Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 34 of 182
Found at i:11022778 original size:8 final size:8
Alignment explanation
Indices: 11022758--11022800 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
11022748 TTTTCTGTTC
11022758 TTTTTCTT
1 TTTTTCTT
11022766 TTTTT-TT
1 TTTTTCTT
11022773 TCTTTT-TT
1 T-TTTTCTT
11022781 TTTTTCTT
1 TTTTTCTT
11022789 TTTTTCTT
1 TTTTTCTT
11022797 TTTT
1 TTTT
11022801 GAAACTCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
8 26 0.79
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (8 bp):
TTTTTCTT
Found at i:11022799 original size:6 final size:6
Alignment explanation
Indices: 11022755--11022791 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
11022745 CATTTTTCTG
*
11022755 TTCTTT TTCTTT TT-TTT TTCTTT TTTTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TT
11022792 TTCTTTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (6 bp):
TTCTTT
Found at i:11027084 original size:6 final size:6
Alignment explanation
Indices: 11026946--11027082 Score: 247
Period size: 6 Copynumber: 22.8 Consensus size: 6
11026936 AGAACAAAAA
11026946 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
11026994 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
* * *
11027042 TAATAC TAATAC TAATAC TAATAA TAATAA TAATAA TAATA
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATA
11027083 ATGAAAAGAT
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 130 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (6 bp):
TAATAC
Found at i:11027296 original size:23 final size:22
Alignment explanation
Indices: 11027256--11027299 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
11027246 AAATTATAAA
*
11027256 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
11027278 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
11027300 TGTGAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:11028029 original size:23 final size:22
Alignment explanation
Indices: 11027986--11028043 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
11027976 AATGGGTATC
* *
11027986 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
11028007 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
11028030 TGCATATCATATCT
1 TACAAATCATATCT
11028044 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:11028059 original size:21 final size:21
Alignment explanation
Indices: 11028022--11028076 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
11028012 AATCATATCT
11028022 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
11028041 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
11028062 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
11028077 CCTTGAAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 11 0.32
21 23 0.68
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:11029149 original size:16 final size:16
Alignment explanation
Indices: 11029122--11029156 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
11029112 ATTACCATAT
11029122 TTAAATTAATTTACTTA
1 TTAAATTAATTTA-TTA
11029139 TTAAA-TAATTTATTA
1 TTAAATTAATTTATTA
11029154 TTA
1 TTA
11029157 GATTCAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 7 0.39
17 5 0.28
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
TTAAATTAATTTATTA
Found at i:11034038 original size:42 final size:43
Alignment explanation
Indices: 11033960--11034085 Score: 141
Period size: 42 Copynumber: 2.9 Consensus size: 43
11033950 TCTAGGACGT
* * * *
11033960 TGGCATCAATT-TAAGATTTACGTGTAAGACCATGTCTGGGGCAT
1 TGGCATC-ATTATATGA-TTACGTGTAAGACCCTGTCTGGGACAG
*
11034004 TGGCGTCA-TATATGATTACGTGTAAGACCCTGTCTGGGACAG
1 TGGCATCATTATATGATTACGTGTAAGACCCTGTCTGGGACAG
* *
11034046 TGGCATCATTATTTGATTACATGTAAGACCAC-GTCTGGGA
1 TGGCATCATTATATGATTACGTGTAAGACC-CTGTCTGGGA
11034086 TGTTGGCATT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 32 0.45
43 32 0.45
44 7 0.10
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGGCATCATTATATGATTACGTGTAAGACCCTGTCTGGGACAG
Found at i:11034093 original size:43 final size:42
Alignment explanation
Indices: 11033936--11034094 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
11033926 AATGTGTTAT
* *
11033936 CGTGTAAGACCACATCTAGGACGTTGGCATCA-ATTTAAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCATATTT--GA-TTA
* * * * *
11033980 CGTGTAAGACCATGTCTGGGGCATTGGCGTCATATATGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTA
11034022 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCATTATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCA-TATTTGATTA
* *
11034065 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
11034095 TGTACGAGCC
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 30 0.32
43 35 0.37
44 27 0.28
45 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTA
Found at i:11037733 original size:18 final size:19
Alignment explanation
Indices: 11037710--11037756 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
11037700 TAGCAAATGG
11037710 TGTGAAATGGA-AGTGAAA-
1 TGTGAAATGGATA-TGAAAT
11037728 TGTGAAATGGGATATGAAAT
1 TGTGAAAT-GGATATGAAAT
11037748 TGTGAAATG
1 TGTGAAATG
11037757 AGTTGGGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.31
19 9 0.35
20 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (19 bp):
TGTGAAATGGATATGAAAT
Found at i:11048063 original size:19 final size:19
Alignment explanation
Indices: 11048039--11048083 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11048029 CCTATTTTTT
*
11048039 TGCATT-CATCTCATTCATC
1 TGCATTACATCTCA-TCATA
*
11048058 TGCATTACATGTCATCATA
1 TGCATTACATCTCATCATA
11048077 TGCATTA
1 TGCATTA
11048084 AGTTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATCTCATCATA
Found at i:11055593 original size:45 final size:45
Alignment explanation
Indices: 11055529--11055618 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
11055519 TCCATTTCAT
*
11055529 TCATTTTGTATTTTGGCAAAATGTGCTATCTTGATTAATTTATTC
1 TCATTTTGTATTTTAGCAAAATGTGCTATCTTGATTAATTTATTC
* *
11055574 TCATTTTGTATTTTAGCAAAATTTTCTATCTTGATTAATTTATTC
1 TCATTTTGTATTTTAGCAAAATGTGCTATCTTGATTAATTTATTC
11055619 ATTTCAAGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.53
Consensus pattern (45 bp):
TCATTTTGTATTTTAGCAAAATGTGCTATCTTGATTAATTTATTC
Found at i:11065075 original size:25 final size:25
Alignment explanation
Indices: 11065047--11065101 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
11065037 CTCGCATGAA
*
11065047 CTTCCCGATATATATCTTGATTGAG
1 CTTCCCGATATATAGCTTGATTGAG
*
11065072 CTTCTCGATATATAGCTTGATTGAG
1 CTTCCCGATATATAGCTTGATTGAG
11065097 CTTCC
1 CTTCC
11065102 TTTTATATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (25 bp):
CTTCCCGATATATAGCTTGATTGAG
Found at i:11074520 original size:15 final size:14
Alignment explanation
Indices: 11074500--11074545 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
11074490 CAAACAAAAG
*
11074500 AAAAATTAGAATTTA
1 AAAAATTA-AATTAA
11074515 AAAAATTAAATTAA
1 AAAAATTAAATTAA
* *
11074529 AAAAATAAAAATAA
1 AAAAATTAAATTAA
11074543 AAA
1 AAA
11074546 TAAAAATGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 20 0.71
15 8 0.29
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (14 bp):
AAAAATTAAATTAA
Found at i:11081674 original size:3 final size:3
Alignment explanation
Indices: 11081666--11081694 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11081656 TCTCCTCTAA
11081666 ACT ACT ACT ACT ACT ACT ACT ACT ACT AC
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT AC
11081695 CATAGCTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
ACT
Found at i:11102199 original size:130 final size:130
Alignment explanation
Indices: 11101951--11102587 Score: 513
Period size: 130 Copynumber: 4.9 Consensus size: 130
11101941 AATCAACTTA
* * * * * * * **
11101951 AGAAGATTATTCAGGTTCGTAAATCAATAAACTTAGGCTATCATCA-TAAATCAACAAGCCTTAA
1 AGAAGATTGTTCATGATAGTAAATCAATGAACTTAGACTATGAT-AGTAAATCAATGAGCCTTAA
* * *** * * *
11102015 TAATATCAATTGTGATATTAAATCATCGAGTTGTTCAAAATAGCTATAGAAAATCAGCTAACTCA
65 TAATATCAATTGTGATATTAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCAGCTAACTCA
11102080 TG
130 -G
* * * * *
11102082 -GAAGATTGTTCATTG-TAGTAAATCAATGAACTTA-ACCTGTGATCGTAAACCAGTGAGCCATA
1 AGAAGATTGTTCA-TGATAGTAAATCAATGAACTTAGA-CTATGATAGTAAATCAATGAGCCTTA
* * *
11102144 ATAATATCAACTGTGATATGAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCAACTAACTC
64 ATAATATCAATTGTGATATTAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCAGCTAACTC
*
11102209 AA
129 AG
* * * * * *
11102211 AGAAGATTTTTCATGACAGTAAATCAATAAACTTAGATTATGATTAG-AAATCAACGAACCTTAA
1 AGAAGATTGTTCATGATAGTAAATCAATGAACTTAGACTATGA-TAGTAAATCAATGAGCCTTAA
* * * * * * * *
11102275 TAATACCAATTATGATATTAAATCAACGAGCTATTTGGAGTAGCGTTAGCAAGT-ATGCTAACTT
65 TAATATCAATTGTGATATTAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCA-GCTAACTC
11102339 AG
129 AG
* * *
11102341 AGAAGATTGTTCATGATAGTAAAAT-AATCAACTTAGACTATGATCGTAAATCAATGAGCTTTAA
1 AGAAGATTGTTCATGATAGT-AAATCAATGAACTTAGACTATGATAGTAAATCAATGAGCCTTAA
* ** * * * * * * *
11102405 TAATACCAGCTGTGATCTTAAATCAGTGAAG-TATTTGGAGTAGTGATAGTAAATCAGTTATCGC
65 TAATATCAATTGTGATATTAAATCAGCG-AGCTGTTTGGAGTAGCGATAGTAAATCAGCTAACTC
11102469 AG
129 AG
* * * * * *
11102471 AGAAGATTATTCATGATAGT--ATCAAATGAGCTTAGGCTGTGATAGTAAATTAGCT-AGCCTTA
1 AGAAGATTGTTCATGATAGTAAATC-AATGAACTTAGACTATGATAGTAAATCA-ATGAGCCTTA
* * * * * * *
11102533 ATAATATCAATTGGGATATTAAATCGGTGAACTGTTTGGTGTAGTGATTGTAAAT
64 ATAATATCAATTGTGATATTAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAAT
11102588 AAAATAAGTC
Statistics
Matches: 401, Mismatches: 89, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
127 2 0.00
128 1 0.00
129 76 0.19
130 311 0.78
131 11 0.03
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (130 bp):
AGAAGATTGTTCATGATAGTAAATCAATGAACTTAGACTATGATAGTAAATCAATGAGCCTTAAT
AATATCAATTGTGATATTAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCAGCTAACTCAG
Found at i:11102477 original size:260 final size:260
Alignment explanation
Indices: 11101950--11102491 Score: 589
Period size: 260 Copynumber: 2.1 Consensus size: 260
11101940 AAATCAACTT
* * * *
11101950 AAGAAGATTATTCAGGTTC-GTAAATCAATAAACTTAGGCTATCATCATAAATCAACAAGCCTTA
1 AAGAAGATTATTCATG-ACAGTAAATCAATAAACTTAGACTATCATCAGAAATCAACAAGCCTTA
* * * * *
11102014 ATAATATCAATTGTGATATTAAATCATCGAGTTGTTCAAAATAGCTATAGAAAATCAGCTAACTC
65 ATAATACCAATTATGATATTAAATCAACGAGCTATTCAAAATAGCTATAGAAAATCAGCTAACTC
* * *
11102079 ATGGAAGATTGTTCATTGTAGTAAATCAATGAACTTAACCTGTGATCGTAAACCAGTGAGCCATA
130 ATGGAAGATTGTTCATTGTAGTAAATCAATCAACTTAACCTATGATCGTAAACCAATGAGCCATA
