Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 44 of 182
Found at i:14002951 original size:21 final size:21
Alignment explanation
Indices: 14002927--14002974 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
14002917 AAAAATTTGG
14002927 AAATGATTATGA-TTTTCTCCA
1 AAATGATTATGACTTTT-TCCA
14002948 AAATGATTATGACTTTTTCCA
1 AAATGATTATGACTTTTTCCA
14002969 AAATGA
1 AAATGA
14002975 AAATGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (21 bp):
AAATGATTATGACTTTTTCCA
Found at i:14002977 original size:6 final size:6
Alignment explanation
Indices: 14002968--14003020 Score: 88
Period size: 6 Copynumber: 8.5 Consensus size: 6
14002958 GACTTTTTCC
14002968 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATGG AGAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAAT-G A-AAATG
14003018 AAA
1 AAA
14003021 TCTTTCGGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 37 0.82
7 4 0.09
8 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:14002980 original size:21 final size:21
Alignment explanation
Indices: 14002935--14002980 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14002925 GGAAATGATT
**
14002935 ATGATTTTCTCCAAAATGATT
1 ATGATTTTCTCCAAAATGAAA
14002956 ATGACTTTT-TCCAAAATGAAA
1 ATGA-TTTTCTCCAAAATGAAA
14002977 ATGA
1 ATGA
14002981 AAATGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (21 bp):
ATGATTTTCTCCAAAATGAAA
Found at i:14004282 original size:17 final size:17
Alignment explanation
Indices: 14004260--14004314 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 17
14004250 CTTCTTTTTA
14004260 ATTTTAATTTTGTGATT
1 ATTTTAATTTTGTGATT
*
14004277 ATTTTAAATAACTTTTTGATT
1 ATTTT-AAT---TTTGTGATT
*
14004298 ATTTTAATATTGTGATT
1 ATTTTAATTTTGTGATT
14004315 TAAATAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 12 0.39
18 3 0.10
20 3 0.10
21 13 0.42
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (17 bp):
ATTTTAATTTTGTGATT
Found at i:14004290 original size:38 final size:39
Alignment explanation
Indices: 14004238--14004314 Score: 97
Period size: 38 Copynumber: 2.0 Consensus size: 39
14004228 TTGTAATAAG
*
14004238 TTTTCAAAGTAACTTCTTT-TTAATTTTAATTTTGTGATTA
1 TTTTCAAAGTAACTT-TTTATT-ATTTTAATATTGTGATTA
14004278 TTTT-AAA-TAACTTTTTGATTATTTTAATATTGTGATT
1 TTTTCAAAGTAACTTTTT-ATTATTTTAATATTGTGATT
14004315 TAAATAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
37 3 0.09
38 22 0.65
39 5 0.15
40 4 0.12
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (39 bp):
TTTTCAAAGTAACTTTTTATTATTTTAATATTGTGATTA
Found at i:14006651 original size:40 final size:40
Alignment explanation
Indices: 14006596--14006677 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
14006586 TGCATGTATA
14006596 ATCAAATGTGAATAACAATGAAAGCACATAGAAAATGAAT
1 ATCAAATGTGAATAACAATGAAAGCACATAGAAAATGAAT
14006636 ATCAAATGTGAATAACAATGAAAGCACATAGAAAATGAAT
1 ATCAAATGTGAATAACAATGAAAGCACATAGAAAATGAAT
14006676 AT
1 AT
14006678 ATCTATATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.55, C:0.10, G:0.15, T:0.21
Consensus pattern (40 bp):
ATCAAATGTGAATAACAATGAAAGCACATAGAAAATGAAT
Found at i:14009895 original size:17 final size:18
Alignment explanation
Indices: 14009869--14009914 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
14009859 ATAGCCTGAA
*
14009869 TATT-TTATAACTCTTAT
1 TATTATTATAAATCTTAT
*
14009886 T-TTATTATAAATTTTAT
1 TATTATTATAAATCTTAT
*
14009903 TATTATTTTAAA
1 TATTATTATAAA
14009915 GACATTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.08
17 13 0.54
18 9 0.38
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATTATAAATCTTAT
Found at i:14010054 original size:12 final size:12
Alignment explanation
Indices: 14010037--14010075 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14010027 ATATATTATA
*
14010037 TATATATAAAAT
1 TATATAAAAAAT
14010049 TATATAAAAAAAT
1 TATAT-AAAAAAT
14010062 TATATAAAAAAT
1 TATATAAAAAAT
14010074 TA
1 TA
14010076 ATACAGGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TATATAAAAAAT
Found at i:14010060 original size:13 final size:13
Alignment explanation
Indices: 14010044--14010072 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14010034 ATATATATAT
14010044 AAAATTATATAAA
1 AAAATTATATAAA
14010057 AAAATTATATAAA
1 AAAATTATATAAA
14010070 AAA
1 AAA
14010073 TTAATACAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTATATAAA
Found at i:14010756 original size:18 final size:19
Alignment explanation
Indices: 14010723--14010758 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14010713 TTTTTAAATT
14010723 AAAAATTATCAAATTTAAC
1 AAAAATTATCAAATTTAAC
*
14010742 AAAAATTA-CATATTTAA
1 AAAAATTATCAAATTTAA
14010759 ATTTTAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTATCAAATTTAAC
Found at i:14011953 original size:41 final size:41
Alignment explanation
Indices: 14011889--14011971 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
14011879 TTCTGGAGAA
* * *
14011889 ATTCTACAAAGTTTTCGTAGGCCTCTTCTAGGGGTGAAGTC
1 ATTCCACAAAGTTCTCGTAGGCCTCCTCTAGGGGTGAAGTC
* *
14011930 ATTCCACAAAGTTCTGGTTGGCCTCCTCTAGGGGTGAAGTC
1 ATTCCACAAAGTTCTCGTAGGCCTCCTCTAGGGGTGAAGTC
14011971 A
1 A
14011972 AAAAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
ATTCCACAAAGTTCTCGTAGGCCTCCTCTAGGGGTGAAGTC
Found at i:14012055 original size:15 final size:15
Alignment explanation
Indices: 14012035--14012063 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14012025 GTAATTTTAT
14012035 GATTTTAATAATTTG
1 GATTTTAATAATTTG
14012050 GATTTTAATAATTT
1 GATTTTAATAATTT
14012064 TTAAAGGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
GATTTTAATAATTTG
Found at i:14016899 original size:13 final size:14
Alignment explanation
Indices: 14016883--14016924 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
14016873 ATGATTTATT
14016883 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
14016896 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
14016911 ATTTTAAATAATAT
1 ATTTT-AATAATAT
14016925 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:14016909 original size:16 final size:16
Alignment explanation
Indices: 14016887--14016923 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
14016877 TTTATTATTT
14016887 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
14016904 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
14016919 TAATA
1 TAATA
14016924 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:14016976 original size:15 final size:15
Alignment explanation
Indices: 14016956--14017012 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14016946 ATTCAATATT
14016956 AATATTTTAATAATA
1 AATATTTTAATAATA
*
14016971 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
14016990 AATATATTAATAATA
1 AATATTTTAATAATA
*
14017005 AATGTTTT
1 AATATTTT
14017013 GTAGTAAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:14017488 original size:14 final size:14
Alignment explanation
Indices: 14017469--14017507 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14017459 CCAGAAATAT
*
14017469 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
14017483 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
14017497 AAGTCATTTTC
1 AAATCATTTTC
14017508 AGTGAAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:14023950 original size:89 final size:90
