCTGGAAGAAATAATTTCGAGTTGACGT
66 CGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCT-GAA-AAATAATTTCGAGTTGACGT
* * * * * *
10737436 TTTTGAGGAAATAGTTTAAAAAACGCTTCAAGAAATATGCTTTATAAGAAGAATTTGTG-AATCG
1 TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCG
* * * *
10737500 CGCCCACATGGACGCACTTTTGCTACAGTAGGTCCTGAGAAAATAATTTTGAGTTGACGT
66 CGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGA-AAAATAATTTCGAGTTGACGT
* * *
10737560 TTCTGAGCAAATAGTATAAAACAACGCTACAAGCAACATGCTATT-TGAGAATAATTTGTGAAAT
1 TTCTGAGCAAATAGTATAAAA-AACGCTTCAAGCAAGATGCT-TTATGAGAAGAATTTGTGAAAT
* * * *
10737624 CGCGCCCTCGTGGACGCGCTTTTGCTATAGTTGGTCCTAGAAAAATAATTTCAACTTGACGT
64 CGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCT-GAAAAATAATTTCGAGTTGACGT
* ** ** * *
10737686 TTCTAAGCAAATAGTAT-AAAGTCGCTTCTTGCAGGATGCTTTATGAGAAGAATTTGTGAAATCA
1 TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCG
* *
10737750 CACTCACGTGGACGCGCTTTTGCTA
66 CGCCCACGTGGACGCGCTTTTGCTA
10737775 TAGTAACATG
Statistics
Matches: 288, Mismatches: 45, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
123 2 0.01
124 93 0.32
125 69 0.24
126 122 0.42
127 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (124 bp):
TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCG
CGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGAAAAATAATTTCGAGTTGACGT
Found at i:10740792 original size:22 final size:22
Alignment explanation
Indices: 10740751--10741840 Score: 1195
Period size: 22 Copynumber: 50.0 Consensus size: 22
10740741 TCAAATTATA
10740751 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10740772 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10740794 TTAAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10740816 TTAAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
10740838 TTTAGGTTAAGGG-TTAGTATT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10740859 TTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
10740881 TTTAA-TTTAGGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10740902 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10740924 TTTAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10740946 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10740967 TTTAGGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10740988 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741010 TTTAATTTAAGGG-TTAGTG-T
1 TTTAAGTTAAGGGTTTAGGGTT
10741030 TTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741051 TTTAAGTTTAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741073 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741094 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741115 TTTAGGCTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741137 TTTAATTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741158 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741180 TTTAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741202 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741223 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741244 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741266 TTTAATTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741287 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10741309 TTTAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
** * *
10741330 TTTATTTTAAGGG-TTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741351 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
10741373 TTTAATTTAAGGG-TTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
10741394 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
10741416 TTTAAGTTAAGAGCCT-GAGGTT
1 TTTAAGTTAAGGGTTTAG-GGTT
*
10741438 TTAAAGTT-AGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741459 TTCAAGTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741480 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741502 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10741523 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10741545 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741567 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741588 TTCAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
10741609 TTTAATTTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
10741631 TTGAATTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
10741653 TTTAATTTAAGAGTTTAGGGTTT
1 TTTAAGTTAAGGGTTTAGGG-TT
* *
10741676 TTTAGGTTAAGGGTTTAGAG-T
1 TTTAAGTTAAGGGTTTAGGGTT
10741697 TTTAATGTTAAGGG-TTAGGGTT
1 TTTAA-GTTAAGGGTTTAGGGTT
* *
10741719 TTTAGGTTAAGTGTTTAGGGTTAGGGTT
1 TTTAAGTTAA--G----GGTTTAGGGTT
* *
10741747 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
10741769 TTAAAATTAAGGGGTTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
*
10741791 TTTAATTTAAGGGTTAGGGTTAGGGTT
1 TTTAAGTTAAGGG-T----TTAGGGTT
* *
10741818 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
10741840 T
1 T
10741841 GTCAATTAAA
Statistics
Matches: 919, Mismatches: 113, Indels: 73
0.83 0.10 0.07
Matches are distributed among these distances:
20 13 0.01
21 393 0.43
22 454 0.49
23 19 0.02
26 2 0.00
27 20 0.02
28 18 0.02
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.46
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:10740818 original size:43 final size:43
Alignment explanation
Indices: 10740751--10741811 Score: 912
Period size: 43 Copynumber: 24.5 Consensus size: 43
10740741 TCAAATTATA
*
10740751 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
10740794 TTAAAGTTAAAGGTTTAGGGTTTTAAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * ** * *
10740838 TTTAGGTT-AAGGGTTAGTATTTTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAAGGTTTAG-GGTTTTAAGTTAAGGGTTTAGGGTT
* ** * *
10740881 TTTAATTTAGGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
10740924 TTTAAGTT-AAGGTTTTAGGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAAGG-TTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* *
10740967 TTTAGGTTAAAGG-TTAGGGTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * *
10741010 TTTAA-TTTAAGGGTTAGTGTTTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
10741051 TTTAAGTTTAGGGTTTAGGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
10741094 TTTAGGTT-AAGGGTTAGGGTTTTTAGGCTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
10741137 TTTAATTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
10741180 TTTAAGTTAAGGGTCTAGGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * *
10741223 TTTAGGTT-AAGGGTTAGGGTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
10741266 TTTAATTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
** * *
10741309 TTTAAGTT-AAGGTTTAGGGTTTTTATTTTAAGGG-TTATGATT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * * *
10741351 TTTAGGTTAAGGGTTTATGGTTTTTAATTTAAGGG-TTATGATT
1 TTTAAGTTAAAGGTTTA-GGGTTTTAAGTTAAGGGTTTAGGGTT
* * **
10741394 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGAGCCT-GAGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAG-GGTT
* * *
10741438 TTAAAGTT-AGGGTTTAGGGTTTTCAAGTTAAGGG-TTATGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
10741480 TTTAGGTTAAGGGTTTATGGTTTTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAAGGTTTA-GGGTTTTAAGTTAAGGGTTTAGGGTT
*
10741523 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * *
10741567 TTAAAGTT-AAGGGTTAGGGTTTTCAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
10741609 TTTAA-TTTAAGGATTTATGGTTTTGAATTTAAGGGTTTATGGTT
1 TTTAAGTTAAAGG-TTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * *
10741653 TTTAA-TTTAAGAGTTTAGGGTTTTTTAGGTTAAGGGTTTAGAG-T
1 TTTAAGTTAAAG-GTTTAGGG--TTTTAAGTTAAGGGTTTAGGGTT
* * *
10741697 TTTAATGTT-AAGGGTTAGGGTTTTTAGGTTAAGTGTTTAGGGTTAGGGTT
1 TTTAA-GTTAAAGGTTTAGGG-TTTTAAGTTAA--G----GGTTTAGGGTT
* * * * * *
10741747 TTTAGGTTAAGGGTTTATGGTTTTAAAATTAAGGGGTTAGGGGT
1 TTTAAGTTAAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* *
10741791 TTTAA-TTTAAGGGTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
10741812 AGGGTTTTTA
Statistics
Matches: 841, Mismatches: 127, Indels: 100
0.79 0.12 0.09
Matches are distributed among these distances:
41 8 0.01
42 153 0.18
43 463 0.55
44 160 0.19
45 18 0.02
46 6 0.01
48 1 0.00
49 14 0.02
50 18 0.02
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.46
Consensus pattern (43 bp):
TTTAAGTTAAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
Found at i:10741719 original size:28 final size:28
Alignment explanation
Indices: 10741680--10741757 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
10741670 GGGTTTTTTA
*
10741680 GGTTAAGGGTTTAGAGTTTTAA-TGTTAAG
1 GGTT-AGGGTTTAGAG-GTTAAGTGTTAAG
** *
10741709 GGTTAGGGTTTTTAGGTTAAGTGTTTAG
1 GGTTAGGGTTTAGAGGTTAAGTGTTAAG
**
10741737 GGTTAGGGTTTTTAGGTTAAG
1 GGTTAGGGTTTAGAGGTTAAG
10741758 GGTTTATGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 4 0.09
28 36 0.82
29 4 0.09
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.44
Consensus pattern (28 bp):
GGTTAGGGTTTAGAGGTTAAGTGTTAAG
Found at i:10741750 original size:15 final size:14
Alignment explanation
Indices: 10741709--10741762 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
10741699 TAATGTTAAG
10741709 GGTTAGGGTTTTTA
1 GGTTAGGGTTTTTA
* *
10741723 GGTTA-AGTGTTTA
1 GGTTAGGGTTTTTA
10741736 GGGTTAGGGTTTTTA
1 -GGTTAGGGTTTTTA
10741751 GGTTAAGGGTTT
1 GGTT-AGGGTTT
10741763 ATGGTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 6 0.18
14 14 0.42
15 13 0.39
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
GGTTAGGGTTTTTA
Found at i:10741762 original size:28 final size:28
Alignment explanation
Indices: 10741707--10741768 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
10741697 TTTAATGTTA
*
10741707 AGGGTTAGGGTTTTTAGGTTAAGTGTTT
1 AGGGTTAGGGTTTTTAGGTTAAGGGTTT
10741735 AGGGTTAGGGTTTTTAGGTTAAGGGTTT
1 AGGGTTAGGGTTTTTAGGTTAAGGGTTT
*
10741763 ATGGTT
1 AGGGTT
10741769 TTAAAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (28 bp):
AGGGTTAGGGTTTTTAGGTTAAGGGTTT
Found at i:10741815 original size:27 final size:27
Alignment explanation
Indices: 10741780--10741832 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
10741770 TAAAATTAAG