* * *
11102144 ATAATATCAACTGTGATATGAAATCAGCGAGCTGTTTGGAGTAGCGATAGTAAATCAACTAACTC
195 ATAATACCAACTGTGATATGAAATCAGCGAGCTATTTGGAGTAGCGATAGTAAATCAACTAACGC
11102209 A
260 A
* * * *
11102210 AAGAAGATTTTTCATGACAGTAAATCAATAAACTTAGATTATGATTAGAAATCAACGAA-CCTTA
1 AAGAAGATTATTCATGACAGTAAATCAATAAACTTAGACTATCATCAGAAATCAAC-AAGCCTTA
*** * * *
11102274 ATAATACCAATTATGATATTAAATCAACGAGCTATTTGGAGTAGCGT-TAGCAAGT-ATGCTAAC
65 ATAATACCAATTATGATATTAAATCAACGAGCTATTCAAAATAGC-TATAGAAAATCA-GCTAAC
* *
11102337 TTA-GAGAAGATTGTTCA-TGATAGTAAAAT-AATCAACTTAGA-CTATGATCGTAAATCAATGA
128 TCATG-GAAGATTGTTCATTG-TAGT-AAATCAATCAACTTA-ACCTATGATCGTAAACCAATGA
** * * * * * *
11102398 GCTTTAATAATACCAGCTGTGATCTTAAATCAGTGAAG-TATTTGGAGTAGTGATAGTAAATCAG
189 GCCATAATAATACCAACTGTGATATGAAATCAGCG-AGCTATTTGGAGTAGCGATAGTAAATCAA
* *
11102462 TTATCGCA
253 CTAACGCA
* *
11102470 GAGAAGATTATTCATGATAGTA
1 AAGAAGATTATTCATGACAGTA
11102492 TCAAATGAGC
Statistics
Matches: 233, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
259 5 0.02
260 218 0.94
261 10 0.04
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (260 bp):
AAGAAGATTATTCATGACAGTAAATCAATAAACTTAGACTATCATCAGAAATCAACAAGCCTTAA
TAATACCAATTATGATATTAAATCAACGAGCTATTCAAAATAGCTATAGAAAATCAGCTAACTCA
TGGAAGATTGTTCATTGTAGTAAATCAATCAACTTAACCTATGATCGTAAACCAATGAGCCATAA
TAATACCAACTGTGATATGAAATCAGCGAGCTATTTGGAGTAGCGATAGTAAATCAACTAACGCA
Found at i:11106629 original size:51 final size:52
Alignment explanation
Indices: 11106547--11106669 Score: 178
Period size: 51 Copynumber: 2.4 Consensus size: 52
11106537 CATGATAAGT
* *
11106547 GAAGACCATATAGTGTAAGGCCTAACTATTTGCTATGGTATCATATGGC-TA
1 GAAGACCATATAGTGTAAGGCCTAACTATTTGCTATGGCATCATATGGCAGA
11106598 GAAGACCATATAGTGTAAGGCCTAGAC-ATTTGCTATGGCATCATATGGCAAGA
1 GAAGACCATATAGTGTAAGGCCTA-ACTATTTGCTATGGCATCATATGGC-AGA
* *
11106651 GAAGACCACATAGAGTAAG
1 GAAGACCATATAGTGTAAG
11106670 AGTTACTTGG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
51 45 0.69
52 2 0.03
53 18 0.28
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (52 bp):
GAAGACCATATAGTGTAAGGCCTAACTATTTGCTATGGCATCATATGGCAGA
Found at i:11114592 original size:52 final size:52
Alignment explanation
Indices: 11114514--11114616 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
11114504 TGTTCTCCTG
11114514 AATTTAAAAGACCCGGGGAGTTTCACAATACCTATAAAGGTAGGGGATATTA
1 AATTTAAAAGACCCGGGGAGTTTCACAATACCTATAAAGGTAGGGGATATTA
*
11114566 AATTTAAAAGACCCGGGGAGTTTCACAATACCTATAAAGGTATGGGATATT
1 AATTTAAAAGACCCGGGGAGTTTCACAATACCTATAAAGGTAGGGGATATT
11114617 CTTTTTAGCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (52 bp):
AATTTAAAAGACCCGGGGAGTTTCACAATACCTATAAAGGTAGGGGATATTA
Found at i:11122767 original size:21 final size:20
Alignment explanation
Indices: 11122722--11122765 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
11122712 AAAATAAAGC
*
11122722 AAAGAGAAAAGAGATATTGA
1 AAAGAAAAAAGAGATATTGA
11122742 AAAGAAAAATAGAGGATATTGA
1 AAAGAAAAA-AGA-GATATTGA
11122764 AA
1 AA
11122766 GAGAGATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 3 0.14
22 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (20 bp):
AAAGAAAAAAGAGATATTGA
Found at i:11126368 original size:13 final size:12
Alignment explanation
Indices: 11126339--11126386 Score: 69
Period size: 12 Copynumber: 3.8 Consensus size: 12
11126329 ATGCAATTTT
11126339 TTTTTCTTTTCAA
1 TTTTT-TTTTCAA
11126352 TTTTTTTTTCAA
1 TTTTTTTTTCAA
11126364 TTTTTTTTTCGAA
1 TTTTTTTTTC-AA
11126377 CTTTTTTTTT
1 -TTTTTTTTT
11126387 ACGTACCTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
12 17 0.52
13 7 0.21
14 9 0.27
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.75
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:11131000 original size:23 final size:22
Alignment explanation
Indices: 11130949--11131000 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
11130939 CCTCGTCTTT
*
11130949 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
11130971 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
11130994 TTCTTTT
1 TTCTTTT
11131001 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:11132805 original size:11 final size:11
Alignment explanation
Indices: 11132789--11132827 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
11132779 TAGTTTCTCA
*
11132789 AAAAAAACTCG
1 AAAAAAATTCG
11132800 AAAAAAATTC-
1 AAAAAAATTCG
11132810 AAAAAAATTCG
1 AAAAAAATTCG
11132821 AAAAAAA
1 AAAAAAA
11132828 ACTAGTTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.72, C:0.10, G:0.05, T:0.13
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:11132919 original size:15 final size:14
Alignment explanation
Indices: 11132866--11132920 Score: 92
Period size: 14 Copynumber: 3.9 Consensus size: 14
11132856 GGATATCAAG
11132866 TTGTGAAAAAAAAA
1 TTGTGAAAAAAAAA
*
11132880 TTTTGAAAAACAAAA
1 TTGTGAAAAA-AAAA
11132895 TTGTGAAAAAAAAA
1 TTGTGAAAAAAAAA
11132909 TTGTGAAAAAAA
1 TTGTGAAAAAAA
11132921 GAGAGCTAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.62, C:0.02, G:0.13, T:0.24
Consensus pattern (14 bp):
TTGTGAAAAAAAAA
Found at i:11133711 original size:56 final size:56
Alignment explanation
Indices: 11133625--11133737 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
11133615 AGAAAGTACA
11133625 AGTCATGATGTGATCCGGCCCGGGTTAATTGAGTCGTTTCATGTAATTGCCCGATC
1 AGTCATGATGTGATCCGGCCCGGGTTAATTGAGTCGTTTCATGTAATTGCCCGATC
11133681 AGTCATGATGTGATCCGGCCCGGGTTAATTGAGTCGTTTCATGTAATTGCCCGATC
1 AGTCATGATGTGATCCGGCCCGGGTTAATTGAGTCGTTTCATGTAATTGCCCGATC
11133737 A
1 A
11133738 TCGACGAGGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (56 bp):
AGTCATGATGTGATCCGGCCCGGGTTAATTGAGTCGTTTCATGTAATTGCCCGATC
Found at i:11134248 original size:150 final size:150
Alignment explanation
Indices: 11133977--11134276 Score: 573
Period size: 150 Copynumber: 2.0 Consensus size: 150
11133967 AGCTTAAACA
* *
11133977 CCAGAAACGATTCAACACTAAAAAGTGTCACCCCGATTTCTATTCGGTTCAAGGTGGGATTGCGG
1 CCAGAAACGATTCAACACTAAAAAGTGTCACCCCAATTTCTATTCGGTTCAAGGTGGGATTACGG
11134042 AATTGTAGAAGGGTTGAACGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGC
66 AATTGTAGAAGGGTTGAACGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGC
11134107 CACTAGCACGCTAGATAAGT
131 CACTAGCACGCTAGATAAGT
11134127 CCAGAAACGATTCAACACTAAAAAGTGTCACCCCAATTTCTATTCGGTTCAAGGTGGGATTACGG
1 CCAGAAACGATTCAACACTAAAAAGTGTCACCCCAATTTCTATTCGGTTCAAGGTGGGATTACGG
*
11134192 AATTGTAGAAGGGTTGAATGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGC
66 AATTGTAGAAGGGTTGAACGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGC
11134257 CACTAGCACGCTAGATAAGT
131 CACTAGCACGCTAGATAAGT
11134277 TAGATCGAAA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (150 bp):
CCAGAAACGATTCAACACTAAAAAGTGTCACCCCAATTTCTATTCGGTTCAAGGTGGGATTACGG
AATTGTAGAAGGGTTGAACGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGC
CACTAGCACGCTAGATAAGT
Found at i:11138502 original size:39 final size:35
Alignment explanation
Indices: 11138459--11138532 Score: 94
Period size: 35 Copynumber: 2.0 Consensus size: 35
11138449 GCAAGACTTT
* *
11138459 TCACTTTTTTTTCTTCTTTTTTTTAACTCGATTTTTTTG
1 TCACTTCTTTTT-TTCCTTTTTTT---TCGATTTTTTTG
11138498 TCACTTCTTTTTTTCCTTTTTTTTCGATTTTTTTG
1 TCACTTCTTTTTTTCCTTTTTTTTCGATTTTTTTG
11138533 AATTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 12 0.36
38 10 0.30
39 11 0.33
ACGTcount: A:0.08, C:0.16, G:0.05, T:0.70
Consensus pattern (35 bp):
TCACTTCTTTTTTTCCTTTTTTTTCGATTTTTTTG
Found at i:11138541 original size:13 final size:13
Alignment explanation
Indices: 11138525--11138550 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11138515 TTTTTTTCGA
11138525 TTTTTTTGAATTT
1 TTTTTTTGAATTT
11138538 TTTTTTTGAATTT
1 TTTTTTTGAATTT
11138551 CTTCTCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTTTTTGAATTT
Found at i:11139637 original size:42 final size:41
Alignment explanation
Indices: 11139588--11139677 Score: 144
Period size: 41 Copynumber: 2.2 Consensus size: 41
11139578 CTTAATTTTT
*
11139588 TCTTTAGTGAAGAGAGGGATTTCTGTTAATCCTCCTCTTGTA
1 TCTTTAGTG-ACAGAGGGATTTCTGTTAATCCTCCTCTTGTA
*
11139630 TCTTTAGTGACTGAGGGATTTCTGTTAATCCTCCTCTTGTA
1 TCTTTAGTGACAGAGGGATTTCTGTTAATCCTCCTCTTGTA
*
11139671 ACTTTAG
1 TCTTTAG
11139678 CGACCATGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
41 36 0.80
42 9 0.20
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (41 bp):
TCTTTAGTGACAGAGGGATTTCTGTTAATCCTCCTCTTGTA
Found at i:11156435 original size:19 final size:20
Alignment explanation
Indices: 11156411--11156450 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
11156401 AAGCTTAATC
*
11156411 TCAGCTCGTTT-AGCTCAAT
1 TCAGCTCATTTCAGCTCAAT
11156430 TCAGCTCATTTCCAGCTCAAT
1 TCAGCTCATTT-CAGCTCAAT
11156451 AAGCTTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (20 bp):
TCAGCTCATTTCAGCTCAAT
Found at i:11170205 original size:96 final size:96
Alignment explanation
Indices: 11170039--11170222 Score: 233
Period size: 96 Copynumber: 1.9 Consensus size: 96
11170029 CACGATGCTA
* * * * * * *
11170039 CTCACACAAGCTGATAAGTATCTGCAACTAATGCCGGACCTTAGCCATCAGTAGGACATTCAGGA
1 CTCACACAAGCTGACAAGTATCTGCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGA
11170104 CCAGCACCCGAAACATGGTAACCTAGGTCTG
66 CCAGCACCCGAAACATGGTAACCTAGGTCTG
* * * ** * *
11170135 CTCACACAAGCTGACGAGTATTTGCAACAAATGTCAGAACTCAACCATTGGTAAGACATTTAGGG
1 CTCACACAAGCTGACAAGTATCTGCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGA
*
11170200 CCAGCACCTGAAACATGGTAACC
66 CCAGCACCCGAAACATGGTAACC
11170223 CTAATGACAT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (96 bp):
CTCACACAAGCTGACAAGTATCTGCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGA
CCAGCACCCGAAACATGGTAACCTAGGTCTG
Found at i:11177757 original size:23 final size:23
Alignment explanation
Indices: 11177730--11177783 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
11177720 AAATTTGAAT
*
11177730 TTCGAGTTAA-TCGAATTAAGTTA
1 TTCGAGTTAACTCGAA-TAAGTAA
* *
11177753 TTCGAGTCAACTTGAATAAGTAA
1 TTCGAGTTAACTCGAATAAGTAA
11177776 TTCGAGTT
1 TTCGAGTT
11177784 TCGAGTTGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (23 bp):
TTCGAGTTAACTCGAATAAGTAA
Found at i:11185334 original size:79 final size:80
Alignment explanation
Indices: 11185241--11185398 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 80
11185231 CTTTCTTTTC
11185241 TTTTTGCCGCCCAAATCCCTAATCTTCCAATTAAAAATCTGATTGTTTCAATCTACTTACTG-TT
1 TTTTTGCCGCCCAAATCCCTAATCTTCCAATTAAAAATCTGATTGTTTCAATCTACTTACTGTTT
11185305 TGGTGTTCTTGGCAT
66 TGGTGTTCTTGGCAT
*
11185320 TTTTTGCCGTCCAAATCCCTAATCTTCCAATTAAAAATCTGATTGTTTCAATCTACTTACTGTTT