Alignment explanation
Indices: 14023846--14024013 Score: 259
Period size: 90 Copynumber: 1.9 Consensus size: 90
14023836 GGGGAAGCAA
* * *
14023846 AATTAAGTTGCATATT-TTTATAAGAGCTAAAATGT-AATATTACTATTTTAATAGCTTATATCT
1 AATTAAGTTGCATATTAATTATAAAAGCTAAAATGTAAAT-TTACTATTTTAATAACTTATATCT
*
14023909 TTATAATTTTTTAAAACATGGAGAGG
65 TTATAATGTTTTAAAACATGGAGAGG
* *
14023935 AATTAAGTTGTATATTAATTATAAAAGCTAAAATGTAAATTTACTATTTTAATAATTTATATCTT
1 AATTAAGTTGCATATTAATTATAAAAGCTAAAATGTAAATTTACTATTTTAATAACTTATATCTT
14024000 TATAATGTTTTAAA
66 TATAATGTTTTAAA
14024014 GGATCAAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
89 15 0.21
90 53 0.75
91 3 0.04
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (90 bp):
AATTAAGTTGCATATTAATTATAAAAGCTAAAATGTAAATTTACTATTTTAATAACTTATATCTT
TATAATGTTTTAAAACATGGAGAGG
Found at i:14026940 original size:33 final size:31
Alignment explanation
Indices: 14026868--14026941 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 31
14026858 TGTCAACATT
14026868 TAATTATTTTTTTAAATTTAAAAAATATTAAA
1 TAATT-TTTTTTTAAATTTAAAAAATATTAAA
* *
14026900 AATATTTTTTTTATAAATTTTTAAATAAT-TTAAA
1 TA-ATTTTTTTT-TAAA--TTTAAAAAATATTAAA
14026934 TAATTTTT
1 TAATTTTT
14026942 AATTTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
32 7 0.20
33 13 0.37
34 6 0.17
35 9 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
TAATTTTTTTTTAAATTTAAAAAATATTAAA
Found at i:14029687 original size:29 final size:27
Alignment explanation
Indices: 14029646--14029700 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
14029636 ACTCTTCACA
* *
14029646 ATTTTAAAATTTAGTCCCTGTACTTTG
1 ATTTTAAAATTTAGTACCTCTACTTTG
14029673 ATTTTCAATAATTTAGTACCTCTACTTT
1 ATTTT-AA-AATTTAGTACCTCTACTTT
14029701 TCAAATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 2 0.08
29 17 0.71
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.49
Consensus pattern (27 bp):
ATTTTAAAATTTAGTACCTCTACTTTG
Found at i:14034364 original size:29 final size:28
Alignment explanation
Indices: 14034332--14034401 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 28
14034322 ATGAAATGAG
14034332 AATATAAAAAATAATA-AAAGAAATAATAA
1 AATATAAAAAATAATATAAA-AAA-AATAA
* *
14034361 AATA-ACGAAAATAATATAAAAAAAGTAA
1 AATATA-AAAAATAATATAAAAAAAATAA
14034389 AA-ATAAAATAATA
1 AATATAAAA-AATA
14034402 GCGATAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
27 3 0.09
28 12 0.35
29 16 0.47
30 3 0.09
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.20
Consensus pattern (28 bp):
AATATAAAAAATAATATAAAAAAAATAA
Found at i:14034372 original size:17 final size:17
Alignment explanation
Indices: 14034348--14034399 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
14034338 AAAAATAATA
14034348 AAAG-AAATAATAAAAT
1 AAAGAAAATAATAAAAT
* *
14034364 AACGAAAATAATATAAAA
1 AAAGAAAATAATA-AAAT
*
14034382 AAAGTAAA-AATAAAAT
1 AAAGAAAATAATAAAAT
14034398 AA
1 AA
14034400 TAGCGATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 8 0.28
17 12 0.41
18 9 0.31
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAGAAAATAATAAAAT
Found at i:14036459 original size:89 final size:88
Alignment explanation
Indices: 14036253--14036506 Score: 310
Period size: 88 Copynumber: 2.9 Consensus size: 88
14036243 TTGTAGCTTT
* * * * * * *
14036253 AATCTGTTCCATTACAACTTTAGGGAAATAAGATTTATAGCTTCAATTTATTCCACTGCAACTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCCACTGAAACTTC
14036318 AGGGAGATAAAACTCGTAACTTC
66 AGGGAGATAAAACTCGTAACTTC
* * * * * * *
14036341 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCTACTGAAACTTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCCACTGAAACTTC
* * *
14036406 AGGGAAATAAAATTCGTTATCTTC
66 AGGGAGATAAAACTCG-TAACTTC
* * *
14036430 AGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTATAACTTCAATCTTCTCCACTGCAAACTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCCACTG-AAACTT
14036495 CAGGGAGATAAA
65 CAGGGAGATAAA
14036507 GTTTATAGCT
Statistics
Matches: 137, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
88 65 0.47
89 56 0.41
90 16 0.12
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (88 bp):
AATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCCACTGAAACTTC
AGGGAGATAAAACTCGTAACTTC
Found at i:14036513 original size:45 final size:44
Alignment explanation
Indices: 14036253--14036535 Score: 255
Period size: 44 Copynumber: 6.4 Consensus size: 44
14036243 TTGTAGCTTT
* * * * * *
14036253 AATCTGTTCCATTACAACTTTAGGGAAATAAGATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTC
* ** * * **
14036297 AATTTATTCCACTGCAACTTCAGGGAGATAAAACTCGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTC
*
14036341 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTC
* * * * * * *
14036385 AACCTGCTCTACTGAAACTTTAGGGAAATAAAATTCGT-TATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TATAACTTC
* * * *
14036430 AGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTATAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTC
* * *
14036474 AATCTTCTCCACTGCAAACTTCAGGGAGATAA-AGTTTATAGCTTT
1 AATCTGCTCCACTGC-AACTTCAGGGAGATAAGA-TTTATAACTTC
*
14036519 AATCTGCTCTACTGCAA
1 AATCTGCTCCACTGCAA
14036536 TCTTATAACT
Statistics
Matches: 192, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
43 1 0.01
44 121 0.63
45 69 0.36
46 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTC
Found at i:14036525 original size:89 final size:88
Alignment explanation
Indices: 14036246--14036527 Score: 300
Period size: 89 Copynumber: 3.2 Consensus size: 88
14036236 TTGTAACTTG
* * * * * *
14036246 TAGCTTTAATCTGTTCCATTACAACTTTAGGGAAATAAGATTTATAGCTTCAAT-TTATTCCACT
1 TAGCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTT-CTCCACT
**
14036310 GC-AACTTCAGGGAGATAAAACTCG
65 GCAAACTTCAGGGAGATAAAA-TTT
* * * * * * *
14036334 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCTACTG
1 TAGCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTTCTCCACTG
* *
14036399 -AAACTTTAGGGAAATAAAATTCGT
66 CAAACTTCAGGGAGATAAAATT--T
* * *
14036423 TATCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTATAACTTCAATCTTCTCCACTG
1 TAGCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTTCTCCACTG
*
14036488 CAAACTTCAGGGAGATAAAGTTT
66 CAAACTTCAGGGAGATAAAATTT
*
14036511 ATAGCTTTAATCTGCTC
1 -TAGCTTCAATCTGCTC
14036528 TACTGCAATC
Statistics
Matches: 156, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
87 1 0.01
88 67 0.43
89 70 0.45
90 18 0.12
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (88 bp):
TAGCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTATAACTTCAATCTTCTCCACTG
CAAACTTCAGGGAGATAAAATTT
Found at i:14042598 original size:43 final size:42
Alignment explanation
Indices: 14042548--14042635 Score: 140
Period size: 43 Copynumber: 2.1 Consensus size: 42
14042538 GGTGGAGCTT
* *
14042548 TGATTCTCACCGAGATGGATGGGAAGGAGGTACCGAATCTAG
1 TGATTCTCACCGAGATGGATGGGAAGGAGGTACCAAATCCAG
*
14042590 TGNATTCTCACCGAGATGGATGGGAAGGAGTTACCAAATCCAG
1 TG-ATTCTCACCGAGATGGATGGGAAGGAGGTACCAAATCCAG
14042633 TGA
1 TGA
14042636 ACTCAGATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
42 3 0.07
43 39 0.93
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (42 bp):
TGATTCTCACCGAGATGGATGGGAAGGAGGTACCAAATCCAG