*
10741780 GGGTTAGGGGTTTTAATTTAAGGGTTA
1 GGGTTAGGGGTTTTAAGTTAAGGGTTA
* *
10741807 GGGTTAGGGTTTTTAGGTTAAGGGTT
1 GGGTTAGGGGTTTTAAGTTAAGGGTT
10741833 TAAGGTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.42
Consensus pattern (27 bp):
GGGTTAGGGGTTTTAAGTTAAGGGTTA
Found at i:10741849 original size:71 final size:70
Alignment explanation
Indices: 10741599--10741840 Score: 264
Period size: 71 Copynumber: 3.5 Consensus size: 70
10741589 TCAAGTTAAT
** * * * *
10741599 GGTTAGGGTTTTTAATTTAAGGATTTATGGTTTTGAATTTAAGGGTTTATGGTTTTTAATTTAA-
1 GGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTTT-AATTTAAGGGGTTAGGGTTTTTAATTTAAG
10741663 -G--A-
65 GGTTAG
* **
10741665 GTTTAGGGTTTTTTAGGTTAAGGGTTT-AGAGTTTTAATGTTAA-GGGTTAGGGTTTTTAGGTTA
1 GGTTAGGG-TTTTTAGGTTAAGGGTTTAAG-GTTTTAAT-TTAAGGGGTTAGGGTTTTTAATTTA
*
10741728 AGTGTTTAG
63 AG-GGTTAG
* * *
10741737 GGTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTAAAATTAAGGGGTTAGGGGTTTTAATTTAAG
1 GGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTTT-AATTTAAGGGGTTAGGGTTTTTAATTTAAG
10741802 GGTTAG
65 GGTTAG
10741808 GGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTT
1 GGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTT
10741841 GTCAATTAAA
Statistics
Matches: 146, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
66 28 0.19
67 24 0.16
71 65 0.45
72 29 0.20
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (70 bp):
GGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTTTAATTTAAGGGGTTAGGGTTTTTAATTTAAGG
GTTAG
Found at i:10742388 original size:18 final size:18
Alignment explanation
Indices: 10742362--10742404 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
10742352 GACTCGAAAA
* *
10742362 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
10742380 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
10742398 AGGAAAC
1 AGGAAAC
10742405 GCAGCTAGCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:10743013 original size:7 final size:7
Alignment explanation
Indices: 10743003--10743035 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
10742993 TTATATACAT
10743003 AATACTA
1 AATACTA
10743010 AATACTA
1 AATACTA
10743017 AATACTA
1 AATACTA
*
10743024 AATATTA
1 AATACTA
10743031 AATAC
1 AATAC
10743036 CAATCGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:10744155 original size:18 final size:17
Alignment explanation
Indices: 10744134--10744167 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
10744124 TTTTACGGTT
10744134 TAAAAAAATTTTTAAAAA
1 TAAAAAAA-TTTTAAAAA
10744152 TAAAAAAATTTTAAAA
1 TAAAAAAATTTTAAAA
10744168 TTATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAAAAATTTTAAAAA
Found at i:10744259 original size:22 final size:25
Alignment explanation
Indices: 10744234--10744280 Score: 73
Period size: 22 Copynumber: 2.0 Consensus size: 25
10744224 ATAAATATGG
10744234 ATTTGAGA-GAAATTT-TGA-AGGA
1 ATTTGAGAGGAAATTTGTGAGAGGA
10744256 ATTTGAGAGGAAATTTGTGAGAGGA
1 ATTTGAGAGGAAATTTGTGAGAGGA
10744281 TTAGTTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.36
23 7 0.32
24 3 0.14
25 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (25 bp):
ATTTGAGAGGAAATTTGTGAGAGGA
Found at i:10745272 original size:18 final size:18
Alignment explanation
Indices: 10745227--10745264 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
10745217 GCAAAATTAT
*
10745227 AATTAT-GAATAAATGTG
1 AATTATGGATTAAATGTG
10745244 AATTATGGATTAAAT-TG
1 AATTATGGATTAAATGTG
10745261 AATT
1 AATT
10745265 TTGAGATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (18 bp):
AATTATGGATTAAATGTG
Found at i:10745550 original size:41 final size:41
Alignment explanation
Indices: 10745487--10745674 Score: 180
Period size: 41 Copynumber: 4.6 Consensus size: 41
10745477 GTTAGTTATT
* ** *
10745487 CCCTAAATTACACATACATGCCCCTATTTATACTTCGGTAC
1 CCCTGAATTACACATATGTGCCCCTATTTGTACTTCGGTAC
*
10745528 CCCTGAATTACACATATGTGCCCCTATTTGTACTTTGGTAC
1 CCCTGAATTACACATATGTGCCCCTATTTGTACTTCGGTAC
* * * * *
10745569 CCCTGAATTGCACATACGTGCCCCTGTTTGTACGTCAGTAC
1 CCCTGAATTACACATATGTGCCCCTATTTGTACTTCGGTAC
* * * * * * **
10745610 CCTTAAATTGCATAT-TCGTGCCCCTGTTCGTACTTCGAAAC
1 CCCTGAATTACACATAT-GTGCCCCTATTTGTACTTCGGTAC
* *
10745651 CCCCGAACTACACATATGTGCCCC
1 CCCTGAATTACACATATGTGCCCC
10745675 GGTTTACACT
Statistics
Matches: 119, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 118 0.99
42 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.31
Consensus pattern (41 bp):
CCCTGAATTACACATATGTGCCCCTATTTGTACTTCGGTAC
Found at i:10745594 original size:21 final size:21
Alignment explanation
Indices: 10745527--10745594 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
10745517 TACTTCGGTA
* *
10745527 CCCCTGAATTACACATATGTG
1 CCCCTGAATTGCACATACGTG
* * * ** *
10745548 CCCCT-ATTTGTACTTTGGTA
1 CCCCTGAATTGCACATACGTG
10745568 CCCCTGAATTGCACATACGTG
1 CCCCTGAATTGCACATACGTG
10745589 CCCCTG
1 CCCCTG
10745595 TTTGTACGTC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.31
Consensus pattern (21 bp):
CCCCTGAATTGCACATACGTG
Found at i:10746639 original size:42 final size:42
Alignment explanation
Indices: 10746593--10746681 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
10746583 GTACACAGGC
**
10746593 GTGTGAGGCTATTACGAGAGTTACATGGCCTAGCACACGGAT
1 GTGTGAGGCTATTACGAGAGTTACACAGCCTAGCACACGGAT
* * * * *
10746635 GTGTGTGGCTATTTCGAGATTTACACAGCCTAGCATACGGGT
1 GTGTGAGGCTATTACGAGAGTTACACAGCCTAGCACACGGAT
10746677 GTGTG
1 GTGTG
10746682 GCTTAGCCGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (42 bp):
GTGTGAGGCTATTACGAGAGTTACACAGCCTAGCACACGGAT
Found at i:10748120 original size:35 final size:35
Alignment explanation
Indices: 10748074--10748142 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
10748064 ACAAAAATAT
*
10748074 GTTAAAAAGGCTGTGAAGCATATCTCGCTAACATA
1 GTTAAAAAGGCTGTGAACCATATCTCGCTAACATA
*
10748109 GTTAAAAAGGCTGTGAACCATATCTCGCTTACAT
1 GTTAAAAAGGCTGTGAACCATATCTCGCTAACAT
10748143 TGGGTGCTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (35 bp):
GTTAAAAAGGCTGTGAACCATATCTCGCTAACATA
Found at i:10751904 original size:53 final size:53
Alignment explanation
Indices: 10751813--10751923 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 53
10751803 TAAGAGGCAT
* * * *
10751813 TTACACAGTAATGCTTTGTAACTCTATTCCGACAATGGATATGGGTTAGGGGTG
1 TTACACAGTAATACTCTGTAACTCTATTCAGACAATGGAGATGGGTTA-GGGTG
*
10751867 TTACACA-TAATACTCTGTAACTCTAATTCAG-CGATGGAGATGGGTTAGGGTG
1 TTACACAGTAATACTCTGTAACTCT-ATTCAGACAATGGAGATGGGTTAGGGTG
10751919 TTACA
1 TTACA
10751924 TTTAGTGGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 10 0.20
53 29 0.57
54 12 0.24
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (53 bp):
TTACACAGTAATACTCTGTAACTCTATTCAGACAATGGAGATGGGTTAGGGTG
Found at i:10761033 original size:15 final size:15
Alignment explanation
Indices: 10761013--10761042 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10761003 CTATGCATGC
*
10761013 AAAATATAAAAGACA
1 AAAATACAAAAGACA
10761028 AAAATACAAAAGACA
1 AAAATACAAAAGACA
10761043 TAATAGTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:10764859 original size:30 final size:30
Alignment explanation
Indices: 10764825--10764883 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
10764815 GGCCTTTCCT
*
10764825 TACAAGTGTAGCTTTGTGTGTTTCCACTTC
1 TACAAGTCTAGCTTTGTGTGTTTCCACTTC
10764855 TACAAGTCTAGCTTTGTGTGTTTCCACTT
1 TACAAGTCTAGCTTTGTGTGTTTCCACTT
10764884 TCCATTCGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (30 bp):
TACAAGTCTAGCTTTGTGTGTTTCCACTTC
Found at i:10768016 original size:37 final size:36
Alignment explanation
Indices: 10767954--10768029 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
10767944 GATAATCACT
*
10767954 TTAATATTAAATTAATAAAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
*
10767991 TTAA-ATTAAATCTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAAT-TAATA-AAATACTATTAAAATAATA
10768027 TTA
1 TTA
10768030 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 12 0.34
37 21 0.60
38 2 0.06
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:10770202 original size:20 final size:20
Alignment explanation
Indices: 10770177--10770223 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
10770167 AACTATTTCA
10770177 TTACTTA-TTTACCACTCCAT
1 TTACTTACTTT-CCACTCCAT
* *
10770197 TTACTTACTTTCTATTCCAT
1 TTACTTACTTTCCACTCCAT
10770217 TTACTTA
1 TTACTTA
10770224 GCATAAGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (20 bp):
TTACTTACTTTCCACTCCAT
Found at i:10771264 original size:48 final size:46
Alignment explanation
Indices: 10771137--10771257 Score: 154
Period size: 48 Copynumber: 2.6 Consensus size: 46
10771127 TGTGCCATGG
* * * *
10771137 TGTCTTTCAACTATGGTCTTATTT-ATTCTCGTCTTGATGCCATAA
1 TGTCTTTCAACTATGGTCTTATTTCTTTTTCATCTTCATGCCATAA
* * *
10771182 TGTCTTTCAACCATGGTCTTATTCTTTTTTTTCATCTTCTTGCCATAA
1 TGTCTTTCAACTATGGTCTTA-T-TTCTTTTTCATCTTCATGCCATAA
10771230 TGTCTTTCAACTATGGTCTTATTTCTTT
1 TGTCTTTCAACTATGGTCTTATTTCTTT
10771258 GATTCATGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
45 20 0.31
46 6 0.09
47 3 0.05
48 36 0.55
ACGTcount: A:0.17, C:0.21, G:0.11, T:0.51
Consensus pattern (46 bp):
TGTCTTTCAACTATGGTCTTATTTCTTTTTCATCTTCATGCCATAA
Found at i:10771289 original size:45 final size:45
Alignment explanation
Indices: 10771222--10771419 Score: 154
Period size: 45 Copynumber: 4.4 Consensus size: 45
10771212 TTCATCTTCT
* * *
10771222 TGCCATAATGTCTTTCAACTATGGTCTTATTTCTTTGATTCATGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTATTTCTTAGATTCATGA
* * * * *
10771267 TGCCATAGCGTCTTTCAGCTATGGTTTTA-CTCAATAGGATT-GTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTATTTC-TTA-GATTCATGA
* ** *
10771312 TGCCATAACGTCTTTCA-ATCATGGTCTTATTTGATAGAATCATGA
1 TGCCATAACGTCTTTCAGCT-ATGGTCTTATTTCTTAGATTCATGA
** * * *
10771357 TGCCATAACGTCTTTCAG-TCACAGTCTTA-CTCAATAGAATCATGA
1 TGCCATAACGTCTTTCAGCT-ATGGTCTTATTTC-TTAGATTCATGA
*
10771402 TGCCATAACATCTTTCAG
1 TGCCATAACGTCTTTCAG
10771420 TCATGGTTTT
Statistics
Matches: 126, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
44 7 0.06
45 114 0.90
46 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTATTTCTTAGATTCATGA
Found at i:10771355 original size:90 final size:90
Alignment explanation
Indices: 10771222--10771476 Score: 255
Period size: 90 Copynumber: 2.8 Consensus size: 90
10771212 TTCATCTTCT
* ** * * *
10771222 TGCCATAATGTCTTTCAA-CTATGGTCTTATTTCTTTGATTCATGATGCCATAGCGTCTTTCAG-
1 TGCCATAACGTCTTTCAATC-ATGGTCTTATTTGATAGAATCATGATGCCATAACGTCTTTCAGT
** * * **
10771285 CTATGGTTTTACTCAATAGGATTGTGA
65 C-ACAGTCTTACTCAATAGAATCATGA
10771312 TGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAATCATGATGCCATAACGTCTTTCAGTC
1 TGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAATCATGATGCCATAACGTCTTTCAGTC
10771377 ACAGTCTTACTCAATAGAATCATGA
66 ACAGTCTTACTCAATAGAATCATGA
* * * * * ** * *
10771402 TGCCATAACATCTTTCAGTCATGGTTTTACTCGATAGAATTGTAATGACATAACGTCTCTT-AGT
1 TGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAATCATGATGCCATAACGTCT-TTCAGT
**
10771466 CATGGTCTTAC
65 CACAGTCTTAC
10771477 ACGTTTCCGG
Statistics
Matches: 139, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
90 135 0.97
91 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (90 bp):
TGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAATCATGATGCCATAACGTCTTTCAGTC
ACAGTCTTACTCAATAGAATCATGA
Found at i:10771420 original size:45 final size:45
Alignment explanation
Indices: 10771261--10771476 Score: 238
Period size: 45 Copynumber: 4.8 Consensus size: 45
10771251 TTTCTTTGAT
* * *
10771261 TCATGATGCCATAGCGTCTTTCAG-CTATGGTTTTACTCAATAGGA
1 TCATGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCAATAGAA
** * * **
10771306 TTGTGATGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAA
1 TCATGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
**
10771351 TCATGATGCCATAACGTCTTTCAGTCACAGTCTTACTCAATAGAA
1 TCATGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* * *
10771396 TCATGATGCCATAACATCTTTCAGTCATGGTTTTACTCGATAGAA
1 TCATGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
** * *
10771441 TTGTAATGACATAACGTCTCTT-AGTCATGGTCTTAC
1 TCATGATGCCATAACGTCT-TTCAGTCATGGTCTTAC
10771477 ACGTTTCCGG
Statistics
Matches: 141, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
45 138 0.98
46 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (45 bp):
TCATGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
Found at i:10771519 original size:135 final size:135
Alignment explanation
Indices: 10771222--10771520 Score: 295
Period size: 135 Copynumber: 2.2 Consensus size: 135
10771212 TTCATCTTCT
* * * * * *
10771222 TGCCATAATGTCTTTCAACTATGGTCTTATTTCTTTGATTCATGATGCCATAGCGTCTTTCAGCT
1 TGCCATAATGTCTTTCAACTATGGTCTTATCTCATAGAATCATGATGCCATAACATCTTTCAGCT
* * * ***
10771287 ATGGTTTTACTCAATAGGATTGTGATGCCATAACGTCTTTCAATCATGGTCTTATTTGATAGAAT
66 ATGGTTTTACTCAATAGAATTGTAATGACATAACGTCTTTCAATCATGGTCTTACACGATAGAAT
10771352 CATGA
131 CATGA
* * **
10771357 TGCCATAACGTCTTTC-AGTCACAGTCTTA-CTCAATAGAATCATGATGCCATAACATCTTTCAG
1 TGCCATAATGTCTTTCAACT-ATGGTCTTATCTC-ATAGAATCATGATGCCATAACATCTTTCAG
* * *
10771420 -TCATGGTTTTACTCGATAGAATTGTAATGACATAACGTCTCTT-AGTCATGGTCTTACACGTTT
64 CT-ATGGTTTTACTCAATAGAATTGTAATGACATAACGTCT-TTCAATCATGGTCTTACACG-AT
* * *
10771483 CCG-GT-ATGG
126 -AGAATCATGA
*
10771492 TGCCATAGTGTCTTTCAACTATGGTCTTA
1 TGCCATAATGTCTTTCAACTATGGTCTTA
10771521 ATCATTTCCT
Statistics
Matches: 130, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
134 5 0.04
135 118 0.91
136 6 0.05
137 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (135 bp):
TGCCATAATGTCTTTCAACTATGGTCTTATCTCATAGAATCATGATGCCATAACATCTTTCAGCT
ATGGTTTTACTCAATAGAATTGTAATGACATAACGTCTTTCAATCATGGTCTTACACGATAGAAT
CATGA
Found at i:10792609 original size:37 final size:36
Alignment explanation
Indices: 10792567--10792702 Score: 118
Period size: 37 Copynumber: 3.7 Consensus size: 36
10792557 GCTTCACTCG
* *
10792567 GTATAACAGTAGAATTTGATCAATTAAACATCAGTCA
1 GTATAACAGTAGAATTTGCTCAATTAAAC-TCATTCA
*
10792604 GTATAACAGTA-AGATTTGCT-ATGTTAAACTCTATTCA
1 GTATAACAGTAGA-ATTTGCTCA-ATTAAACTC-ATTCA
* * *
10792641 GTATAACAGTATG-ATTTGCTCGATTGAGCTTCATTCA
1 GTATAACAGTA-GAATTTGCTCAATTAAAC-TCATTCA
10792678 GTATAACAGTA-AGATTTGGCTCAAT
1 GTATAACAGTAGA-ATTT-GCTCAAT
10792703 AGAGCATACT
Statistics
Matches: 81, Mismatches: 8, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
36 4 0.05
37 69 0.85
38 8 0.10
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (36 bp):
GTATAACAGTAGAATTTGCTCAATTAAACTCATTCA
Found at i:10797690 original size:40 final size:40
Alignment explanation
Indices: 10797302--10797689 Score: 704
Period size: 40 Copynumber: 9.7 Consensus size: 40
10797292 GCAAACACCT
* * *
10797302 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
10797342 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
10797382 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
10797422 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
10797462 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
10797502 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
10797542 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
10797582 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
10797622 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
10797662 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
10797690 TCCAATGCTC
Statistics
Matches: 338, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 338 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:10809235 original size:15 final size:15
Alignment explanation
Indices: 10809217--10809247 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10809207 ATTAATGAAA
10809217 ATCAAATGTATTACT
1 ATCAAATGTATTACT
10809232 ATCAAATGTATTACT
1 ATCAAATGTATTACT
10809247 A
1 A
10809248 AAGCAAGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
ATCAAATGTATTACT
Found at i:10811513 original size:105 final size:105
Alignment explanation
Indices: 10811366--10811575 Score: 402
Period size: 105 Copynumber: 2.0 Consensus size: 105
10811356 TACAGTTAAT
10811366 TTGGAAACCAACAAAAACTCATCAACCAAGCACCGCTACGGTACCCGTGCAAAATCAAAAATTAT
1 TTGGAAACCAACAAAAACTCATCAACCAAGCACCGCTACGGTACCCGTGCAAAATCAAAAATTAT
10811431 GGATCAAAGATTGGAAAAGTTAGAGTGACTTCAAAAGGAA
66 GGATCAAAGATTGGAAAAGTTAGAGTGACTTCAAAAGGAA
* *
10811471 TTGGAAACCAACAAAAACTCGTCAACCTAGCACCGCTACGGTACCCGTGCAAAATCAAAAATTAT
1 TTGGAAACCAACAAAAACTCATCAACCAAGCACCGCTACGGTACCCGTGCAAAATCAAAAATTAT
10811536 GGATCAAAGATTGGAAAAGTTAGAGTGACTTCAAAAGGAA
66 GGATCAAAGATTGGAAAAGTTAGAGTGACTTCAAAAGGAA
10811576 ATGCAAGATC
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (105 bp):
TTGGAAACCAACAAAAACTCATCAACCAAGCACCGCTACGGTACCCGTGCAAAATCAAAAATTAT
GGATCAAAGATTGGAAAAGTTAGAGTGACTTCAAAAGGAA
Found at i:10833633 original size:44 final size:44
Alignment explanation
Indices: 10833580--10833782 Score: 157
Period size: 44 Copynumber: 4.7 Consensus size: 44
10833570 TTACAGATCT
**
10833580 TATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCC
1 TATCTCCCTGAGATTACAGCGGAACAGATTGAAGCCAGTAATCC
* * *** ** *
10833624 TATTTCCCTGAGATTACAGTGGAACAGATT-AAAATAAAAGATCT
1 TATCTCCCTGAGATTACAGCGGAACAGATTGAAGCCAGTA-ATCC
* ** * * * *
10833668 TATCTCTCTGA-AGTTACAGTAGAATAGA-TCACA-TCA-T-ATCT
1 TATCTCCCTGAGA-TTACAGCGGAACAGATTGA-AGCCAGTAATCC
*
10833709 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCC
1 TATCTCCCTGAGATTACAGCGGAACAGATTGAAGCCAGTAATCC
* *
10833753 TATTTCCCTGAGATTACAGTGGAACAGATT
1 TATCTCCCTGAGATTACAGCGGAACAGATT
10833783 AAAATAAAGG
Statistics
Matches: 122, Mismatches: 28, Indels: 18
0.73 0.17 0.11
Matches are distributed among these distances:
41 26 0.21
42 5 0.04
43 7 0.06
44 83 0.68
45 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAGATTACAGCGGAACAGATTGAAGCCAGTAATCC
Found at i:10833806 original size:129 final size:129
Alignment explanation
Indices: 10833573--10833856 Score: 505
Period size: 129 Copynumber: 2.2 Consensus size: 129
10833563 CGAAGAATTA
*
10833573 CAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
1 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
*
10833638 TACAGTGGAACAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCACAT
66 TACAGTGGAACAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAATAGAATAGATCACAT
*
10833702 CATATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
1 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
* * *
10833767 TACAGTGGAACAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAATAGAGTAGATCGCAT
66 TACAGTGGAACAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAATAGAATAGATCACAT
*
10833831 CAGGTCTTATCTCCCTGAGATTACAG
1 CAGATCTTATCTCCCTGAGATTACAG
10833857 TGGAATAGAC
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 147 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (129 bp):
CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
TACAGTGGAACAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAATAGAATAGATCACAT
Found at i:10833814 original size:44 final size:44
Alignment explanation
Indices: 10833575--10833807 Score: 145
Period size: 44 Copynumber: 5.4 Consensus size: 44
10833565 AAGAATTACA
* ** * ***
10833575 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATT-GAAGCCAG
1 GATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
* * * *
10833618 TAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAA
1 -GATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
* * * * * *
10833663 GATCTTATCTCTCTGA-AGTTACAGTAGAATAGA-TCACAT-CA-
1 GATCTTATCTCCCTGAGA-TTACAGTGGAACAGATTAAAATAAAG
* * * * ***
10833704 TATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAAGCCAG
1 GATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
* * *
10833747 TAATCCTATTTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
*
10833792 GATCTTATCTCTCTGA
1 GATCTTATCTCCCTGA
10833808 AGTTACAATA
Statistics
Matches: 139, Mismatches: 42, Indels: 16
0.71 0.21 0.08
Matches are distributed among these distances:
41 26 0.19
42 5 0.04
43 5 0.04
44 96 0.69
45 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAAG
Found at i:10837672 original size:21 final size:21
Alignment explanation
Indices: 10837648--10837697 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
10837638 TTGGGTATCA
10837648 TTTGGAAACTAAA-TAGAAAAT
1 TTTGGAAACTAAATTA-AAAAT
10837669 TTT-GAAA-TAAATTTAAAAAT