1 TTTTTGCCGCCCAAATCCCTAATCTTCCAATTAAAAATCTGATTGTTTCAATCTACTTACTGTTT
11185385 TGGTGTTCTTGGCA
66 TGGTGTTCTTGGCA
11185399 GATTCGACTT
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
79 61 0.79
80 16 0.21
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.42
Consensus pattern (80 bp):
TTTTTGCCGCCCAAATCCCTAATCTTCCAATTAAAAATCTGATTGTTTCAATCTACTTACTGTTT
TGGTGTTCTTGGCAT
Found at i:11189038 original size:50 final size:51
Alignment explanation
Indices: 11188954--11189053 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 51
11188944 GGCATGGCCG
11188954 GCCACCCCTTGTACAATAACACTTAGATTCATTCTTAAATTTCAGATTTGA
1 GCCACCCCTTGTACAATAACACTTAGATTCATTCTTAAATTTCAGATTTGA
*
11189005 GCCACCCCTTGTAC-ATAACACTTAGATTTATTCTTAAATTTCAGATTTG
1 GCCACCCCTTGTACAATAACACTTAGATTCATTCTTAAATTTCAGATTTG
11189054 TTGAGAGCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 34 0.71
51 14 0.29
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (51 bp):
GCCACCCCTTGTACAATAACACTTAGATTCATTCTTAAATTTCAGATTTGA
Found at i:11191235 original size:129 final size:130
Alignment explanation
Indices: 11191004--11191265 Score: 456
Period size: 129 Copynumber: 2.0 Consensus size: 130
11190994 CCTATATATT
* *
11191004 CCTAAGGTTCAAATGGGGCTCGATAGTAGTTGTAACATCATTGGATTTTTCTGTTGGAGCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAGTAGTCGTAACATCATTGGATTTTTCTGTTGAAGCATCAT
*
11191069 ATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTA-TTAAACATACAATCTTA
66 ATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTATTTAAACATACAAACTTA
*
11191133 CCTAAGGTTCAAATGGGGCTCGATAGTCA-TCGTAACGTCATTGGATTTTTCTGTTGAAGCATCA
1 CCTAAGGTTCAAATGGGGCTCGATAGT-AGTCGTAACATCATTGGATTTTTCTGTTGAAGCATCA
*
11191197 TATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTT
65 TATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTATTTAAACATACAAACTT
11191262 A
130 A
11191263 CCT
1 CCT
11191266 CGATCACAAA
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
129 106 0.84
130 20 0.16
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (130 bp):
CCTAAGGTTCAAATGGGGCTCGATAGTAGTCGTAACATCATTGGATTTTTCTGTTGAAGCATCAT
ATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTATTTAAACATACAAACTTA
Found at i:11196579 original size:23 final size:23
Alignment explanation
Indices: 11196544--11196597 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
11196534 TTATTATTTG
11196544 TTTTGAATATGTC-TAGCTACAACA
1 TTTT-AATATGTCTTAGCT-CAACA
* *
11196568 TTTTAATGTGTCTTTAGCTTAACA
1 TTTTAATATGTC-TTAGCTCAACA
11196592 TTTTAA
1 TTTTAA
11196598 ATACAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 14 0.54
25 5 0.19
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (23 bp):
TTTTAATATGTCTTAGCTCAACA
Found at i:11199754 original size:30 final size:30
Alignment explanation
Indices: 11199704--11199762 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
11199694 TTTGAGATTT
11199704 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
11199734 GGGGCAAAATTGTAATTATGCCAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
11199763 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:11200206 original size:49 final size:50
Alignment explanation
Indices: 11200104--11200281 Score: 135
Period size: 56 Copynumber: 3.5 Consensus size: 50
11200094 GGGAATTAGG
* * ** *
11200104 TCCCATGTAAGACCATGTCTGGGACATGACATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCA---A-G--ATGAGAGC
** * *
11200160 TCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCA-CAAGATGAGAGT
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAGC
* * * * * * *
11200209 TCCC-CGTAAGATCATGTTTAGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAGC
*
11200258 TCCCATGTAAGACCATATCTGGGA
1 TCCCATGTAAGACCATGTCTGGGA
11200282 TATGACATTG
Statistics
Matches: 99, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
48 25 0.25
49 23 0.23
50 14 0.14
51 1 0.01
52 1 0.01
55 1 0.01
56 34 0.34
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAGC
Found at i:11200245 original size:48 final size:49
Alignment explanation
Indices: 11200152--11200273 Score: 111
Period size: 48 Copynumber: 2.5 Consensus size: 49
11200142 TATTGAGGTT
* * ** *
11200152 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACAAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACAAG
* * * * *
11200201 ATGAGAGTTCCC-CGTAAGATCATGTTTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCA-CAAG
** *
11200250 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCACGTAAGACCAT
11200274 ATCTGGGATA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
48 25 0.44
49 23 0.40
50 9 0.16
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACAAG
Found at i:11200570 original size:20 final size:20
Alignment explanation
Indices: 11200545--11200583 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
11200535 TGAGTTATTT
11200545 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
11200565 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
11200584 GAAGAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:11200592 original size:20 final size:20
Alignment explanation
Indices: 11200554--11200592 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11200544 TAAGTAAGCA
*
11200554 AGTAAGTAAACAAGTAAGAG
1 AGTAAGTAAACAAGAAAGAG
*
11200574 AGTAAGTAAAGAAGAAAGA
1 AGTAAGTAAACAAGAAAGA
11200593 AAGATCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.26, T:0.13
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGAG
Found at i:11202442 original size:87 final size:87
Alignment explanation
Indices: 11202336--11202599 Score: 339
Period size: 87 Copynumber: 3.0 Consensus size: 87
11202326 TAGTGCATTT
* ** * * *
11202336 ATATTTGATGGTCGTCACCATCCCCTTTCATAACCAATAGTCAAAACTATCCCTTTTCATAATTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
* ** *
11202401 ATAGTCAAAACTATCCCTTTTC
66 ATGGTCATCACCATCCCTTTTC
* * * * * ** *
11202423 ATATTTAATGATCGTCACCATCCCTTTTCATAGTTGCTGGTCGTCACCATCCCTTTTCATATTTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
*
11202488 ATGGTCATCACCATCCCTATTC
66 ATGGTCATCACCATCCCTTTTC
*
11202510 ATATTTGATGGTCGTTACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
*
11202575 ATGGTCGTCACCATCCCTTTTC
66 ATGGTCATCACCATCCCTTTTC
11202597 ATA
1 ATA
11202600 GTCGATAGTC
Statistics
Matches: 147, Mismatches: 30, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 147 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (87 bp):
ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
ATGGTCATCACCATCCCTTTTC
Found at i:11202445 original size:29 final size:29
Alignment explanation
Indices: 11202336--11202599 Score: 267
Period size: 29 Copynumber: 9.1 Consensus size: 29
11202326 TAGTGCATTT
*
11202336 ATATTTGATGGTCGTCACCATCCCCTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
**** * *** *
11202365 ATAACCAATAGTCAAAACTATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
* * *** *
11202394 ATAATTGATAGTCAAAACTATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
* *
11202423 ATATTTAATGATCGTCACCATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
* *
11202452 ATAGTTGCTGGTCGTCACCATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
* *
11202481 ATATTTGATGGTCATCACCATCCCTATTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
*
11202510 ATATTTGATGGTCGTTACCATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
* * * ** *
11202539 ATAGTCGATAGTCGAAACTATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
11202568 ATATTTGATGGTCGTCACCATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTC
11202597 ATA
1 ATA
11202600 GTCGATAGTC
Statistics
Matches: 191, Mismatches: 44, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 191 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (29 bp):
ATATTTGATGGTCGTCACCATCCCTTTTC
Found at i:11205885 original size:19 final size:17
Alignment explanation
Indices: 11205861--11205903 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
11205851 TAGGCCTCGT
11205861 TGGGCCGAAATGGGCTGTG
1 TGGGCC-AAATGGGCT-TG
* *
11205880 TGGGCCTAGTGGGCTTG
1 TGGGCCAAATGGGCTTG
11205897 TGGGCCA
1 TGGGCCA
11205904 TACGGATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.12, C:0.19, G:0.47, T:0.23
Consensus pattern (17 bp):
TGGGCCAAATGGGCTTG
Found at i:11206285 original size:27 final size:27
Alignment explanation
Indices: 11206255--11206539 Score: 223
Period size: 27 Copynumber: 10.6 Consensus size: 27
11206245 CTAATATTTA
* * *
11206255 TAAAATGACCATAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTATAAGG
* * * *
11206282 TAAAATGATCGTAATACCCTTGTAGGG
1 TAAAATGACCGTAATACCCCTATAAGG
* * * *
11206309 TAAAATGATCGAAAAACCTCC-ATAGGG
1 TAAAATGACCGTAATACC-CCTATAAGG
* * * *
11206336 TAAAATGATCGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTATAAGG
* **
11206363 TAAAATGATCGTAATGGCCCTATAAGG
1 TAAAATGACCGTAATACCCCTATAAGG
*
11206390 GAAAATGACCGTAATACCCCTAT-AGG
1 TAAAATGACCGTAATACCCCTATAAGG
** * * *
11206416 ATAAAATGACCAAAAAACCCCCATAGGG
1 -TAAAATGACCGTAATACCCCTATAAGG
* *
11206444 TAAAATGACCGTAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTATAAGG
* * *
11206471 TAAAATGACCATAATACCCCCATAGGG
1 TAAAATGACCGTAATACCCCTATAAGG
* ** * *
11206498 TTAAATGACCAAAATACCCGTGTAAGG
1 TAAAATGACCGTAATACCCCTATAAGG
*
11206525 TAAAATGATCGTAAT
1 TAAAATGACCGTAAT
11206540 GCCTCTAGAG
Statistics
Matches: 206, Mismatches: 48, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.02
27 198 0.96
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTATAAGG
Found at i:11206341 original size:54 final size:54
Alignment explanation
Indices: 11206280--11206535 Score: 273
Period size: 54 Copynumber: 4.7 Consensus size: 54
11206270 GCCCCTGTAA
* * *
11206280 GGTAAAATGATCGTAATACCCTTGTAGGGTAAAATGATCGAAAAACCTCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGAAAAACCCCCATAG
* * * *** *
11206334 GGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGATCGTAATGGCCCTATAAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGAAAAACCCCCAT-AG
* * * *
11206389 GG-AAAATGACCGTAATACCCCTATAGGATAAAATGACCAAAAAACCCCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGAAAAACCCCCATAG
* * * *
11206442 GGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGA-CCATAATACCCCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGA-AAAACCCCCATAG
* ** * *
11206496 GGTTAAATGACCAAAATACCCGTGTAAGGTAAAATGATCG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCG
11206536 TAATGCCTCT
Statistics
Matches: 167, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
53 6 0.04
54 156 0.93
55 5 0.03