Found at i:14043667 original size:73 final size:73
Alignment explanation
Indices: 14043568--14044084 Score: 736
Period size: 73 Copynumber: 7.1 Consensus size: 73
14043558 TGATGTCTTT
* * * * ** * * *
14043568 ATTTCTATTT-TCAAAATTTAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
14043632 TAATTTCA
66 TAATTTCA
* *
14043640 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
14043705 TAATTTCA
66 TAATTTCA
** *
14043713 ATTTCAATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
14043778 TAATTTCA
66 TAATTTCA
*
14043786 ATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
14043851 TAATTTCA
66 TAATTTCA
*
14043859 ATTTCTGTTTGTCAAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGGCACGCTGAG
1 ATTTCTGTTTGTCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
14043923 GTAATTTCA
65 GTAATTTCA
* *
14043932 ATTTCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGGCACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
**
14043997 TGCTTTTCA
66 T-AATTTCA
* * *
14044006 AGTTCTACTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACATGCT
1 ATTTCT-GTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCT
*
14044069 GAGGTATTTTCA
62 GAGGTAATTTCA
14044081 ATTT
1 ATTT
14044085 ATTTTTTTCT
Statistics
Matches: 405, Mismatches: 32, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
72 10 0.02
73 321 0.79
74 13 0.03
75 15 0.04
76 46 0.11
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (73 bp):
ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TAATTTCA
Found at i:14043842 original size:146 final size:145
Alignment explanation
Indices: 14043568--14044217 Score: 757
Period size: 146 Copynumber: 4.3 Consensus size: 145
14043558 TGATGTCTTT
* * * * ** * *
14043568 ATTTCTATTTTCAAAATTTAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCAATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
* *
14043633 AATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGGCAC
66 AATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
14043698 GCTGAGGTAATTTCA
131 GCTGAGGTAATTTCA
*
14043713 ATTTCAATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 ATTTCAATTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
14043778 TAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
65 TAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
14043843 CGCTGAGGTAATTTCA
130 CGCTGAGGTAATTTCA
**
14043859 ATTTCTGTTTGTCAAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGG-CACGCTGA
1 ATTTCAATTT-TCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GGACACGCTGA
* *
14043922 GGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGG
63 GGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
**
14043987 CACGCTGAGGTGCTTTTCA
128 CACGCTGAGGT-AATTTCA
* * * *
14044006 AGTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGA
1 ATTTC-AATTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
* * * *
14044071 GGTATTTTCAATTTATTTTTTTCTATTTATATTTTTCAACAATCAACTCATATTGCGAGAGGTGA
63 GGTAATTTC-A---A----TTTC------TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGA
* * * * *
14044136 GTTTAGCCTTAAGACACGCTGAGGTATTTTCA
114 GTTGAGCCTCAGGGCACGCTGAGGTAATTTCA
* * * *
14044168 ATTT-ATATTTTCAAAAATTAATTTATATTGCGAGAGATGAGTTGAGCCTC
1 ATTTCA-ATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
14044218 GGGGCACATG
Statistics
Matches: 440, Mismatches: 41, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
145 9 0.02
146 253 0.57
147 14 0.03
148 6 0.01
149 51 0.12
150 1 0.00
153 1 0.00
157 4 0.01
159 34 0.08
160 1 0.00
161 5 0.01
162 9 0.02
163 52 0.12
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (145 bp):
ATTTCAATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
GCTGAGGTAATTTCA
Found at i:14044098 original size:14 final size:14
Alignment explanation
Indices: 14044075--14044109 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14044065 TGCTGAGGTA
*
14044075 TTTTCAATTTATTT
1 TTTTCAATTTATAT
*
14044089 TTTTCTATTTATAT
1 TTTTCAATTTATAT
14044103 TTTTCAA
1 TTTTCAA
14044110 CAATCAACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:14045085 original size:30 final size:30
Alignment explanation
Indices: 14045049--14045146 Score: 178
Period size: 30 Copynumber: 3.3 Consensus size: 30
14045039 TAGCCTTTGA
14045049 CACCACCAACTCCACTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
14045079 CACCACCAACTCCACTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
* *
14045109 CACTACCTACTCCACTAGCCACACTTGCTC
1 CACCACCAACTCCACTAGCCACACTTGCTC
14045139 CACCACCA
1 CACCACCA
14045147 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CACCACCAACTCCACTAGCCACACTTGCTC
Found at i:14046638 original size:19 final size:19
Alignment explanation
Indices: 14046614--14046651 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14046604 AATAATATGC
14046614 AAAATATTTTAAAGACAAT
1 AAAATATTTTAAAGACAAT
14046633 AAAATATTTTAAAGACAAT
1 AAAATATTTTAAAGACAAT
14046652 TTCATTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAATATTTTAAAGACAAT
Found at i:14055800 original size:31 final size:32
Alignment explanation
Indices: 14055765--14055834 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
14055755 ATTTTTTTAG
* *
14055765 TTAAATTTGGCTCTCAAC-TTTTTAAAAAAAA
1 TTAAATTTGACTATCAACTTTTTTAAAAAAAA
* * *
14055796 TTAAATTTGACTATTAACTTTTTTAAAAAGAG
1 TTAAATTTGACTATCAACTTTTTTAAAAAAAA
14055828 TTAAATT
1 TTAAATT
14055835 GTTTTTTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (32 bp):
TTAAATTTGACTATCAACTTTTTTAAAAAAAA
Found at i:14061273 original size:35 final size:35
Alignment explanation
Indices: 14061236--14061566 Score: 312
Period size: 35 Copynumber: 9.5 Consensus size: 35
14061226 TGTCAAAGTG
* *
14061236 TGAAATGTAGGTATGGTATCATCCATACCGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
14061271 TGAAACGTAGGTATGGTATCATCCATACCGAGTT-
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
* * * *
14061305 TGAAACATAGGTATGGTATTAACCATACCGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
* * * *
14061340 TGAAACATAGGTATGGTAT-TTCCATACTGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
* * *
14061374 TGAAACGTAGGTATGGCATCGTCCATACCGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
*** * * *
14061409 TGAAACGTAGGTATGACGTCGTCCATACTGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
* * * * * *
14061444 TGATACGTAAGTATGGCATCGTCTATACTGAGTTA
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
** ** *
14061479 TGAAATATAGGTATGGTATTTTCCATACCGAG-CA
1 TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
* *
14061513 TGAAAAGTAGGTATGATGT-TC-TCTATACCGAGTTA
1 TGAAACGTAGGTATG--GTATCATCCATACCGAGTTA
*
14061548 TGAAATGTAGGTATGGTAT
1 TGAAACGTAGGTATGGTAT
14061567 TTCAATGAGG
Statistics
Matches: 252, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
33 2 0.01
34 83 0.33
35 165 0.65
36 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (35 bp):
TGAAACGTAGGTATGGTATCATCCATACCGAGTTA
Found at i:14061351 original size:69 final size:70
Alignment explanation
Indices: 14061243--14061566 Score: 318
Period size: 69 Copynumber: 4.7 Consensus size: 70
14061233 GTGTGAAATG
* * *
14061243 TAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGAG-TTTG
