Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 40 of 182
Found at i:12733756 original size:15 final size:15
Alignment explanation
Indices: 12733711--12733818 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
12733701 CCAATATCTC
12733711 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
12733726 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
12733741 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
12733756 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
12733771 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
12733786 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
12733801 GATACCCATATCTTT
1 GATACCCATATCTTT
12733816 GAT
1 GAT
12733819 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:12733825 original size:30 final size:30
Alignment explanation
Indices: 12733701--12733824 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
12733691 TTTTATTATG
*
12733701 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
12733732 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
12733762 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
12733792 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
12733822 CCA
1 CCA
12733825 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:12749079 original size:144 final size:144
Alignment explanation
Indices: 12748809--12749300 Score: 628
Period size: 144 Copynumber: 3.4 Consensus size: 144
12748799 ATTGATATGC
* * * *
12748809 AGACGCCTTAGGGAAGAGAGATTTCCCAACAACTCTGGCAAGGCTTCTATTTCATGAAACCTCGA
1 AGACGCCTTAGAGAAGAGAGATTTCCCAACCACTCTGGAAAGGCTTCTATTCCATGAAACCTCGA
* * **
12748874 CATAGTCAAATCTTCAAGGGCACTGGGGAGTTGAAGTTGGTGAGGAAGGCTCTTTAGCTTTCCAA
66 CATAGTCAAATCTTCAAGGGCAGTGAGGAGTTGAAGTTGGTGAGGAAAACTCTTTAGCTTTCCAA
12748939 AACCACTCAAATAT
131 AACCACTCAAATAT
** * * * * * **
12748953 AGATACCTTAGCGAAGAAAGCTTTCCCAACCACTCCGGAAAGGCTTCTATTCCTTGAAA-CTCTT
1 AGACGCCTTAGAGAAGAGAGATTTCCCAACCACTCTGGAAAGGCTTCTATTCCATGAAACCTCGA
* * * ** * * *
12749017 CTATAGTCAAATATTTAAGGGTAGAAAGGAATTGAAGTTGGTGAGGAAAACTCTTTAACTTTCGA
66 C-ATAGTCAAATCTTCAAGGGCAGTGAGGAGTTGAAGTTGGTGAGGAAAACTCTTTAGCTTTCCA
12749082 AAACCACTCAAATAT
130 AAACCACTCAAATAT
* * * * *
12749097 AGACGCTTTAGAGAAGAGAGATTTCCCAGCCACTCTGGCAAGGCTTCTATTTCATGAAACCCCGA
1 AGACGCCTTAGAGAAGAGAGATTTCCCAACCACTCTGGAAAGGCTTCTATTCCATGAAACCTCGA
*
12749162 CATAGTCAAATCTTCAAGGGCAGTGAGGTGTTGAAGTTGGTGAGGAAAACTCTTTAGCTTTCCAA
66 CATAGTCAAATCTTCAAGGGCAGTGAGGAGTTGAAGTTGGTGAGGAAAACTCTTTAGCTTTCCAA
*
12749227 AACCAATCAAACT-T
131 AACCACTCAAA-TAT
* * * *
12749241 AGACGCCATAGAGAAGAGAGATTTCCCAACCACTCAGGAAAGCCTTCTATTCCTTGAAAC
1 AGACGCCTTAGAGAAGAGAGATTTCCCAACCACTCTGGAAAGGCTTCTATTCCATGAAAC
12749301 TCTTGTACCA
Statistics
Matches: 289, Mismatches: 56, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
143 4 0.01
144 281 0.97
145 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (144 bp):
AGACGCCTTAGAGAAGAGAGATTTCCCAACCACTCTGGAAAGGCTTCTATTCCATGAAACCTCGA
CATAGTCAAATCTTCAAGGGCAGTGAGGAGTTGAAGTTGGTGAGGAAAACTCTTTAGCTTTCCAA
AACCACTCAAATAT
Found at i:12749695 original size:210 final size:210
Alignment explanation
Indices: 12749311--12750556 Score: 1617
Period size: 210 Copynumber: 5.9 Consensus size: 210
12749301 TCTTGTACCA
* * *
12749311 GAAGAACTTCAAATTCATTGCAGCTATCAATTGACAGATCTTGAAGAGAGGAAAATCCTTCCAAA
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
* * *
12749376 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCCTTGAGACAAATGAAGGTAGA
66 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
** * * * * *
12749441 TAATTTGTCTCCAATCTTTCTTAGTTTTTCACAATAGAAAATGCTGAGCTTTTCAAGAGATGAAC
131 TAATCCGTCTCCAATCTTGCTTAATTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGAAC
12749506 ACCTTCCAGTTATCG
196 ACCTTCCAGTTATCG
12749521 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
* *
12749586 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTCTGAGACAAGTAGAGGTAGA
66 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
* * *
12749651 TAATCCGTCTCCAATCTTGCTTAATTTTTTGCAATCGGAAATGCTAAGCTTTTCGAGAGATGAAC
131 TAATCCGTCTCCAATCTTGCTTAATTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGAAC
* *
12749716 ACCTTCCAATTATTG
196 ACCTTCCAGTTATCG
* * * * * *
12749731 GAAGAACTTCCAATCCGTTGCAGCTATCAATCGAGATATTTTGAAGATAGGAAAATCCTTCTAAA
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
**
12749796 TTTGGAATTAAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
66 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
* * *
12749861 TAATCCGTCTCCAATCTTGCTTAATTTTTCGCAACCGAAAATGTTAAGCTTTTCAAGAGATGAGC
131 TAATCCGTCTCCAATCTTGCTTAATTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGAAC
* **
12749926 ATGC-TCCAAATATCG
196 A-CCTTCCAGTTATCG
* * * * * * *
12749941 GAAGAACTTCCAATCCGTTGCAGGTATGAATTGACAGATTTTGGAGACACGAAAATCCTTTCAAA
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
* ** * *
12750006 TTTGGAATCGAACTTAAATTAGGACAA-TCTTCTAGATTTAATTCTTTGAGACAAGTGTAGGTAA
66 TTTGGAATCCAACTTAAATTAGGACAATTCTT-TAGACCTAATTCTTTGAGACAAGTGGAGGTAG
* ** * * * * * *
12750070 ATAATCTGTCTCCAATCTTGGATAATGTTTT-ACACTTGGAAATGCTAAGCTTTACAA-AAACTG
130 ATAATCCGTCTCCAATCTTGCTTAAT-TTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGA-TG
* * *
12750133 AACATCC-TCCGGATATCT
193 AACA-CCTTCCAGTTATCG
* * * * * * *
12750151 CAAGAACTTCCAATTTGATGCAGCTATCAATTGACAGATTCTGAATAGACGAAAATCCTTCCAAT
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
** * *** ** *
12750216 TTTGGAATGGAAGTTAAATTAGGACACCACAATAG-CTCTAATTCTTTAAGACAAGTGGAGGTAG
66 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGAC-CTAATTCTTTGAGACAAGTGGAGGTAG
* * * *
12750280 ATAAACCGTAC-CCAATCTTTCTTAATTTCTCGCAATCGAGAATGCTAAGCTTTTCAAGAGATGA
130 ATAATCCGT-CTCCAATCTTGCTTAATTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGA
* *
12750344 ACACCTCCCAGTTATTG
194 ACACCTTCCAGTTATCG
* *
12750361 GAAGAGCTTCCAATTCATTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
1 GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
*
12750426 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGAGCTAATTCTTTGAGACAAGTGGAGGTAGA
66 TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
12750491 TAATCCGTCTCCAATCTTGCTTAAGTTTTT-GCAATCGAAAATGCTAAGCTTTTCAAGAGATGAA
131 TAATCCGTCTCCAATCTTGCTTAA-TTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGAA
12750555 CA
195 CA
12750557 TTGTCCCGTA
Statistics
Matches: 888, Mismatches: 135, Indels: 26
0.85 0.13 0.02
Matches are distributed among these distances:
209 12 0.01
210 863 0.97
211 13 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (210 bp):
GAAGAACTTCCAATTCGTTGCAGCTATCAATTGACAGATTTTGAAGAGAGGAAAATCCTTCCAAA
TTTGGAATCCAACTTAAATTAGGACAATTCTTTAGACCTAATTCTTTGAGACAAGTGGAGGTAGA
TAATCCGTCTCCAATCTTGCTTAATTTTTCGCAATCGAAAATGCTAAGCTTTTCAAGAGATGAAC
ACCTTCCAGTTATCG
Found at i:12753324 original size:13 final size:13
Alignment explanation
Indices: 12753308--12753339 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
12753298 TCCAGGAACC
12753308 GAAATGGAGAGAA
1 GAAATGGAGAGAA
12753321 GAAATGGAGAGAA
1 GAAATGGAGAGAA
12753334 GAAATG
1 GAAATG
12753340 AAGATGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.38, T:0.09
Consensus pattern (13 bp):
GAAATGGAGAGAA
Found at i:12756270 original size:15 final size:14
Alignment explanation
Indices: 12756250--12756279 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
12756240 TTTTTGAAAT
12756250 AAAAATAAAAATAAA
1 AAAAATAAAAA-AAA
12756265 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
12756279 A
1 A
12756280 TATGTGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAATAAAAAAAA
Found at i:12756971 original size:45 final size:45
Alignment explanation
Indices: 12756890--12757028 Score: 203
Period size: 45 Copynumber: 3.1 Consensus size: 45
12756880 ATTTGCCGGC
* *
12756890 TTACTGATTCGGCACTTTGTGTGTCG-A-ACTGTTACTGTTACTG
1 TTACCGATTCGACACTTTGTGTGTCGAATACTGTTACTGTTACTG
12756933 TTACCGATTCGACACTTTGTGTGTCGAATACTGTTACTGTTACTG
1 TTACCGATTCGACACTTTGTGTGTCGAATACTGTTACTGTTACTG
* *
12756978 TTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACTGTTACTG
1 TTACCGATTCGA-CACTTTGTGTGTCGAATACTGTTACTGTTACTG
*
12757023 CTACCG
1 TTACCG
12757029 TTACTGATTA
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
43 24 0.28
44 2 0.02
45 61 0.70
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (45 bp):
TTACCGATTCGACACTTTGTGTGTCGAATACTGTTACTGTTACTG
Found at i:12757017 original size:6 final size:6
Alignment explanation
Indices: 12757006--12757048 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
12756996 GTGTGTTGAA
* *
12757006 TACTGT TACTGT TACTGC TACCGT TACTGAT TACTGTT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG-T TACTG
12757049 GTGTATTTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
6 19 0.61
7 12 0.39
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:12762122 original size:11 final size:11
Alignment explanation
Indices: 12762067--12762125 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
12762057 TTTTACTCTT
* *
12762067 TTTTGTTATTG
1 TTTTGCTATTA
* *
12762078 TTTTGCTGTCA
1 TTTTGCTATTA
12762089 TTTTGCTATTA
1 TTTTGCTATTA
*
12762100 TATTGCTATTA
1 TTTTGCTATTA
* *
12762111 TTTTGTTGTTA
1 TTTTGCTATTA
12762122 TTTT
1 TTTT
12762126 TTAGATATTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (11 bp):
TTTTGCTATTA
Found at i:12763700 original size:30 final size:31
Alignment explanation
Indices: 12763626--12763692 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
12763616 GAAATTTAAA
* * *
12763626 TTAATAATAATAAAATTTTACTTTGATATCT
1 TTAAAAATAATAAAATTTTAATTTAATATCT
*
12763657 TTAAAAATAATAAAATTTTAATTTAAT-TTT
1 TTAAAAATAATAAAATTTTAATTTAATATCT
12763687 TTAAAA
1 TTAAAA
12763693 TTTATAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (31 bp):
TTAAAAATAATAAAATTTTAATTTAATATCT
Found at i:12768628 original size:199 final size:200
Alignment explanation
Indices: 12768283--12768684 Score: 716
Period size: 199 Copynumber: 2.0 Consensus size: 200
12768273 TGCATTGCTT
* * * *
12768283 CCAAATTTCAACACTCCTCCTTGGCCACAAAGCAGTAGACTCCAATTCCTTTCCTCAAATACTCA
1 CCAAATTTCAACACTCCTCCTTAGCCACAAAGCAGCAAACGCCAATTCCTTTCCTCAAATACTCA
*
12768348 AACCTTGCATTAACTAGTGGCTTGGTCAGAATGTCTGCAAGCTGAACCTCCGAATAGCAGTGAGT
66 AACCTTGCATTAACTAGTGGCTTGGTCAGAATGTCTGCAAGCTGAACCTCCGAACAGCAGTGAGT
12768413 CAAATTGACTTCCCTTGATAGTTCTGTCTCCCTTACAAAATGATACTTGATCTTGAAGTGCTTGG
131 CAAATTGACTTCCCTTGATAGTTCTGTCTCCCTTACAAAATGATACTTGATCTTGAAGTGCTTGG
12768478 TC-TG
196 TCTTG
* *
12768482 CCAACTTTCAACACTCCTCCTTAGCCACAAAGCAGCAAACGCCAATTCTTTTCCTCAAATACTCA
1 CCAAATTTCAACACTCCTCCTTAGCCACAAAGCAGCAAACGCCAATTCCTTTCCTCAAATACTCA
* *
12768547 AACCTTGCATTAGCTAGTGGCTTGGTCAGAATGTCTGCAAGCTGAACCTTCGAACAGCAGTGAGT
66 AACCTTGCATTAACTAGTGGCTTGGTCAGAATGTCTGCAAGCTGAACCTCCGAACAGCAGTGAGT
12768612 CAAATTGACTTCCCTTGATAGTTCTGTCTCCCTTACAAAATGATACTTGATCTTGAAGTGCTTGG
131 CAAATTGACTTCCCTTGATAGTTCTGTCTCCCTTACAAAATGATACTTGATCTTGAAGTGCTTGG
12768677 TCTTG
196 TCTTG
12768682 CCA
1 CCA
12768685 TGAATTACAG
Statistics
Matches: 193, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
199 188 0.97
200 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (200 bp):
CCAAATTTCAACACTCCTCCTTAGCCACAAAGCAGCAAACGCCAATTCCTTTCCTCAAATACTCA
AACCTTGCATTAACTAGTGGCTTGGTCAGAATGTCTGCAAGCTGAACCTCCGAACAGCAGTGAGT
CAAATTGACTTCCCTTGATAGTTCTGTCTCCCTTACAAAATGATACTTGATCTTGAAGTGCTTGG
TCTTG
Found at i:12769910 original size:540 final size:539
Alignment explanation
Indices: 12768886--12769966 Score: 1991
Period size: 540 Copynumber: 2.0 Consensus size: 539
12768876 CTAACAAAAA
*
12768886 ACCCCTGAACCTAAAGTGAAAAAATAGCTCGATATGCTCTTCATGTCATCAATTGAGCTTGCCCA
1 ACCCCTGAACCTAAAGTGAAAAAATAGCTCGATATGCTCTTCATGTCATCAATTGAGCCTGCCCA
12768951 GTCACTATCTGAATAGCCAACCAGTTTCAGCTCCTCAGCCTTCACAAACTTCACTCTATAGCTTA
66 GTCACTATCTGAATAGCCAACCAGTTTCAGCTCCTCAGCCTTCACAAACTTCACTCTATAGCTTA
12769016 AGGTCCCTTTGACATACTTAAGACTCTTTTTGCAGCCTTGAAATGAGCAACATTGCAACAATGCA
131 AGGTCCCTTTGACATACTTAAGACTCTTTTTGCAGCCTTGAAATGAGCAACATTGCAACAATGCA
* *
12769081 TGAACCTAGCTTGATAGAAGGCTGATTGCATACATGATATCTGACCTTGTTGCTGTCAAATAGAG