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (54 bp):
GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGAAAAACCCCCATAG
Found at i:11206541 original size:81 final size:81
Alignment explanation
Indices: 11206255--11206542 Score: 326
Period size: 81 Copynumber: 3.6 Consensus size: 81
11206245 CTAATATTTA
* * * * * *
11206255 TAAAATGACCATAATGCCCCTGTAAGGTAAAATGATCGTAATACCCTTGTAGGGTAAAATGATCG
1 TAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGA-CC
* *
11206320 A-AAAACCTCCATAGGG
65 ATAATACCCCCATAGGG
* ** * * * * * *
11206336 TAAAATGATCGTAATGCCCCTGTAGGGTAAAATGATCGTAATGGCCCTATAAGGGAAAATGACCG
1 TAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCA
* *
11206401 TAATACCCCTATAGGA
66 TAATACCCCCATAGGG
* ** * *
11206417 TAAAATGACCAAAAAACCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGACCA
1 TAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCA
11206482 TAATACCCCCATAGGG
66 TAATACCCCCATAGGG
* *
11206498 TTAAATGACCAAAATACCCGTGTAAGGTAAAATGATCGTAATGCC
1 TAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCC
11206543 TCTAGAGGGT
Statistics
Matches: 170, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
80 1 0.01
81 169 0.99
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (81 bp):
TAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCA
TAATACCCCCATAGGG
Found at i:11206552 original size:54 final size:54
Alignment explanation
Indices: 11206392--11206559 Score: 160
Period size: 54 Copynumber: 3.1 Consensus size: 54
11206382 CTATAAGGGA
** * * * * *
11206392 AAATGACCGTAATACCCCTAT-AGGATAAAATGACCAAAAAACCCCCATAGGGTA
1 AAATGACCAAAATACCCCTGTAAGG-TAAAATGACCATAATACCCCCAGAGGGTT
** * *
11206446 AAATGACCGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCCATAGGGTT
1 AAATGACCAAAATACCCCTGTAAGGTAAAATGACCATAATACCCCCAGAGGGTT
* * * * * *
11206500 AAATGACCAAAATACCCGTGTAAGGTAAAATGATCGTAATGCCTCTAGAGGG-T
1 AAATGACCAAAATACCCCTGTAAGGTAAAATGACCATAATACCCCCAGAGGGTT
11206553 AAATGAC
1 AAATGAC
11206560 TATTTTGCCA
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 8 0.08
54 87 0.89
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.20
Consensus pattern (54 bp):
AAATGACCAAAATACCCCTGTAAGGTAAAATGACCATAATACCCCCAGAGGGTT
Found at i:11206601 original size:24 final size:24
Alignment explanation
Indices: 11206569--11206674 Score: 126
Period size: 24 Copynumber: 4.4 Consensus size: 24
11206559 CTATTTTGCC
* *
11206569 ATGATTGATTTGTCCGTGATGTAG-
1 ATGACTGATTTGTCTGTGAT-TAGT
*
11206593 ATGACTGATTTGTCTGTGATTTA-A
1 ATGACTGATTTGTCTGTGA-TTAGT
* *
11206617 ATGACTGATTTGTCTGTTATTGGT
1 ATGACTGATTTGTCTGTGATTAGT
*
11206641 ATGACTGATTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTGTGATTAGT
11206665 ATGACTGATT
1 ATGACTGATT
11206675 CTGAGCATGG
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 2 0.03
24 69 0.96
25 1 0.01
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTAGT
Found at i:11206786 original size:27 final size:27
Alignment explanation
Indices: 11206738--11206802 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
11206728 ATGGAGGAAG
11206738 TACTG-TACTGGTGGCTCTGCCACA-A
1 TACTGTTACTGGTGGCTCTGCCACATA
*
11206763 TCACTGTTACTGGTGGGT-TGGCCACATA
1 T-ACTGTTACTGGTGGCTCT-GCCACATA
*
11206791 TACTATTACTGG
1 TACTGTTACTGG
11206803 CAACTTTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.15
27 26 0.76
28 2 0.06
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTCTGCCACATA
Found at i:11206822 original size:26 final size:26
Alignment explanation
Indices: 11206790--11206843 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
11206780 TTGGCCACAT
*
11206790 ATACTATTACTGGCAACTTTGTTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
* *
11206816 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
11206842 AT
1 AT
11206844 GCTACTGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAACTTTGCTGCG
Found at i:11206855 original size:26 final size:26
Alignment explanation
Indices: 11206800--11206855 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
11206790 ATACTATTAC
* * *
11206800 TGGCAACTTTGTTGCGATACTATTGC
1 TGGCAACTTTGCTGCGATACTACTGA
* *
11206826 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAACTTTGCTGCGATACTACTGA
11206852 TGGC
1 TGGC
11206856 TTTGTGCCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (26 bp):
TGGCAACTTTGCTGCGATACTACTGA
Found at i:11207161 original size:34 final size:34
Alignment explanation
Indices: 11207123--11207219 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 34
11207113 TAAAGTCATG
11207123 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
* *
11207157 CATTA---AA--TT-AAGTCAAGTT-AGTTT--A-
1 CATTATGTAACTTTCATGT-TAGTTAAGTTTGCAT
11207182 -ATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
11207215 CATTA
1 CATTA
11207220 AATTAAGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 24
0.63 0.05 0.32
Matches are distributed among these distances:
24 4 0.09
26 1 0.02
27 2 0.04
28 8 0.17
29 12 0.26
30 8 0.17
31 2 0.04
32 1 0.02
34 9 0.19
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (34 bp):
CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
Found at i:11207202 original size:25 final size:25
Alignment explanation
Indices: 11207173--11207267 Score: 66
Period size: 25 Copynumber: 3.5 Consensus size: 25
11207163 ATTAAGTCAA
11207173 GTTAGTTTAATTATGTAACTTTCAT
1 GTTAGTTTAATTATGTAACTTTCAT
* * *
11207198 GTTAG-TTAAGTTTGCATCATTAAATTAAGTCAA
1 GTTAGTTTAA--TT--AT--GTAACTT---TCAT
11207231 GTTAGTTTAATTATGTAACTTTCAT
1 GTTAGTTTAATTATGTAACTTTCAT
*
11207256 GTTAGTTAAATT
1 GTTAGTTTAATT
11207268 TGCATTTCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 20
0.66 0.09 0.25
Matches are distributed among these distances:
24 4 0.08
25 19 0.36
26 2 0.04
28 7 0.13
30 7 0.13
32 2 0.04
33 8 0.15
34 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.47
Consensus pattern (25 bp):
GTTAGTTTAATTATGTAACTTTCAT
Found at i:11207214 original size:58 final size:58
Alignment explanation
Indices: 11207124--11207272 Score: 289
Period size: 58 Copynumber: 2.6 Consensus size: 58
11207114 AAAGTCATGC
11207124 ATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTA
1 ATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTA
11207182 ATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTA
1 ATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTA
*
11207240 ATTATGTAACTTTCATGTTAGTTAAATTTGCAT
1 ATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
11207273 TTCAAAACCA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
58 90 1.00
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (58 bp):
ATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTA
Found at i:11208589 original size:22 final size:21
Alignment explanation
Indices: 11208559--11208623 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
11208549 ATTACTGTAC
*
11208559 TTATGGCTTGTAGCTATTCTGT
1 TTATAGCTT-TAGCTATTCTGT
*
11208581 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTT-TAGCTATTCTGT
* *
11208603 TTACAGCTCTTAGCCATTCTG
1 TTATAGCT-TTAGCTATTCTG
11208624 GTTACTGGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
22 35 0.97
23 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (21 bp):
TTATAGCTTTAGCTATTCTGT
Found at i:11209093 original size:20 final size:20
Alignment explanation
Indices: 11209070--11209123 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
11209060 AGTTTTTCCC
*
11209070 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
11209090 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
11209110 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
11209124 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:11209105 original size:30 final size:30
Alignment explanation
Indices: 11209070--11209143 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
11209060 AGTTTTTCCC
11209070 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
11209100 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
11209130 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
11209144 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:11209133 original size:20 final size:20
Alignment explanation
Indices: 11209070--11209134 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
11209060 AGTTTTTCCC
* * * *
11209070 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
11209090 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
11209109 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
11209130 AGCTC
1 AGCTC
11209135 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:11214916 original size:40 final size:40
Alignment explanation
Indices: 11214850--11215030 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
11214840 AATTATTGAA
* * *
11214850 TGATTGCACTTACATGCACCTGTTTGTACTTCGATACCTC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGATACCTC
* * * * *
11214890 TAATTGCACTTATGTGCCCCTATTTGTACTGCGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGATACCTC
*
11214930 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTA-CTCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGATACCT-C
* * * * *
11214970 TGATTGAACTTATGTGCCCCTGTTTGCACTTTGATAACC-C
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGAT-ACCTC
* *
11215010 TGGTTGCACTTCCGTGCCCCT
1 TGATTGCACTTACGTGCCCCT
11215031 GGTTATACTT
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 113 0.97
41 1 0.01
42 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTTCGATACCTC
Found at i:11214983 original size:80 final size:80
Alignment explanation
Indices: 11214850--11215052 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
11214840 AATTATTGAA
* * * *
11214850 TGATTGCACTTACATGCACCTGTTTGTACTTCGATACCTCTAATTGCACTTATGTGCCCCTATTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCTCTAATTGAACTTATGTGCCCCTATTT
* * *
11214915 GTACTGCGGTACCCC
66 GCACTGCGATAACCC
* * *
11214930 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTA-CTCCTGATTGAACTTATGTGCCCCTGTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCT-CTAATTGAACTTATGTGCCCCTATT
**
11214994 TGCACTTTGATAACCC
65 TGCACTGCGATAACCC
* * * * *
11215010 TGGTTGCACTTCCGTGCCCCTGGTTATACTTCGGTAACTCTAA
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCTCTAA
11215053 ATCAAATATT
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 99 0.96
81 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (80 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCTCTAATTGAACTTATGTGCCCCTATTT
GCACTGCGATAACCC
Found at i:11215034 original size:20 final size:20
Alignment explanation