1 TTTGGAAACTAAA-TTAAAAAT
10837689 TTTGGAAAC
1 TTTGGAAAC
10837698 ATGGGTCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 9 0.36
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.34
Consensus pattern (21 bp):
TTTGGAAACTAAATTAAAAAT
Found at i:10852711 original size:17 final size:17
Alignment explanation
Indices: 10852689--10852724 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
10852679 ATAAGTACAC
*
10852689 ATTGTCATTACTTTTTT
1 ATTGTCATTACATTTTT
10852706 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
10852723 AT
1 AT
10852725 GTTAGTGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.06, T:0.61
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:10859989 original size:40 final size:40
Alignment explanation
Indices: 10859905--10860169 Score: 369
Period size: 40 Copynumber: 6.7 Consensus size: 40
10859895 TCGAATGATG
* * * *
10859905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
10859945 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10859985 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10860024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
10860065 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10860104 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
10860145 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
10860170 AACGAGTAGC
Statistics
Matches: 203, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 37 0.18
40 154 0.76
41 12 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10860183 original size:120 final size:119
Alignment explanation
Indices: 10859905--10860176 Score: 361
Period size: 119 Copynumber: 2.3 Consensus size: 119
10859895 TCGAATGATG
** * * * * *
10859905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
10859968 TTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
* **
10860024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
* *
10860089 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
66 GTGCGAGTTACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
*
10860145 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGT
10860177 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
118 1 0.01
119 73 0.54
120 60 0.44
121 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:10860200 original size:159 final size:159
Alignment explanation
Indices: 10859906--10860202 Score: 388
Period size: 159 Copynumber: 1.9 Consensus size: 159
10859896 CGAATGATGT
*
10859906 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
* ** *
10859971 TGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGT
66 TGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAAT
10860036 CCCGAAGGCATTTGTGCGAGTTACTATAA
131 CCCGAAGGCATTTGTGCGAGTTACTATAA
* * * **
10860065 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* * *
10860128 TGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 TGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGT
*
10860190 TAAATTCCGAAGG
126 TAAATCCCGAAGG
10860203 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 3 0.03
159 85 0.71
160 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAAT
CCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:10878141 original size:96 final size:96
Alignment explanation
Indices: 10877976--10878161 Score: 209
Period size: 96 Copynumber: 1.9 Consensus size: 96
10877966 TACACTATGC
* * * * * *
10877976 TGCTCACACAAGCTGTCGAGTATCTGCAACTAATGTCAGGCTTCAGCCATCGGTGGGACATTCAA
1 TGCTCACACAAGCTGTCAAGTATCCGCAACTAATGTCAGACTTCAGCCACCAGTAGGACATTCAA
10878041 GACCAACA-CTCAAGACATGGTAACCTGGGTT
66 GACCAACACCT-AAGACATGGTAACCTGGGTT
*
10878072 TGCTCACACAAGCTGTCAAGTATCCGCAAC-ACATG-CTAGAAC-TCAGCCACCAGTATGACATT
1 TGCTCACACAAGCTGTCAAGTATCCGCAACTA-ATGTC-AG-ACTTCAGCCACCAGTAGGACATT
** * *
10878134 CGGGACCAGCACCTACGACATGGTAACC
63 CAAGACCAACACCTAAGACATGGTAACC
10878162 CTAATGACAT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
95 2 0.03
96 70 0.93
97 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (96 bp):
TGCTCACACAAGCTGTCAAGTATCCGCAACTAATGTCAGACTTCAGCCACCAGTAGGACATTCAA
GACCAACACCTAAGACATGGTAACCTGGGTT
Found at i:10899574 original size:14 final size:14
Alignment explanation
Indices: 10899555--10899584 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10899545 GGTGGAAGAG
*
10899555 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
10899569 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
10899583 GA
1 GA
10899585 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:10903036 original size:17 final size:18
Alignment explanation
Indices: 10903016--10903055 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
10903006 TTATTAATAT
10903016 TTAAATAATTTG-A-AAAA
1 TTAAATAA-TTGAATAAAA
10903033 TTAAATAATTGAATAAAA
1 TTAAATAATTGAATAAAA
10903051 TTAAA
1 TTAAA
10903056 ATTCAAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 9 0.43
18 9 0.43
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
TTAAATAATTGAATAAAA
Found at i:10910679 original size:14 final size:14
Alignment explanation
Indices: 10910660--10910689 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10910650 AGTGAGAGAG
*
10910660 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
10910674 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
10910688 GA
1 GA
10910690 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:10917114 original size:14 final size:14
Alignment explanation
Indices: 10917090--10917132 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
10917080 TATTGATTTA
10917090 TTTCGTTTGTTTATT
1 TTTC-TTTGTTTATT
10917105 TTTCTTTGTTTATT
1 TTTCTTTGTTTATT
10917119 TATT-TTTG-TTATT
1 T-TTCTTTGTTTATT
10917132 T
1 T
10917133 ATTTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.22
14 15 0.56
15 6 0.22
ACGTcount: A:0.09, C:0.05, G:0.09, T:0.77
Consensus pattern (14 bp):
TTTCTTTGTTTATT
Found at i:10917124 original size:17 final size:17
Alignment explanation
Indices: 10917094--10917142 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
10917084 GATTTATTTC
* *
10917094 GTTTGTTTATTTTTCTTT
1 GTTTATTTATTTTT-GTT
10917112 GTTTATTTATTTTTGTT
1 GTTTATTTATTTTTGTT
*
10917129 ATTTATTTATTTTT
1 GTTTATTTATTTTT
10917143 CTCTCTTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (17 bp):
GTTTATTTATTTTTGTT
Found at i:10917132 original size:13 final size:14
Alignment explanation
Indices: 10917095--10917136 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
10917085 ATTTATTTCG
10917095 TTTGTTTATTT-TT
1 TTTGTTTATTTATT
10917108 CTTTGTTTATTTATT
1 -TTTGTTTATTTATT
10917123 TTTG-TTATTTATT
1 TTTGTTTATTTATT
10917136 T
1 T
10917137 ATTTTTCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.37
14 15 0.56
15 2 0.07
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (14 bp):
TTTGTTTATTTATT
Found at i:10921238 original size:4 final size:4
Alignment explanation
Indices: 10921229--10921269 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
10921219 TTCCATAAAT
*
10921229 ATTA ATTA ATTA ACTA ATTA ATTAA ATTA ATTAA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATT-A ATTA ATT-A ATTA ATT
10921270 TCTCAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 25 0.76
5 8 0.24
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (4 bp):
ATTA
Found at i:10921258 original size:9 final size:8
Alignment explanation
Indices: 10921229--10921269 Score: 55
Period size: 9 Copynumber: 4.9 Consensus size: 8
10921219 TTCCATAAAT
10921229 ATTAATTA
1 ATTAATTA
*
10921237 ATTAACTA
1 ATTAATTA
10921245 ATTAATTAA
1 ATTAATT-A
10921254 ATTAATTAA
1 ATTAATT-A
10921263 ATTAATT
1 ATTAATT
10921270 TCTCAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 13 0.43
9 17 0.57
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (8 bp):
ATTAATTA
Found at i:10922648 original size:22 final size:22
Alignment explanation
Indices: 10922620--10922663 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10922610 TCTCAATCCT
10922620 ACCCTATGAATTCTACTGACTA
1 ACCCTATGAATTCTACTGACTA
10922642 ACCCTATGAATTCTACTGACTA
1 ACCCTATGAATTCTACTGACTA
10922664 TGTAGCGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (22 bp):
ACCCTATGAATTCTACTGACTA
Found at i:10924011 original size:16 final size:17
Alignment explanation
Indices: 10923974--10924014 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
10923964 TTATATTTTC
10923974 AGAAATTTAAAATAATT
1 AGAAATTTAAAATAATT
10923991 A-AAATTTAAAA-AA-T
1 AGAAATTTAAAATAATT
10924005 AGGAAATTTA
1 A-GAAATTTA
10924015 GTTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.09
15 2 0.09
16 17 0.77
17 1 0.05
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (17 bp):
AGAAATTTAAAATAATT
Found at i:10938450 original size:21 final size:21
Alignment explanation
Indices: 10938426--10938465 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10938416 CTTCTCGTTC
10938426 TTACGTTTTAATTTTTCTTAA
1 TTACGTTTTAATTTTTCTTAA
* **
10938447 TTACTTTTTTCTTTTTCTT
1 TTACGTTTTAATTTTTCTT
10938466 TTTCTTTTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.70
Consensus pattern (21 bp):
TTACGTTTTAATTTTTCTTAA
Found at i:10943571 original size:3 final size:3
Alignment explanation
Indices: 10943563--10943610 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
10943553 ATTTAAACAC
10943563 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10943611 CATTTCTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10944106 original size:1 final size:1
Alignment explanation
Indices: 10944100--10944124 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
10944090 TATTAGCCAT
10944100 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
10944125 ATTCTANNNN
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:10945835 original size:31 final size:31
Alignment explanation
Indices: 10945777--10945836 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
10945767 TGTGCACGTG
* *
10945777 TATATATAGATTATAAAAATAATAATAATTA
1 TATATATAAATTATAAAAATAAAAATAATTA
10945808 TATATATAAATTATAAAAGA-AAAAATAAT
1 TATATATAAATTATAAAA-ATAAAAATAAT
10945837 AATTACATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (31 bp):
TATATATAAATTATAAAAATAAAAATAATTA
Found at i:10946494 original size:11 final size:11