196 TGAACCTAGCTTGATAGAAGGCTGACTGCATACATGATATCTGAACTTGTTGCTGTCAAATAGAG
*
12769146 CAGGCAACCAACTAGACTTCTGTAACCCTTTTCATCCACTCGTTCATGGTCACTATTGCTGGAGA
261 CAGGCAACCAACTAGACTTCTGTAACCCTTCTCATCCACTCGTTCATGGTCACTATTGCTGGAGA
*
12769211 GTTTTTCTCCTTGTGCCACAGGAGTGCTAGCAGGTTCGCTGTTTTCCATGTAAAACTTGCTTAAA
326 GTTTTTCTCCTTGTGCCACAGGAGTGCTAGCAGGTTCGCTGTTTTCCATGCAAAACTTGCTTAAA
*
12769276 ATCTTTAGAGCAAAAGCATGTTCGCTTATGAAGATGCCATGCTCATTCTTATTTACTTTCATACT
391 ATCTTTAGAGCAAAAGCATGTTCGCTTATGAAGATGCCATGCTCATTCTTATTTACTTTCATACC
* *
12769341 AAGAAAGTAGGTCATCAAACCTACATCAGTCATCTCAAAGACATCTTGCATCTGTTTCTTGAATT
456 AAGAAAGTAGGTCATAAAACCTACATCAGTCATCTCAAAGACATCTAGCATCTGTTTCTTGAATT
12769406 CTTCAATCAATTCATTCCT
521 CTTCAATCAATTCATTCCT
* *
12769425 ACCCCTGAACCTAAAGTGAAAAAATAGCTCGATGTGCTCTTCATGTCATCAATTGATCCTGCCCA
1 ACCCCTGAACCTAAAGTGAAAAAATAGCTCGATATGCTCTTCATGTCATCAATTGAGCCTGCCCA
12769490 GTCACTATCTGAATAGCCAACCAGTTTCAGCTCCTCAGCCTTCACAAACTTCACTCTATAGCTTA
66 GTCACTATCTGAATAGCCAACCAGTTTCAGCTCCTCAGCCTTCACAAACTTCACTCTATAGCTTA
12769555 AGGTCCCTTTGACATACCTTAAGACTCTTTTTGCAGCCTTGAAATGAGCAACATTGCAACAATGC
131 AGGTCCCTTTGACATA-CTTAAGACTCTTTTTGCAGCCTTGAAATGAGCAACATTGCAACAATGC
* *
12769620 ATGAACCTAGCTTGATAGAAGGTTGACTGCATACATGATATCTGAACTTTTTGCTGTCAAATAGA
195 ATGAACCTAGCTTGATAGAAGGCTGACTGCATACATGATATCTGAACTTGTTGCTGTCAAATAGA
12769685 GCAGGCAACCAACTAGACTTCTGTAACCCTTCTCATCCACTCGTTCATGGTCACTATTGCTGGAG
260 GCAGGCAACCAACTAGACTTCTGTAACCCTTCTCATCCACTCGTTCATGGTCACTATTGCTGGAG
** *
12769750 AGTTTTTCTCCTTGTGCCACAGGAGTGCTAGCAGGTTTTCTGTTTTTCATGCAAAACTTGCTTAA
325 AGTTTTTCTCCTTGTGCCACAGGAGTGCTAGCAGGTTCGCTGTTTTCCATGCAAAACTTGCTTAA
*
12769815 AATCTTTAGAGCAAAAGCATGTTGGCTTATGAAGATGCCATGCTCATTCTTATTTACTTTCATAC
390 AATCTTTAGAGCAAAAGCATGTTCGCTTATGAAGATGCCATGCTCATTCTTATTTACTTTCATAC
* *
12769880 CAAGAAAGTAGGTCATAAAACCTGCATCAGTCATCTCAAAGACATCTAGCATTTGTTTCTTGAAT
455 CAAGAAAGTAGGTCATAAAACCTACATCAGTCATCTCAAAGACATCTAGCATCTGTTTCTTGAAT
12769945 TCTTCAATCAATTCATTCCT
520 TCTTCAATCAATTCATTCCT
12769965 AC
1 AC
12769967 AACCAGTAAC
Statistics
Matches: 523, Mismatches: 18, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
539 143 0.27
540 380 0.73
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (539 bp):
ACCCCTGAACCTAAAGTGAAAAAATAGCTCGATATGCTCTTCATGTCATCAATTGAGCCTGCCCA
GTCACTATCTGAATAGCCAACCAGTTTCAGCTCCTCAGCCTTCACAAACTTCACTCTATAGCTTA
AGGTCCCTTTGACATACTTAAGACTCTTTTTGCAGCCTTGAAATGAGCAACATTGCAACAATGCA
TGAACCTAGCTTGATAGAAGGCTGACTGCATACATGATATCTGAACTTGTTGCTGTCAAATAGAG
CAGGCAACCAACTAGACTTCTGTAACCCTTCTCATCCACTCGTTCATGGTCACTATTGCTGGAGA
GTTTTTCTCCTTGTGCCACAGGAGTGCTAGCAGGTTCGCTGTTTTCCATGCAAAACTTGCTTAAA
ATCTTTAGAGCAAAAGCATGTTCGCTTATGAAGATGCCATGCTCATTCTTATTTACTTTCATACC
AAGAAAGTAGGTCATAAAACCTACATCAGTCATCTCAAAGACATCTAGCATCTGTTTCTTGAATT
CTTCAATCAATTCATTCCT
Found at i:12776790 original size:237 final size:237
Alignment explanation
Indices: 12776375--12776849 Score: 923
Period size: 237 Copynumber: 2.0 Consensus size: 237
12776365 TCACTAGCCA
12776375 CGTGTGCATCTACTCGTGTATCTAATGAACTCGGTTCAAACCAGCCCATAGCCGCCTACCAGTCT
1 CGTGTGCATCTACTCGTGTATCTAATGAACTCGGTTCAAACCAGCCCATAGCCGCCTACCAGTCT
*
12776440 GCATATGGAACTCTTGCAGTGAGCACAATTTCCGGTTGCGTTGGTGCATTGGCAATGGTGGGCGC
66 GCATACGGAACTCTTGCAGTGAGCACAATTTCCGGTTGCGTTGGTGCATTGGCAATGGTGGGCGC
12776505 GAGAGGCGTTTGGGCTCCTCTGTTTAGCCATGACAAAGGAATCATAAAAGGAGTGAAAAAGATGA
131 GAGAGGCGTTTGGGCTCCTCTGTTTAGCCATGACAAAGGAATCATAAAAGGAGTGAAAAAGATGA
12776570 TGCTGCTAATGGCAGTGATTGAAGTTGTAAACTTCCCCTTAG
196 TGCTGCTAATGGCAGTGATTGAAGTTGTAAACTTCCCCTTAG
*
12776612 CGTGTGCATCTACTCGTGTATCTAATGAGCTCGGTTCAAACCAGCCCATAGCCGCCTACCAGTCT
1 CGTGTGCATCTACTCGTGTATCTAATGAACTCGGTTCAAACCAGCCCATAGCCGCCTACCAGTCT
*
12776677 GCATACGTAACTCTTGCAGTGAGCACAATTTCCGGTTGCGTTGGTGCATTGGCAATGGTGGGCGC
66 GCATACGGAACTCTTGCAGTGAGCACAATTTCCGGTTGCGTTGGTGCATTGGCAATGGTGGGCGC
12776742 GAGAGGCGTTTGGGCTCCTCTGTTTAGCCATGACAAAGGAATCATAAAAGGAGTGAAAAAGATGA
131 GAGAGGCGTTTGGGCTCCTCTGTTTAGCCATGACAAAGGAATCATAAAAGGAGTGAAAAAGATGA
12776807 TGCTGCTAATGGCAGTGATTGAAGTTGTAAACTTCCCCTTAG
196 TGCTGCTAATGGCAGTGATTGAAGTTGTAAACTTCCCCTTAG
12776849 C
1 C
12776850 TGTTTGTGGA
Statistics
Matches: 235, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
237 235 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (237 bp):
CGTGTGCATCTACTCGTGTATCTAATGAACTCGGTTCAAACCAGCCCATAGCCGCCTACCAGTCT
GCATACGGAACTCTTGCAGTGAGCACAATTTCCGGTTGCGTTGGTGCATTGGCAATGGTGGGCGC
GAGAGGCGTTTGGGCTCCTCTGTTTAGCCATGACAAAGGAATCATAAAAGGAGTGAAAAAGATGA
TGCTGCTAATGGCAGTGATTGAAGTTGTAAACTTCCCCTTAG
Found at i:12786143 original size:31 final size:31
Alignment explanation
Indices: 12786077--12786146 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
12786067 ACTGTTAATC
*
12786077 AGTGACTGCTTTGTCACTTTTTTATAACGTT
1 AGTGACTGCTTTGTCACTTTTTTATAAAGTT
* * * *
12786108 AGTGATTGTTTTGTCATTTTTTTA-AAATTT
1 AGTGACTGCTTTGTCACTTTTTTATAAAGTT
12786138 GAGTGACTG
1 -AGTGACTG
12786147 AAATGAAACC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.50
Consensus pattern (31 bp):
AGTGACTGCTTTGTCACTTTTTTATAAAGTT
Found at i:12787867 original size:12 final size:12
Alignment explanation
Indices: 12787852--12787876 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12787842 CAAATCACCC
12787852 ATCATTTAATTA
1 ATCATTTAATTA
12787864 ATCATTTAATTA
1 ATCATTTAATTA
12787876 A
1 A
12787877 AGCTTCTCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
ATCATTTAATTA
Found at i:12791623 original size:13 final size:12
Alignment explanation
Indices: 12791607--12791653 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
12791597 TAATAAAAAT
12791607 AATAAATATTAAA
1 AATAAATA-TAAA
12791620 AATAAATATAAA
1 AATAAATATAAA
*
12791632 TATAAAT-TACAA
1 AATAAATATA-AA
12791644 ATATAAATAT
1 A-ATAAATAT
12791654 GTCCGACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 2 0.07
12 12 0.41
13 14 0.48
14 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (12 bp):
AATAAATATAAA
Found at i:12791625 original size:6 final size:6
Alignment explanation
Indices: 12791598--12791653 Score: 58
Period size: 6 Copynumber: 8.8 Consensus size: 6
12791588 CAACTTTTTT
* * *
12791598 AATAAA AATAATA AATATTA AAAATA AATATA AATATA AATTACA AATATA
1 AATATA AAT-ATA AATA-TA AATATA AATATA AATATA AA-TATA AATATA
12791649 AATAT
1 AATAT
12791654 GTCCGACCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
6 27 0.64
7 15 0.36
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (6 bp):
AATATA
Found at i:12791630 original size:19 final size:20
Alignment explanation
Indices: 12791598--12791653 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
12791588 CAACTTTTTT
12791598 AATAA-AAATAATAAATATTA
1 AATAACAAAT-ATAAATATTA
*
12791618 AA-AATAAATATAAATA-TA
1 AATAACAAATATAAATATTA
*
12791636 AATTACAAATATAAATAT
1 AATAACAAATATAAATAT
12791654 GTCCGACCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 4 0.13
19 21 0.68
20 6 0.19
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAACAAATATAAATATTA
Found at i:12794913 original size:20 final size:21
Alignment explanation
Indices: 12794890--12794929 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
12794880 ATTCTATTCC
*
12794890 AAGAACGTATCTTTT-ATTTG
1 AAGAACGAATCTTTTGATTTG
*
12794910 AAGATCGAATCTTTTGATTT
1 AAGAACGAATCTTTTGATTT
12794930 CTAATGTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (21 bp):
AAGAACGAATCTTTTGATTTG
Found at i:12795885 original size:32 final size:32
Alignment explanation
Indices: 12795849--12795918 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
12795839 TTGATTTATT
12795849 CTTTA-ATGCAACATACAAAAATTTTCACGATA
1 CTTTACATGCAA-ATACAAAAATTTTCACGATA
* * *
12795881 CTTTACCTTCTAATACAAAAATTTTCACGATA
1 CTTTACATGCAAATACAAAAATTTTCACGATA
12795913 CTTTAC
1 CTTTAC
12795919 CTTCTAATCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 31 0.91
33 3 0.09
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (32 bp):
CTTTACATGCAAATACAAAAATTTTCACGATA
Found at i:12795919 original size:32 final size:32
Alignment explanation
Indices: 12795861--12795926 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
12795851 TTAATGCAAC
12795861 ATACAAAAATTTTCACGATACTTTACCTTCTA
1 ATACAAAAATTTTCACGATACTTTACCTTCTA
12795893 ATACAAAAATTTTCACGATACTTTACCTTCTA
1 ATACAAAAATTTTCACGATACTTTACCTTCTA
12795925 AT
1 AT
12795927 CCAATGTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (32 bp):
ATACAAAAATTTTCACGATACTTTACCTTCTA
Found at i:12806911 original size:10 final size:10
Alignment explanation
Indices: 12806896--12806929 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
12806886 GCTAGAAACC
12806896 AAAAAATTAA
1 AAAAAATTAA
12806906 AAAAAATTAA
1 AAAAAATTAA
12806916 AAAATAA-TAA
1 AAAA-AATTAA
12806926 AAAA
1 AAAA
12806930 GAGTTAGGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 21 0.91
11 2 0.09
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:12816311 original size:21 final size:21
Alignment explanation
Indices: 12816265--12816311 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
12816255 TATGTTCGAG
*
12816265 GTTTAATGTTTATGGTTTAAA
1 GTTTAAGGTTTATGGTTTAAA
* *
12816286 ATTTAAGGTTCTA-GGTTTAGA
1 GTTTAAGGTT-TATGGTTTAAA
12816307 GTTTA
1 GTTTA
12816312 TGATTCAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (21 bp):
GTTTAAGGTTTATGGTTTAAA
Found at i:12818761 original size:17 final size:18
Alignment explanation
Indices: 12818734--12818769 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
12818724 GTTATTTAAA
12818734 AAAAGTTATAAACATTTT
1 AAAAGTTATAAACATTTT
*
12818752 AAAA-TTATAAATATTTT
1 AAAAGTTATAAACATTTT
12818769 A
1 A
12818770 TTAAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
AAAAGTTATAAACATTTT
Found at i:12830880 original size:24 final size:25
Alignment explanation
Indices: 12830853--12830909 Score: 82
Period size: 24 Copynumber: 2.3 Consensus size: 25
12830843 TTTAGTCTTT
12830853 TTTTTTAAGTTAACCTCACTACT-A
1 TTTTTTAAGTTAACCTCACTACTAA
*
12830877 -TTTTAAGAGTTAACCTCACTACTAA
1 TTTTTTA-AGTTAACCTCACTACTAA
12830902 TTTTTTAA
1 TTTTTTAA
12830910 ATATATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 2 0.07
26 5 0.18
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.46
Consensus pattern (25 bp):
TTTTTTAAGTTAACCTCACTACTAA
Found at i:12832061 original size:83 final size:83
Alignment explanation
Indices: 12831930--12832146 Score: 224
Period size: 83 Copynumber: 2.6 Consensus size: 83
12831920 TTAATCCTTG
* * ** * *
12831930 AACCCTGTACAT-AAAATACATTACTTTTGTTATACAAATTTGAGATCATGTTTAAAGGTACCCA
1 AACCCTATACATAAAAAAACATTACTTTTACTATACAAATTCGAAATCATGTTTAAAGGTA-CCA
12831994 AAA-AAACCCTAAACCTCA
65 AAATAAACCCTAAACCTCA
** * * * * *
12832012 AACTGTATATATAAAAAAACATTTCTTTTACTATACAAATTCGAAATCATGTTTGAGGGTACTAA
1 AACCCTATACATAAAAAAACATTACTTTTACTATACAAATTCGAAATCATGTTTAAAGGTACCAA
*
12832077 AATAAACCCTAAACCTTA
66 AATAAACCCTAAACCTCA
* ** * *
12832095 AACCCTATGCATAAAAAGGCACTACTTTTACAATACAAATTC-AAGATCATGT
1 AACCCTATACATAAAAAAACATTACTTTTACTATACAAATTCGAA-ATCATGT
12832147 GTATGGGACA
Statistics
Matches: 109, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
82 15 0.14
83 94 0.86
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (83 bp):
AACCCTATACATAAAAAAACATTACTTTTACTATACAAATTCGAAATCATGTTTAAAGGTACCAA
AATAAACCCTAAACCTCA
Found at i:12833169 original size:16 final size:17
Alignment explanation
Indices: 12833150--12833184 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
12833140 AATTAATTAA
12833150 TTAATAA-ATATGGGGG
1 TTAATAAGATATGGGGG
12833166 TTAATAATGATATGGGGG
1 TTAATAA-GATATGGGGG
12833184 T
1 T
12833185 GTGTTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (17 bp):
TTAATAAGATATGGGGG
Found at i:12833169 original size:20 final size:18
Alignment explanation
Indices: 12833146--12833184 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
12833136 AAAAAATTAA
12833146 TTAATTAATAAATATGGGGG
1 TTAA-TAAT-AATATGGGGG
*
12833166 TTAATAATGATATGGGGG
1 TTAATAATAATATGGGGG
12833184 T
1 T
12833185 GTGTTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 4 0.22
20 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (18 bp):
TTAATAATAATATGGGGG
Found at i:12834630 original size:24 final size:24