1 TAGGTATGGTATCATCCATACCGAGTTATGAAACGTAGGTATGGTATCTTCCATACCGAGCTATG
14061307 AAACA
66 AAACA
* * * * *
14061312 TAGGTATGGTATTAACCATACCGAGTTGTGAAACATAGGTATGGTAT-TTCCATACTGAGCTATG
1 TAGGTATGGTATCATCCATACCGAGTTATGAAACGTAGGTATGGTATCTTCCATACCGAGCTATG
*
14061376 AAACG
66 AAACA
* * * *** * *
14061381 TAGGTATGGCATCGTCCATACCGAGCTATGAAACGTAGGTATGACGTCGTCCATACTGAGCTATG
1 TAGGTATGGTATCATCCATACCGAGTTATGAAACGTAGGTATGGTATCTTCCATACCGAGCTATG
* *
14061446 ATACG
66 AAACA
* * * * * ** *
14061451 TAAGTATGGCATCGTCTATACTGAGTTATGAAATATAGGTATGGTATTTTCCATACCGAGC-ATG
1 TAGGTATGGTATCATCCATACCGAGTTATGAAACGTAGGTATGGTATCTTCCATACCGAGCTATG
14061515 AAA-A
66 AAACA
* *
14061519 GTAGGTATGATGT-TC-TCTATACCGAGTTATGAAATGTAGGTATGGTAT
1 -TAGGTATG--GTATCATCCATACCGAGTTATGAAACGTAGGTATGGTAT
14061567 TTCAATGAGG
Statistics
Matches: 213, Mismatches: 37, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
68 10 0.05
69 131 0.62
70 71 0.33
71 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (70 bp):
TAGGTATGGTATCATCCATACCGAGTTATGAAACGTAGGTATGGTATCTTCCATACCGAGCTATG
AAACA
Found at i:14061701 original size:31 final size:31
Alignment explanation
Indices: 14061663--14061723 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
14061653 ATAAGTAATT
14061663 TGATCAGTGAAAAATGGTAGCTCCGGCTACC
1 TGATCAGTGAAAAATGGTAGCTCCGGCTACC
* * *
14061694 TGATCAGTGAATAGTGGTAGCTTCGGCTAC
1 TGATCAGTGAAAAATGGTAGCTCCGGCTAC
14061724 AAGTGACAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (31 bp):
TGATCAGTGAAAAATGGTAGCTCCGGCTACC
Found at i:14066485 original size:40 final size:40
Alignment explanation
Indices: 14066421--14066498 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
14066411 ATACACTATG
* *
14066421 TGGGGATAAAATCGACCCACCCATCTCTGCACACCATATA
1 TGGGGATAAAATCGACCCACCCATCCCTACACACCATATA
* * * *
14066461 TGGGGATACAATCGTCTCATCCATCCCTACACACCATA
1 TGGGGATAAAATCGACCCACCCATCCCTACACACCATA
14066499 AGGTACCGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.31, C:0.33, G:0.14, T:0.22
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCATCCCTACACACCATATA
Found at i:14067685 original size:290 final size:290
Alignment explanation
Indices: 14067158--14067737 Score: 998
Period size: 290 Copynumber: 2.0 Consensus size: 290
14067148 TTGATTGGAG
14067158 TACACACCTGGTTTCGATTGAAGCCTAACACAATCCCGAGCACTTTAAGACATATAATCAATATA
1 TACACACCTGGTTTCGATTGAAGCCTAACACAATCCCGAGCACTTTAAGACATATAATCAATATA
** ** * *
14067223 TCCAACCTATTCGAACCTCATAAATGAGTCTTTTCACTTAACCTCAAACGAAATATCCACTCAAC
66 TCCAACCTATTAAAACCTCATAAACAAGTCTTTTCACTTAACCCCAAACAAAATATCCACTCAAC
* *
14067288 GAACAATCAACTTACCCTTGAATGGAAAGTAGCAAACCCGAATCATTAAAGCGTTAATGGTTGTT
131 GAACAATCAACTTACCCTTGAATGGAAAGTAGCAAACCCGAATCATTAAAGCATTAATGGCTGTT
* *
14067353 CTTTAGCCCCTTGATCCACTCCTATCAAACAGTAGAAACCTCTTACTAGACACTTAACTCGAACA
196 CTTCAGCCCCTTGATCCACTCCTATCAAACAGCAGAAACCTCTTACTAGACACTTAACTCGAACA
14067418 ATATTCAAGTCAAGCGAAACGAAAAACTTA
261 ATATTCAAGTCAAGCGAAACGAAAAACTTA
* * * *
14067448 TACACATCTGGTTTCGATTGAAGCCTAACGCAATCCCGAGCACTTTAAGACCTATAATCAGTATA
1 TACACACCTGGTTTCGATTGAAGCCTAACACAATCCCGAGCACTTTAAGACATATAATCAATATA
* *
14067513 TCCAACCTATTAAAACCTCATAAACAAGTTTTTTCACTTAACCCCAAGCAAAATATCCACTCAAC
66 TCCAACCTATTAAAACCTCATAAACAAGTCTTTTCACTTAACCCCAAACAAAATATCCACTCAAC
*
14067578 GAACGATCAACTTACCCTTGAATGGAAAGTAGCAAACCCGAATCATTAAAGCATTAATGGCTGTT
131 GAACAATCAACTTACCCTTGAATGGAAAGTAGCAAACCCGAATCATTAAAGCATTAATGGCTGTT
14067643 CTTCAGCCCCTTGATCCACTCCTATCAAACAGCAGAAACCTCTTACTAGACACTTAACTCGAACA
196 CTTCAGCCCCTTGATCCACTCCTATCAAACAGCAGAAACCTCTTACTAGACACTTAACTCGAACA
*
14067708 ATATTCAAGTCGAGCGAAACGAAAAACTTA
261 ATATTCAAGTCAAGCGAAACGAAAAACTTA
14067738 CCAATGAGGA
Statistics
Matches: 272, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
290 272 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (290 bp):
TACACACCTGGTTTCGATTGAAGCCTAACACAATCCCGAGCACTTTAAGACATATAATCAATATA
TCCAACCTATTAAAACCTCATAAACAAGTCTTTTCACTTAACCCCAAACAAAATATCCACTCAAC
GAACAATCAACTTACCCTTGAATGGAAAGTAGCAAACCCGAATCATTAAAGCATTAATGGCTGTT
CTTCAGCCCCTTGATCCACTCCTATCAAACAGCAGAAACCTCTTACTAGACACTTAACTCGAACA
ATATTCAAGTCAAGCGAAACGAAAAACTTA
Found at i:14070560 original size:8 final size:8
Alignment explanation
Indices: 14070532--14070565 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
14070522 AAAATCTTAC
14070532 AAAAAAAG
1 AAAAAAAG
*
14070540 AAAAAGAG
1 AAAAAAAG
*
14070548 TAAAAAAG
1 AAAAAAAG
14070556 AAAAAAAG
1 AAAAAAAG
14070564 AA
1 AA
14070566 TTTTTGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:14098871 original size:2 final size:2
Alignment explanation
Indices: 14098866--14098895 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14098856 AAAAGTAAAA
*
14098866 AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14098896 TGAATGTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14100248 original size:3 final size:3
Alignment explanation
Indices: 14100240--14100423 Score: 72
Period size: 3 Copynumber: 60.7 Consensus size: 3
14100230 AAAGTAGTGC
* * *
14100240 TAA TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA
* * * * *
14100285 TAA TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
14100329 GTAA TAA TGA TAAA TTA TAA TAA TAG TGA TGA GAA TAA TAA GTGA TGA
1 -TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
* * * * * *
14100377 TAA TAA TAG TAA CAA TAG TAG TAA TAA T-A TAT TAG TAA TACA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
14100422 TA
1 TA
14100424 GAGTAGTAAA
Statistics
Matches: 136, Mismatches: 33, Indels: 24
0.70 0.17 0.12
Matches are distributed among these distances:
2 9 0.07
3 111 0.82
4 16 0.12
ACGTcount: A:0.54, C:0.02, G:0.11, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14100287 original size:36 final size:38
Alignment explanation
Indices: 14100247--14100355 Score: 102
Period size: 36 Copynumber: 2.9 Consensus size: 38
14100237 TGCTAATAAT
* *
14100247 AATAATAATAATAATAATCTATTA-AGTTATAAT-G-AA
1 AATAATAATAATAATAATATATTAGA-TAATAATAGTAA
* * *
14100283 AATAATGATAATGATGATATATTAGATAATAATAGTAA
1 AATAATAATAATAATAATATATTAGATAATAATAGTAA
* *
14100321 AATAATAAGTAATAATGATAAATT--ATAATAATAGT
1 AATAATAA-TAATAATAATATATTAGATAATAATAGT
14100356 GATGAGAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
36 26 0.43
37 13 0.21
38 9 0.15
39 13 0.21
ACGTcount: A:0.55, C:0.01, G:0.09, T:0.35
Consensus pattern (38 bp):
AATAATAATAATAATAATATATTAGATAATAATAGTAA
Found at i:14100374 original size:16 final size:16
Alignment explanation
Indices: 14100347--14100384 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14100337 GATAAATTAT
14100347 AATAAT-AGTGATGAG
1 AATAATAAGTGATGAG
*
14100362 AATAATAAGTGATGAT
1 AATAATAAGTGATGAG
14100378 AATAATA
1 AATAATA
14100385 GTAACAATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (16 bp):
AATAATAAGTGATGAG
Found at i:14100516 original size:16 final size:15
Alignment explanation
Indices: 14100487--14100529 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
14100477 TATACGTATG
*
14100487 AAAAATAATGATAGT
1 AAAAATAATAATAGT
14100502 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
14100518 AATAATAATAAT
1 AAAAATAATAAT
14100530 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:14100630 original size:3 final size:3