Alignment explanation
Indices: 10946480--10946504 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10946470 AAATCAACGA
10946480 AAAAACCCTAG
1 AAAAACCCTAG
10946491 AAAAACCCTAG
1 AAAAACCCTAG
10946502 AAA
1 AAA
10946505 GCTTTCGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.24, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAACCCTAG
Found at i:10947531 original size:44 final size:44
Alignment explanation
Indices: 10947480--10947591 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
10947470 GATCTGCTCT
* * *
10947480 CTGCAACTTTAGAGAGATAAGATCTA-TCACTTTAATCCACTCCA
1 CTGCAACTTTAGGGAGATAAGAT-TATTCACCTAAATCCACTCCA
* ** **
10947524 CTGCAACTTTAGGGAGATAGGATTATTGGCCTAAATCTGCTCCA
1 CTGCAACTTTAGGGAGATAAGATTATTCACCTAAATCCACTCCA
10947568 CTGCAACTTTAGGGAGATAAGATT
1 CTGCAACTTTAGGGAGATAAGATT
10947592 TGCCATCTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 2 0.03
44 56 0.97
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (44 bp):
CTGCAACTTTAGGGAGATAAGATTATTCACCTAAATCCACTCCA
Found at i:10947824 original size:50 final size:50
Alignment explanation
Indices: 10947770--10948044 Score: 158
Period size: 50 Copynumber: 5.5 Consensus size: 50
10947760 CCAAGGAAGT
* *
10947770 AAGATTCACCGTTGTGGATTCAATCTTTTTAATTGCAATGTTGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
* * ** ** * * ** ***** **
10947820 AAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACACCGCCAATGAAGT
1 AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
* * **
10947870 AAGATTCGCCTTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
** ** * * ****** *
10947920 AAGATTCACCGTTGTAGCTTCAATCTACTCCACTAC-ACCACCAGGAAAGT
1 AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAA-C
** **
10947970 AAGATTCGGCGTTGCGGCTTCAATC-TTTTAATTGCAATGTTGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
*
10948019 AAGATTCACCGTCGTAGCTTCAATCT
1 AAGATTCACCGTTGTAGCTTCAATCT
10948045 GTTCCATTAC
Statistics
Matches: 145, Mismatches: 77, Indels: 6
0.64 0.34 0.03
Matches are distributed among these distances:
49 30 0.21
50 115 0.79
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (50 bp):
AAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
Found at i:10947861 original size:100 final size:100
Alignment explanation
Indices: 10947729--10948094 Score: 529
Period size: 100 Copynumber: 3.7 Consensus size: 100
10947719 TAAGATTTGT
* * * * * *
10947729 CGTCGTAGCTTCGATCTGTTTCACTAAACCGCCAAGGAAGTAAGATTCACCGTTGTGGATTCAAT
1 CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAAGGAAGTAAGATTCACCGTTGCGGCTTCAAT
*
10947794 CTTTTTAATTGCAATGTTGGGGAAACAAGATTCGC
66 CTTTTTAATTGCAATGTTGGGGAAACAAGATTCAC
* * *
10947829 CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAATGAAGTAAGATTCGCCTTTGCGGCTTCAAT
1 CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAAGGAAGTAAGATTCACCGTTGCGGCTTCAAT
10947894 CTTTTTAATTGCAATGTTGGGGAAACAAGATTCAC
66 CTTTTTAATTGCAATGTTGGGGAAACAAGATTCAC
* * * **
10947929 CGTTGTAGCTTCAATCTACTCCACTACACCACC-AGGAAAGTAAGATTCGGCGTTGCGGCTTCAA
1 CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAAGG-AAGTAAGATTCACCGTTGCGGCTTCAA
10947993 TC-TTTTAATTGCAATGTTGGGGAAACAAGATTCAC
65 TCTTTTTAATTGCAATGTTGGGGAAACAAGATTCAC
* * * * *
10948028 CGTCGTAGCTTCAATCTGTTCCATTACACCGCCAGGGGAGTAAGATTCACCGTTGCAGCTTCAAT
1 CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAAGGAAGTAAGATTCACCGTTGCGGCTTCAAT
10948093 CT
66 CT
10948095 GCTCCACTGT
Statistics
Matches: 237, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
99 88 0.37
100 149 0.63
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (100 bp):
CGTCGTAGCTTCAATCTGCTCCACTACACCGCCAAGGAAGTAAGATTCACCGTTGCGGCTTCAAT
CTTTTTAATTGCAATGTTGGGGAAACAAGATTCAC
Found at i:10956401 original size:19 final size:19
Alignment explanation
Indices: 10956372--10956408 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10956362 AAATAGTATA
10956372 AATAGTAAATAAACAAAATT
1 AATAGTAAATAAA-AAAATT
10956392 AATA-TAAATAAAAAAAT
1 AATAGTAAATAAAAAAAT
10956409 AAACAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
AATAGTAAATAAAAAAATT
Found at i:10956611 original size:99 final size:99
Alignment explanation
Indices: 10956517--10956765 Score: 274
Period size: 100 Copynumber: 2.5 Consensus size: 99
10956507 CATAAGTGAA
* * * *
10956517 ACTATAAAATAAAAAAAATA-AAGGATATA-AAGTGTGTATATAATATATCTATTGAAATTATG-
1 ACTATAAAATAAAAAAAATATAAGGATATACAAGTATGAAAAAAATATATCTATTGAAATTATGA
10956579 AAAAATAAAAGACATACATAAGGTACGAATAAGG
66 AAAAATAAAAGACATACATAAGGTACGAATAAGG
* ** * * * *
10956613 ATTATAAAATTTATAAAATATATGTATATACCAATTATGAAAAAAATATATCTATTGAAATTATG
1 ACTATAAAATAAAAAAAATATAAGGATATA-CAAGTATGAAAAAAATATATCTATTGAAATTATG
*
10956678 AAAAAATAAAAGACATACATAAGGTACGAATATGG
65 AAAAAATAAAAGACATACATAAGGTACGAATAAGG
* ** * * * *
10956713 ATTATAAAATTTATAAAATATATGTATATACCAATTAT-AAAAAAA-ATATCTAT
1 ACTATAAAATAAAAAAAATATAAGGATATA-CAAGTATGAAAAAAATATATCTAT
10956766 GTAAAACTAG
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
96 16 0.12
97 7 0.05
98 8 0.06
99 35 0.26
100 71 0.52
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.31
Consensus pattern (99 bp):
ACTATAAAATAAAAAAAATATAAGGATATACAAGTATGAAAAAAATATATCTATTGAAATTATGA
AAAAATAAAAGACATACATAAGGTACGAATAAGG
Found at i:10956703 original size:100 final size:98
Alignment explanation
Indices: 10956558--10956765 Score: 382
Period size: 100 Copynumber: 2.1 Consensus size: 98
10956548 GTGTGTATAT
10956558 AATATATCTATTGAAATTATGAAAAATAAAAGACATACATAAGGTACGAATAAGGATTATAAAAT
1 AATATATCTATTGAAATTATGAAAAATAAAAGACATACATAAGGTACGAATAAGGATTATAAAAT
10956623 TTATAAAATATATGTATATACCAATTATGAAAAA
66 TTATAAAATATATGTATATACCAATTAT-AAAAA
*
10956657 AATATATCTATTGAAATTATGAAAAAATAAAAGACATACATAAGGTACGAATATGGATTATAAAA
1 AATATATCTATTGAAATTATG-AAAAATAAAAGACATACATAAGGTACGAATAAGGATTATAAAA
10956722 TTTATAAAATATATGTATATACCAATTATAAAAA
65 TTTATAAAATATATGTATATACCAATTATAAAAA
10956756 AA-ATATCTAT
1 AATATATCTAT
10956766 GTAAAACTAG
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
98 8 0.07
99 28 0.26
100 71 0.66
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.31
Consensus pattern (98 bp):
AATATATCTATTGAAATTATGAAAAATAAAAGACATACATAAGGTACGAATAAGGATTATAAAAT
TTATAAAATATATGTATATACCAATTATAAAAA
Found at i:10956950 original size:31 final size:31
Alignment explanation
Indices: 10956892--10956951 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
10956882 TGTGCACGTG
* *
10956892 TATATATAGATTATAAAAATAATAATAATTA
1 TATATATAAATTATAAAAATAAAAATAATTA
10956923 TATATATAAATTATAAAAGA-AAAAATAAT
1 TATATATAAATTATAAAA-ATAAAAATAAT
10956952 AATTACATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (31 bp):
TATATATAAATTATAAAAATAAAAATAATTA
Found at i:10957609 original size:11 final size:11
Alignment explanation
Indices: 10957595--10957619 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10957585 AAATCAACGA
10957595 AAAAACCCTAG
1 AAAAACCCTAG
10957606 AAAAACCCTAG
1 AAAAACCCTAG
10957617 AAA
1 AAA
10957620 GCTTTCGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.24, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAACCCTAG
Found at i:10958871 original size:23 final size:23
Alignment explanation
Indices: 10958845--10958891 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
10958835 TTCGTTAGAA
*
10958845 AAAAAATATACATATACATATAT
1 AAAAAATAGACATATACATATAT
*
10958868 AAAAAATAGATATATACATATAT
1 AAAAAATAGACATATACATATAT
10958891 A
1 A
10958892 TATAGATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAAAATAGACATATACATATAT
Found at i:10958917 original size:31 final size:35
Alignment explanation
Indices: 10958850--10958922 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
10958840 TAGAAAAAAA
*
10958850 ATATACATATACATATATAAAAAATAGATATATAC
1 ATATATATATACATATATAAAAAATAGATATATAC
* *
10958885 ATATATATATAGAT-TATAAAAAA-ATA-AT-TAC
1 ATATATATATACATATATAAAAAATAGATATATAC
10958916 ATATATA
1 ATATATA
10958923 AATTATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 10 0.29
32 2 0.06
33 2 0.06
34 9 0.26
35 12 0.34
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (35 bp):
ATATATATATACATATATAAAAAATAGATATATAC
Found at i:10960169 original size:33 final size:32
Alignment explanation
Indices: 10960108--10960170 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
10960098 AACAAAAATC
* * *
10960108 GGGTCTGGGTTTGGGCCTATTTTGTTGTAATT
1 GGGTCTGGGTTTAGGCCCATTTTATTGTAATT
*
10960140 GGGTTTGGGTTTTAGGCCCATTTTATTGTAA
1 GGGTCTGGG-TTTAGGCCCATTTTATTGTAA
10960171 AAGGACTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 8 0.31
33 18 0.69
ACGTcount: A:0.13, C:0.10, G:0.32, T:0.46
Consensus pattern (32 bp):
GGGTCTGGGTTTAGGCCCATTTTATTGTAATT
Found at i:10960608 original size:45 final size:44
Alignment explanation
Indices: 10960546--10960762 Score: 247
Period size: 45 Copynumber: 4.8 Consensus size: 44
10960536 GATTTGTTTA
*
10960546 TTCAGTCTGCCCCACTGCAATTTCAAGGGGATAAGACTTGCTTTC
1 TTCAGTCTGCCCCACTGCAACTTC-AGGGGATAAGACTTGCTTTC
* * * **
10960591 TTGAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATC
1 TTCAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTGCTTTC
* *
10960636 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTACTTAC
1 TTCAGTCTGCCCCACTGCAACTTCAGG-GGATAAGACTTGCTTTC
* * *
10960681 -TCAGTCTGCTCCACTGCAACTTGAAGGAGATAAGACTTGCTTTC
1 TTCAGTCTGCCCCACTGCAACTT-CAGGGGATAAGACTTGCTTTC
* * **
10960725 TTGAGTCTGCCCCATTGCAACCCCAGTGGGATAAGACT
1 TTCAGTCTGCCCCACTGCAACTTCAG-GGGATAAGACT
10960763 AGATGCGATC
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
44 41 0.29
45 100 0.70
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (44 bp):
TTCAGTCTGCCCCACTGCAACTTCAGGGGATAAGACTTGCTTTC
Found at i:10960720 original size:89 final size:89
Alignment explanation
Indices: 10960546--10960935 Score: 345
Period size: 89 Copynumber: 4.4 Consensus size: 89
10960536 GATTTGTTTA
* * * *
10960546 TTCAGTCTGCCCCACTGCAATTTCAAGGGGATAAGACTTGCTTTCTTGAGTTTGCTCCACTGCAA
1 TTCAGTCTGCCCCACTGCAACTTC-AGGGGATAAGACTTACTTGCTTGAGTCTGCTCCACTGCAA
*
10960611 CTTCAGGGAGATAAGACTTGCCATC
65 CTTCAAGGAGATAAGACTTGCCATC
* *
10960636 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTACTTAC-TCAGTCTGCTCCACTGCAA