Indices: 11214850--11215031 Score: 70
Period size: 20 Copynumber: 9.1 Consensus size: 20
11214840 AATTATTGAA
* *
11214850 TGATTGCACTTACATGCACC
1 TGATTGCACTTACGTGCCCC
* * * *
11214870 TGTTTGTACTT-CGATACCTC
1 TGATTGCACTTACG-TGCCCC
* *
11214890 TAATTGCACTTATGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
11214910 T-ATTTGTAC-TGCGGTACCCC
1 TGA-TTGCACTTAC-GTGCCCC
11214930 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
11214950 T-ATTTGTACTT-CGGTACTCC
1 TGA-TTGCACTTAC-GTGCCCC
* *
11214970 TGATTGAACTTATGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * **
11214990 TGTTTGCACTT-TGATAACCC
1 TGATTGCACTTACG-TGCCCC
* *
11215010 TGGTTGCACTTCCGTGCCCC
1 TGATTGCACTTACGTGCCCC
11215030 TG
1 TG
11215032 GTTATACTTC
Statistics
Matches: 116, Mismatches: 34, Indels: 24
0.67 0.20 0.14
Matches are distributed among these distances:
19 7 0.06
20 103 0.89
21 6 0.05
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.36
Consensus pattern (20 bp):
TGATTGCACTTACGTGCCCC
Found at i:11216139 original size:13 final size:13
Alignment explanation
Indices: 11216121--11216156 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
11216111 TAGTTTCTTC
*
11216121 AAAAAAAATTTGA
1 AAAAAAAATTTCA
11216134 AAAAAAAATTTCA
1 AAAAAAAATTTCA
11216147 AAAAAAAATT
1 AAAAAAAATT
11216157 GGTTTGCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAAAAAATTTCA
Found at i:11216378 original size:13 final size:13
Alignment explanation
Indices: 11216360--11216395 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
11216350 TAGTTTCTTC
*
11216360 AAAAAAAATTTGA
1 AAAAAAAATTTCA
11216373 AAAAAAAATTTCA
1 AAAAAAAATTTCA
11216386 AAAAAAAATT
1 AAAAAAAATT
11216396 GGTTTCCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAAAAAATTTCA
Found at i:11216384 original size:239 final size:239
Alignment explanation
Indices: 11215965--11216408 Score: 879
Period size: 239 Copynumber: 1.9 Consensus size: 239
11215955 TATTACCTTT
11215965 TTTAAATCGAAACGATTCTATTCTACTCAGTTCACGATCGGGCATCACTAACGACTCGAATCAAT
1 TTTAAATCGAAACGATTCTATTCTACTCAGTTCACGATCGGGCATCACTAACGACTCGAATCAAT
11216030 CACGAAACGAGTTCCGATCAAATTGGTATCAGAGCTAACGAATTTGGAGTAAGAATCGACATTGT
66 CACGAAACGAGTTCCGATCAAATTGGTATCAGAGCTAACGAATTTGGAGTAAGAATCGACATTGT
11216095 CGGCAATACGGTATAGTAGTTTCTTCAAAAAAAATTTGAAAAAAAAATTTCAAAAAAAAATTGGT
131 CGGCAATACGGTATAGTAGTTTCTTCAAAAAAAATTTGAAAAAAAAATTTCAAAAAAAAATTGGT
*
11216160 TTGCTTTCAACATTTGTTTGAAGCCATTATTTCTATTTTTTTCC
196 TTCCTTTCAACATTTGTTTGAAGCCATTATTTCTATTTTTTTCC
11216204 TTTAAATCGAAACGATTCTATTCTACTCAGTTCACGATCGGGCATCACTAACGACTCGAATCAAT
1 TTTAAATCGAAACGATTCTATTCTACTCAGTTCACGATCGGGCATCACTAACGACTCGAATCAAT
11216269 CACGAAACGAGTTCCGATCAAATTGGTATCAGAGCTAACGAATTTGGAGTAAGAATCGACATTGT
66 CACGAAACGAGTTCCGATCAAATTGGTATCAGAGCTAACGAATTTGGAGTAAGAATCGACATTGT
11216334 CGGCAATACGGTATAGTAGTTTCTTCAAAAAAAATTTGAAAAAAAAATTTCAAAAAAAAATTGGT
131 CGGCAATACGGTATAGTAGTTTCTTCAAAAAAAATTTGAAAAAAAAATTTCAAAAAAAAATTGGT
11216399 TTCCTTTCAA
196 TTCCTTTCAA
11216409 ACTCAAGAGA
Statistics
Matches: 204, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 204 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (239 bp):
TTTAAATCGAAACGATTCTATTCTACTCAGTTCACGATCGGGCATCACTAACGACTCGAATCAAT
CACGAAACGAGTTCCGATCAAATTGGTATCAGAGCTAACGAATTTGGAGTAAGAATCGACATTGT
CGGCAATACGGTATAGTAGTTTCTTCAAAAAAAATTTGAAAAAAAAATTTCAAAAAAAAATTGGT
TTCCTTTCAACATTTGTTTGAAGCCATTATTTCTATTTTTTTCC
Found at i:11216455 original size:16 final size:15
Alignment explanation
Indices: 11216432--11216469 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
11216422 GATATCAAGT
*
11216432 TGAAAAAAAATTTCG
1 TGAAAAAAAAATTCG
11216447 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
11216462 TGAAAAAA
1 TGAAAAAA
11216470 GAAGAAGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.61, C:0.05, G:0.13, T:0.21
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:11217896 original size:51 final size:51
Alignment explanation
Indices: 11217834--11217935 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
11217824 TTTCACACTC
*
11217834 AAAGTGACTACTCAACATCTCCTTAATTGCTGGTAATTTTTCAGCCATAGT
1 AAAGTGACTACTCAACATCTCCTTAATTGCTGGTAATTTTTCAGCAATAGT
*
11217885 AAAGTGACTACTCAACATCTTCTTAATTGCTGGTAATTTTTCAGCAATAGT
1 AAAGTGACTACTCAACATCTCCTTAATTGCTGGTAATTTTTCAGCAATAGT
11217936 TGCCAATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (51 bp):
AAAGTGACTACTCAACATCTCCTTAATTGCTGGTAATTTTTCAGCAATAGT
Found at i:11218481 original size:10 final size:10
Alignment explanation
Indices: 11218466--11218527 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
11218456 TTTGAACCAT
*
11218466 TACCAATTCG
1 TACCAATTCA
*
11218476 TACCAAATACCA
1 TACC-AAT-TCA
*
11218488 TACCATTTCA
1 TACCAATTCA
11218498 TACCAATTGCA
1 TACCAATT-CA
* *
11218509 TACCATTTCG
1 TACCAATTCA
11218519 TACCAATTC
1 TACCAATTC
11218528 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.31, G:0.05, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:11218512 original size:21 final size:21
Alignment explanation
Indices: 11218486--11218526 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11218476 TACCAAATAC
11218486 CATACCATTTCATACCAATTG
1 CATACCATTTCATACCAATTG
*
11218507 CATACCATTTCGTACCAATT
1 CATACCATTTCATACCAATT
11218527 CCCAAATACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (21 bp):
CATACCATTTCATACCAATTG
Found at i:11220991 original size:40 final size:40
Alignment explanation
Indices: 11220946--11221091 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 40
11220936 CTAAGTGACC
*
11220946 ATATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
11220986 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*** * *
11221026 ATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
11221066 ATATCCGGGCT-AGGTCCGGAAGAGCA
1 ATATCCGGACTAAGTTCC-GAAGAGCA
11221092 ATCATGCTGG
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 87 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
Found at i:11224709 original size:49 final size:49
Alignment explanation
Indices: 11224638--11225007 Score: 437
Period size: 49 Copynumber: 7.3 Consensus size: 49
11224628 CAGCCAAGAC
*
11224638 AGTGTATATATGT--GATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
11224685 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCC--------G-ATGTGATGAATGTGAA
* *
11224743 AGTGTATATATGT-A-CTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
11224790 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
11224839 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
11224888 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCC--------G-ATGTGATGAATGTGAA
* *
11224946 AGTGTATATATGT-A-CTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
11224993 AGTGTATATATGTGA
1 AGTGTATATATGTGA
11225008 CAGGGCCGAG
Statistics
Matches: 289, Mismatches: 11, Indels: 45
0.84 0.03 0.13
Matches are distributed among these distances:
47 70 0.24
48 3 0.01
49 129 0.45
56 28 0.10
57 3 0.01
58 56 0.19
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
AGTGTATATATGTGAGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:11224936 original size:58 final size:56
Alignment explanation
Indices: 11224872--11224991 Score: 197
Period size: 56 Copynumber: 2.1 Consensus size: 56
11224862 CTAATAGCCG
11224872 ATGTGATGAATGTGAAAGTGTATATATATGTGA-TAAGGCCTAATAGCCGATGTGATGA
1 ATGTGATGAATGTGAAAGTG--TATATATGT-ACTAAGGCCTAATAGCCGATGTGATGA
*
11224930 ATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATAGCCGATGTGATGA
11224986 ATGTGA
1 ATGTGA
11224992 AAGTGTATAT
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
55 1 0.02
56 39 0.65
58 20 0.33
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (56 bp):
ATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATAGCCGATGTGATGA
Found at i:11224954 original size:154 final size:148
Alignment explanation
Indices: 11224727--11225058 Score: 421
Period size: 154 Copynumber: 2.2 Consensus size: 148
11224717 GATGTGATGA
*
11224727 ATGTGATGAATGTGAAAGTG--TATATATGT-ACTAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGA-TAAGGCCTAATAGCCGATGTGATGAATGTGA
*
11224789 AAGT-GTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATG
65 AAGTAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATG
11224853 TGATAAGGCCTAATAGCCG
130 TGATAAGGCCTAATAGCCG
11224872 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAT
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA-
*
11224937 GAATGTGAAAGTGTATATATGT-ACTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
65 -AA-GT---AGTGTATATATGTGA-TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
11224999 TATATGTGACAGGGCCGAGTGGCCA
124 TATATGTGATAAGGCCTAATAGCCG
* * *
11225024 ACGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
11225059 TCCCGAAGGG
Statistics
Matches: 164, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
145 20 0.12
147 39 0.24
148 1 0.01
149 2 0.01
150 12 0.07
151 1 0.01
152 42 0.26
153 1 0.01
154 46 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (148 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
AGTAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
GATAAGGCCTAATAGCCG
Found at i:11224991 original size:203 final size:201
Alignment explanation
Indices: 11224642--11225058 Score: 694
Period size: 203 Copynumber: 2.1 Consensus size: 201
11224632 CAAGACAGTG
*
11224642 TATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAGATAAGG
1 TATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGAGATAAGG
11224707 CCTAATAGCCGATGTGATGAATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGC
66 CCTAATAGCCGATGTGATGAATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGC
* * * *
11224772 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
131 CGATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTG
*
11224837 AAAGTGTA
194 AAAGTGCA
* *
11224845 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGAGATAAGG
11224910 CCTAATAGCCGATGTGATGAATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGC
66 CCTAATAGCCGATGTGATGAATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGC
* * * *
11224975 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
131 CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAA
11225040 AGTGCA
196 AGTGCA
11225046 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
11225059 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
199 10 0.05
200 1 0.00
201 42 0.21
203 149 0.74
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (201 bp):
TATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGAGATAAGG
CCTAATAGCCGATGTGATGAATGTGATGAATGTGAAAGTGTATATATGTACTAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAA
AGTGCA
Found at i:11225233 original size:37 final size:37
Alignment explanation
Indices: 11225177--11225254 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
11225167 CCGAGCTCTA
* *
11225177 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
11225214 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
11225251 AAGA
1 AAGA
11225255 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:11227959 original size:53 final size:53
Alignment explanation
Indices: 11227886--11228095 Score: 240
Period size: 53 Copynumber: 4.0 Consensus size: 53
11227876 CCATGGCACT
* * * * *
11227886 AAAGAAGACCACGTCATGTAATACCCTAATTGGTGGGTTATGGCATCATATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* * * *
11227939 AAAGAAGACCATATCCTGTAAGACCGTAACTGATAGGTTATGACATCATATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* ** ** * * *
11227992 AAAGAAGAACTTATTGTGTAAGGCTGTAACTGGTGGGTTATGACATCTTATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* * *
11228045 AAGGAAGACCACATCATGTAAGACCATAACTGGTTGGTTATGACATCATAT
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATAT
11228096 CAGAAAAATT
Statistics
Matches: 128, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 128 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (53 bp):
AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
Found at i:11228336 original size:61 final size:59
Alignment explanation
Indices: 11228260--11228471 Score: 196
Period size: 61 Copynumber: 3.5 Consensus size: 59
11228250 AGCCTTTATA
* *
11228260 GCAAAACTCTGGATAGGAAAATCTTTGTAGCGAGTATTGAATGTAAAAGGAAACTTTTGTG
1 GCAAAACTATAGATAGGAAAATCTTTGT-GCGAGTATTGAATGT-AAAGGAAACTTTTGTG
* * * ** *
11228321 GCAACACTATTGATAGGAAAGAT-TTTGTGGCTAGTACCGAATGTAAAGGAAAACTATTGTG
1 GCAAAACTATAGATAGGAAA-ATCTTTGT-GCGAGTATTGAATGTAAAGG-AAACTTTTGTG
* * * *
11228382 GCAAAACTCTAGATAGGAAAACCTTTGTGTCGAGTCCTT-AATGTAAAGGACAACCTTTGTG
1 GCAAAACTATAGATAGGAAAATCTTTGTG-CGAGT-ATTGAATGTAAAGGA-AACTTTTGTG
* *
11228443 GCAAAACTCTAGATA-GAAAAGCCTTTGTG
1 GCAAAACTATAGATAGGAAAA-TCTTTGTG
11228472 GCAACCTCTG
Statistics
Matches: 126, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
60 13 0.10
61 111 0.88
62 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (59 bp):
GCAAAACTATAGATAGGAAAATCTTTGTGCGAGTATTGAATGTAAAGGAAACTTTTGTG
Found at i:11228409 original size:29 final size:29
Alignment explanation
Indices: 11228367--11228475 Score: 89
Period size: 29 Copynumber: 3.7 Consensus size: 29
11228357 CCGAATGTAA
11228367 AGGAAAA-CTATTGTGGCAAAACTCTAGAT
1 AGGAAAACCT-TTGTGGCAAAACTCTAGAT
* * ** *
11228396 AGGAAAACCTTTGTGTCGAGTC-CTTAATGTAA
1 AGGAAAACCTTTGTGGCAAAACTC-T-A-G-AT
*
11228428 AGGACAACCTTTGTGGCAAAACTCTAGAT
1 AGGAAAACCTTTGTGGCAAAACTCTAGAT
11228457 A-GAAAAGCCTTTGTGGCAA
1 AGGAAAA-CCTTTGTGGCAA
11228476 CCTCTGTTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
28 5 0.08
29 30 0.49
30 4 0.07
31 2 0.03
32 19 0.31
33 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (29 bp):
AGGAAAACCTTTGTGGCAAAACTCTAGAT
Found at i:11240322 original size:9 final size:9
Alignment explanation
Indices: 11240302--11240330 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
11240292 CAAATAATTC
11240302 ACACAA-CA
1 ACACAATCA
11240310 ACACAATCA
1 ACACAATCA
11240319 ACACAATCA
1 ACACAATCA
11240328 ACA
1 ACA
11240331 TTTAGCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.34, G:0.00, T:0.07
Consensus pattern (9 bp):
ACACAATCA
Found at i:11244605 original size:21 final size:21
Alignment explanation
Indices: 11244580--11244621 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
11244570 AAACCTGGTA
*
11244580 AAAGGTATCAATTCTTTTTGT
1 AAAGGTATCAATACTTTTTGT
11244601 AAAGGTATCAATACTTTTTGT
1 AAAGGTATCAATACTTTTTGT
11244622 GTAATTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (21 bp):
AAAGGTATCAATACTTTTTGT
Found at i:11248126 original size:26 final size:22
Alignment explanation
Indices: 11248074--11248128 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
11248064 GAGTATAGGA
11248074 ATTTAT-AATTAATTATTATTT
1 ATTTATAAATTAATTATTATTT
*
11248095 AATTATAAATTAAATTATTAATATAT
1 ATTTATAAATT-AATTATT-AT-T-T
11248121 ATTTATAA
1 ATTTATAA
11248129 TTCTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 7 0.26
24 2 0.07
25 1 0.04
26 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTATAAATTAATTATTATTT
Found at i:11248789 original size:28 final size:28
Alignment explanation
Indices: 11248757--11248810 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
11248747 AAAAATATAT
* *
11248757 ATTTTTATAATTTTTTACTTTTTAAATA
1 ATTTTAATAATTTTTTAATTTTTAAATA
*
11248785 ATTTTAATATTTTTTTAATTTTTAAA
1 ATTTTAATAATTTTTTAATTTTTAAA
11248811 AAAATATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (28 bp):
ATTTTAATAATTTTTTAATTTTTAAATA
Found at i:11248797 original size:19 final size:16
Alignment explanation
Indices: 11248754--11248806 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 16
11248744 TTAAAAAATA
11248754 TATATTTTTATAATTT
1 TATATTTTTATAATTT
*
11248770 TTTACTTTTTAAATAATTT
1 TATA-TTTTT--ATAATTT
*
11248789 TAATATTTTTTTAATTT
1 T-ATATTTTTATAATTT
11248806 T
1 T
11248807 TAAAAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.10
17 12 0.40
19 13 0.43
20 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATTTTTATAATTT
Found at i:11248847 original size:9 final size:9
Alignment explanation
Indices: 11248835--11248868 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
11248825 CAATTTTATG
11248835 AAATTTTTT
1 AAATTTTTT
11248844 AAATTTTTT
1 AAATTTTTT
*
11248853 AAA-TTTTG
1 AAATTTTTT
11248861 AAATTTTT
1 AAATTTTT
11248869 AAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
AAATTTTTT
Found at i:11265473 original size:58 final size:58
Alignment explanation
Indices: 11265383--11265647 Score: 530
Period size: 58 Copynumber: 4.6 Consensus size: 58
11265373 TGGTTTTGAA
11265383 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11265441 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11265499 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11265557 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11265615 ATGCAAACTTAACTAACATGAAAGTTACATAAT
1 ATGCAAACTTAACTAACATGAAAGTTACATAAT
11265648 GCATGACTTT
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 207 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (58 bp):
ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
Found at i:11268517 original size:12 final size:11
Alignment explanation
Indices: 11268497--11268540 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
11268487 GAATGGAAAC
11268497 TAATTTTTTTT
1 TAATTTTTTTT
*
11268508 CAATTTTTTTT
1 TAATTTTTTTT
*
11268519 TGATTTTTTTT
1 TAATTTTTTTT
* *
11268530 GAGTTTTTTTT
1 TAATTTTTTTT
11268541 GTTTTGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (11 bp):
TAATTTTTTTT
Found at i:11268541 original size:11 final size:10
Alignment explanation
Indices: 11268512--11268563 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 10
11268502 TTTTTTCAAT
11268512 TTTTTTTTGA
1 TTTTTTTTGA
11268522 TTTTTTTTGA
1 TTTTTTTTGA
11268532 GTTTTTTTTG-
1 -TTTTTTTTGA
*
11268542 TTTTGTTT--
1 TTTTTTTTGA
11268550 TTTTTTTT-A
1 TTTTTTTTGA
11268559 TTTTT
1 TTTTT
11268564 GAAAAAAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 7 0.18
9 12 0.32
10 10 0.26
11 9 0.24
ACGTcount: A:0.06, C:0.00, G:0.10, T:0.85
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:11269956 original size:58 final size:58
Alignment explanation
Indices: 11269866--11270130 Score: 530
Period size: 58 Copynumber: 4.6 Consensus size: 58
11269856 TGGTTTTGAA
11269866 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11269924 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11269982 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11270040 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
1 ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
11270098 ATGCAAACTTAACTAACATGAAAGTTACATAAT
1 ATGCAAACTTAACTAACATGAAAGTTACATAAT
11270131 GCATGACTTT
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 207 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (58 bp):
ATGCAAACTTAACTAACATGAAAGTTACATAATTAAACTAACTTGACTTAATTTAATG
Found at i:11287234 original size:15 final size:16
Alignment explanation
Indices: 11287208--11287237 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11287198 TAAAAATAAT
11287208 TATGTGTTAAAATTTA
1 TATGTGTTAAAATTTA
11287224 TATGT-TTAAAATTT
1 TATGTGTTAAAATTT
11287238 TTAATGAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
TATGTGTTAAAATTTA
Found at i:11291286 original size:42 final size:44
Alignment explanation
Indices: 11291192--11291286 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 44
11291182 TTCCTAGTGG
*
11291192 CATGC-ACTAGAGGGTCACATTTAAATTGCATAATATTCAGTTT
1 CATGCTACTAGAGAGTCACATTTAAATTGCATAATATTCAGTTT
*
11291235 CAT-CGTACTAGAGAGT-A-ATTTAAATTGCAT-ATACTTTAGTTT
1 CATGC-TACTAGAGAGTCACATTTAAATTGCATAATA-TTCAGTTT
11291277 CATGCTACTA
1 CATGCTACTA
11291287 TAAATTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
41 3 0.07
42 29 0.63
43 5 0.11
44 9 0.20
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (44 bp):
CATGCTACTAGAGAGTCACATTTAAATTGCATAATATTCAGTTT
Found at i:11295182 original size:18 final size:18
Alignment explanation
Indices: 11295155--11295192 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
11295145 GACCATACTA
*
11295155 GGGAATGAAAATGACCAT
1 GGGAAAGAAAATGACCAT
11295173 GGGAAAGAAAATGACCAT
1 GGGAAAGAAAATGACCAT
11295191 GG
1 GG
11295193 CTTATTCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.11, G:0.32, T:0.13
Consensus pattern (18 bp):
GGGAAAGAAAATGACCAT
Found at i:11297811 original size:21 final size:21
Alignment explanation
Indices: 11297766--11297828 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
11297756 TTTCAACCAT
*
11297766 TACCAATTCGTACCAAATACCA
1 TACCAATTCGTACC-AATTCCA
*
11297788 TACCATTTCGTACCAATTCCA
1 TACCAATTCGTACCAATTCCA
* * *
11297809 TACTACTTCGAACCAATTCC
1 TACCAATTCGTACCAATTCC
11297829 CAAATACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 23 0.64
22 13 0.36
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.29
Consensus pattern (21 bp):
TACCAATTCGTACCAATTCCA
Found at i:11298162 original size:11 final size:12
Alignment explanation
Indices: 11298145--11298180 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
11298135 AGGAGTTCGA
11298145 AAAAAAAAATTG
1 AAAAAAAAATTG
11298157 AAAAAAAAATTG
1 AAAAAAAAATTG