Alignment explanation
Indices: 12834594--12834640 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
12834584 AAAAAAAGTT
* * *
12834594 GATTAAGTTTTAGCTCAGTTGGTC
1 GATTAAGTCTTAGCACAATTGGTC
*
12834618 GATTGAGTCTTAGCACAATTGGT
1 GATTAAGTCTTAGCACAATTGGT
12834641 ATTAATATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (24 bp):
GATTAAGTCTTAGCACAATTGGTC
Found at i:12850324 original size:15 final size:15
Alignment explanation
Indices: 12850304--12850337 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12850294 TTTATTTTTG
* *
12850304 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
12850319 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
12850334 TTAT
1 TTAT
12850338 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:12851834 original size:20 final size:20
Alignment explanation
Indices: 12851805--12851862 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
12851795 TCTATACTGT
*
12851805 CAAGGGTATCAATACTTTGA
1 CAAGGGTATCGATACTTTGA
* *
12851825 GGAA-GGTATCGATACTATGA
1 -CAAGGGTATCGATACTTTGA
12851845 CAAGGGTATCGATACTTT
1 CAAGGGTATCGATACTTT
12851863 TGATTTTTGC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (20 bp):
CAAGGGTATCGATACTTTGA
Found at i:12857705 original size:22 final size:22
Alignment explanation
Indices: 12857680--12857731 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
12857670 GTGTCATACA
12857680 TTATAAATATTATTTTTAAAAG
1 TTATAAATATTATTTTTAAAAG
* * * *
12857702 TTATAGATTTTATTTTTATATG
1 TTATAAATATTATTTTTAAAAG
12857724 TTATAAAT
1 TTATAAAT
12857732 TATAAAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (22 bp):
TTATAAATATTATTTTTAAAAG
Found at i:12859583 original size:17 final size:17
Alignment explanation
Indices: 12859561--12859595 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
12859551 TCATAATATT
12859561 AAATGAAAACTT-TAAAA
1 AAATGAAAA-TTGTAAAA
12859578 AAATGAAAATTGTAAAA
1 AAATGAAAATTGTAAAA
12859595 A
1 A
12859596 TGATGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.66, C:0.03, G:0.09, T:0.23
Consensus pattern (17 bp):
AAATGAAAATTGTAAAA
Found at i:12864683 original size:29 final size:29
Alignment explanation
Indices: 12864638--12864693 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
12864628 TAAAAATATC
* *
12864638 GATAATGTGCTTTAGTACACTCGAACGTT
1 GATAATGTGCTTCAGTACACTCAAACGTT
12864667 GATAATGTGCTTCAGTACACTCAAACG
1 GATAATGTGCTTCAGTACACTCAAACG
12864694 CATATCCTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (29 bp):
GATAATGTGCTTCAGTACACTCAAACGTT
Found at i:12865587 original size:19 final size:20
Alignment explanation
Indices: 12865553--12865590 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
12865543 TTTTAGTAAT
*
12865553 GGAATAAATTTTTTATTATA
1 GGAATAAATATTTTATTATA
12865573 GGAATAAA-ATTTTATTAT
1 GGAATAAATATTTTATTAT
12865591 CCTAGATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (20 bp):
GGAATAAATATTTTATTATA
Found at i:12874120 original size:13 final size:13
Alignment explanation
Indices: 12874102--12874131 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
12874092 AGTTTGGCAA
12874102 TGCTTTTAAAAAG
1 TGCTTTTAAAAAG
12874115 TGCTTTTAAAAAG
1 TGCTTTTAAAAAG
12874128 TGCT
1 TGCT
12874132 GTGGAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (13 bp):
TGCTTTTAAAAAG
Found at i:12878031 original size:14 final size:13
Alignment explanation
Indices: 12878014--12878051 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
12878004 GAGAAAAAAA
12878014 AAGAGAGAAAGGAG
1 AAGA-AGAAAGGAG
12878028 AAGAAGAGAAGGAG
1 AAGAAGA-AAGGAG
12878042 AAGAAGAAAG
1 AAGAAGAAAG
12878052 AAAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAGGAG
Found at i:12878294 original size:49 final size:47
Alignment explanation
Indices: 12878210--12878296 Score: 71
Period size: 41 Copynumber: 2.0 Consensus size: 47
12878200 TATAGTTTAG
* * *
12878210 ATTAGAATTTTGTATGAATATTTTAAATTTT-T-TG--TA-TG-AAT
1 ATTATAATTTTGTATGAATATTATAATTTTTGTATGAATATTGTAAT
* * *
12878251 ATTATAATTTTTTATGAATATTGTAA-TGTTGTATGAATATTGTAAT
1 ATTATAATTTTGTATGAATATTATAATTTTTGTATGAATATTGTAAT
12878297 TATTTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
40 3 0.08
41 24 0.67
42 2 0.06
44 2 0.06
45 2 0.06
46 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (47 bp):
ATTATAATTTTGTATGAATATTATAATTTTTGTATGAATATTGTAAT
Found at i:12878355 original size:83 final size:84
Alignment explanation
Indices: 12878251--12878552 Score: 242
Period size: 96 Copynumber: 3.4 Consensus size: 84
12878241 TTGTATGAAT
* *
12878251 ATTATAA-TTTTT-TATGAATATTGTAATGTTGTATGAATATTGT-AATTATTTTATAATTAAAT
1 ATTATAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTATAAATT-TTTTAT-A-TAAAT
12878313 -TTGT-AT-TTATAGTTTTG-G
63 ATTGTAATATTATAGTTTTGTG
* *
12878331 ATTAGTAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATAT
1 ATTA-TAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTATAAATTTTTTATATAAATAT
12878396 TGTAATATTATAGTTTTGTATG
65 TGTAATATTATAGTTTTG--TG
* *
12878418 AATATTTCAATTTTTTGTATGAATATTGTAATTTTGTAATTTTGTATGAATATTAT-ATTTTTTT
1 -AT-TAT-AATTTTTTGTATG-A-A---T-A--TTGTAATTTTGTATGAATATTATAAATTTTTT
* * *
12878482 GTATGAATATTGTAATATTATAATTTTGTATG
55 ATATAAATATTGTAATATTATAGTTTTG--TG
* *
12878514 AATATTGCAATTTTTTTGTATGAATATTGTAATATTGTA
1 ATTA-T--AA-TTTTTTGTATGAATATTGTAATTTTGTA
12878553 ATTTTGTATG
Statistics
Matches: 188, Mismatches: 10, Indels: 39
0.79 0.04 0.16
Matches are distributed among these distances:
80 4 0.02
81 7 0.04
82 10 0.05
83 36 0.19
84 15 0.08
87 1 0.01
88 3 0.02
89 26 0.14
90 1 0.01
91 2 0.01
92 1 0.01
94 2 0.01
95 4 0.02
96 42 0.22
97 34 0.18
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.55
Consensus pattern (84 bp):
ATTATAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTATAAATTTTTTATATAAATATT
GTAATATTATAGTTTTGTG
Found at i:12878418 original size:27 final size:25
Alignment explanation
Indices: 12878360--12878688 Score: 264
Period size: 27 Copynumber: 13.8 Consensus size: 25
12878350 AATATTGTAA
*
12878360 TTTTGTATGAATATTATAA-A-T-T
1 TTTTGTATGAATATTGTAATATTAT
12878382 TTTTGTATGAATATTGTAATATTAT
1 TTTTGTATGAATATTGTAATATTAT
*
12878407 AGTTTTGTATGAATATT-TCA-A-T-T
1 --TTTTGTATGAATATTGTAATATTAT
* *
12878430 TTTTGTATGAATATTGTAATTTTGTAA
1 TTTTGTATGAATATTGTAA-TAT-TAT
12878457 TTTTGTATGAATA-T-T-ATATT-T
1 TTTTGTATGAATATTGTAATATTAT
12878478 TTTTGTATGAATATTGTAATATTAT
1 TTTTGTATGAATATTGTAATATTAT
*
12878503 AATTTTGTATGAATATTG-CA-ATT-T
1 --TTTTGTATGAATATTGTAATATTAT
*
12878527 TTTTGTATGAATATTGTAATATTGTAA
1 TTTTGTATGAATATTGTAATA-T-TAT
12878554 TTTTGTATGAATA-T-T-ATA--AT
1 TTTTGTATGAATATTGTAATATTAT
*
12878574 TTTTTTATGAATATTG---TA--A-
1 TTTTGTATGAATATTGTAATATTAT
*
12878593 TGTTGTATGAATATTGTAATATTAT
1 TTTTGTATGAATATTGTAATATTAT
*
12878618 AATTTTGTATGAATATTG-CA-ATT-T
1 --TTTTGTATGAATATTGTAATATTAT
*
12878642 TTTTGTATGAATATTGTAATATTGTAA
1 TTTTGTATGAATATTGTAATA-T-TAT
12878669 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
12878689 GTGGGGATAT
Statistics
Matches: 252, Mismatches: 18, Indels: 69
0.74 0.05 0.20
Matches are distributed among these distances:
19 14 0.06
20 16 0.06
21 29 0.12
22 56 0.22
23 7 0.03
24 16 0.06
25 13 0.05
26 9 0.04
27 92 0.37
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (25 bp):
TTTTGTATGAATATTGTAATATTAT
Found at i:12878423 original size:19 final size:18
Alignment explanation
Indices: 12878399--12878455 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 18
12878389 TGAATATTGT
*
12878399 AATATTATAGTTTTGTATG
1 AATATT-TAATTTTGTATG
12878418 AATATTTCAATTTTTTGTATG
1 AATATTT-AA--TTTTGTATG
12878439 AATATTGTAATTTTGTA
1 AATATT-TAATTTTGTA
12878456 ATTTTGTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 1 0.03
19 14 0.42
21 17 0.52
22 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (18 bp):
AATATTTAATTTTGTATG
Found at i:12878449 original size:48 final size:48
Alignment explanation
Indices: 12878350--12878735 Score: 397
Period size: 48 Copynumber: 8.1 Consensus size: 48
12878340 TTTTTGTATG
12878350 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTAT-AATTTTTTGTATGAATATTGT
* *
12878399 AATATTATAGTTTTGTATGAATATT-TCAATTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTAT-AATTTTTTGTATGAATATTGT
* *
12878447 AATTTTGTAATTTTGTATGAATATTATATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGT
* **
12878495 AATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTATAA-TTTTTTGTATGAATATTGT
12878544 AATATTGTAATTTTGTATGAATATTATAATTTTTT-TATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGT
* *
12878591 AATGTTGTATGAATATTG--T-AATATTATAA--TTTTGTATGAATATTG-
1 AATATTG--T-AATTTTGTATGAATATTATAATTTTTTGTATGAATATTGT
* *
12878636 CA-ATT-T--TTTTGTATGAATATTGTAATATTGTAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATA-T-T-ATAAT-T--TTTTGTATGAATATTGT
* * * * *
12878686 AATGTGGGGATATATTG--T-AATATTGTAATTTTTTGTATGAATATTGT
1 AATAT-TGTA-ATTTTGTATGAATATTATAATTTTTTGTATGAATATTGT
12878733 AAT
1 AAT
12878736 TATTTTATAA
Statistics
Matches: 285, Mismatches: 28, Indels: 50
0.79 0.08 0.14
Matches are distributed among these distances:
38 4 0.01
40 1 0.00
41 5 0.02
42 1 0.00
43 1 0.00
44 5 0.02
45 5 0.02
46 11 0.04
47 48 0.17
48 95 0.33
49 87 0.31
50 10 0.04
51 2 0.01
52 1 0.00
53 4 0.01
54 1 0.00
56 4 0.01
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (48 bp):
AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGT
Found at i:12878465 original size:97 final size:97
Alignment explanation
Indices: 12878350--12878593 Score: 429
Period size: 97 Copynumber: 2.5 Consensus size: 97
12878340 TTTTTGTATG
*
12878350 AATATTGTAATTTTGTATGAATATTATAAATTTTTTGTATGAATATTGTAATATTATAGTTTTGT
1 AATATTGTAATTTTGTATGAATATTAT-AATTTTTTGTATGAATATTGTAATATTATAATTTTGT
*
12878415 ATGAATATTTCAA-TTTTTTGTATGAATATTGT
65 ATGAATATTGCAATTTTTTTGTATGAATATTGT
* *
12878447 AATTTTGTAATTTTGTATGAATATTATATTTTTTTGTATGAATATTGTAATATTATAATTTTGTA
1 AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGTAATATTATAATTTTGTA
12878512 TGAATATTGCAATTTTTTTGTATGAATATTGT
66 TGAATATTGCAATTTTTTTGTATGAATATTGT
12878544 AATATTGTAATTTTGTATGAATATTATAATTTTTT-TATGAATATTGTAAT
1 AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGTAAT
12878594 GTTGTATGAA
Statistics
Matches: 140, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
96 62 0.44
97 78 0.56
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.55
Consensus pattern (97 bp):
AATATTGTAATTTTGTATGAATATTATAATTTTTTGTATGAATATTGTAATATTATAATTTTGTA
TGAATATTGCAATTTTTTTGTATGAATATTGT
Found at i:12878609 original size:66 final size:66
Alignment explanation
Indices: 12878495--12878667 Score: 231
Period size: 66 Copynumber: 2.6 Consensus size: 66
12878485 TGAATATTGT
* * * *
12878495 AATATTATAA-TTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTGTAATTTTG
1 AATATTATAATTTTTTTATGAATATTGTAA---TATTGTATGAATATTGTAATATTATAATTTTG
12878559 TATG
63 TATG
*
12878563 AATATTATAATTTTTTTATGAATATTGTAATGTTGTATGAATATTGTAATATTATAATTTTGTAT
1 AATATTATAATTTTTTTATGAATATTGTAATATTGTATGAATATTGTAATATTATAATTTTGTAT
12878628 G
66 G
**
12878629 AATATTGCAATTTTTTTGTATGAATATTGTAATATTGTA
1 AATATTATAA-TTTTTT-TATGAATATTGTAATATTGTA
12878668 ATTTTGTATG
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
66 42 0.44
67 6 0.06
68 30 0.32
69 17 0.18
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (66 bp):
AATATTATAATTTTTTTATGAATATTGTAATATTGTATGAATATTGTAATATTATAATTTTGTAT
G
Found at i:12878610 original size:115 final size:115
Alignment explanation
Indices: 12878480--12878688 Score: 409
Period size: 115 Copynumber: 1.8 Consensus size: 115
12878470 TTATATTTTT
12878480 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
1 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
12878545 ATATTGTAATTTTGTATGAATATTATAATTTTTTTATGAATATTGTAATG
66 ATATTGTAATTTTGTATGAATATTATAATTTTTTTATGAATATTGTAATG
12878595 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
1 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
*
12878660 ATATTGTAATTTTGTATGAATATTGTAAT
66 ATATTGTAATTTTGTATGAATATTATAAT
12878689 GTGGGGATAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 93 1.00