Alignment explanation
Indices: 14100622--14100651 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14100612 GCACTACCAT
14100622 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14100652 TAGAAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14100754 original size:3 final size:3
Alignment explanation
Indices: 14100746--14100771 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14100736 AAATATACAC
14100746 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
14100772 TTATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14101275 original size:30 final size:29
Alignment explanation
Indices: 14101239--14101314 Score: 111
Period size: 27 Copynumber: 2.7 Consensus size: 29
14101229 GATTTTTTGT
14101239 TCTTGAATCTCAAAAAAAAGAAAAATCCCC
1 TCTTGAATCTCAAAAAAAA-AAAAATCCCC
* *
14101269 TCTTGAATCT--AAAAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAAAAAAAATCCCC
14101296 TCTTGAATCTCAAAAAAAA
1 TCTTGAATCTCAAAAAAAA
14101315 TCTCTTCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 18 0.43
28 7 0.17
29 7 0.17
30 10 0.24
ACGTcount: A:0.51, C:0.18, G:0.05, T:0.25
Consensus pattern (29 bp):
TCTTGAATCTCAAAAAAAAAAAAATCCCC
Found at i:14102009 original size:44 final size:44
Alignment explanation
Indices: 14101769--14102034 Score: 210
Period size: 44 Copynumber: 6.1 Consensus size: 44
14101759 TGAGTTCTTG
* *
14101769 ATCTGCT-TCTTCGA-TCTGTT-CCTCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAACT-TGTTCCCT-ATAAGCACAGGGATGCCAA
* * *
14101812 ATCTGCTGTCTTCAACTTGTTCCTTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
*
14101856 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
14101898 ATGCTGAAATCTTCGA-TCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAACT-TG-TTC-CCTATAAGCACAGGGATGCCAA
* * *
14101944 TTCTACTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAA
* * *
14101988 ATCTGCTGTTTTCAACTTGTTCCCTGATAA-TAC-GGAGATGCCAA
1 ATCTGCTATCTTCAACTTGTTCCCT-ATAAGCACAGG-GATGCCAA
14102032 ATC
1 ATC
14102035 ATCTTAGATC
Statistics
Matches: 183, Mismatches: 27, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
42 3 0.02
43 23 0.13
44 132 0.72
45 24 0.13
46 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:14102518 original size:205 final size:205
Alignment explanation
Indices: 14102152--14103077 Score: 1525
Period size: 205 Copynumber: 4.5 Consensus size: 205
14102142 GGGAACATCC
* * * * *
14102152 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* ** * ** *
14102217 ATCTTGCTTCAGT-ATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTGAAGTGG
66 ATC-TGCTTCAGTGA-AATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
* *
14102281 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCA
129 AGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
14102346 TCGTAATCACGT
194 TCGTAATCACGT
*
14102358 GAAAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
*
14102423 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGTTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
*
14102488 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
131 ATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
14102553 GTAATCACGT
196 GTAATCACGT
* *
14102563 GAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATGCCAAACTATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
14102628 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
*
14102693 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
131 ATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
14102758 GTAATCACGT
196 GTAATCACGT
* *
14102768 GAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATGCCAAACTATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
14102833 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAT
66 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
* *
14102898 ATGCCAAACTTCGATTTATTCTCTGACAATACAGAGACGACAAATTATCTTAGATTTGCTTCATC
131 ATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
*
14102963 ATAATCACGT
196 GTAATCACGT
*
14102973 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * *
14103038 ATCTGCTTCAGT-ATAA-CATCTGTAGGCCAGATCTGTTATG
66 ATCTGCTTCAGTGA-AATCATCTGAAGGCGAGATCTGCTATG
14103078 CTGCGGCCTA
Statistics
Matches: 682, Mismatches: 36, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
204 21 0.03
205 598 0.88
206 63 0.09
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
ATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
GTAATCACGT
Found at i:14112345 original size:36 final size:33
Alignment explanation
Indices: 14112303--14112386 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 33
14112293 GGGTAAAAAT
14112303 AAATATATACATAATATATGCGTAATATAGTA-CTAA
1 AAATATATACATAATATA--C--AATATAGTATCTAA
* * *
14112339 GAATATATATATACATATACAATATAGTATTTAA
1 AAATATATACATA-ATATACAATATAGTATCTAA
14112373 AAATATATACATAA
1 AAATATATACATAA
14112387 GATGGTATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
33 10 0.24
34 14 0.34
35 1 0.02
36 11 0.27
37 5 0.12
ACGTcount: A:0.52, C:0.07, G:0.06, T:0.35
Consensus pattern (33 bp):
AAATATATACATAATATACAATATAGTATCTAA
Found at i:14112397 original size:24 final size:23
Alignment explanation
Indices: 14112370--14112430 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
14112360 ATATAGTATT
14112370 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
14112394 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
14112418 TAAGAAATATATA
1 TAA-AAATATATA
14112431 TAACTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:14114061 original size:16 final size:16
Alignment explanation
Indices: 14114040--14114088 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 16
14114030 TTTTTTTATG
*
14114040 TTGGGCTAGTTGAGTA-
1 TTGGGCTAGGTG-GTAT
14114056 TTGGGCT-GGTGGTAT
1 TTGGGCTAGGTGGTAT
14114071 TTGGGCTAGG-GG-AT
1 TTGGGCTAGGTGGTAT
14114085 TTGG
1 TTGG
14114089 TTTGTTGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.30
15 12 0.40
16 9 0.30
ACGTcount: A:0.12, C:0.06, G:0.45, T:0.37
Consensus pattern (16 bp):
TTGGGCTAGGTGGTAT
Found at i:14114223 original size:25 final size:25
Alignment explanation
Indices: 14114189--14114236 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14114179 TCTTTACTCA
*
14114189 TTGTTGTGTAACGAGAACAGAGTTT
1 TTGTCGTGTAACGAGAACAGAGTTT
*
14114214 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACGAGAACAGAGT
14114237 AAAGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.33
Consensus pattern (25 bp):
TTGTCGTGTAACGAGAACAGAGTTT
Found at i:14114645 original size:14 final size:14
Alignment explanation
Indices: 14114626--14114655 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14114616 TTATTCTTTA
14114626 CTCGGTGTGTGATC
1 CTCGGTGTGTGATC
14114640 CTCGGTGTGTGATC
1 CTCGGTGTGTGATC
14114654 CT
1 CT
14114656 GAGGCTCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.23, G:0.33, T:0.37
Consensus pattern (14 bp):
CTCGGTGTGTGATC
Found at i:14114807 original size:74 final size:73
Alignment explanation
Indices: 14114652--14114929 Score: 346
Period size: 74 Copynumber: 3.8 Consensus size: 73
14114642 CGGTGTGTGA
* * * * * * *
14114652 TCCTGAGGCTCAATTCACCTCTAGCAATATGAATT-AATTCTTGAAAAACA-ATGATTGAAAATA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGA-AATTGAAATTA