11298169 AAAAAAAAATTG
1 AAAAAAAAATTG
11298181 CATACGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:11308966 original size:39 final size:39
Alignment explanation
Indices: 11308871--11309013 Score: 168
Period size: 39 Copynumber: 3.6 Consensus size: 39
11308861 TTCAATGCTG
*
11308871 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
11308909 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
11308950 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
11308989 TCCGGGCTAAGCCCAAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
11309014 CACAAACTAG
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 68 0.75
40 11 0.12
41 11 0.12
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:11310648 original size:29 final size:28
Alignment explanation
Indices: 11310612--11310689 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
11310602 TCATGAGATT
11310612 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
11310642 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
11310669 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
11310690 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:11310906 original size:173 final size:174
Alignment explanation
Indices: 11310642--11310968 Score: 584
Period size: 173 Copynumber: 1.9 Consensus size: 174
11310632 AAATTGTACA
*
11310642 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
11310707 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGAC-TTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
**
11310771 TTTTGGACATTGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
11310815 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
11310880 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
11310945 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
11310969 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
173 113 0.77
174 33 0.23
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:11314243 original size:154 final size:156
Alignment explanation
Indices: 11314043--11314351 Score: 550
Period size: 154 Copynumber: 2.0 Consensus size: 156
11314033 TTTGTCATGA
*
11314043 TTAGTCTCTAGTTATATAATAAGCATGCTATACTAAAATAAATCATAGTGAAATTTACCTGAAAA
1 TTAGTCTCTAGTTATATAATAAGCATGCTATACTAAAATAAATCATAGTGAAATATACCTGAAAA
*
11314108 TCTTCAATATTTACAAAACAATTAGAATTTTCATGTACAATGCTTGAAAATTATTTGATACACAT
66 TCTTCAACATTTACAAAACAATTAGAATTTTCATGTACAATGCTTGAAAATTATTTGATACACAT
*
11314173 TGGACCAAATTTCAATGTCAATTATG
131 TGGACCAAATTTCAATGCCAATTATG
*
11314199 TTAGTCTCTAG-T-TATAATAAGCATGCTATACTAAAATATATCATAGTGAAATATACCTGAAAA
1 TTAGTCTCTAGTTATATAATAAGCATGCTATACTAAAATAAATCATAGTGAAATATACCTGAAAA
* *
11314262 TCTTTAACATTTACAAAACAATTAGAATTTTCATGTACAATGCTTGAAAGTTATTTGATACACAT
66 TCTTCAACATTTACAAAACAATTAGAATTTTCATGTACAATGCTTGAAAATTATTTGATACACAT
11314327 TGGACCAAATTTCAATGCCAATTAT
131 TGGACCAAATTTCAATGCCAATTAT
11314352 ATGTTATAGA
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
154 135 0.92
155 1 0.01
156 11 0.07
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (156 bp):
TTAGTCTCTAGTTATATAATAAGCATGCTATACTAAAATAAATCATAGTGAAATATACCTGAAAA
TCTTCAACATTTACAAAACAATTAGAATTTTCATGTACAATGCTTGAAAATTATTTGATACACAT
TGGACCAAATTTCAATGCCAATTATG
Found at i:11321541 original size:20 final size:20
Alignment explanation
Indices: 11321518--11321573 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
11321508 TATTAAAAAC
*
11321518 ATTTTCTAATATTTAATAAG
1 ATTTTCTAATATTTAATAAA
* * **
11321538 ATTTTATAATTTTTTCTAAA
1 ATTTTCTAATATTTAATAAA
*
11321558 ATTTTCCAATATTTAA
1 ATTTTCTAATATTTAA
11321574 ATAATTTAAA
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTTTCTAATATTTAATAAA
Found at i:11324450 original size:29 final size:29
Alignment explanation
Indices: 11324408--11324470 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
11324398 TTGGATTGGA
11324408 AGACTGTTTCGAAGGGATTATATGCTTTG
1 AGACTGTTTCGAAGGGATTATATGCTTTG
11324437 AGACTGTTTCGAAGGGATTATATGCTTTG
1 AGACTGTTTCGAAGGGATTATATGCTTTG
11324466 AGACT
1 AGACT
11324471 CTCAATCCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (29 bp):
AGACTGTTTCGAAGGGATTATATGCTTTG
Found at i:11329023 original size:21 final size:20
Alignment explanation
Indices: 11328997--11329045 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
11328987 CTATAAACAT
*
11328997 TGTTTTCAAGATATGTGATTA
1 TGTTTTCAAGACATGT-ATTA
* *
11329018 TGTTTTGAAAGACATGTTTTA
1 TGTTTT-CAAGACATGTATTA
11329039 TGTTTTC
1 TGTTTTC
11329046 TTCTATGCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.51
Consensus pattern (20 bp):
TGTTTTCAAGACATGTATTA
Found at i:11329034 original size:22 final size:21
Alignment explanation
Indices: 11329004--11329044 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
11328994 CATTGTTTTC
*
11329004 AAGATATGTGATTATGTTTTGA
1 AAGACATGT-ATTATGTTTTGA
*
11329026 AAGACATGTTTTATGTTTT
1 AAGACATGTATTATGTTTT
11329045 CTTCTATGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (21 bp):
AAGACATGTATTATGTTTTGA
Found at i:11339378 original size:40 final size:39
Alignment explanation
Indices: 11339347--11339556 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
11339337 GGACTAAGAT
* *
11339347 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
11339387 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
11339427 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
11339467 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
11339507 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
11339546 CCGAAGGCATT
1 CCGAAGGCATT
11339557 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:11339510 original size:120 final size:120
Alignment explanation
Indices: 11339294--11339556 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
11339284 TTGAATGCTG
* *
11339294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
11339358 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
11339414 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
11339477 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
11339533 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
11339557 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:11339576 original size:79 final size:80
Alignment explanation
Indices: 11339295--11339591 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
11339285 TGAATGCTGT
* ** * * * **
11339295 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
11339358 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
11339375 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
11339439 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
11339455 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
11339519 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
11339534 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
11339592 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:11359396 original size:21 final size:22
Alignment explanation
Indices: 11359358--11359402 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
11359348 ATTATGAATA
*
11359358 TTAATTCATAATATAATTAATT
1 TTAATTCATAATACAATTAATT
* *
11359380 TTAATTC-TAATCCAATTTATT
1 TTAATTCATAATACAATTAATT
11359401 TT
1 TT
11359403 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCATAATACAATTAATT
Found at i:11360051 original size:23 final size:23
Alignment explanation
Indices: 11360025--11360071 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
11360015 CTTTGGTAAT
11360025 ATGTTTGATTAAGTAAAACCATG
1 ATGTTTGATTAAGTAAAACCATG
11360048 ATGTTTGATTAAGTAAAACCATG
1 ATGTTTGATTAAGTAAAACCATG
11360071 A
1 A
11360072 CTAAGTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (23 bp):
ATGTTTGATTAAGTAAAACCATG
Found at i:11361632 original size:50 final size:51
Alignment explanation
Indices: 11361455--11361636 Score: 181
Period size: 51 Copynumber: 3.6 Consensus size: 51
11361445 AGCCTATAAA
* * * * * * *
11361455 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATA-GATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGA-AGGCT-TTGAT
* * * *
11361506 CACATGTGTAGTACTATGTGCAGTCTACTATGTGTACCGGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAGGCTTTGAT
* *
11361557 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACTGGAATG-TTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAGGCTTTGAT
* * *
11361607 CACGTGTGTAGTGCTACGTGAAGGCTACTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTA
11361637 CGTGTATCGA
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 32 0.28
51 77 0.68
52 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAGGCTTTGAT
Found at i:11363932 original size:49 final size:50
Alignment explanation
Indices: 11363870--11364003 Score: 207
Period size: 50 Copynumber: 2.7 Consensus size: 50
11363860 TCATTCGATA
*
11363870 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTAAAGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTAAAGCT
* * **
11363919 CACGTAGTAGCCTTCACATTGTACTACACATGTGATCAAGTTTTACGGCT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTAAAGCT
*
11363969 CACGTAGTAGCCTTCACATAGTACTACATACGTGA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGA
11364004 CCAAAGCTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
49 35 0.46
50 41 0.54
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTAAAGCT
Found at i:11364042 original size:51 final size:51
Alignment explanation
Indices: 11363868--11364206 Score: 239
Period size: 51 Copynumber: 6.7 Consensus size: 51
11363858 TATCATTCGA
* * * ***
11363868 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AGTTTTAAAG
1 TACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTCCGG
* * * * * * *
11363917 TTCACGTAGTAGCCTTCACATTGTACTACACATGTGATC-AAGTTTTACGG
1 TACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTCCGG
* *
11363967 CT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTCCGG
1 -TACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTCCGG
* * * * * *
11364018 TATC-CATAGTAGCCTTCACTTAGTACCACACATGTAACCATAG-TTTACCGA
1 TA-CACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTT-CCGG
* * * * * *
11364069 TACACGTAGTAGCTTTCGCACAATACTACACACGTG-CTCAAAAC-TTCTCGG
1 TACACATAGTAGCCTTCACATAGTACTACACACGTGAC-CAAAGCTTTC-CGG
* * * * *
11364120 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TTTATCGA
1 TACACATAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTTT-CCGG
* *
11364171 TACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TACACATAGTAGCCTTCACATAGTACTACACACGTG
11364207 TTCATCGATA
Statistics
Matches: 231, Mismatches: 45, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