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (115 bp):
TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
ATATTGTAATTTTGTATGAATATTATAATTTTTTTATGAATATTGTAATG
Found at i:12878688 original size:19 final size:19
Alignment explanation
Indices: 12878215--12878612 Score: 163
Period size: 19 Copynumber: 22.2 Consensus size: 19
12878205 TTTAGATTAG
*
12878215 AATTTTGTATGAATATTTT
1 AATTTTGTATGAATATTGT
*
12878234 AAATTTTTTGTATGAATATTAT
1 -AA--TTTTGTATGAATATTGT
*
12878256 AATTTTTTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
12878275 AATGTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
12878294 AATTATTTTAT-AATTAAATTTGT
1 AATT-TTGTATGAA-T--A-TTGT
* * *
12878317 -ATTTATAGTTTTGGAT-TAGT
1 AATTT-T-G-TATGAATATTGT
12878337 AATTTTTTGTATGAATATTGT
1 AA--TTTTGTATGAATATTGT
*
12878358 AATTTTGTATGAATATTAT
1 AATTTTGTATGAATATTGT
12878377 AAATTTT-T-TG--TA-TG-
1 -AATTTTGTATGAATATTGT
* *
12878391 AATATTG--T-AATATTAT
1 AATTTTGTATGAATATTGT
*
12878407 AGTTTTGTATGAATATT-T
1 AATTTTGTATGAATATTGT
12878425 CAATTTT-T-TG--TA-TG-
1 -AATTTTGTATGAATATTGT
* *
12878439 AATATTG--T-AATTTTGT
1 AATTTTGTATGAATATTGT
*
12878455 AATTTTGTATGAATATTAT
1 AATTTTGTATGAATATTGT
*
12878474 -ATTTT-TTTG--TA-TG-
1 AATTTTGTATGAATATTGT
* *
12878487 AATATTG--T-AATATTAT
1 AATTTTGTATGAATATTGT
*
12878503 AATTTTGTATGAATATTGC
1 AATTTTGTATGAATATTGT
*
12878522 AATTTT-TTTG--TA-TG-
1 AATTTTGTATGAATATTGT
*
12878536 AATATTG--T-AATATTGT
1 AATTTTGTATGAATATTGT
*
12878552 AATTTTGTATGAATATTAT
1 AATTTTGTATGAATATTGT
*
12878571 AATTTTTTTATGAATATTGT
1 AA-TTTTGTATGAATATTGT
*
12878591 AATGTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
12878610 AAT
1 AAT
12878613 ATTATAATTT
Statistics
Matches: 285, Mismatches: 41, Indels: 105
0.66 0.10 0.24
Matches are distributed among these distances:
13 14 0.05
14 18 0.06
15 13 0.05
16 27 0.09
17 5 0.02
18 16 0.06
19 110 0.39
20 39 0.14
21 10 0.04
22 22 0.08
23 7 0.02
24 3 0.01
25 1 0.00
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.55
Consensus pattern (19 bp):
AATTTTGTATGAATATTGT
Found at i:12878736 original size:115 final size:114
Alignment explanation
Indices: 12878480--12878735 Score: 368
Period size: 115 Copynumber: 2.1 Consensus size: 114
12878470 TTATATTTTT
12878480 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
1 TTGTATG-ATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
** *
12878545 ATATTGTAATTTTGTATGAATATTATAATTTTTTTATGAATATTGTAATG
65 ATATTGTAATTTTGTATGAATATTATAATTGATATATGAATATTGTAATG
12878595 TTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
1 TTGTATG-ATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTA
* *
12878660 ATATTGTAATTTTGTATGAATATTGTAATGTGGGGATATATTGTAATATTGTAATTTT
65 ATATTGTAATTTTGTATGAATATTATAAT-T---GATATA-TG-AATATTGTAA--TG
12878718 TTGTATGAATATTGTAAT
1 TTGTATG-ATATTGTAAT
12878736 TATTTTATAA
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
115 93 0.73
116 1 0.01
119 3 0.02
120 2 0.02
121 10 0.08
123 19 0.15
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (114 bp):
TTGTATGATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTAA
TATTGTAATTTTGTATGAATATTATAATTGATATATGAATATTGTAATG
Found at i:12878929 original size:38 final size:38
Alignment explanation
Indices: 12878884--12878965 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
12878874 CATATAAAGT
12878884 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
*
12878922 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
12878960 TTATAA
1 TTATAA
12878966 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:12879043 original size:15 final size:15
Alignment explanation
Indices: 12879002--12879043 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
12878992 GTTAACTCAT
*
12879002 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
12879017 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
12879033 TTAAATTTTAT
1 TTAAATTTTAT
12879044 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:12883582 original size:15 final size:15
Alignment explanation
Indices: 12883541--12883582 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
12883531 GTTAACTCAT
*
12883541 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
12883556 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
12883572 TTAAATTTTAT
1 TTAAATTTTAT
12883583 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:12885219 original size:6 final size:6
Alignment explanation
Indices: 12885208--12885257 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
12885198 TCATGCACCG
* * * *
12885208 GAGCCA GAGCCA GACCCA GAGCCA GCGCCA GAGCCG GAGCCA GACCCA
1 GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA
12885256 GA
1 GA
12885258 ACCACATTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.30, C:0.38, G:0.32, T:0.00
Consensus pattern (6 bp):
GAGCCA
Found at i:12888634 original size:22 final size:21
Alignment explanation
Indices: 12888599--12888643 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
12888589 TACCTAATTT
*
12888599 TTTTCTTCTTTTCCTTCCTTC
1 TTTTCTTCTCTTCCTTCCTTC
12888620 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCCTTC
12888642 TT
1 TT
12888644 CTCTCTTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCCTTC
Found at i:12888651 original size:18 final size:18
Alignment explanation
Indices: 12888601--12888652 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 18
12888591 CCTAATTTTT
12888601 TTCTTCT-T-TTCCTTCC
1 TTCTTCTCTCTTCCTTCC
12888617 TTCTTTTCTTCTGCTTCCTTCC
1 TTC--TTC-TCT-CTTCCTTCC
12888639 TTCTTCTCTCTTCC
1 TTCTTCTCTCTTCC
12888653 ATTTTTGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
16 3 0.10
18 8 0.27
19 4 0.13
20 4 0.13
22 11 0.37
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (18 bp):
TTCTTCTCTCTTCCTTCC
Found at i:12888760 original size:27 final size:27
Alignment explanation
Indices: 12888730--12888836 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
12888720 TCTAATATGA
* * *
12888730 CACCACCATTGGCGCCTGCTACATAGG
1 CACCACCATTGGCGCCTCCCAAATAGG
*
12888757 CACCACCATTGGCGCTTCCCAAATAGG
1 CACCACCATTGGCGCCTCCCAAATAGG
*
12888784 CACTACCATTGGCGCCTCCCAAATAGG
1 CACCACCATTGGCGCCTCCCAAATAGG
* *
12888811 CACCACCATTGGAGCCTTCCAAATAG
1 CACCACCATTGGCGCCTCCCAAATAG
12888837 ACGCCAATAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.26, C:0.36, G:0.19, T:0.19
Consensus pattern (27 bp):
CACCACCATTGGCGCCTCCCAAATAGG
Found at i:12900688 original size:30 final size:30
Alignment explanation
Indices: 12900654--12900740 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
12900644 TTTTATTTAA
*
12900654 AAAATTACATTTCGACCCCTAAACTTTCTC
1 AAAATTACATTTCGACCCCAAAACTTTCTC
* *
12900684 AAAATTACATTTTGACCCCAAAATTTTCTC
1 AAAATTACATTTCGACCCCAAAACTTTCTC
** *
12900714 AAAATTATGTTTCAACCCCAAAACTTT
1 AAAATTACATTTCGACCCCAAAACTTT
12900741 TACTGCGTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.34
Consensus pattern (30 bp):
AAAATTACATTTCGACCCCAAAACTTTCTC
Found at i:12901095 original size:28 final size:28
Alignment explanation
Indices: 12901048--12901122 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
12901038 AACAAGAGCC
12901048 AAAGCAAAAAAAAA-AGAGAAAGAA-AAAG
1 AAAGCAAAAAAAAACA-AG-AAGAAGAAAG
*
12901076 CAAGCAAAAAAAAACAAGAAGAAGAAAG
1 AAAGCAAAAAAAAACAAGAAGAAGAAAG
*
12901104 AATAGAAAAAAGAAAACAA
1 AA-AGCAAAAA-AAAACAA
12901123 CAAAAGAGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.12
28 20 0.50
29 8 0.20
30 7 0.17
ACGTcount: A:0.76, C:0.07, G:0.16, T:0.01
Consensus pattern (28 bp):
AAAGCAAAAAAAAACAAGAAGAAGAAAG
Found at i:12901258 original size:12 final size:11
Alignment explanation
Indices: 12901236--12901284 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
12901226 AGGCTGAAGG
12901236 AGAAGAGAAAAA
1 AGAA-AGAAAAA
12901248 AGAGAAGAAAAA
1 AGA-AAGAAAAA
12901260 AGAAAGAAGAAA
1 AGAAAGAA-AAA
*
12901272 GGAAAAGAAAAA
1 AG-AAAGAAAAA
12901284 A
1 A
12901285 ATAATTAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 5 0.16
12 20 0.62
13 7 0.22
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AGAAAGAAAAA
Found at i:12901554 original size:12 final size:11
Alignment explanation
Indices: 12901537--12901572 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
12901527 GCCCAGCAGG
*
12901537 AAAAAAAAGGA
1 AAAAAAAAAGA
12901548 AAAAAAAAAG-
1 AAAAAAAAAGA
12901558 AAAAAAAAAGA
1 AAAAAAAAAGA
12901569 AAAA
1 AAAA
12901573 GGGTTCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:12901561 original size:9 final size:10
Alignment explanation
Indices: 12901536--12901572 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
12901526 AGCCCAGCAG
*
12901536 GAAAAAAAAG
1 GAAAAAAAAA
12901546 GAAAAAAAAAA
1 G-AAAAAAAAA
12901557 GAAAAAAAAA
1 GAAAAAAAAA
12901567 GAAAAA
1 GAAAAA
12901573 GGGTTCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:12902109 original size:17 final size:17
Alignment explanation
Indices: 12902075--12902298 Score: 147
Period size: 18 Copynumber: 12.8 Consensus size: 17
12902065 AGAAAAAAAA
12902075 TCAAAAAATTCGTG-TT
1 TCAAAAAATTCGTGTTT
12902091 TCAAAAAATTCGTGTTT
1 TCAAAAAATTCGTGTTT
12902108 TCAAAAAAATATCCCGTG-TT
1 TC-AAAAAAT-T--CGTGTTT
* *
12902128 TCATAAATTTCCGTGTTT
1 TCAAAAAATT-CGTGTTT
*
12902146 TC-AAAAATTCTTGTGTT
1 TCAAAAAATTCGTGT-TT
*
12902163 TCAAAAATTTTCGTGTTT
1 TCAAAAA-ATTCGTGTTT
*
12902181 TCAAAAATTTTCGTG-TT
1 TCAAAAA-ATTCGTGTTT
**
12902198 TCAAAAGTTTTCGTG-TT
1 TCAAAA-AATTCGTGTTT
* *
12902215 TCAAAAAATTCCTTTGTT
1 TCAAAAAATTCGTGT-TT
* *
12902233 TCAAAAATTATCGTGTCT
1 TCAAAAAAT-TCGTGTTT
*
12902251 TCAAAAAATATTGTG-TT
1 TCAAAAAAT-TCGTGTTT
*
12902268 TC-AAAATTATCGTGTTT
1 TCAAAAAAT-TCGTGTTT
*
12902285 TAAAAAAATATCGT
1 TCAAAAAAT-TCGT
12902299 ATTTCAATTG
Statistics
Matches: 170, Mismatches: 23, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
16 32 0.19
17 47 0.28
18 67 0.39
19 16 0.09
20 4 0.02
21 4 0.02
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42
Consensus pattern (17 bp):
TCAAAAAATTCGTGTTT
Found at i:12902171 original size:35 final size:34
Alignment explanation
Indices: 12902078--12902291 Score: 206
Period size: 35 Copynumber: 6.1 Consensus size: 34
12902068 AAAAAAATCA
*
12902078 AAAAATTC--GTGTTTCAAAAAATTCGTGTTTTC
1 AAAAATTCTTGTGTTTCAAAAATTTCGTGTTTTC
** *
12902110 AAAAAAATATCCCGTGTTTCATAAATTTCCGTGTTTTC
1 --AAAAAT-TCTTGTGTTTCAAAAATTT-CGTGTTTTC
12902148 AAAAATTCTTGTGTTTCAAAAATTTTCGTGTTTTC
1 AAAAATTCTTGTGTTTCAAAAA-TTTCGTGTTTTC
*
12902183 AAAAATT-TTCGTGTTTCAAAAGTTTTCGTG-TTTC
1 AAAAATTCTT-GTGTTTCAAAA-ATTTCGTGTTTTC
*
12902217 AAAAAATTCCTT-TGTTTCAAAAATTATCGTGTCTTC
1 -AAAAATT-CTTGTGTTTCAAAAATT-TCGTGTTTTC
* * *
12902253 AAAAAATATTGTGTTTC-AAAATTATCGTGTTTTA
1 AAAAATTCTTGTGTTTCAAAAATT-TCGTGTTTTC
12902287 AAAAA
1 AAAAA
12902292 ATATCGTATT
Statistics
Matches: 155, Mismatches: 12, Indels: 26
0.80 0.06 0.13
Matches are distributed among these distances:
34 36 0.23
35 83 0.54
36 12 0.08
37 15 0.10
38 9 0.06
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (34 bp):
AAAAATTCTTGTGTTTCAAAAATTTCGTGTTTTC
Found at i:12906076 original size:36 final size:36
Alignment explanation
Indices: 12906029--12906101 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
12906019 TTAAGAGCTT
12906029 ATGTTTGCTTTTTATCATTTCAATGAACATCAATGA
1 ATGTTTGCTTTTTATCATTTCAATGAACATCAATGA
12906065 ATGTTTGCTTTTTATCATTTCAATGAACATCAATGA
1 ATGTTTGCTTTTTATCATTTCAATGAACATCAATGA
12906101 A
1 A
12906102 GATGCATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (36 bp):
ATGTTTGCTTTTTATCATTTCAATGAACATCAATGA
Found at i:12908018 original size:44 final size:44
Alignment explanation
Indices: 12907967--12908055 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
12907957 ATTTTCGAAG
* *
12907967 GTGAATCATCAAAAGATCAATCATGGAAGATGATTTTTGATGGT
1 GTGAATCATCAAAAGATCAATCATGGAAGATAAGTTTTGATGGT
12908011 GTGAATCATCAAAAGATCAATCATGGAAGATAAGTTTTGATGGT
1 GTGAATCATCAAAAGATCAATCATGGAAGATAAGTTTTGATGGT
12908055 G
1 G
12908056 CATCGAACGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (44 bp):
GTGAATCATCAAAAGATCAATCATGGAAGATAAGTTTTGATGGT
Found at i:12910773 original size:77 final size:77
Alignment explanation