1 TTCAGTCTGCCCCACTGCAACTTCAGG-GGATAAGACTTACTTGCTTGAGTCTGCTCCACTGCAA
* **
10960700 CTTGAAGGAGATAAGACTTGCTTTC
65 CTTCAAGGAGATAAGACTTGCCATC
* * ** ** *
10960725 TTGAGTCTGCCCCATTGCAACCCCAGTGGGATAAGAC-TAGATGC--GA-TCTGCT-CTCTGCAA
1 TTCAGTCTGCCCCACTGCAACTTCAG-GGGATAAGACTTACTTGCTTGAGTCTGCTCCACTGCAA
10960785 CTTC-AGAGAGATAAGATCTAT--CA-C
65 CTTCAAG-GAGATAAGA-CT-TGCCATC
* * * * * * * * *
10960809 TTTAATCTGCTCCACTTCAACTTCAGGGAGATAGGA-TTA-TTGGCTTTAATCTGATCCACTACA
1 TTCAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTACTT-GCTTGAGTCTGCTCCACTGCA
* *
10960872 ACTTCAGGGAGATAAGATTTGCCATC
64 ACTTCAAGGAGATAAGACTTGCCATC
* *
10960898 GTCATTCTGCCCCACTGCAACTTCAGGAGGATAAGACT
1 TTCAGTCTGCCCCACTGCAACTTCAGG-GGATAAGACT
10960936 GGATGCGATA
Statistics
Matches: 240, Mismatches: 42, Indels: 36
0.75 0.13 0.11
Matches are distributed among these distances:
83 3 0.01
84 32 0.13
85 19 0.08
86 10 0.04
87 8 0.03
88 25 0.10
89 102 0.43
90 41 0.17
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (89 bp):
TTCAGTCTGCCCCACTGCAACTTCAGGGGATAAGACTTACTTGCTTGAGTCTGCTCCACTGCAAC
TTCAAGGAGATAAGACTTGCCATC
Found at i:10960909 original size:173 final size:174
Alignment explanation
Indices: 10960685--10961020 Score: 469
Period size: 173 Copynumber: 1.9 Consensus size: 174
10960675 ACTTACTCAG
* * * ** * * *
10960685 TCTGCTCCACTGCAACTTGAAGGAGATAAGACTTGCTTTCTTGAGTCTGCCCCATTGCAACCCCA
1 TCTGATCCACTACAACTTCAAGGAGATAAGACTTGCCATCGTCAGTCTGCCCCACTGCAACCCCA
* *
10960750 GTG-GGATAAGACTAGATGCGATCTGCTC-TCTGCAACTTCAGAGAGATAAGATCTATCACTTTA
66 G-GAGGATAAGACTAGATGCGATATGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTA
* *
10960813 ATCTGCTCCACTTCAACTTCAGGGAGATAGGATTATTGGCTTTAA
130 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
* * * **
10960858 TCTGATCCACTACAACTTCAGGGAGATAAGATTTGCCATCGTCATTCTGCCCCACTGCAACTTCA
1 TCTGATCCACTACAACTTCAAGGAGATAAGACTTGCCATCGTCAGTCTGCCCCACTGCAACCCCA
* * *
10960923 GGAGGATAAGACTGGATGCGATATGCTCTTTTGCAACTTCAGAGAGATAAGATCCATCAGTTTAA
66 GGAGGATAAGACTAGATGCGATATGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTAA
10960988 TCCGCTCCACTGCAACTTCAGGGAGATAGGATT
131 TCCGCTCCACTGCAACTTCAGGGAGATAGGATT
10961021 GGTTCTTCTA
Statistics
Matches: 141, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
172 1 0.01
173 76 0.54
174 64 0.45
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (174 bp):
TCTGATCCACTACAACTTCAAGGAGATAAGACTTGCCATCGTCAGTCTGCCCCACTGCAACCCCA
GGAGGATAAGACTAGATGCGATATGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTAA
TCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
Found at i:10960931 original size:45 final size:44
Alignment explanation
Indices: 10960546--10960935 Score: 223
Period size: 45 Copynumber: 8.8 Consensus size: 44
10960536 GATTTGTTTA
* **
10960546 TTCAGTCTGCCCCACTGCAATTTCAAGGGGATAAGACTTGCTTTC
1 TTCAGTCTGCCCCACTGCAACTTC-AGGGGATAAGACTTGCCATC
* * *
10960591 TTGAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATC
1 TTCAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTGCCATC
* *
10960636 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTT-ACTTAC
1 TTCAGTCTGCCCCACTGCAACTTCAGG-GGATAAGACTTGCCAT-C
* * * **
10960681 -TCAGTCTGCTCCACTGCAACTTGAAGGAGATAAGACTTGCTTTC
1 TTCAGTCTGCCCCACTGCAACTT-CAGGGGATAAGACTTGCCATC
* * ** *
10960725 TTGAGTCTGCCCCATTGCAACCCCAGTGGGATAAGACTAG--A--
1 TTCAGTCTGCCCCACTGCAACTTCAG-GGGATAAGACTTGCCATC
* * * *
10960766 TGC-GATCTG-CTCTCTGCAACTTCAGAGAGATAAGATCTAT--CA-C
1 TTCAG-TCTGCCCCACTGCAACTTCAG-GGGATAAGA-CT-TGCCATC
* * * * * * *
10960809 TTTAATCTGCTCCACTTCAACTTCAGGGAGATAGGATTATTGGC-T-
1 TTCAGTCTGCCCCACTGCAACTTCAGGG-GATAAGA--CTTGCCATC
* ** * *
10960854 TT-AATCTGATCCACTACAACTTCAGGGAGATAAGATTTGCCATC
1 TTCAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTGCCATC
* *
10960898 GTCATTCTGCCCCACTGCAACTTCAGGAGGATAAGACT
1 TTCAGTCTGCCCCACTGCAACTTCAGG-GGATAAGACT
10960936 GGATGCGATA
Statistics
Matches: 266, Mismatches: 56, Indels: 46
0.72 0.15 0.12
Matches are distributed among these distances:
40 20 0.08
41 7 0.03
42 5 0.02
43 7 0.03
44 90 0.34
45 134 0.50
46 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
TTCAGTCTGCCCCACTGCAACTTCAGGGGATAAGACTTGCCATC
Found at i:10961005 original size:44 final size:43
Alignment explanation
Indices: 10960770--10961015 Score: 157
Period size: 44 Copynumber: 5.7 Consensus size: 43
10960760 ACTAGATGCG
* * * *
10960770 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTATCACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCCATC-GTTTA
* * * *
10960813 ATCTGCTCCACTTCAACTTCAGGGAGATAGGAT-TATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCCA-TCG-TTTA
* * *
10960857 ATCTGATCCACTACAACTTCAGGGAGATAAGATTTGCCATCG-TCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-CCATCGTTTA
* * **
10960902 TTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTGGATGCG----
1 ATCTGCTCCACTGCAACTTCAGGGA-GATAAGA-TCCAT-CGTTTA
* *** *
10960943 ATATGCTCTTTTGCAACTTCAGAGAGATAAGATCCATCAGTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCCATC-GTTTA
*
10960987 ATCCGCTCCACTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
10961016 GGATTGGTTC
Statistics
Matches: 154, Mismatches: 34, Indels: 29
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.01
40 4 0.03
41 22 0.14
42 2 0.01
43 11 0.07
44 84 0.55
45 26 0.17
46 1 0.01
47 2 0.01
48 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCCATCGTTTA
Found at i:10961221 original size:99 final size:99
Alignment explanation
Indices: 10961031--10961424 Score: 497
Period size: 98 Copynumber: 4.0 Consensus size: 99
10961021 GGTTCTTCTA
* * * * *
10961031 TTTAACTGTAATGTCGGGAAGACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCC
1 TTTAATTGCAATGTCGGGAA-ACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCC
*
10961096 AA-GAAGTAATATTCACCGTTGTGGCCTCAATCTT
65 AAGGAAGTAAGATTCACCGTTGTGGCCTCAATCTT
* * ** * *
10961130 TTTAATTGCAATGTTGGGAAATAAGATTCGTCGTCGTAGCTTCAATCTGTTCCACTGCACCACCA
1 TTTAATTGCAATGTCGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
*
10961195 AGGAAGTAAGATTCACCGCTGTGGCCTCAATCTT
66 AGGAAGTAAGATTCACCGTTGTGGCCTCAATCTT
* * *
10961229 TTTAATTGCAATGTCAGGAAACAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACAGCGCC-
1 TTTAATTGCAATGTCGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
* *
10961293 AGAGAAGTAAGATTCGCCGTTGTGGCTTCAATC-T
66 AG-GAAGTAAGATTCACCGTTGTGGCCTCAATCTT
* * * * * *
10961327 ATTAATTACAATGTCGGGAAACAACATTCACCGTAGCAGCTTCAATCTGTTCCACTACATCGCCA
1 TTTAATTGCAATGTCGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
* * * *
10961392 GGGAAGTAAGATTCGCGGTTGTGGCTTCAATCT
66 AGGAAGTAAGATTCACCGTTGTGGCCTCAATCT
10961425 ATTCCACTGT
Statistics
Matches: 260, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
98 130 0.50
99 130 0.50
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (99 bp):
TTTAATTGCAATGTCGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
AGGAAGTAAGATTCACCGTTGTGGCCTCAATCTT
Found at i:10961274 original size:49 final size:49
Alignment explanation
Indices: 10961031--10961377 Score: 185
Period size: 49 Copynumber: 7.0 Consensus size: 49
10961021 GGTTCTTCTA
* * * *
10961031 TTTAACTGTAATGTCGGGAAGACAAGATTCGCCGTCGTAGCTTCAATCTG
1 TTTAACTGCAATGTCAGGAA-ATAAGATTCACCGTCGTAGCTTCAATCTG
** * * * * * * * * *
10961081 TTCCACTGCACTGCCAAGAAGTAATATTCACCGTTGTGGCCTCAATCTT
1 TTTAACTGCAATGTCAGGAAATAAGATTCACCGTCGTAGCTTCAATCTG
* ** **
10961130 TTTAATTGCAATGTTGGGAAATAAGATTCGTCGTCGTAGCTTCAATCTG
1 TTTAACTGCAATGTCAGGAAATAAGATTCACCGTCGTAGCTTCAATCTG
** **** * * * *
10961179 TTCCACTGCACCACCAAGGAAGTAAGATTCACCG-CTGTGGCCTCAATCTT
1 TTTAACTGCAATGTC-AGGAAATAAGATTCACCGTC-GTAGCTTCAATCTG
* * *
10961229 TTTAATTGCAATGTCAGGAAACAAGATTCACCATCGTAGCTTCAATCTG
1 TTTAACTGCAATGTCAGGAAATAAGATTCACCGTCGTAGCTTCAATCTG
** * ** * * * * *
10961278 TTCCACTACAGCGCCAGAGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-
1 TTTAACTGCAATGTCAG-GAAATAAGATTCACCGTCGTAGCTTCAATCTG
* * * * * * * *
10961327 ATTAATTACAATGTCGGGAAACAACATTCACCGTAGCAGCTTCAATCTG
1 TTTAACTGCAATGTCAGGAAATAAGATTCACCGTCGTAGCTTCAATCTG
10961376 TT
1 TT
10961378 CCACTACATC
Statistics
Matches: 204, Mismatches: 88, Indels: 11
0.67 0.29 0.04
Matches are distributed among these distances:
48 24 0.12
49 108 0.53
50 72 0.35
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (49 bp):
TTTAACTGCAATGTCAGGAAATAAGATTCACCGTCGTAGCTTCAATCTG
Found at i:10961399 original size:197 final size:198
Alignment explanation
Indices: 10961031--10961424 Score: 515
Period size: 197 Copynumber: 2.0 Consensus size: 198
10961021 GGTTCTTCTA
* * * * *
10961031 TTTAACTGTAATGTCGGGAAGACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCC
1 TTTAACTGCAATGTCAGGAAGACAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACTGCC
* * * * * * **
10961096 AAGAAGTAATATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTTGGGAAATAAGATTCGT
66 AAGAAGTAAGATTCACCGTTGTGGCCTCAATCTTATTAATTACAATGTCGGGAAACAACATTCAC
* * *
10961161 CGTCGTAGCTTCAATCTGTTCCACTGCACCACCAAGGAAGTAAGATTCACCGCTGTGGCCTCAAT
131 CGTAGCAGCTTCAATCTGTTCCACTACACCACCAAGGAAGTAAGATTCACCGCTGTGGCCTCAAT
10961226 CTT
196 CTT
*
10961229 TTTAATTGCAATGTCAGGAA-ACAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACAGC-GC
1 TTTAACTGCAATGTCAGGAAGACAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACA-CTGC
* *
10961292 CAGAGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TATTAATTACAATGTCGGGAAACAACATTC
65 CA-AGAAGTAAGATTCACCGTTGTGGCCTCAATCTTATTAATTACAATGTCGGGAAACAACATTC
* * * * * * *
10961356 ACCGTAGCAGCTTCAATCTGTTCCACTACATCGCCAGGGAAGTAAGATTCGCGGTTGTGGCTTCA
129 ACCGTAGCAGCTTCAATCTGTTCCACTACACCACCAAGGAAGTAAGATTCACCGCTGTGGCCTCA
10961421 ATCT
194 ATCT
10961425 ATTCCACTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
197 122 0.73
198 46 0.27
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (198 bp):
TTTAACTGCAATGTCAGGAAGACAAGATTCACCATCGTAGCTTCAATCTGTTCCACTACACTGCC
AAGAAGTAAGATTCACCGTTGTGGCCTCAATCTTATTAATTACAATGTCGGGAAACAACATTCAC
CGTAGCAGCTTCAATCTGTTCCACTACACCACCAAGGAAGTAAGATTCACCGCTGTGGCCTCAAT
CTT
Found at i:10961750 original size:44 final size:44
Alignment explanation
Indices: 10961687--10961838 Score: 125
Period size: 44 Copynumber: 3.5 Consensus size: 44