49 36 0.16
50 48 0.21
51 144 0.62
52 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
TACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTCCGG
Found at i:11364104 original size:102 final size:102
Alignment explanation
Indices: 11363865--11364206 Score: 371
Period size: 102 Copynumber: 3.4 Consensus size: 102
11363855 TTTTATCATT
* * * * ** * *
11363865 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC---AGTTTTAAAGTTCACGTAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAACTTCT-CGGTACACATAGT
*
11363927 AGCCTTCACATT-GTACTACACATGTGATCA-AGTTTTAC
65 AGCCTTCAC-TTAGTACTACACATGTGACCATAG-TTTAC
* * * * *
11363965 GGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGAC-CAAAGCTT-TCCGGTATC-CATA
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG-CTCAAAACTTCT-CGGTA-CACATA
* *
11364026 GTAGCCTTCACTTAGTACCACACATGTAACCATAGTTTAC
63 GTAGCCTTCACTTAGTACTACACATGTGACCATAGTTTAC
* * *
11364066 CGATACACGTAGTAGCTTTCGCACAATACTACACACGTGCTCAAAACTTCTCGGTACACATAGTA
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAACTTCTCGGTACACATAGTA
*
11364131 GCCTTCACTTAGTACTACACATGTGACCATTA-TTTAT
66 GCCTTCACTTAGTACTACACATGTGACCA-TAGTTTAC
11364168 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
11364207 TTCATCGATA
Statistics
Matches: 202, Mismatches: 28, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
99 34 0.17
100 4 0.02
101 41 0.20
102 120 0.59
103 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (102 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAACTTCTCGGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCATAGTTTAC
Found at i:11375771 original size:629 final size:627
Alignment explanation
Indices: 11374920--11376070 Score: 2203
Period size: 629 Copynumber: 1.8 Consensus size: 627
11374910 TCAGTTCACC
*
11374920 CAGGTAGTACGAAAATGTTTAATGATTTGAAGAAATAGTATTGGTGGGCCGGGCATGAAAAAAAT
1 CAGGTAGTACGAAAATGTTTAATGAGTTGAAGAAATAGTATTGGTGGGCCGGGCATGAAAAAAAT
*
11374985 ATTTCTGAATTTGTATCAAAGTGTTTGATTTGTCAACAAGTAAAACCTAACATCAAGTACCTTCA
66 ATTTCTGAATTTGCATCAAAGTGTTTGATTTGTCAACAAGTAAAACCTAACATCAAGTACCTTCA
* *
11375050 GGTCTACTTCAACCATTAATGATTTCGGAGTGGAAACGGGACAGCATCACATTGGATTTTGTGAC
131 GGTCTACTTCAACCATTAATGATTTCGGAGTGGAAACAGGACAGCATCACATTAGATTTTGTGAC
11375115 GGGTTTGCCTCTGACTCCTAAGAAGAAAGATGCTATATGGGTAATCGTTGATAGATTGACGAAAT
196 GGGTTTGCCTCTGACTCCTAAGAAGAAAGATGCTATATGGGTAATCGTTGATAGATTGACGAAAT
11375180 CAGCCCATTTTACACCGGTACGTATTGATTACTCACTTGAAAAGTTGGCAGAGTTATATGTTGCT
261 CAGCCCATTTTACACCGGTACGTATTGATTACTCACTTGAAAAGTTGGCAGAGTTATATGTTGCT
11375245 GAAATTGTGAGGTTGCACGGGGTGCCTAAGTCTATTATTTCAGATAGAGATCTGAGGTTTACTTC
326 GAAATTGTGAGGTTGCACGGGGTGCCTAAGTCTATTATTTCAGATAGAGATCTGAGGTTTACTTC
11375310 GAGGTTTTGGAATAAGTTACAAGAAGCCTTGGGTACAAAATTGAACTTTAGTACTCCATTCCATC
391 GAGGTTTTGGAATAAGTTACAAGAAGCCTTGGGTACAAAATTGAACTTTAGTACTCCATTCCATC
11375375 CACAAACTGACGGACAATCTGAAAGAGTAATTCAAGTTCTTGAAGACATGCTCCGATGTTGTGTC
456 CACAAACTGACGGACAATCTGAAAGAGTAATTCAAGTTCTTGAAGACATGCTCCGATGTTGTGTC
11375440 CTCGGGTGCTCCTGTATTATTTGTGAAAAAGAAAGATGGTTATATAAGACTTTGTATTGAATATC
521 CTCGGGTGCTCCTGTATTATTTGTGAAAAAGAAAGATGGTTATATAAGACTTTGTATTGAATATC
11375505 GTCAGCTCAACAAAGTGACTATAAAGAACAAGTATCTGTTGT
586 GTCAGCTCAACAAAGTGACTATAAAGAACAAGTATCTGTTGT
*
11375547 CAGGTAGTACGAAAATGTTTAATGAGTTGAAGAAATTGTATTGGTGGGCCGGGCATGAAAAAAAA
1 CAGGTAGTACGAAAATGTTTAATGAGTTGAAGAAATAGTATTGGTGGGCCGGGCATG-AAAAAAA
*
11375612 TATTTCTGAATTTGCATCAAAGTGTTTGATTTGTCAACAAGTAAAAGCTAAACATCAAGTACCTT
65 TATTTCTGAATTTGCATCAAAGTGTTTGATTTGTCAACAAGTAAAACCT-AACATCAAGTACCTT
11375677 CAGGTCTACTTCAACCATTAATGATTTCGGAGTGGAAACAGGACAGCATCACATTAGATTTTGTG
129 CAGGTCTACTTCAACCATTAATGATTTCGGAGTGGAAACAGGACAGCATCACATTAGATTTTGTG
* *
11375742 ACGGGTTTGCCTCTGACTCCTAGGAAGAAAGATGCTATTTGGGTAATCGTTGATAGATTGACGAA
194 ACGGGTTTGCCTCTGACTCCTAAGAAGAAAGATGCTATATGGGTAATCGTTGATAGATTGACGAA
*
11375807 ATCAGCCCATTTTACACCGGTAGGTATTGATTACTCACTTGAAAAGTTGGCAGAGTTATATGTTG
259 ATCAGCCCATTTTACACCGGTACGTATTGATTACTCACTTGAAAAGTTGGCAGAGTTATATGTTG
11375872 CTGAAATTGTGAGGTTGCACGGGGTGCCTAAGTCTATTATTTCAGATAGAGATCTGAGGTTTACT
324 CTGAAATTGTGAGGTTGCACGGGGTGCCTAAGTCTATTATTTCAGATAGAGATCTGAGGTTTACT
11375937 TCGAGGTTTTGGAATAAGTTACAAGAAGCCTTGGGTACAAAATTGAACTTTAGTACTCCATTCCA
389 TCGAGGTTTTGGAATAAGTTACAAGAAGCCTTGGGTACAAAATTGAACTTTAGTACTCCATTCCA
11376002 TCCACAAACTGACGGACAATCTGAAAGAGTAATTCAAGTTCTTGAAGACATGCTCCGATGTTGTG
454 TCCACAAACTGACGGACAATCTGAAAGAGTAATTCAAGTTCTTGAAGACATGCTCCGATGTTGTG
11376067 TCCT
519 TCCT
11376071 AGAATTGGAA
Statistics
Matches: 513, Mismatches: 9, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
627 55 0.11
628 54 0.11
629 404 0.79
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (627 bp):
CAGGTAGTACGAAAATGTTTAATGAGTTGAAGAAATAGTATTGGTGGGCCGGGCATGAAAAAAAT
ATTTCTGAATTTGCATCAAAGTGTTTGATTTGTCAACAAGTAAAACCTAACATCAAGTACCTTCA
GGTCTACTTCAACCATTAATGATTTCGGAGTGGAAACAGGACAGCATCACATTAGATTTTGTGAC
GGGTTTGCCTCTGACTCCTAAGAAGAAAGATGCTATATGGGTAATCGTTGATAGATTGACGAAAT
CAGCCCATTTTACACCGGTACGTATTGATTACTCACTTGAAAAGTTGGCAGAGTTATATGTTGCT
GAAATTGTGAGGTTGCACGGGGTGCCTAAGTCTATTATTTCAGATAGAGATCTGAGGTTTACTTC
GAGGTTTTGGAATAAGTTACAAGAAGCCTTGGGTACAAAATTGAACTTTAGTACTCCATTCCATC
CACAAACTGACGGACAATCTGAAAGAGTAATTCAAGTTCTTGAAGACATGCTCCGATGTTGTGTC
CTCGGGTGCTCCTGTATTATTTGTGAAAAAGAAAGATGGTTATATAAGACTTTGTATTGAATATC
GTCAGCTCAACAAAGTGACTATAAAGAACAAGTATCTGTTGT
Found at i:11381867 original size:50 final size:50
Alignment explanation
Indices: 11381761--11381957 Score: 195
Period size: 50 Copynumber: 3.8 Consensus size: 50
11381751 ATTTGGGTAA
*
11381761 AAAGATCCCATGTAAGACCATGTCTACGACATGGCATTGGCATCATTGAGATTATG
1 AAAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA-C----AGA-TATG
* * *
11381817 AAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAGATATG
1 AAAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACAGATATG
* * * *
11381867 AAA-ACTCCCATGTAAGACCATATCTAGGATATGGCATTGG--CAGTACAAG
1 AAAGA-TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACAG-ATATG
* *
11381916 AAACATCCCATGTAAGACCATGTCTGGGACATGG-ATTTGGCA
1 AAAGATCCCATGTAAGACCATGTCTAGGACATGGCA-TTGGCA
11381958 TGTTATTATC
Statistics
Matches: 121, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
48 4 0.03
49 36 0.30
50 39 0.32
51 3 0.02
55 1 0.01
56 38 0.31
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (50 bp):
AAAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACAGATATG
Found at i:11381956 original size:49 final size:48
Alignment explanation
Indices: 11381822--11381957 Score: 159
Period size: 49 Copynumber: 2.8 Consensus size: 48
11381812 TTATGAAAGG
* * *
11381822 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAGATATGAAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG--CAGACAAGAAAAC
* * *
11381872 TCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGTACAAG-AAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAG-ACAAGAAAAC
11381920 ATCCCATGTAAGACCATGTCTGGGACATGG-ATTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
11381958 TGTTATTATC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
48 8 0.11
49 35 0.47
50 31 0.42
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (48 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGACAAGAAAAC
Found at i:11389445 original size:12 final size:12
Alignment explanation
Indices: 11389428--11389460 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
11389418 ACACATGGCT
11389428 GTGTCTCAGCCC
1 GTGTCTCAGCCC
*
11389440 GTGTCTCAGCCT
1 GTGTCTCAGCCC
11389452 GTGTCTCAG
1 GTGTCTCAG
11389461 TGTAAATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.33, G:0.27, T:0.30
Consensus pattern (12 bp):
GTGTCTCAGCCC
Found at i:11394214 original size:21 final size:21
Alignment explanation
Indices: 11394169--11394231 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
11394159 TTTGAACCAT
* *
11394169 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
11394191 TACCGTTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
11394212 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
11394232 CAAATACCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
21 23 0.66
22 12 0.34
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:11397985 original size:12 final size:12
Alignment explanation
Indices: 11397970--11398040 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 12
11397960 TCACTCTCAT
11397970 TTTCTTTTTCAA
1 TTTCTTTTTCAA
11397982 TTTCTTGTTTTC--
1 TTTC-T-TTTTCAA
* * *
11397994 TTTCATATTCAT
1 TTTCTTTTTCAA
11398006 TTTCTTTTTCAA
1 TTTCTTTTTCAA
***
11398018 TTTCTTTTTGTT
1 TTTCTTTTTCAA
11398030 TTTCTTTTTCA
1 TTTCTTTTTCA
11398041 CATGCTGTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
10 4 0.09
12 35 0.78
13 1 0.02
14 5 0.11
ACGTcount: A:0.11, C:0.15, G:0.03, T:0.70
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:11400303 original size:20 final size:20
Alignment explanation
Indices: 11400269--11400313 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
11400259 TAAATCTACA
11400269 TAATTAAAATAAGACAC-AAT
1 TAATTAAAATAAGAC-CTAAT
* *
11400289 TAATTAAATTCAGACCTAAT
1 TAATTAAAATAAGACCTAAT
11400309 TAATT
1 TAATT
11400314 CGGTTAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.33
Consensus pattern (20 bp):
TAATTAAAATAAGACCTAAT
Found at i:11403368 original size:43 final size:43
Alignment explanation
Indices: 11403307--11403392 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
11403297 AAGGAAAGAT
* *
11403307 GAGGATGTTTTGGTAAGAGTCGATAAATTTATTTTTCCTGCTG
1 GAGGATGTTTTGGTAAGAGTCAAAAAATTTATTTTTCCTGCTG
11403350 GAGGATGTTTTGGTAAGAGTCAAAAAATTTATTTTTCCTGCTG
1 GAGGATGTTTTGGTAAGAGTCAAAAAATTTATTTTTCCTGCTG
11403393 ATTTCATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (43 bp):
GAGGATGTTTTGGTAAGAGTCAAAAAATTTATTTTTCCTGCTG
Found at i:11419184 original size:17 final size:18
Alignment explanation
Indices: 11419152--11419185 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11419142 AAAAGAGAGT
*
11419152 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
11419170 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
11419186 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:11420476 original size:20 final size:20
Alignment explanation
Indices: 11420453--11420506 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
11420443 AGTTTTTCCC
*
11420453 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
11420473 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
11420493 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
11420507 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Done.