Indices: 12910539--12911380 Score: 967
Period size: 77 Copynumber: 10.9 Consensus size: 77
12910529 TCAACTTCTG
* **
12910539 TTTT-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-TATCGAG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT-GAG
12910602 GTATTTTTTTAAAT
65 GTA-TTTTTTAAAT
* * *
12910616 TTCTATTTTTTTCAAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACACGCT
1 TT-T-TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
*
12910680 GAGGTATTTTTAAAAT
62 GAGGTATTTTTTAAAT
* * *
12910696 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCAGGTCACACACTGAGG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
12910761 TATTTTTTAAAT
66 TATTTTTTAAAT
* * * * * *
12910773 TTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCT-TGGACACATGCCG
1 TT-T-TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
**
12910837 TTGTATTTCTTTTAAAT
63 AGGTA-TT-TTTTAAAT
* *
12910854 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
*
12910919 TA-TTTTTCAAT
66 TATTTTTTAAAT
** *
12910930 TGCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGT--CATGCTGAG
1 TTTTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
*
12910992 GTA-TTTTTCAAT
65 GTATTTTTTAAAT
* * * * * *
12911004 TTCTGCTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCATTGGGTCACATGCTGAGG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
12911069 TATTTCTTTTAAAT
66 TA-TT-TTTTAAAT
* * * *
12911083 TTTTGTTTTTCAAAAATCAAGTCATATTGCAAGAGGTGAGTTGAGCCTCGGGT--CATGCTGATG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
*
12911146 TATTTCTTTTAAAC
66 TA-TT-TTTTAAAT
* * * *
12911160 TTCTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACACCGAGG
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
12911225 TATTTTTTAAAT
66 TATTTTTTAAAT
* * *
12911237 TTCTT-TTTTTCAAAAA-CTAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGTCGCACGCTGA
1 TT-TTGTTTTTCAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
*
12911300 GGTA--TTTTAAGT
64 GGTATTTTTTAAAT
* * * * * *
12911312 TTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCGCACGCCGAGC
1 TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
12911377 TATT
66 TATT
12911381 CTCGATTTTT
Statistics
Matches: 667, Mismatches: 70, Indels: 56
0.84 0.09 0.07
Matches are distributed among these distances:
73 40 0.06
74 27 0.04
75 66 0.10
76 62 0.09
77 207 0.31
78 49 0.07
79 101 0.15
80 55 0.08
81 22 0.03
82 38 0.06
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (77 bp):
TTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
TATTTTTTAAAT
Found at i:12911112 original size:229 final size:229
Alignment explanation
Indices: 12910541--12911380 Score: 1047
Period size: 229 Copynumber: 3.6 Consensus size: 229
12910531 AACTTCTGTT
** *
12910541 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAT-ATCGAGGTA
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCT-GAGGTA
* *
12910605 TTTTTTTAAATTTCTATTTTTTTCAAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTC-
65 TTTTTTTAAATTT-T-TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* * *
12910669 GGACACACGCTGAGGTATTTTTAAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
126 GGTCACACGCCGAGGTATTTTT-AAA-TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
*
12910734 ATTTGAGCCTCAGGTCACACACTGAGGTATTTTTTAAATTTC
189 AGTTGAGCCTCAGGT-ACACACTGAGGTATTTTTTAAATTTC
* * * **
12910776 TATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTT-GGACACATGCCGTTG
1 --TTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCTGAGG
*
12910840 TATTTCTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
63 TATTT-TTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
12910905 GTCACACGCCGAGGTATTTTTCAATTGCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
127 GTCACACGCCGAGGTATTTTTAAATT-CTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
** *
12910970 GTTGAGCCTC-GGT-CATGCTGAGGTA-TTTTTCAATTTC
190 GTTGAGCCTCAGGTACACACTGAGGTATTTTTTAAATTTC
** * *
12911007 TGCTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCATTGGGTCACATGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCTGAGGTAT
* *
12911072 TTCTTTTAAATTTTTGTTTTTCAAAAATCAAGTCATATTGCAAGAGGTGAGTTGAGCCTCGGGT-
66 TT-TTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* * * *
12911136 -CATGCTGATGTATTTCTTTTAAACTTCTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAG
130 ACACGCCGAGGTA--T-TTTTAAA-TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
* *
12911200 TTGAGCCTCGGGTCACACACCGAGGTATTTTTTAAATTTC
191 TTGAGCCTCAGGT-ACACACTGAGGTATTTTTTAAATTTC
* * *
12911240 TTTTTTTCAAAAA-CTAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGTCGCACGCTGAGGTA
1 TTTTTTTCAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCTGAGGTA
* * * *
12911304 ---TTTTAAGTTTCTGTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTC
65 TTTTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* *
12911366 GCACGCCGAGCTATT
130 ACACGCCGAGGTATT
12911381 CTCGATTTTT
Statistics
Matches: 530, Mismatches: 55, Indels: 45
0.84 0.09 0.07
Matches are distributed among these distances:
227 9 0.02
228 36 0.07
229 181 0.34
230 12 0.02
231 21 0.04
232 20 0.04
233 68 0.13
234 44 0.08
235 63 0.12
236 7 0.01
237 23 0.04
238 46 0.09
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (229 bp):
TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCTGAGGTAT
TTTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
CACGCCGAGGTATTTTTAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGTACACACTGAGGTATTTTTTAAATTTC
Found at i:12911204 original size:156 final size:153
Alignment explanation
Indices: 12910543--12911359 Score: 1015
Period size: 156 Copynumber: 5.3 Consensus size: 153
12910533 CTTCTGTTTT
*
12910543 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATA-TCGAGGTATT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACT-GAGGTA-T
* *
12910607 TTTTTAAATTTCTATTTTTTTCAAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGA
64 TTTTTAAATTTCT-TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-
** * * *
12910672 CACACGCTGAGGTATTTTTAAAATTTTTG
125 GTCATGCTGAGGTATTTTTTAAATTTCTG
*
12910701 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCCTCAGGTCACACACTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTT
* * * **
12910766 TTTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGACAC
66 TTTAAATTTCT-TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GTC
* ** *
12910831 ATGCCGTTGTATTTCTTTTAAATTTTTG
128 ATGCTGAGGTA-TT-TTTTAAATTTCTG
* *
12910859 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTA-TT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTT
* *
12910923 TTTCAATTGC-TGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCAT
66 TTTAAATTTCTTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
*
12910986 GCTGAGGTA-TTTTTCAATTTCTG
130 GCTGAGGTATTTTTTAAATTTCTG
* * * ** **
12911009 CTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCATTGGGTCACATGCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTA-TT
* *
12911074 CTTTTAAATTT-TTGTTTTTCAAAAATCAAGTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCA
65 -TTTTAAATTTCTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
12911138 TGCTGATGTATTTCTTTTAAACTTCTG
129 TGCTGAGGTA-TT-TTTTAAATTTCTG
* * *
12911165 TTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACACCGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTT
* *
12911230 TTTAAATTTCTT-TTTTTCAAAAA-CTAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGTCGC
66 TTTAAATTTCTTGTTTTTCAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--C
* *
12911293 ACGCTGAGGTA--TTTTAAGTTTCTG
128 ATGCTGAGGTATTTTTTAAATTTCTG
*
12911317 TTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
12911360 TGGGTCGCAC
Statistics
Matches: 588, Mismatches: 55, Indels: 38
0.86 0.08 0.06
Matches are distributed among these distances:
150 66 0.11
151 1 0.00
152 95 0.16
153 34 0.06
154 53 0.09
155 42 0.07
156 132 0.22
157 35 0.06
158 129 0.22
159 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (153 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTT
TTTAAATTTCTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCATG
CTGAGGTATTTTTTAAATTTCTG
Found at i:12912039 original size:17 final size:17
Alignment explanation
Indices: 12912019--12912057 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
12912009 GGGAAGAAGA
12912019 AGAAAGAAGGAAAGGAG
1 AGAAAGAAGGAAAGGAG
* * *
12912036 AGAAAGGAGGGAAGGGG
1 AGAAAGAAGGAAAGGAG
12912053 AGAAA
1 AGAAA
12912058 CCAGCAGCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (17 bp):
AGAAAGAAGGAAAGGAG
Found at i:12912130 original size:14 final size:13
Alignment explanation
Indices: 12912111--12912150 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
12912101 AAGGCCGAAG
12912111 GAGAAGAGAAAAAA
1 GAGAAGA-AAAAAA
*
12912125 GAGAAGAAAGAAA
1 GAGAAGAAAAAAA
12912138 GAAGAAGAAAAAA
1 G-AGAAGAAAAAA
12912151 GAAGAAAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
GAGAAGAAAAAAA
Found at i:12912146 original size:17 final size:17
Alignment explanation
Indices: 12912107--12912158 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
12912097 AGCTAAGGCC
*
12912107 GAAGGAGAAGAGAAAAAA
1 GAAGAAGAA-AGAAAAAA
*
12912125 G-AGAAGAAAGAAAGAA
1 GAAGAAGAAAGAAAAAA
* *
12912141 GAAGAAAAAAGAAGAAA
1 GAAGAAGAAAGAAAAAA
12912158 G
1 G
12912159 GGAAAGAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 8 0.29
17 19 0.68
18 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (17 bp):
GAAGAAGAAAGAAAAAA
Found at i:12912396 original size:25 final size:24
Alignment explanation
Indices: 12912328--12912404 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
12912318 CCGAGCAGTT
* *
12912328 CAGCCCAGCAGGCTCAGTCCAGTAG
1 CAGCCCAGCAGGC-CAGGCCAGCAG
12912353 CAGCCCAGCAGGCCCCCAGGCCTAGCAG
1 CAGCCCAGCAGG---CCAGGCC-AGCAG
* *
12912381 CAGCCCAACAGGCCAGCCCAGCAG
1 CAGCCCAGCAGGCCAGGCCAGCAG
12912405 AAAAAAAGGG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
24 5 0.11
25 18 0.41
27 5 0.11
28 16 0.36
ACGTcount: A:0.25, C:0.43, G:0.27, T:0.05
Consensus pattern (24 bp):
CAGCCCAGCAGGCCAGGCCAGCAG
Found at i:12912429 original size:12 final size:11
Alignment explanation
Indices: 12912414--12912465 Score: 61
Period size: 12 Copynumber: 4.5 Consensus size: 11
12912404 GAAAAAAAGG
12912414 GAAAAAAGAAAA
1 GAAAAAA-AAAA
12912426 G-AAAAAAAAA
1 GAAAAAAAAAA
12912436 GAAAGAAAAAAA
1 GAAA-AAAAAAA
12912448 GGAAAAAAAGAAA
1 -GAAAAAAA-AAA
12912461 GAAAA
1 GAAAA
12912466 GGGGTTCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.14
11 7 0.19
12 17 0.47
13 7 0.19
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:12912431 original size:22 final size:22
Alignment explanation
Indices: 12912403--12912465 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
12912393 CCAGCCCAGC
*
12912403 AGAAAAAAAGGGAAA-AAAGAAA
1 AGAAAAAAAGAGAAAGAAA-AAA
*
12912425 AGAAAAAAAAAGAAAGAAAAAA
1 AGAAAAAAAGAGAAAGAAAAAA
*
12912447 AGGAAAAAA-AGAAAGAAAA
1 AGAAAAAAAGAGAAAGAAAA
12912466 GGGGTTCAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.27
22 24 0.65
23 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AGAAAAAAAGAGAAAGAAAAAA
Found at i:12912433 original size:15 final size:14
Alignment explanation
Indices: 12912415--12912447 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
12912405 AAAAAAAGGG
12912415 AAAAAAGAAAAGAAA
1 AAAAAAG-AAAGAAA
12912430 AAAAAAGAAAGAAA
1 AAAAAAGAAAGAAA
12912444 AAAA
1 AAAA
12912448 GGAAAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAGAAA
Found at i:12912434 original size:9 final size:9
Alignment explanation
Indices: 12912415--12912466 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
12912405 AAAAAAAGGG
12912415 AAAAAAGAA
1 AAAAAAGAA
12912424 AAGAAAA-AA
1 AA-AAAAGAA
12912433 AAAGAAAG-A
1 AAA-AAAGAA
*
12912442 AAAAAAGGA
1 AAAAAAGAA
12912451 AAAAAAGAA
1 AAAAAAGAA
*
12912460 AGAAAAG
1 AAAAAAG
12912467 GGGTTCAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 5 0.14
9 28 0.76
10 4 0.11
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:12912602 original size:27 final size:26
Alignment explanation