10961677 ACCTATTCTA
* *
10961687 CTGCTGCT-CAGGGAGACAAGGCTGGTATCTTAGATCCACTTCG
1 CTGCTGATACAGGAAGACAAGGCTGGTATCTTAGATCCACTTCG
** * * * * *
10961730 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCA-A-CCTACTCCA
1 CTGCTGATACAGGAAGACAAG-GCTGGTATCTT-AGATCC-ACTTCG
* * *
10961775 CTGCTGCTGA-A-GAAGACAAGGCTGGTATCTTCGATCTACTTCG
1 CTGCTGAT-ACAGGAAGACAAGGCTGGTATCTTAGATCCACTTCG
10961818 CTGCTGATACAGGAAGACAAG
1 CTGCTGATACAGGAAGACAAG
10961839 ATCTGCTAGT
Statistics
Matches: 80, Mismatches: 20, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
42 1 0.01
43 26 0.32
44 32 0.40
45 19 0.24
46 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (44 bp):
CTGCTGATACAGGAAGACAAGGCTGGTATCTTAGATCCACTTCG
Found at i:10961792 original size:88 final size:88
Alignment explanation
Indices: 10961631--10961872 Score: 335
Period size: 88 Copynumber: 2.8 Consensus size: 88
10961621 GGGTGTCTCC
* * * * *
10961631 GATCTACTTTGCTGCTAGTACAGGAAGGCAAGATCTG-TCATTTTCAACCTATTCTACTGCTGCT
1 GATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCT-ATTTTCAACCTACTCCACTGCTGCT
* *
10961695 CAGGGAGACAAGGCTGGTATCTTA
65 CAAGAAGACAAGGCTGGTATCTTA
* * *
10961719 GATCCACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTG
1 GATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTC
*
10961784 AAGAAGACAAGGCTGGTATCTTC
66 AAGAAGACAAGGCTGGTATCTTA
* *
10961807 GATCTACTTCGCTGCTGATACAGGAAGACAAGATCTGCTAGTTTT-AACCTACTCCATTGCTGCT
1 GATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTA-TTTTCAACCTACTCCACTGCTGCT
10961871 CA
65 CA
10961873 GAGAGATAAA
Statistics
Matches: 136, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
88 131 0.96
89 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (88 bp):
GATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTC
AAGAAGACAAGGCTGGTATCTTA
Found at i:10961822 original size:43 final size:44
Alignment explanation
Indices: 10961687--10961838 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 44
10961677 ACCTATTCTA
* * * *
10961687 CTGCTGCT-CAGGGAGACAAGGCTGGTATCTTAGATCCACTTCG
1 CTGCTGATACAGGAAGACAAGGCTGGTATCTTCGATCTACTTCG
** * * * * * * *
10961730 CTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCA
1 CTGCTGATACAGGAAGACAAG-GCTGGTATCTTCGATCTACTTCG
*
10961775 CTGCTGCTGA-A-GAAGACAAGGCTGGTATCTTCGATCTACTTCG
1 CTGCTGAT-ACAGGAAGACAAGGCTGGTATCTTCGATCTACTTCG
10961818 CTGCTGATACAGGAAGACAAG
1 CTGCTGATACAGGAAGACAAG
10961839 ATCTGCTAGT
Statistics
Matches: 80, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
42 1 0.01
43 29 0.36
44 29 0.36
45 20 0.25
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (44 bp):
CTGCTGATACAGGAAGACAAGGCTGGTATCTTCGATCTACTTCG
Found at i:10963098 original size:7 final size:7
Alignment explanation
Indices: 10963079--10963126 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
10963069 TTAGCCTTTC
10963079 CATTTTT
1 CATTTTT
10963086 -ACTTTTT
1 CA-TTTTT
10963093 CATTTTT
1 CATTTTT
10963100 CATTTTT
1 CATTTTT
10963107 CA-TTTT
1 CATTTTT
*
10963113 CATTCTT
1 CATTTTT
10963120 CATTTTT
1 CATTTTT
10963127 TCACATCACG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 7 0.19
7 28 0.78
8 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:10963098 original size:13 final size:13
Alignment explanation
Indices: 10963088--10963125 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
10963078 CCATTTTTAC
10963088 TTTTTCATTTTTCA
1 TTTTTCA-TTTTCA
10963102 TTTTTCATTTTCA
1 TTTTTCATTTTCA
*
10963115 TTCTTCATTTT
1 TTTTTCATTTT
10963126 TTCACATCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTCATTTTCA
Found at i:10965767 original size:12 final size:12
Alignment explanation
Indices: 10965750--10965775 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10965740 TTCCCTGAGA
10965750 TTCCATCATTTT
1 TTCCATCATTTT
10965762 TTCCATCATTTT
1 TTCCATCATTTT
10965774 TT
1 TT
10965776 ATTGAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCCATCATTTT
Found at i:10969425 original size:13 final size:13
Alignment explanation
Indices: 10969407--10969453 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
10969397 AATGGTATAG
10969407 AAATAATATAAAC
1 AAATAATATAAAC
10969420 AAATAA-ATAAAC
1 AAATAATATAAAC
*
10969432 GAAATTAATATACAAA
1 -AAA-TAATATA-AAC
10969448 AAATAA
1 AAATAA
10969454 CAATAATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 6 0.21
13 9 0.31
14 6 0.21
15 6 0.21
16 2 0.07
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.21
Consensus pattern (13 bp):
AAATAATATAAAC
Found at i:10969753 original size:12 final size:12
Alignment explanation
Indices: 10969736--10969770 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10969726 AAATAAAAAA
10969736 ACATAGATATAT
1 ACATAGATATAT
10969748 ACATAGATATAT
1 ACATAGATATAT
* *
10969760 ATATAAATATA
1 ACATAGATATA
10969771 GAAAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (12 bp):
ACATAGATATAT
Found at i:10969837 original size:23 final size:24
Alignment explanation
Indices: 10969794--10969845 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
10969784 TAGAAAAAAA
* *
10969794 ATATAAATATATATACATATACAT
1 ATATAAATAAATAGACATATACAT
10969818 ATATAAA-AAATAGACATATACAT
1 ATATAAATAAATAGACATATACAT
10969841 ATATA
1 ATATA
10969846 TATAGATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (24 bp):
ATATAAATAAATAGACATATACAT
Found at i:10969837 original size:33 final size:33
Alignment explanation
Indices: 10969789--10969861 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
10969779 TTCGTTAGAA
*
10969789 AAAAAATATAAATAT-ATATACATATACATATAT
1 AAAAAATAGAAATATAATATACATATACAT-TAT
* * *
10969822 AAAAAATAGACATATACATATATATATAGATTAT
1 AAAAAATAGAAATATA-ATATACATATACATTAT
10969856 AAAAAA
1 AAAAAA
10969862 ATAATTACAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 13 0.38
34 9 0.26
35 12 0.35
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (33 bp):
AAAAAATAGAAATATAATATACATATACATTAT
Found at i:10969862 original size:35 final size:32
Alignment explanation
Indices: 10969788--10969864 Score: 82
Period size: 35 Copynumber: 2.3 Consensus size: 32
10969778 ATTCGTTAGA
* *
10969788 AAAAAAATATAAATATATATACATATACATAT
1 AAAAAAATAGAAATACATATACATATACATAT
* *
10969820 ATAAAAAATAGACATATACATATATATATAGATTAT
1 A-AAAAAATAGA-A-ATACATATACATATACA-TAT
10969856 AAAAAAATA
1 AAAAAAATA
10969865 ATTACATATG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 1 0.03
33 9 0.24
34 1 0.03
35 22 0.59
36 4 0.11
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (32 bp):
AAAAAAATAGAAATACATATACATATACATAT
Found at i:10969901 original size:34 final size:38
Alignment explanation
Indices: 10969861--10969931 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 38
10969851 ATTATAAAAA
10969861 AATAATTACA-TA-TGTAAATT-A-TAAAAATA-GAAAC
1 AATAATTACATTATTG-AAATTAATTAAAAATATGAAAC
10969895 AATAATTACATTATTGAAATTAATTAAAAATATGAAA
1 AATAATTACATTATTGAAATTAATTAAAAATATGAAA
10969932 AGGACTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
34 10 0.31
35 7 0.22
36 3 0.09
37 8 0.25
38 4 0.12
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (38 bp):
AATAATTACATTATTGAAATTAATTAAAAATATGAAAC
Found at i:10979220 original size:20 final size:20
Alignment explanation
Indices: 10979195--10979233 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
10979185 CATTTTGGTT
10979195 CTGATGCAAGATGTTTCGAC
1 CTGATGCAAGATGTTTCGAC
10979215 CTGATGCAAGATGTTTCGA
1 CTGATGCAAGATGTTTCGA
10979234 AATCTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (20 bp):
CTGATGCAAGATGTTTCGAC
Found at i:10981043 original size:16 final size:16
Alignment explanation
Indices: 10981022--10981063 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10981012 TTATTAAATT
*
10981022 ATATATTTTAATTATA
1 ATATATTTTAATAATA
10981038 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
10981053 AT-TATGTTTAA
1 ATATAT-TTTAA
10981064 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:10981048 original size:15 final size:15
Alignment explanation
Indices: 10981013--10981054 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10981003 TTAAGAATTT
*
10981013 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10981027 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10981041 TATTTAATAATAAT
1 TATTTAATTATAAT
10981055 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10981289 original size:45 final size:43
Alignment explanation
Indices: 10981189--10981298 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
10981179 TTTTCCATTA
10981189 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
10981228 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
10981273 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
10981299 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:10981300 original size:16 final size:16
Alignment explanation
Indices: 10981279--10981346 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
10981269 GATTTGCTAT
*
10981279 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
10981295 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
10981311 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10981327 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10981343 TACA
1 TACA
10981347 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:10991635 original size:64 final size:64
Alignment explanation
Indices: 10991534--10991666 Score: 187
Period size: 64 Copynumber: 2.1 Consensus size: 64
10991524 TTTGCAAGCC
* * *
10991534 ATTTGTGTTTTATATTATTTGGATGGCATATTTTGACTGAAACTGTTAGAGTTTTTAAATACAT
1 ATTTGTATTTTATATTATTTGGATGGCATATTTTGACTAAAACTATTAGAGTTTTTAAATACAT
* * * *
10991598 ATTTGTATTTTATCTTATTT-GATTGGCATATTTTGACTAAAACTATTGGATTTTTTAAATGCAT
1 ATTTGTATTTTATATTATTTGGA-TGGCATATTTTGACTAAAACTATTAGAGTTTTTAAATACAT
10991662 ATTTG
1 ATTTG
10991667 AGGGCTTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 2 0.03
64 59 0.97
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (64 bp):
ATTTGTATTTTATATTATTTGGATGGCATATTTTGACTAAAACTATTAGAGTTTTTAAATACAT
Found at i:10992898 original size:63 final size:63
Alignment explanation
Indices: 10992799--10992918 Score: 240
Period size: 63 Copynumber: 1.9 Consensus size: 63
10992789 ATCAGAAATT