Indices: 12912572--12912623 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12912562 TATGCTATTC
12912572 CATTTTAATATTATTGGTACTTATATG
1 CATTTTAATATT-TTGGTACTTATATG
* * *
12912599 CATTTTTATATTTTTGTATTTATAT
1 CATTTTAATATTTTGGTACTTATAT
12912624 TTTTAATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (26 bp):
CATTTTAATATTTTGGTACTTATATG
Found at i:12912979 original size:16 final size:17
Alignment explanation
Indices: 12912958--12912998 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
12912948 AAGAAAAAAA
12912958 TCAAAAAATTCATG-TT
1 TCAAAAAATTCATGTTT
*
12912974 TCAAAAAATTCGTGTTT
1 TCAAAAAATTCATGTTT
12912991 TCAAAAAA
1 TCAAAAAA
12912999 ATATCCCGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (17 bp):
TCAAAAAATTCATGTTT
Found at i:12912997 original size:18 final size:18
Alignment explanation
Indices: 12912960--12913191 Score: 103
Period size: 18 Copynumber: 13.1 Consensus size: 18
12912950 GAAAAAAATC
*
12912960 AAAAAATTCATG-TTTC-
1 AAAAAATTCGTGTTTTCA
12912976 AAAAAATTCGTGTTTTCA
1 AAAAAATTCGTGTTTTCA
12912994 AAAAAATATCCCGTG-TTTC-
1 AAAAAAT-T--CGTGTTTTCA
* *
12913013 ATAAATTTCCGTGTTTTC-
1 AAAAAATT-CGTGTTTTCA
*
12913031 -AAAAGTTCCCGTG-TTTCA
1 AAAAAATT--CGTGTTTTCA
**
12913049 AAAATTTTCGTGTTTTCA
1 AAAAAATTCGTGTTTTCA
**
12913067 AAAATTTTCGTG-TTTCA
1 AAAAAATTCGTGTTTTCA
*** *
12913084 AAAGTTTTTGTG-TTTCA
1 AAAAAATTCGTGTTTTCA
*
12913101 AAAAAATTC-TTTGTTTCA
1 AAAAAATTCGTGT-TTTCA
** *
12913119 AAAATTTTCGTGTCTTCA
1 AAAAAATTCGTGTTTTCA
12913137 AAAAATATT-GTG-TTTCA
1 AAAAA-ATTCGTGTTTTCA
** *
12913154 AAATTA-TCGTGTTTTAAA
1 AAAAAATTCGTGTTTT-CA
*
12913172 AAAAAATTCTTGTATTTCA
1 AAAAAATTCGTGT-TTTCA
12913191 A
1 A
12913192 TCAGATCACA
Statistics
Matches: 169, Mismatches: 28, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
15 1 0.01
16 16 0.09
17 57 0.34
18 62 0.37
19 22 0.13
20 7 0.04
21 4 0.02
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (18 bp):
AAAAAATTCGTGTTTTCA
Found at i:12913176 original size:35 final size:35
Alignment explanation
Indices: 12912970--12913175 Score: 168
Period size: 35 Copynumber: 5.9 Consensus size: 35
12912960 AAAAAATTCA
* *
12912970 TGTTTCAAAAA-ATTCGTGTTTTCAAAAAAATATCCCG
1 TGTTTCAAAAATTTTCGTGTTTT-AAAAAAATAT--TG
* * * ** ***
12913007 TGTTTCATAAATTTCCGTGTTTTCAAAAGTTCCCG
1 TGTTTCAAAAATTTTCGTGTTTTAAAAAAATATTG
* *
12913042 TGTTTCAAAAATTTTCGTGTTTT-CAAAAATTTTCG
1 TGTTTCAAAAATTTTCGTGTTTTAAAAAAATATT-G
* * * *
12913077 TGTTTCAAAAGTTTTTGTGTTTCAAAAAAAT-TCTT
1 TGTTTCAAAAATTTTCGTGTTTTAAAAAAATAT-TG
* *
12913112 TGTTTCAAAAATTTTCGTGTCTTCAAAAAATATTG
1 TGTTTCAAAAATTTTCGTGTTTTAAAAAAATATTG
*
12913147 TGTTTC-AAAATTATCGTGTTTTAAAAAAA
1 TGTTTCAAAAATTTTCGTGTTTTAAAAAAA
12913176 AATTCTTGTA
Statistics
Matches: 134, Mismatches: 30, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
34 24 0.18
35 78 0.58
36 8 0.06
37 15 0.11
38 9 0.07
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.43
Consensus pattern (35 bp):
TGTTTCAAAAATTTTCGTGTTTTAAAAAAATATTG
Found at i:12914353 original size:55 final size:55
Alignment explanation
Indices: 12914240--12914400 Score: 236
Period size: 55 Copynumber: 3.0 Consensus size: 55
12914230 TTCTTAATTT
* *
12914240 TTGGAATATTGCTTCTTTTGAATCGA-TTTTT-TACGTTTAAATCGATTGTCATG
1 TTGGAATATTGCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTGTTATG
* * * *
12914293 TTGGAATACTGCTTCTTCTGAAGCGATTTTTTATATGTTTAATTCGATTGTTATG
1 TTGGAATATTGCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTGTTATG
* *
12914348 TTGGAATATTACTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTA
1 TTGGAATATTGCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTGTTA
12914401 CATAACACGT
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 23 0.24
54 5 0.05
55 66 0.70
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.50
Consensus pattern (55 bp):
TTGGAATATTGCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTGTTATG
Found at i:12919713 original size:27 final size:27
Alignment explanation
Indices: 12919675--12919729 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
12919665 TTACCTTTGT
12919675 ATTGGGTTATGCTAGAGAATTAGAAAC
1 ATTGGGTTATGCTAGAGAATTAGAAAC
12919702 ATTGGGTTATGCTAGAGAATTAGAAAC
1 ATTGGGTTATGCTAGAGAATTAGAAAC
12919729 A
1 A
12919730 CTAACAAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
ATTGGGTTATGCTAGAGAATTAGAAAC
Found at i:12922058 original size:43 final size:40
Alignment explanation
Indices: 12922005--12922142 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 40
12921995 ACGTCGTTAA
*
12922005 CTTTTGCGGCGTTTATAGAAAAAACGTCGCTAAAGATCATGTT
1 CTTTAGCGGCG-TTA-AGAAAAAACG-CGCTAAAGATCATGTT
*
12922048 CTTTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGTTAA-GAAA-AAACG-CGCTAAAGATCATGTT
*
12922091 CTTTAGCGGCGCTTAGGAAGAAAACGCTGCTAAA-AGT-AGTGTT
1 CTTTAGCGGCG-TTAAGAA-AAAACGC-GCTAAAGA-TCA-TGTT
12922134 CTTTAGCGG
1 CTTTAGCGG
12922143 TGCTTATTTC
Statistics
Matches: 83, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
41 1 0.01
42 9 0.11
43 70 0.84
44 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (40 bp):
CTTTAGCGGCGTTAAGAAAAAACGCGCTAAAGATCATGTT
Found at i:12922148 original size:43 final size:43
Alignment explanation
Indices: 12922022--12922148 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
12922012 GGCGTTTATA
* *
12922022 GAAA-AAACGTCGCTAAAGATCATGTTCTTTAGCGGCGCTAAG
1 GAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
12922064 GAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 GAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
12922107 GAAGA-AAACGCTGCTAAA-AGT-AGTGTTCTTTAGCGGTGCTTA
1 GAA-ATAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
12922149 TTTCACAAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
42 6 0.08
43 70 0.91
44 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (43 bp):
GAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:12931751 original size:22 final size:22
Alignment explanation
Indices: 12931715--12931760 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
12931705 AATATTATCT
12931715 AAATCGAATCGAATCAATCAGTC
1 AAATCGAATCGAATCAAT-AGTC
*
12931738 AAATC-AATTGAATCAATAGTC
1 AAATCGAATCGAATCAATAGTC
12931759 AA
1 AA
12931761 TTGAAGTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 11 0.50
23 5 0.23
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (22 bp):
AAATCGAATCGAATCAATAGTC
Found at i:12935093 original size:13 final size:13
Alignment explanation
Indices: 12935077--12935116 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
12935067 TTTAAACTAA
12935077 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
12935090 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
12935103 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
12935116 A
1 A
12935117 ATCAAGAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:12935799 original size:15 final size:15
Alignment explanation
Indices: 12935776--12935810 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
12935766 AATTCTTGCA
12935776 TAAAATAAAATAAAT
1 TAAAATAAAATAAAT
* *
12935791 TAAATTAAATTAAAT
1 TAAAATAAAATAAAT
12935806 TAAAA
1 TAAAA
12935811 ATGAATTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAAATAAAATAAAT
Found at i:12936471 original size:23 final size:23
Alignment explanation
Indices: 12936441--12936489 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
12936431 AAATTCTCGC
12936441 ATCCGATATGCTTAGCAGCGCTA
1 ATCCGATATGCTTAGCAGCGCTA
12936464 ATCCGATATGCTTAGCAGCGCTA
1 ATCCGATATGCTTAGCAGCGCTA
12936487 ATC
1 ATC
12936490 TTAATGCCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (23 bp):
ATCCGATATGCTTAGCAGCGCTA
Found at i:12937757 original size:15 final size:14
Alignment explanation
Indices: 12937736--12937776 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
12937726 TATGTTAATA
12937736 ATTATATTATTTAT
1 ATTATATTATTTAT
12937750 ACTTATATT-TTATAT
1 A-TTATATTATT-TAT
12937765 ATTAT-TTATTTA
1 ATTATATTATTTA
12937777 GGGTATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 4 0.17
14 9 0.38
15 11 0.46
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTATATTATTTAT
Found at i:12939524 original size:12 final size:12
Alignment explanation
Indices: 12939507--12939532 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12939497 ATAAAACTAT
12939507 TAAATATATATA
1 TAAATATATATA
12939519 TAAATATATATA
1 TAAATATATATA
12939531 TA
1 TA
12939533 TATGTAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATATATATA
Found at i:12939763 original size:3 final size:3
Alignment explanation
Indices: 12939681--12939749 Score: 77
Period size: 3 Copynumber: 22.0 Consensus size: 3
12939671 TAAATGGGTA
* *
12939681 AAT AAA AAT AAT AAT AAGGT AAGT AAT AAT AA- ATAC AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA--T AA-T AAT AAT AAT A-AT AAT AAT AAT AAT
12939729 AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
12939750 TAGCTAAATA
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
2 1 0.02
3 50 0.85
4 5 0.08
5 3 0.05
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:12941914 original size:11 final size:11
Alignment explanation
Indices: 12941900--12941933 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
12941890 CTCAACAACA
12941900 TCTCAATTTCC
1 TCTCAATTTCC
*
12941911 TCTCAATTTGC
1 TCTCAATTTCC
*
12941922 TCTCACTTTCC
1 TCTCAATTTCC
12941933 T
1 T
12941934 TCCAAATTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.03, T:0.47
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:12941925 original size:22 final size:22
Alignment explanation
Indices: 12941900--12941949 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
12941890 CTCAACAACA
12941900 TCTCAATTTCC-TCTC-AATTTGC
1 TCTCAATTTCCTTC-CAAATTT-C
*
12941922 TCTCACTTTCCTTCCAAATTTC
1 TCTCAATTTCCTTCCAAATTTC
12941944 TCTCAA
1 TCTCAA
12941950 ATTCATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.20, C:0.34, G:0.02, T:0.44
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAATTTC
Found at i:12943845 original size:18 final size:18
Alignment explanation
Indices: 12943819--12943861 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
12943809 TGCCAGGTGC
*
12943819 GTATTCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
12943837 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
12943855 GTTTCCT
1 GTATCCT
12943862 TTTCCGAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.07, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:12944127 original size:21 final size:21
Alignment explanation
Indices: 12944102--12944149 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
12944092 CCAACATCGA
*
12944102 CAACCAG-ATACCCTATCGGAG
1 CAACCAGAAT-CCCCATCGGAG
*
12944123 GAACCAGAATCCCCATCGGAG
1 CAACCAGAATCCCCATCGGAG
12944144 CAACCA
1 CAACCA
12944150 CAACCCCCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.35, C:0.35, G:0.19, T:0.10
Consensus pattern (21 bp):
CAACCAGAATCCCCATCGGAG
Found at i:12944157 original size:21 final size:21
Alignment explanation
Indices: 12944116--12944157 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
12944106 CAGATACCCT
* * *
12944116 ATCGGAGGAACCAGAATCCCC
1 ATCGGAGCAACCACAACCCCC
12944137 ATCGGAGCAACCACAACCCCC
1 ATCGGAGCAACCACAACCCCC
12944158 GCCAGAAGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.40, G:0.19, T:0.07
Consensus pattern (21 bp):
ATCGGAGCAACCACAACCCCC
Found at i:12945545 original size:25 final size:25
Alignment explanation
Indices: 12945500--12945548 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
12945490 TATAGTTTTT
*
12945500 TATATTAATTATAAATGTTATAATA
1 TATATTAATTATAAATATTATAATA
12945525 TATATTATATTAT-AATATTATAAT
1 TATATTA-ATTATAAATATTATAAT
12945549 TAAACAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATATTAATTATAAATATTATAATA
Found at i:12949411 original size:21 final size:22
Alignment explanation
Indices: 12949371--12949424 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
12949361 TGGTGGTTGT
*
12949371 TGTTTGTGGTTTACGGGTTTAA
1 TGTTTATGGTTTACGGGTTTAA
12949393 TGTTTATGGTTTA-GGGTTTAA
1 TGTTTATGGTTTACGGGTTTAA
**
12949414 AATTTATGGTT
1 TGTTTATGGTT
12949425 AATGTTTACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.52
Consensus pattern (22 bp):
TGTTTATGGTTTACGGGTTTAA
Found at i:12950294 original size:23 final size:23
Alignment explanation
Indices: 12950240--12950294 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
12950230 TGACAAAAAT
*
12950240 AACAAAATAAAAAAAATTTATAC
1 AACAAAATAAAAAAAAATTATAC
*
12950263 AAAAAAATAAAAATAAAATTATA-
1 AACAAAATAAAAA-AAAATTATAC
*
12950286 AACATAATA
1 AACAAAATA
12950295 TACTAGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (23 bp):
AACAAAATAAAAAAAAATTATAC
Found at i:12951731 original size:15 final size:16
Alignment explanation
Indices: 12951711--12951746 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
12951701 GATATTTTAG
*
12951711 AATATAAATGTAAA-T
1 AATATAAATATAAATT
12951726 AATATAAATATAAATT
1 AATATAAATATAAATT
12951742 AATAT
1 AATAT
12951747 TTACAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AATATAAATATAAATT
Found at i:12952595 original size:16 final size:16
Alignment explanation
Indices: 12952542--12952604 Score: 74
Period size: 16 Copynumber: 3.9 Consensus size: 16
12952532 CGCCGCAAAC
12952542 ATATTTATAAATTTGA
1 ATATTTATAAATTTGA
* *
12952558 ATATTGATAGTATTT-A
1 ATATTTATA-AATTTGA
12952574 AGTATTTATAAATTTGA
1 A-TATTTATAAATTTGA
*
12952591 ATATTTAGAAATTT
1 ATATTTATAAATTT
12952605 ATTAAATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 26 0.67
17 13 0.33
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (16 bp):
ATATTTATAAATTTGA
Found at i:12952735 original size:28 final size:29
Alignment explanation
Indices: 12952606--12952735 Score: 77
Period size: 30 Copynumber: 4.4 Consensus size: 29
12952596 TAGAAATTTA
* *
12952606 TTAAATTTGTATAA-TTAAAAACAATATC
1 TTAAATCTGTATAATTTAAAAATAATATC
**
12952634 TTAAATCTGTATCATATTTTTAAATAATAT-
1 TTAAATCTGTAT-A-ATTTAAAAATAATATC
** * * ** * *
12952664 TATAAAAAATGGATAATTTCATTATAAAATA
1 T-T-AAATCTGTATAATTTAAAAATAATATC
*
12952695 TTAAAATTTGTATAA-TTAAAAATAATATC
1 TT-AAATCTGTATAATTTAAAAATAATATC
12952724 TTAAATCTGTAT
1 TTAAATCTGTAT
12952736 CATATTTTTA
Statistics
Matches: 75, Mismatches: 21, Indels: 12
0.69 0.19 0.11
Matches are distributed among these distances:
28 20 0.27
29 12 0.16
30 23 0.31
31 13 0.17
32 7 0.09
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (29 bp):
TTAAATCTGTATAATTTAAAAATAATATC
Found at i:12952806 original size:94 final size:92
Alignment explanation
Indices: 12952604--12952891 Score: 447
Period size: 94 Copynumber: 3.1 Consensus size: 92
12952594 TTTAGAAATT
12952604 TATT-AAATTTGTATAATTAAAAACAATATCTTAAATCTGTATCATATTTTTAAATAATATTA--
1 TATTAAAATTTGTATAATTAAAAACAATATCTTAAATCTGTATCATATTTTTAAATAATATTATT
*
12952666 TAAAAAATGGATAATTTCATTATAAAA
66 TATAAAATGGATAATTTCATTATAAAA
* *
12952693 TATTAAAATTTGTATAATTAAAAATAATATCTTAAATCTGTATCATATTTTTAAGTAATATTATT
1 TATTAAAATTTGTATAATTAAAAACAATATCTTAAATCTGTATCATATTTTTAAATAATATTA-T
*
12952758 TTATTAAAATGGATAATTTTATTATAAAA
65 TTA-TAAAATGGATAATTTCATTATAAAA
*
12952787 TATTAAAATTTGTATAATTAAAAACAATTTCTTAAATCTGTATCATATTTTTAAATAATATTATT
1 TATTAAAATTTGTATAATTAAAAACAATATCTTAAATCTGTATCATATTTTTAAATAATATTATT
* *
12952852 GAAATAAAAGGGATAATTTCATTATAAAA
66 --TATAAAATGGATAATTTCATTATAAAA
*
12952881 TGTTAAAATTT
1 TATTAAAATTT
12952892 TTAATAATGT
Statistics
Matches: 181, Mismatches: 11, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
89 4 0.02
90 56 0.31
93 4 0.02
94 116 0.64
95 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.44
Consensus pattern (92 bp):
TATTAAAATTTGTATAATTAAAAACAATATCTTAAATCTGTATCATATTTTTAAATAATATTATT
TATAAAATGGATAATTTCATTATAAAA
Found at i:12954000 original size:16 final size:17
Alignment explanation
Indices: 12953979--12954055 Score: 86
Period size: 19 Copynumber: 4.4 Consensus size: 17
12953969 ATGTTAAGCT
12953979 ATGTTAAACA-TTTTGA
1 ATGTTAAACAGTTTTGA
*
12953995 ATGTTAATCATAGTTTTGA
1 ATGTTAA--ACAGTTTTGA
*
12954014 ATGTTAAGCTATGTTTTGA
1 ATGTTAAAC-A-GTTTTGA
12954033 ATGTTAAACA-TTTTGA
1 ATGTTAAACAGTTTTGA
12954049 ATGTTAA
1 ATGTTAA
12954056 GCATATGAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
16 20 0.38
18 4 0.08
19 28 0.54
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (17 bp):
ATGTTAAACAGTTTTGA
Found at i:12954013 original size:19 final size:19
Alignment explanation
Indices: 12953989--12954060 Score: 89
Period size: 19 Copynumber: 3.9 Consensus size: 19
12953979 ATGTTAAACA
*
12953989 TTTTGAATGTTAATCATAG
1 TTTTGAATGTTAAGCATAG
12954008 TTTTGAATGTTAAGC-TATG
1 TTTTGAATGTTAAGCATA-G
*
12954027 TTTTGAATGTTAA--ACA-
1 TTTTGAATGTTAAGCATAG
12954043 TTTTGAATGTTAAGCATA
1 TTTTGAATGTTAAGCATA
12954061 TGAGATTCTG
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
16 13 0.28
18 5 0.11
19 28 0.61
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.46
Consensus pattern (19 bp):
TTTTGAATGTTAAGCATAG
Found at i:12954033 original size:38 final size:36
Alignment explanation
Indices: 12953989--12954062 Score: 105
Period size: 35 Copynumber: 2.0 Consensus size: 36
12953979 ATGTTAAACA
*
12953989 TTTTGAATGTTAATCATAGTTTTGAATGTTAAGC-TATG
1 TTTTGAATGTTAA--ACA-TTTTGAATGTTAAGCATATG
12954027 TTTTGAATGTTAAACATTTTGAATGTTAAGCATATG
1 TTTTGAATGTTAAACATTTTGAATGTTAAGCATATG
12954063 AGATTCTGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 15 0.44
36 6 0.18
38 13 0.38
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.46
Consensus pattern (36 bp):
TTTTGAATGTTAAACATTTTGAATGTTAAGCATATG
Found at i:12955525 original size:367 final size:367
Alignment explanation
Indices: 12954827--12955564 Score: 1388
Period size: 367 Copynumber: 2.0 Consensus size: 367
12954817 TTATGAATAT
*
12954827 TTTAAATTATTTAAATAATGTTCAGTTTTTTGGCACTTTCGAATTAAATTTTCTATCATATAAGA
1 TTTAAATTATTTAAATAATGTTCAGTTTTTTGACACTTTCGAATTAAATTTTCTATCATATAAGA
* *
12954892 TAACAATGTAAAATATTTAAATAATGTTCAGTTTTTTTGTTAACAAAAATGTCATATTGGTTTAT
66 TAACAATGTAAAATATTTAAATAATGCTCAGTTTTTTTGTTAACAAAAATGCCATATTGGTTTAT
12954957 ATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTGACTATTAAAAT
131 ATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTGACTATTAAAAT
** *
12955022 TTCGAGATCTTCTAAAAAATTTTTTTGACTTCGCCTCTATAAATATACCATTTTTAATATATATT
196 TTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTTTAATATATATT
12955087 AGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACTTGAACTAATTA
261 AGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACTTGAACTAATTA
12955152 CATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATT-A
326 CATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAA
12955193 TTTAAATTATTTAAATAATGTTCAGTTTTTTTGACACTTTCGAATTAAATTTTCTATCATATAAG
1 TTTAAATTATTTAAATAATGTTCAG-TTTTTTGACACTTTCGAATTAAATTTTCTATCATATAAG
* *
12955258 ATAACAATGTAAATTATTTAAATAATGCTCAGTTTTTTTGTTAAGAAAAATGCCATATTGGTTTA
65 ATAACAATGTAAAATATTTAAATAATGCTCAGTTTTTTTGTTAACAAAAATGCCATATTGGTTTA
12955323 TATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTGACTATTAAAA
130 TATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTGACTATTAAAA
12955388 TTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTTTAATATATAT
195 TTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTTTAATATATAT
12955453 TAGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACTTGAACTAATT
260 TAGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACTTGAACTAATT
12955518 ACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAA
325 ACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAA
12955561 TTTA
1 TTTA
12955565 TTAATTTTAT
Statistics
Matches: 362, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
366 25 0.07
367 332 0.92
368 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (367 bp):
TTTAAATTATTTAAATAATGTTCAGTTTTTTGACACTTTCGAATTAAATTTTCTATCATATAAGA
TAACAATGTAAAATATTTAAATAATGCTCAGTTTTTTTGTTAACAAAAATGCCATATTGGTTTAT
ATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTGACTATTAAAAT
TTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTTTAATATATATT
AGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACTTGAACTAATTA
CATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAA
Found at i:12956086 original size:420 final size:417
Alignment explanation
Indices: 12955248--12956007 Score: 1229
Period size: 420 Copynumber: 1.8 Consensus size: 417
12955238 TAAATTTTCT
12955248 ATCATATAAGATAACAATGTAAATTATTTAAATAATGCTCAGTTTTTTTGTTAAGAAAAATGCCA
1 ATCATATAAGATAACAATGTAAATTATTTAAATAATGCTCAGTTTTTTTGTTAAGAAAAATGCCA
12955313 TATTGGTTTATATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTG
66 TATTGGTTTATATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTG
12955378 ACTATTAAAATTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTT
131 ACTATTAAAATTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTT
*
12955443 TAATATATATTAGTTTTTCTAAATTTAAAAATTAATAAAAATAAAAATATTGTAGGATTTGAACT
196 TAATATATATTAGTTTTTCTAAATTTAAAAATCAATAAAAATAAAAATATTGTAGGATTTGAACT
* *
12955508 TGAACTAATTACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAATTTATTAATTTT
261 TGAACTAATAACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAATTTATTAATTTA
* * * * * * ** * *
12955573 ATATTTTTTAATTTTACTATGTACATTTTATTATTTCCATCATTTGTATTTCTATACTATTATTT
326 ATAATGTTCAAGTTTA-TATGTACATTTAATTATTTCCATCATTAGTATAACAATACAATTATTT
* ** *
12955638 AAGTTTTATTTATTGTAGGTTATTTTTAAA
390 AAATAATATTCATTGT--GTTATTTTTAAA
*
12955668 ATCATATAAGATAACAATGTAAATTATTTAAATAATGTTCAGTTTTTTTGTTAAGAAAAATGCCA
1 ATCATATAAGATAACAATGTAAATTATTTAAATAATGCTCAGTTTTTTTGTTAAGAAAAATGCCA
12955733 TATTGGTTTATATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTG
66 TATTGGTTTATATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTG
*
12955798 ACTATTAAAATTTCGAGATCTTCT-AAAAAAATTTCTGACTTCGCCTCTGTAAATATACCATTTT
131 ACTATTAAAATTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTT
12955862 TAATATATATTAGTTTTTCTAAATTTAAAAATCAATAAAAATAAAAATATTGTAGGATTTGAACT
196 TAATATATATTAGTTTTTCTAAATTTAAAAATCAATAAAAATAAAAATATTGTAGGATTTGAACT
* * * *
12955927 TGAACTAATAATATTAGTAAATTTTTTTATTTGCCACTCAACTAAAATATT-ATTTAAATT-ATT
261 TGAACTAATAACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAATTT--ATTAATT
*
12955990 TAAATAATGTTCAGGTTT
324 T-AATAATGTTCAAGTTT
12956008 TTGACACTTT
Statistics
Matches: 323, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
418 4 0.01
419 153 0.47
420 166 0.51
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (417 bp):
ATCATATAAGATAACAATGTAAATTATTTAAATAATGCTCAGTTTTTTTGTTAAGAAAAATGCCA
TATTGGTTTATATTTTAAAAATGATAAAAAATTGATTTAGTCCTTTTAAAATTATGAATATTTTG
ACTATTAAAATTTCGAGATCTTCTAAAAAAAATTTCTGACTTCGCCTCTATAAATATACCATTTT
TAATATATATTAGTTTTTCTAAATTTAAAAATCAATAAAAATAAAAATATTGTAGGATTTGAACT
TGAACTAATAACATTAGTAAAATTTTTAATTTACCACTCAACTAAAATATTAATTTATTAATTTA
ATAATGTTCAAGTTTATATGTACATTTAATTATTTCCATCATTAGTATAACAATACAATTATTTA
AATAATATTCATTGTGTTATTTTTAAA
Found at i:12956160 original size:9 final size:9
Alignment explanation
Indices: 12956146--12956662 Score: 110
Period size: 9 Copynumber: 60.4 Consensus size: 9
12956136 ATTATCACAT
12956146 CTTACATAA
1 CTTACATAA
*
12956155 CTTACATAG
1 CTTACATAA
*
12956164 CTTA-ATTA
1 CTTACATAA
*
12956172 --TACTTAA
1 CTTACATAA
12956179 CTTACATAA
1 CTTACATAA
12956188 CTTACAT-A
1 CTTACATAA
12956196 C--AC--AA
1 CTTACATAA
12956201 CTTACATAA
1 CTTACATAA
*
12956210 CTTTCATTATACA
1 C-TT-A-CATA-A
*
12956223 CATACATAA
1 CTTACATAA
12956232 CTTACATATA
1 CTTACATA-A
* *
12956242 -ATACACAA
1 CTTACATAA
* *
12956250 CAATA-TTGAA
1 C-TTACAT-AA
12956260 CTTACATAA
1 CTTACATAA
* *
12956269 TTTTCATAA
1 CTTACATAA
12956278 --TACATAA
1 CTTACATAA
*
12956285 CTTACTTAA
1 CTTACATAA
* *
12956294 TTTTCATAA
1 CTTACATAA
* *
12956303 --AAAATAA
1 CTTACATAA
12956310 CTTACATAA
1 CTTACATAA
*
12956319 CTTACAAAA
1 CTTACATAA
* * *
12956328 TTTTCGTAA
1 CTTACATAA
*
12956337 CCTACATAA
1 CTTACATAA
* *
12956346 CTTATACAA
1 CTTACATAA
*
12956355 --TACACAA
1 CTTACATAA
12956362 CTTACATAA
1 CTTACATAA
*
12956371 CTTACATCA
1 CTTACATAA
* *
12956380 TTTTCAT-A
1 CTTACATAA
*
12956388 -GTACATAA
1 CTTACATAA
*
12956396 GTTACATAA
1 CTTACATAA
*
12956405 --TA-TTGAA
1 CTTACAT-AA
12956412 CTTACATAA
1 CTTACATAA
* *
12956421 TTTTCATAA
1 CTTACATAA
12956430 --TACATAA
1 CTTACATAA