10992799 AGCAAACTAATTGAAAGTCTACTATGTCATTTATCAAGTCCAATTGGTAGATGATTTTGCTCA
1 AGCAAACTAATTGAAAGTCTACTATGTCATTTATCAAGTCCAATTGGTAGATGATTTTGCTCA
10992862 AGCAAACTAATTGAAAGTCTACTATGTCATTTATCAAGTCCAATTGGTAGATGATTT
1 AGCAAACTAATTGAAAGTCTACTATGTCATTTATCAAGTCCAATTGGTAGATGATTT
10992919 GTCTTGAGCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (63 bp):
AGCAAACTAATTGAAAGTCTACTATGTCATTTATCAAGTCCAATTGGTAGATGATTTTGCTCA
Found at i:10992907 original size:33 final size:33
Alignment explanation
Indices: 10992807--10992907 Score: 77
Period size: 33 Copynumber: 3.2 Consensus size: 33
10992797 TTAGCAAACT
10992807 AATTGAAAGTCTACTATGTCATTTATCAAGTCC
1 AATTGAAAGTCTACTATGTCATTTATCAAGTCC
** * * * * * *
10992840 AATTGGTAGAT-GATTTTGCTCA---AGCAA-ACT
1 AATTGAAAG-TCTACTATG-TCATTTATCAAGTCC
10992870 AATTGAAAGTCTACTATGTCATTTATCAAGTCC
1 AATTGAAAGTCTACTATGTCATTTATCAAGTCC
10992903 AATTG
1 AATTG
10992908 GTAGATGATT
Statistics
Matches: 45, Mismatches: 16, Indels: 14
0.60 0.21 0.19
Matches are distributed among these distances:
29 4 0.09
30 12 0.27
31 4 0.09
32 4 0.09
33 17 0.38
34 4 0.09
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (33 bp):
AATTGAAAGTCTACTATGTCATTTATCAAGTCC
Found at i:10993932 original size:16 final size:16
Alignment explanation
Indices: 10993911--10993954 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
10993901 AATTTGGTTG
*
10993911 AGAAAATTATTTAAGT
1 AGAAAATTAATTAAGT
*
10993927 AGAAAATTAATTAATT
1 AGAAAATTAATTAAGT
10993943 AG--AATTAATTAA
1 AGAAAATTAATTAA
10993955 TAAATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
16 16 0.62
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (16 bp):
AGAAAATTAATTAAGT
Found at i:11008917 original size:14 final size:15
Alignment explanation
Indices: 11008880--11008922 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
11008870 CTTCATCTTC
11008880 TATTTATTTTCTCTCT
1 TATTT-TTTTCTCTCT
*
11008896 T-TTCTTTTC-CTCT
1 TATTTTTTTCTCTCT
11008909 TATTTTTTTCTCTC
1 TATTTTTTTCTCTC
11008923 GTACTTGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 5 0.22
16 1 0.04
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTTTCTCTCT
Found at i:11009602 original size:38 final size:38
Alignment explanation
Indices: 11009471--11009651 Score: 179
Period size: 38 Copynumber: 4.8 Consensus size: 38
11009461 ACACTACGAT
* * *
11009471 TGTTG-ACTTGAAAGCATGTGAAGCATGCCTACTGCGAC
1 TGTTGAAC-TGAAAACATGTTAAGCATGTCTACTGCGAC
* * * * * *
11009509 TGTTGACCTGAAAGCATGTGAAACATGCCTACTACGAC
1 TGTTGAACTGAAAACATGTTAAGCATGTCTACTGCGAC
* *
11009547 TGTTGACCTGAAAACATGTTAAGCATGTCTACTGCAAC
1 TGTTGAACTGAAAACATGTTAAGCATGTCTACTGCGAC
* *
11009585 TGTTGAACT-AAATACATGTTAAGCATGTCTAATGCTA-
1 TGTTGAACTGAAA-ACATGTTAAGCATGTCTACTGCGAC
**
11009622 TCGTTGAACTGATTACATGTTAAGCATGTC
1 T-GTTGAACTGAAAACATGTTAAGCATGTC
11009652 CATTGTTTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 4 0.03
38 119 0.95
39 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (38 bp):
TGTTGAACTGAAAACATGTTAAGCATGTCTACTGCGAC
Found at i:11010283 original size:18 final size:19
Alignment explanation
Indices: 11010260--11010295 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11010250 ATTATAATTT
11010260 ATGTTTT-GTTGAACTGTA
1 ATGTTTTAGTTGAACTGTA
*
11010278 ATGTTTTATTTGAACTGT
1 ATGTTTTAGTTGAACTGT
11010296 GGCATGAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.53
Consensus pattern (19 bp):
ATGTTTTAGTTGAACTGTA
Found at i:11016211 original size:38 final size:37
Alignment explanation
Indices: 11016160--11016256 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 37
11016150 GAACTGAAAG
* * *
11016160 CATGTGAAGCATGTTTACTGTGATTGTTTAATTGAATA
1 CATGTTAAGCATGTTTACTGT-ACTGTTGAATTGAATA
* *
11016198 CATGTTAAGCATGTTTATTGCTACTGTTGAATTGATTA
1 CATGTTAAGCATGTTTACTG-TACTGTTGAATTGAATA
*
11016236 CATGTTAAGCATGTCTACTGT
1 CATGTTAAGCATGTTTACTGT
11016257 TTCTGTATTG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.02
38 49 0.96
39 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (37 bp):
CATGTTAAGCATGTTTACTGTACTGTTGAATTGAATA
Found at i:11016377 original size:16 final size:16
Alignment explanation
Indices: 11016356--11016393 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
11016346 TTTGGTTCGC
11016356 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
11016372 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
11016388 TGTAAT
1 TGTAAT
11016394 AACAAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:11016478 original size:44 final size:44
Alignment explanation
Indices: 11016430--11016569 Score: 144
Period size: 44 Copynumber: 3.1 Consensus size: 44
11016420 TTCTTGATAA
11016430 TAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT
1 TAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT
* ** * *
11016474 TAAATATAATT-TAATAATGAA---ATATAATTTCATAAAATTCTTGATAA
1 TAAAT-T--TTCTTAT-ATGAATTTATATAA-TT--TAAAATAATTAATAT
11016521 TAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT
1 TAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT
11016565 TAAAT
1 TAAAT
11016570 ATAATTTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
44 34 0.45
45 6 0.08
46 6 0.08
47 29 0.39
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (44 bp):
TAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT
Found at i:11016498 original size:18 final size:18
Alignment explanation
Indices: 11016441--11016508 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
11016431 AAATTTTCTT
11016441 ATATGAATTTATATAATTTAA
1 ATAT-AATTTA-ATAA-TTAA
11016462 A-ATAA-TTAAT-ATTAA
1 ATATAATTTAATAATTAA
*
11016477 ATATAATTTAATAATGAA
1 ATATAATTTAATAATTAA
*
11016495 ATATAATTTCATAA
1 ATATAATTTAATAA
11016509 AATTCTTGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 5 0.12
16 5 0.12
17 7 0.17
18 20 0.48
19 2 0.05
20 2 0.05
21 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAATTAA
Found at i:11016559 original size:91 final size:91
Alignment explanation
Indices: 11016404--11016594 Score: 373
Period size: 91 Copynumber: 2.1 Consensus size: 91
11016394 AACAAATTAT
11016404 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATT
1 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATT
11016469 AATATTAAATATAATTTAATAATGAA
66 AATATTAAATATAATTTAATAATGAA
11016495 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATT
1 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATT
*
11016560 AATATTAAATATAATTTAATAATGAT
66 AATATTAAATATAATTTAATAATGAA
11016586 ATATAATTT
1 ATATAATTT
11016595 ATACATTTAA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 99 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATT
AATATTAAATATAATTTAATAATGAA
Found at i:11016589 original size:44 final size:44
Alignment explanation
Indices: 11016450--11016595 Score: 154
Period size: 44 Copynumber: 3.2 Consensus size: 44
11016440 TATATGAATT
11016450 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
1 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
* ** * * * *
11016494 AATATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAAT-T
1 TATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGA
11016541 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
1 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
11016585 TATATAATTTA
1 TATATAATTTA
11016596 TACATTTAAC
Statistics
Matches: 79, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
43 3 0.04
44 35 0.44
45 7 0.09
46 7 0.09
47 24 0.30
48 3 0.04
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (44 bp):
TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
Found at i:11017612 original size:17 final size:17
Alignment explanation
Indices: 11017590--11017625 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
11017580 GCACTTAATA
11017590 TAACTCATATTTCAAAT
1 TAACTCATATTTCAAAT
11017607 TAACTCATATTTCAAAT
1 TAACTCATATTTCAAAT
11017624 TA
1 TA
11017626 CAGCAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
TAACTCATATTTCAAAT
Found at i:11021047 original size:32 final size:32
Alignment explanation
Indices: 11021006--11021076 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
11020996 ATTTTAGAGG
* ** *
11021006 TTGATTAATACAAATCCTTGAAGAAATTAATA
1 TTGATTAATACAAACCCTCAAAGAAATTAAGA
*
11021038 TTGATTAATACAAACCCTCAAAGAAATTAGGA
1 TTGATTAATACAAACCCTCAAAGAAATTAAGA
11021070 TTGATTA
1 TTGATTA
11021077 GAAATTTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (32 bp):
TTGATTAATACAAACCCTCAAAGAAATTAAGA
Found at i:11022762 original size:1 final size:1
Alignment explanation
Indices: 11022758--11022800 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
11022748 TTTTCTGTTC
* * * *
11022758 TTTTTCTTTTTTTTTTCTTTTTTTTTTTCTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11022801 GAAACTCATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:11022763 original size:11 final size:10
Alignment explanation
Indices: 11022747--11022799 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 10
11022737 TGGCCTCTCA
11022747 TTTTTCTGTTC
1 TTTTTCT-TTC
*
11022758 TTTTTCTTTTT
1 TTTTTC-TTTC
11022769 TTTTTCTTT-
1 TTTTTCTTTC
11022778 TTTTT-TTTC
1 TTTTTCTTTC
11022787 -TTTT-TTTC
1 TTTTTCTTTC
11022795 TTTTT
1 TTTTT
11022800 TGAAACTCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
8 11 0.29
9 9 0.24
10 3 0.08
11 14 0.37
12 1 0.03
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:11022770 original size:20 final size:16
Alignment explanation
Indices: 11022758--11022800 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
11022748 TTTTCTGTTC
11022758 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
* *
11022774 CTTTT-TTTTTTTCTT
1 TTTTTCTTTTTTTTTT
11022789 TTTTTCTTTTTT
1 TTTTTCTTTTTT
11022801 GAAACTCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:11022773 original size:12 final size:12
Alignment explanation
Indices: 11022758--11022798 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
11022748 TTTTCTGTTC
11022758 TTTTTC-TTTTT
1 TTTTTCTTTTTT
11022769 TTTTTCTTTTTT
1 TTTTTCTTTTTT
11022781 TTTTTCTTTTTT
1 TTTTTCTTTTTT
11022793 TCTTTT
1 T-TTTT
11022799 TTGAAACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 6 0.21
12 18 0.64
13 4 0.14
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTCTTTTTT
Done.