* * *
12956437 GTTACTTAT
1 CTTACATAA
* *
12956446 TTTTCATAA
1 CTTACATAA
* *
12956455 --TAAAAAA
1 CTTACATAA
12956462 CTTACATAA
1 CTTACATAA
*
12956471 CTTATATAA
1 CTTACATAA
12956480 CTT--AT-A
1 CTTACATAA
* * *
12956486 CAGTACACAG
1 C-TTACATAA
12956496 CTTACATAA
1 CTTACATAA
* *
12956505 TTTTCATAA
1 CTTACATAA
12956514 --TACATAA
1 CTTACATAA
12956521 CTTACATAA
1 CTTACATAA
12956530 -TTGATCATAA
1 CTT-A-CATAA
**
12956540 --TACAGCA
1 CTTACATAA
* *
12956547 CTAACTTAA
1 CTTACATAA
*
12956556 -TT-CACAA
1 CTTACATAA
12956563 CTTACATAA
1 CTTACATAA
*
12956572 -TATTCATAA
1 CT-TACATAA
12956581 --TACATAA
1 CTTACATAA
12956588 CTTACATAA
1 CTTACATAA
* *
12956597 TTTTCATAA
1 CTTACATAA
*
12956606 --TAAATAA
1 CTTACATAA
12956613 CTTAATGCATAA
1 CTT-A--CATAA
12956625 CTTACATAA
1 CTTACATAA
12956634 --TACATAA
1 CTTACATAA
12956641 CTTACATAA
1 CTTACATAA
*
12956650 CTTACATAG
1 CTTACATAA
12956659 CTTA
1 CTTA
12956663 ATTATACTTA
Statistics
Matches: 361, Mismatches: 92, Indels: 110
0.64 0.16 0.20
Matches are distributed among these distances:
5 2 0.01
6 7 0.02
7 71 0.20
8 14 0.04
9 230 0.64
10 21 0.06
11 3 0.01
12 11 0.03
13 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.36
Consensus pattern (9 bp):
CTTACATAA
Found at i:12956202 original size:22 final size:22
Alignment explanation
Indices: 12956177--12956239 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
12956167 AATTATACTT
12956177 AACTTACATAACTTACATACAC
1 AACTTACATAACTTACATACAC
* *
12956199 AACTTACATAACTTTCATTATAC
1 AACTTACATAACTTACA-TACAC
*
12956222 -ACATACATAACTTACATA
1 AACTTACATAACTTACATA
12956240 TAATACACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.83
23 4 0.11
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (22 bp):
AACTTACATAACTTACATACAC
Found at i:12956517 original size:16 final size:16
Alignment explanation
Indices: 12956498--12956649 Score: 67
Period size: 16 Copynumber: 10.0 Consensus size: 16
12956488 GTACACAGCT
* *
12956498 TACATAATTTTCATAA
1 TACATAACTTACATAA
12956514 TACATAACTTACATAA
1 TACATAACTTACATAA
*
12956530 T---TGA--T-CATAA
1 TACATAACTTACATAA
** * *
12956540 TACAGCACTAACTTAA
1 TACATAACTTACATAA
* *
12956556 TTCACAACTTACATAA
1 TACATAACTTACATAA
12956572 TATTCATAA--TACATAA
1 TA--CATAACTTACATAA
* *
12956588 CTTACATAATTTTCATAA
1 --TACATAACTTACATAA
*
12956606 TAAATAAC-T---TAA
1 TACATAACTTACATAA
*
12956618 TGCATAACTTACATAA
1 TACATAACTTACATAA
12956634 TACATAACTTACATAA
1 TACATAACTTACATAA
12956650 CTTACATAGC
Statistics
Matches: 100, Mismatches: 20, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
10 6 0.06
11 1 0.01
12 9 0.09
13 4 0.04
15 1 0.01
16 67 0.67
18 12 0.12
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:12956556 original size:26 final size:26
Alignment explanation
Indices: 12956499--12956557 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
12956489 TACACAGCTT
* * *
12956499 ACATAATT-TTCATAATACATAACTT
1 ACATAATTGATCATAATACAGAACTA
*
12956524 ACATAATTGATCATAATACAGCACTA
1 ACATAATTGATCATAATACAGAACTA
*
12956550 ACTTAATT
1 ACATAATT
12956558 CACAACTTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (26 bp):
ACATAATTGATCATAATACAGAACTA
Found at i:12956650 original size:25 final size:25
Alignment explanation
Indices: 12956258--12956657 Score: 190
Period size: 25 Copynumber: 15.8 Consensus size: 25
12956248 AACAATATTG
* *
12956258 AACTTACATAATTTTCATAATACAT
1 AACTTACATAACTTACATAATACAT
* * * * *
12956283 AACTTACTTAATTTTCATAAAAAAT
1 AACTTACATAACTTACATAATACAT
* * *
12956308 AACTTACATAACTTACAAAATTTTCGT
1 AACTTACATAACTTACATAA--TACAT
* * * *
12956335 AACCTACATAACTTATACAATACAC
1 AACTTACATAACTTACATAATACAT
* *
12956360 AACTTACATAACTTACATCATTTTCAT
1 AACTTACATAACTTACAT-A-ATACAT
* * *
12956387 -A-GTACATAAGTTACATAATA-TT
1 AACTTACATAACTTACATAATACAT
* *
12956409 GAACTTACATAATTTTCATAATACAT
1 -AACTTACATAACTTACATAATACAT
* * ** * * *
12956435 AAGTTACTTATTTTTCATAATAAAA
1 AACTTACATAACTTACATAATACAT
* *
12956460 AACTTACATAACTTATAT-A-ACTT
1 AACTTACATAACTTACATAATACAT
* * * *
12956483 ATACAGTACACAGCTTACATAATTTTCAT
1 A-AC-TTACATAACTTACATAA--TACAT
12956512 AA--TACATAACTTACATAATTGATCAT
1 AACTTACATAACTTACATAA-T-A-CAT
** * * * *
12956538 AA--TACAGCACTAACTTAATTCAC
1 AACTTACATAACTTACATAATACAT
*
12956561 AACTTACATAA-TATTCATAATACAT
1 AACTTACATAACT-TACATAATACAT
* * *
12956586 AACTTACATAATTTTCATAATAAAT
1 AACTTACATAACTTACATAATACAT
12956611 AACTTAATGCATAACTTACATAATACAT
1 AACTT-A--CATAACTTACATAATACAT
12956639 AACTTACATAACTTACATA
1 AACTTACATAACTTACATA
12956658 GCTTAATTAT
Statistics
Matches: 280, Mismatches: 72, Indels: 46
0.70 0.18 0.12
Matches are distributed among these distances:
22 1 0.00
23 7 0.03
24 8 0.03
25 194 0.69
26 23 0.08
27 22 0.08
28 22 0.08
29 3 0.01
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAT
Found at i:12957358 original size:9 final size:9
Alignment explanation
Indices: 12957344--12957546 Score: 80
Period size: 9 Copynumber: 23.7 Consensus size: 9
12957334 CATAATAAAA
12957344 AACTTACAT
1 AACTTACAT
*
12957353 AACTTATAT
1 AACTTACAT
12957362 AACTT--AT
1 AACTTACAT
* *
12957369 -ACAGTACAC
1 AAC-TTACAT
*
12957378 AGCTTACAT
1 AACTTACAT
* *
12957387 AATTTTCAT
1 AACTTACAT
12957396 AA--TACAT
1 AACTTACAT
12957403 AACTTACAT
1 AACTTACAT
12957412 AA-TTGATCAT
1 AACTT-A-CAT
*
12957422 AA--TACAG
1 AACTTACAT
* * *
12957429 CACTAACTT
1 AACTTACAT
*
12957438 AA-TT-CAC
1 AACTTACAT
12957445 AACTTACAT
1 AACTTACAT
*
12957454 AA-TATTCAT
1 AACT-TACAT
12957463 AA--TACAT
1 AACTTACAT
12957470 AACTTACAT
1 AACTTACAT
* *
12957479 AATTTTCAT
1 AACTTACAT
*
12957488 AA--TAAAT
1 AACTTACAT
12957495 AACTTAATGCAT
1 AACTT-A--CAT
12957507 AACTTACAT
1 AACTTACAT
12957516 AA--TACAT
1 AACTTACAT
12957523 AACTTACAT
1 AACTTACAT
12957532 AACTTACAT
1 AACTTACAT
*
12957541 AGCTTA
1 AACTTA
12957547 ATTATACTTA
Statistics
Matches: 144, Mismatches: 28, Indels: 44
0.67 0.13 0.20
Matches are distributed among these distances:
6 2 0.01
7 33 0.23
8 7 0.05
9 87 0.60
10 7 0.05
11 1 0.01
12 7 0.05
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:12957401 original size:16 final size:16
Alignment explanation
Indices: 12957382--12957533 Score: 67
Period size: 16 Copynumber: 10.0 Consensus size: 16
12957372 GTACACAGCT
* *
12957382 TACATAATTTTCATAA
1 TACATAACTTACATAA
12957398 TACATAACTTACATAA
1 TACATAACTTACATAA
*
12957414 T---TGA--T-CATAA
1 TACATAACTTACATAA
** * *
12957424 TACAGCACTAACTTAA
1 TACATAACTTACATAA
* *
12957440 TTCACAACTTACATAA
1 TACATAACTTACATAA
12957456 TATTCATAA--TACATAA
1 TA--CATAACTTACATAA
* *
12957472 CTTACATAATTTTCATAA
1 --TACATAACTTACATAA
*
12957490 TAAATAAC-T---TAA
1 TACATAACTTACATAA
*
12957502 TGCATAACTTACATAA
1 TACATAACTTACATAA
12957518 TACATAACTTACATAA
1 TACATAACTTACATAA
12957534 CTTACATAGC
Statistics
Matches: 100, Mismatches: 20, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
10 6 0.06
11 1 0.01
12 9 0.09
13 4 0.04
15 1 0.01
16 67 0.67
18 12 0.12
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:12957440 original size:26 final size:26
Alignment explanation
Indices: 12957383--12957441 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
12957373 TACACAGCTT
* * *
12957383 ACATAATT-TTCATAATACATAACTT
1 ACATAATTGATCATAATACAGAACTA
*
12957408 ACATAATTGATCATAATACAGCACTA
1 ACATAATTGATCATAATACAGAACTA
*
12957434 ACTTAATT
1 ACATAATT
12957442 CACAACTTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (26 bp):
ACATAATTGATCATAATACAGAACTA
Found at i:12957534 original size:25 final size:25
Alignment explanation
Indices: 12957218--12957541 Score: 146
Period size: 25 Copynumber: 12.8 Consensus size: 25
12957208 CAAATTTTCG
* * *
12957218 TAACCTACATAACTTATACAATACA
1 TAACTTACATAACTTACATAATACA
* * *
12957243 CAACTTACATAACTTACATCATTTTCA
1 TAACTTACATAACTTACAT-A-ATACA
* * *
12957270 T-A-GTACATAAGTTACATAATA-T
1 TAACTTACATAACTTACATAATACA
* *
12957292 TGAACTTACATAATTTTCATAATACA
1 T-AACTTACATAACTTACATAATACA
* * ** * *
12957318 TAAGTTACTTATTTTTCATAATAAA
1 TAACTTACATAACTTACATAATACA
* * *
12957343 AAACTTACATAACTTATAT-A-ACT
1 TAACTTACATAACTTACATAATACA
* * * *
12957366 TATACAGTACACAGCTTACATAATTTTCA
1 TA-AC-TTACATAACTTACATAA--TACA
12957395 TAA--TACATAACTTACATAATTGATCA
1 TAACTTACATAACTTACATAA-T-A-CA
** * * *
12957421 TAA--TACAGCACTAACTTAATTCA
1 TAACTTACATAACTTACATAATACA
* *
12957444 CAACTTACATAA-TATTCATAATACA
1 TAACTTACATAACT-TACATAATACA
* * *
12957469 TAACTTACATAATTTTCATAATAAA
1 TAACTTACATAACTTACATAATACA
12957494 TAACTTAATGCATAACTTACATAATACA
1 TAACTT-A--CATAACTTACATAATACA
12957522 TAACTTACATAACTTACATA
1 TAACTTACATAACTTACATA
12957542 GCTTAATTAT
Statistics
Matches: 222, Mismatches: 56, Indels: 42
0.69 0.17 0.13
Matches are distributed among these distances:
22 1 0.00
23 7 0.03
24 8 0.04
25 154 0.69
26 23 0.10
27 4 0.02
28 22 0.10
29 3 0.01
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (25 bp):
TAACTTACATAACTTACATAATACA
Found at i:12961478 original size:94 final size:94
Alignment explanation
Indices: 12961312--12961496 Score: 352
Period size: 94 Copynumber: 2.0 Consensus size: 94
12961302 AACAGATAGC
12961312 AATTGGATCTTCGAATGTTCTGATTACACCTGAGGATCCTACAGAAGTTCAAAGTAATTTTACAT
1 AATTGGATCTTCGAATGTTCTGATTACACCTGAGGATCCTACAGAAGTTCAAAGTAATTTTACAT
12961377 TTAATTTACATGCGTGTTGACTTATAATT
66 TTAATTTACATGCGTGTTGACTTATAATT
*
12961406 AATTTGATCTTCGAATGTTCTGATTACACCTGAGGATCCTACAGAAGTTCAAAGTAATTTTACAT
1 AATTGGATCTTCGAATGTTCTGATTACACCTGAGGATCCTACAGAAGTTCAAAGTAATTTTACAT
*
12961471 TTAATTTACATGCGTGTTGAGTTATA
66 TTAATTTACATGCGTGTTGACTTATA
12961497 GTTGATTTAT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (94 bp):
AATTGGATCTTCGAATGTTCTGATTACACCTGAGGATCCTACAGAAGTTCAAAGTAATTTTACAT
TTAATTTACATGCGTGTTGACTTATAATT
Found at i:12961756 original size:161 final size:161
Alignment explanation
Indices: 12961484--12961804 Score: 536
Period size: 161 Copynumber: 2.0 Consensus size: 161
12961474 ATTTACATGC
* *
12961484 GTGTTGAGTTATAGTTGATTTATTTTTCAAATTCTTATATTATAATATACCATTTGTAGCTGAAA
1 GTGTTGACTTATAATTGATTTATTTTTCAAATTCTTATATTATAATATACCATTTGTAGCTGAAA
*
12961549 ATGGTGGGACGCGCAGAGGTCGAGGACGCACGCTACTTAAAGAGTTATACGAGTTAGATCCGGTC
66 ATGGTGGGACGCGCAGAGGTCGAGGACGCACGCTACTTAAAGAGTTATACGAGTTAGATCCAGTC
*
12961614 GAGCGTGTCAAAGT-TGGACGAAACAGTTTTA
131 GAGCGTGTCAAAGTATGCA-GAAACAGTTTTA
* * *
12961645 GTGTTGACTTGTAATTGATTTATTTTTCAAATTTTTATATTATAATTTACCATTTGTAGCTGAAA
1 GTGTTGACTTATAATTGATTTATTTTTCAAATTCTTATATTATAATATACCATTTGTAGCTGAAA
* *
12961710 ATGGTGGGACGCGCAGAGGTCGAGGACGTACGCTACTTAGAGAGTTATACGAGTTAGATCCAGTC
66 ATGGTGGGACGCGCAGAGGTCGAGGACGCACGCTACTTAAAGAGTTATACGAGTTAGATCCAGTC
*
12961775 GAGCGTGTCAAGGTATGCAGAAACAGTTTT
131 GAGCGTGTCAAAGTATGCAGAAACAGTTTT
12961805 GGTCAGCCTG
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
161 146 0.98
162 3 0.02
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (161 bp):
GTGTTGACTTATAATTGATTTATTTTTCAAATTCTTATATTATAATATACCATTTGTAGCTGAAA
ATGGTGGGACGCGCAGAGGTCGAGGACGCACGCTACTTAAAGAGTTATACGAGTTAGATCCAGTC
GAGCGTGTCAAAGTATGCAGAAACAGTTTTA
Found at i:12966668 original size:5 final size:5
Alignment explanation
Indices: 12966658--12966683 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
12966648 AATTCTTGCA
12966658 TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT T
12966684 GAAAATGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:12970518 original size:23 final size:23
Alignment explanation
Indices: 12970492--12970544 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
12970482 AGCATTGAAT
* *
12970492 TTAATTTAATAAAATCAT-TTAAA
1 TTAAATTAA-AAAAACATGTTAAA
*
12970515 TTAAATTAAAAAAACTTGTTAAA
1 TTAAATTAAAAAAACATGTTAAA
12970538 TTAAATT
1 TTAAATT
12970545 TTGTTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (23 bp):
TTAAATTAAAAAAACATGTTAAA
Found at i:12970836 original size:17 final size:17
Alignment explanation
Indices: 12970799--12970837 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
12970789 TAAAAATTAT
* * *
12970799 TTTAATTATTTTGTAAT
1 TTTACTTATTTTCTAAA
12970816 TTTACTTATTTTCTAAA
1 TTTACTTATTTTCTAAA
12970833 TTTAC
1 TTTAC
12970838 AGGGACAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTACTTATTTTCTAAA
Done.