14114715 CCTCAGCGTG
64 CCTCAGCGTG
* * *
14114725 CCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAATTAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTAC
14114790 CTCAGCGTG
65 CTCAGCGTG
* * * **
14114799 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTCGAAAACGGAGATCAAAATTACC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACC
14114863 TCAGCGTG
66 TCAGCGTG
*
14114871 TCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTATTTTGAAAGACAGAAATTG
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAA-ACAGAAATTG
14114930 GAAAGCAGAA
Statistics
Matches: 175, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
72 60 0.34
73 37 0.21
74 71 0.41
75 7 0.04
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (73 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACC
TCAGCGTG
Found at i:14114890 original size:72 final size:70
Alignment explanation
Indices: 14114652--14114909 Score: 302
Period size: 72 Copynumber: 3.6 Consensus size: 70
14114642 CGGTGTGTGA
* * * * * *
14114652 TCCTGAGGCTCAATTCACCTCTAGCAATATGAATTAATTCTTGAAAAACAATGATTGAAAA-TAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTG-AAAACGA-GA-TCAAAATTAC
14114716 CTCAGCGTG
62 CTCAGCGTG
* * * * **
14114725 CCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAATTAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGA-AAAC-GAGATCAAAATTAC
14114790 CTCAGCGTG
62 CTCAGCGTG
14114799 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCGAAAACGGAGATCAAAATTACCT
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-GAAAAC-GAGATCAAAATTACCT
14114864 CAGCGTG
64 CAGCGTG
*
14114871 TCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
14114910 ATTTTGAAAG
Statistics
Matches: 160, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
72 66 0.41
73 37 0.23
74 54 0.34
75 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (70 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACGAGATCAAAATTACCTCA
GCGTG
Found at i:14115013 original size:89 final size:89
Alignment explanation
Indices: 14114854--14115110 Score: 342
Period size: 89 Copynumber: 2.9 Consensus size: 89
14114844 AACGGAGATC
* * *
14114854 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTATTTTGA-A
1 AAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
* * *
14114918 AGACAGAAATTGGAAAGCAGAAATCG
65 A-ACAGAAATTGAAAAACAAAAATCG
*
14114944 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACGA
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA
*
14115009 ACAGAAATTGAAAAACAAAAATTG
66 ACAGAAATTGAAAAACAAAAATCG
* * *
14115033 AAAAAACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGA--TTTTTGA
1 AAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
14115095 CAAACAGAAATTGAAA
63 CAAACAGAAATTGAAA
14115111 TTACCTCAGT
Statistics
Matches: 151, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
89 109 0.72
90 5 0.03
91 35 0.23
92 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (89 bp):
AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA
ACAGAAATTGAAAAACAAAAATCG
Found at i:14115025 original size:14 final size:14
Alignment explanation
Indices: 14115008--14115037 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14114998 TTTTTTGACG
*
14115008 AACAGAAATTGAAA
1 AACAAAAATTGAAA
14115022 AACAAAAATTGAAA
1 AACAAAAATTGAAA
14115036 AA
1 AA
14115038 ACCTCAGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13
Consensus pattern (14 bp):
AACAAAAATTGAAA
Found at i:14115149 original size:164 final size:162
Alignment explanation
Indices: 14114935--14115349 Score: 516
Period size: 164 Copynumber: 2.5 Consensus size: 162
14114925 AATTGGAAAG
* *
14114935 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
14115000 TTTTGACGAACAGAAATTGAAAAACAAAAATTGAAAAAACCTCAGCATGTGAGCC-GAGGCTCAA
66 TTTTGAAGAACAGAAATTGAAAAACAAAAATCGAAAAAACCTCAGC--GTG-CCCTGAGGCTCAA
14115064 CTCACCTCTCGC-GATATGAGTTGATTTTTGACAAA
128 CTCACCTCTCGCAG-TATGAGTTGATTTTTGACAAA
* **
14115099 CAGAAATTGAAATTACCTCAGTGTTTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
* * * ** *
14115164 TTTTTTGAAGAGCAGAAATTGGAAAGCGGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
64 TTTTTTGAAGAACAGAAATTGAAAAACAAAAATCGAAAAAACCTCAGCGTGCCCTGAGGCTCAAC
* *
14115229 TCTCCTCTGGCAGTATGAGTTGATTTTTGACAAA
129 TCACCTCTCGCAGTATGAGTTGATTTTTGACAAA
* * * * *
14115263 CA-ACGATTGAAAATT-CCTCACCGTGCCCCGAGGCTCAACTCACCTCTCGTAATATAAGTTGAT
1 CAGA-AATTG-AAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
14115326 TTTTTTGAA-AAAAGAATTTGAAAA
64 TTTTTTGAAGAACAGAAATTGAAAA
14115350 TACCTCAGCA
Statistics
Matches: 217, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
161 11 0.05
162 10 0.05
163 3 0.01
164 146 0.67
165 6 0.03
166 41 0.19
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (162 bp):
CAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAGAACAGAAATTGAAAAACAAAAATCGAAAAAACCTCAGCGTGCCCTGAGGCTCAACTC
ACCTCTCGCAGTATGAGTTGATTTTTGACAAA
Found at i:14115373 original size:74 final size:74
Alignment explanation
Indices: 14115198--14115399 Score: 241
Period size: 74 Copynumber: 2.7 Consensus size: 74
14115188 AGCGGAAATC
* * * *
14115198 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCTCCTCTGGCAGTATGAGTTGA-TTTTTGACAA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGACAA
14115262 ACAACGATT
66 ACAACGATT
* * * *
14115271 GAAAATTCCTCACCGTGCCCCGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTGA-A
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGACA
14115335 AA-AA-GAATTT
65 AACAACG-A-TT
* * **
14115345 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCCCTATAAGTTGAT
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAT
14115400 CTTTGGAACA
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
72 1 0.01
73 50 0.46
74 51 0.47
75 7 0.06
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (74 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGACAA
ACAACGATT
Found at i:14124919 original size:29 final size:28
Alignment explanation
Indices: 14124855--14124911 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
14124845 TAAAGGAAAC
*
14124855 AAAT-TATACATAAATAAGTTTAAAAGA
1 AAATATATACATAAATAAATTTAAAAGA
*
14124882 AAATATATATATATAATAAATTTAAAAGA
1 AAATATATACATA-AATAAATTTAAAAGA
14124911 A
1 A
14124912 TTTATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 4 0.15
28 7 0.27
29 15 0.58
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (28 bp):
AAATATATACATAAATAAATTTAAAAGA
Found at i:14126042 original size:177 final size:177
Alignment explanation
Indices: 14125746--14126376 Score: 890
Period size: 177 Copynumber: 3.6 Consensus size: 177
14125736 GGCCTTGTTC
* *
14125746 GAGATAAGATTCGCCATCTTTGATCTGCTCCACAACTGCTTA-AGGAGATAAGATCTTCAATCTT
1 GAGATAAGATTTGCCATCTTCGATCTGCTCCACAACTGCTTAGA-GAGATAAGATCTTCAATCTT
*
14125810 CAGTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCT
65 CAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCT
* *
14125875 CAAAGAGATAAGGCTAATGGCTAAAATCTGCTCCATTGCCGATACATG
130 CAGAGAGATAAGGCTAATGGCTAAAATCTGCTCTATTGCCGATACATG
* *
14125923 GAGATAATATTTGCCATCTTCGATCTGTTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTC
1 GAGATAAGATTTGCCATCTTCGATCTGCTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTC
* *
14125988 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGATTACAATCGCCTACCTGCTCTCTTGCTACCTC
66 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCTC
* * *
14126053 AGAGAGACAAGGCTAGTGGCTAAAATCTGCTCTATTGCCTATACATG
131 AGAGAGATAAGGCTAATGGCTAAAATCTGCTCTATTGCCGATACATG
* * * *
14126100 GAGATAAGATTTGTCATCCTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATTTTCAATCTTC
1 GAGATAAGATTTGCCATCTTCGATCTGCTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTC
* * * * *
14126165 AGTCTGCTTCCTTGTTACCTCAGAAAGATAAGACTACAATCGCCAACATGCTCTCTTGCTACTTT
66 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCTC
* * * *
14126230 AGAGAGATAAGGCTGATGGTTAAAATATGCTCTATTTCCGATACATG
131 AGAGAGATAAGGCTAATGGCTAAAATCTGCTCTATTGCCGATACATG
* * * * * *
14126277 GAGATAAGATTTGCCCTTTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGT-AATTTT
1 GAGATAAGATTTGCCATCTTCGATCTGCTCCACAACTGCTTAGAGAGATAAGATCT-TCAATCTT
* * * * *
14126341 CAGTTTGC-TCCACTGCAACCTTAGGGAGATAAGACT
65 CAGTCTGCTTCC-TTGCTACCTCAGGAAGATAAGACT
14126377 TGTCATTTCA
Statistics
Matches: 404, Mismatches: 47, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
176 3 0.01
177 399 0.99
178 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (177 bp):
GAGATAAGATTTGCCATCTTCGATCTGCTCCACAACTGCTTAGAGAGATAAGATCTTCAATCTTC
AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCTC
AGAGAGATAAGGCTAATGGCTAAAATCTGCTCTATTGCCGATACATG
Found at i:14126727 original size:64 final size:64
Alignment explanation
Indices: 14126626--14126815 Score: 299
Period size: 64 Copynumber: 3.0 Consensus size: 64
14126616 ATGTATCTAC
* *
14126626 GCTTATGACAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGAT
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
* * ** *
14126690 GCTTATGTCAACTAATCAGGACACTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTGAT
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
* *
14126754 GTTTATGTCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
14126816 TTATGAATGA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 112 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
Found at i:14127958 original size:17 final size:17
Alignment explanation
Indices: 14127938--14127978 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14127928 CTGATTGATT
14127938 TTTTGTTTGAATTTTT-A
1 TTTT-TTTGAATTTTTAA
*
14127955 TTTTTTTTAATTTTTAA
1 TTTTTTTGAATTTTTAA
14127972 TTTTTTT
1 TTTTTTT
14127979 AAGGCCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (17 bp):
TTTTTTTGAATTTTTAA
Found at i:14127968 original size:16 final size:16
Alignment explanation
Indices: 14127937--14127980 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 16
14127927 TCTGATTGAT
14127937 TTTTTGTTTGAATTTTTA
1 TTTTT-TTT-AATTTTTA
14127955 TTTTTTTTAATTTTTA
1 TTTTTTTTAATTTTTA
*
14127971 ATTTTTTTAA
1 TTTTTTTTAA
14127981 GGCCTCAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 17 0.68
17 3 0.12
18 5 0.20
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (16 bp):
TTTTTTTTAATTTTTA
Found at i:14131110 original size:46 final size:46
Alignment explanation
Indices: 14131042--14131133 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
14131032 CACTATTCAC
* * *
14131042 TGATCAGGTAGCCGGAGTTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
14131088 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
14131134 AGCTACCACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:14131126 original size:31 final size:31
Alignment explanation
Indices: 14131088--14131146 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
14131078 AAGTAGCCGA
14131088 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
14131119 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
14131147 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:14131301 original size:50 final size:50
Alignment explanation
Indices: 14131126--14131302 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
14131116 CATTGATCAG
* * * *
14131126 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
14131177 GTAGCCGAAGCTATCACTTATCACCTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
14131227 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
14131277 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
14131303 GTTGCCATGG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 96 0.81
51 22 0.19
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:14136876 original size:29 final size:28
Alignment explanation
Indices: 14136830--14136890 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
14136820 GGAAACAAAT
*
14136830 TATACATAAATAAGTTTAAAAGAATATA
1 TATACATAAATAAATTTAAAAGAATATA
* *
14136858 TATATATATAATAAATTTAAAAGAATTTA
1 TATACATA-AATAAATTTAAAAGAATATA
14136887 TATA
1 TATA
14136891 AAATAACACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (28 bp):
TATACATAAATAAATTTAAAAGAATATA
Found at i:14138372 original size:19 final size:21
Alignment explanation
Indices: 14138342--14138380 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14138332 TATTGGATTT
14138342 ATTTTGTTATTTT-GTTTTGC
1 ATTTTGTTATTTTAGTTTTGC
14138362 ATTTT-TTATTTTAGTTTTG
1 ATTTTGTTATTTTAGTTTTG
14138381 GTATGGGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (21 bp):
ATTTTGTTATTTTAGTTTTGC
Found at i:14139249 original size:29 final size:29
Alignment explanation
Indices: 14139191--14139254 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
14139181 TAACATCATT
* * *
14139191 TTATATTTATATATTATGTACACAAATAA
1 TTATATTTATATAATATATACAAAAATAA
14139220 TTATATTTATATAATATATA-AAAAATTAA
1 TTATATTTATATAATATATACAAAAA-TAA
14139249 -TATATT
1 TTATATT
14139255 ATTTTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (29 bp):
TTATATTTATATAATATATACAAAAATAA
Found at i:14142131 original size:6 final size:6
Alignment explanation
Indices: 14142113--14142149 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
14142103 ATTTAAAATA
14142113 ATAATT ATAAATT ATAATT AT-A-T ATAATT ATAATT AT
1 ATAATT AT-AATT ATAATT ATAATT ATAATT ATAATT AT
14142150 CACAACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 3 0.11
5 2 0.07
6 17 0.61
7 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
ATAATT
Found at i:14142141 original size:16 final size:15
Alignment explanation
Indices: 14142118--14142149 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14142108 AAATAATAAT
14142118 TATAAATTATAATTA
1 TATAAATTATAATTA
14142133 TATATAATTATAATTA
1 TATA-AATTATAATTA
14142149 T
1 T
14142150 CACAACTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:14147101 original size:19 final size:20
Alignment explanation
Indices: 14147066--14147104 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14147056 GTTTTGTATC
*
14147066 CATTTCATTCATCTGCATTA
1 CATTTCATTCATATGCATTA
14147086 CATTTCA-TCATATGCATTA
1 CATTTCATTCATATGCATTA
14147105 AGTTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (20 bp):
CATTTCATTCATATGCATTA
Found at i:14147410 original size:64 final size:64
Alignment explanation
Indices: 14147309--14147498 Score: 299
Period size: 64 Copynumber: 3.0 Consensus size: 64
14147299 ATGTATCTAC
* *
14147309 GCTTATGACAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGAT
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
* * ** *
14147373 GCTTATGTCAACTAATCAGGACACTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTGAT
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
* *
14147437 GTTTATGTCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
14147499 TTATGAATGA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 112 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
GCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGAT
Found at i:14148641 original size:17 final size:17
Alignment explanation
Indices: 14148621--14148661 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14148611 CTGATTGATT
14148621 TTTTGTTTGAATTTTT-A
1 TTTT-TTTGAATTTTTAA
*
14148638 TTTTTTTTAATTTTTAA
1 TTTTTTTGAATTTTTAA
14148655 TTTTTTT
1 TTTTTTT
14148662 AAGGCCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (17 bp):
TTTTTTTGAATTTTTAA
Found at i:14148651 original size:16 final size:16
Alignment explanation
Indices: 14148620--14148663 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 16
14148610 TCTGATTGAT
14148620 TTTTTGTTTGAATTTTTA
1 TTTTT-TTT-AATTTTTA
14148638 TTTTTTTTAATTTTTA
1 TTTTTTTTAATTTTTA
*
14148654 ATTTTTTTAA
1 TTTTTTTTAA
14148664 GGCCTCAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 17 0.68
17 3 0.12
18 5 0.20
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (16 bp):
TTTTTTTTAATTTTTA
Found at i:14151790 original size:46 final size:46
Alignment explanation
Indices: 14151722--14151813 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
14151712 CACTATTCAC
* * *
14151722 TGATCAGGTAGCCGGAGTTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
14151768 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
14151814 AGCTACCACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:14151806 original size:31 final size:31
Alignment explanation
Indices: 14151768--14151826 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
14151758 AAGTAGCCGA
14151768 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
14151799 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
14151827 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:14151900 original size:50 final size:50
Alignment explanation
Indices: 14151806--14152082 Score: 464
Period size: 50 Copynumber: 5.5 Consensus size: 50
14151796 CATTGATCAG
* * * *
14151806 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
14151857 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
14151907 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
14151957 GTAGTCGAAGCTATCACTTATCACCTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
14152007 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
14152057 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
14152083 GTTGCCATGG
Statistics
Matches: 214, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
50 192 0.90
51 22 0.10
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:14157657 original size:29 final size:28
Alignment explanation
Indices: 14157611--14157671 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
14157601 GGAAACAAAT
*
14157611 TATACATAAATAAGTTTAAAAGAATATA
1 TATACATAAATAAATTTAAAAGAATATA
* *
14157639 TATATATATAATAAATTTAAAAGAATTTA
1 TATACATA-AATAAATTTAAAAGAATATA
14157668 TATA
1 TATA
14157672 AAATAACACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (28 bp):
TATACATAAATAAATTTAAAAGAATATA
Found at i:14159188 original size:19 final size:21
Alignment explanation
Indices: 14159158--14159196 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14159148 AATTTATTTT
14159158 ATTTTGTTATTTT-GTTTTGC
1 ATTTTGTTATTTTAGTTTTGC
14159178 ATTTT-TTATTTTAGTTTTG
1 ATTTTGTTATTTTAGTTTTG
14159197 GTATGGGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (21 bp):
ATTTTGTTATTTTAGTTTTGC
Found at i:14160065 original size:29 final size:29
Alignment explanation
Indices: 14160007--14160070 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
14159997 TAACATCATT
* * *
14160007 TTATATTTATATATTATGTACACAAATAA
1 TTATATTTATATAATATATACAAAAATAA
14160036 TTATATTTATATAATATATA-AAAAATTAA
1 TTATATTTATATAATATATACAAAAA-TAA
14160065 -TATATT
1 TTATATT
14160071 ATTTTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (29 bp):
TTATATTTATATAATATATACAAAAATAA
Found at i:14162948 original size:6 final size:6
Alignment explanation
Indices: 14162930--14162966 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
14162920 ATTTAAAATA
14162930 ATAATT ATAAATT ATAATT AT-A-T ATAATT ATAATT AT
1 ATAATT AT-AATT ATAATT ATAATT ATAATT ATAATT AT
14162967 CACAACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 3 0.11
5 2 0.07
6 17 0.61
7 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
ATAATT
Found at i:14162958 original size:16 final size:15
Alignment explanation
Indices: 14162935--14162966 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14162925 AAATAATAAT
14162935 TATAAATTATAATTA
1 TATAAATTATAATTA
14162950 TATATAATTATAATTA
1 TATA-AATTATAATTA
14162966 T
1 T
14162967 CACAACTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:14170045 original size:19 final size:20
Alignment explanation
Indices: 14170010--14170048 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14170000 GTTTTGTATC
*
14170010 CATTTCATTCATCTGCATTA
1 CATTTCATTCATATGCATTA
14170030 CATTTCA-TCATATGCATTA
1 CATTTCATTCATATGCATTA
14170049 AGTTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (20 bp):
CATTTCATTCATATGCATTA
Found at i:14179608 original size:44 final size:43
Alignment explanation
Indices: 14179536--14179653 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 43
14179526 ATTAAGGCTA
* *
14179536 TGAATTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGC-AGAT
1 TGAAGTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAG-T
* *
14179579 TAGAACG-ACAAACCTTATCTCCCTAAAGTTTCAGTGTAGCAAGT
1 T-GAA-GTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAGT
*
14179623 TGAAGTTACAAATCTTATCTCCCTAAAGTTG
1 TGAAG-TACAAACCTTATCTCCCTAAAGTTG
14179654 TAATGCAGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
42 1 0.02
43 4 0.06
44 57 0.89
45 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
TGAAGTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAGT
Found at i:14179817 original size:44 final size:44
Alignment explanation
Indices: 14179750--14179888 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 44
14179740 TTAGAGTGGA
* *
14179750 GCAGTGGAGCAGATTGAAA-CTACAAGTCTCATCTCCCTGAAGTT
1 GCAGTGGAGTAGA-TGAAAGCTACAAATCTCATCTCCCTGAAGTT
* * *
14179794 GCAGTGGAGTAGATGAAAGCTACAAATCTTATCTCCCTAAAATT
1 GCAGTGGAGTAGATGAAAGCTACAAATCTCATCTCCCTGAAGTT
** * * * *
14179838 ATAGTGGAGTGGATCAAAGCAACAATTC-CTATAC-CCCTGAAGTT
1 GCAGTGGAGTAGATGAAAGCTACAAATCTC-AT-CTCCCTGAAGTT
*
14179882 GTAGTGG
1 GCAGTGG
14179889 GTTAGAACGA
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
43 5 0.06
44 71 0.92
45 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (44 bp):
GCAGTGGAGTAGATGAAAGCTACAAATCTCATCTCCCTGAAGTT
Found at i:14183115 original size:26 final size:26
Alignment explanation
Indices: 14183086--14183139 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14183076 ACTTATTGTT
*
14183086 TTTTTTTTTAATT-TTAATAGAACAAC
1 TTTTTTTTT-ATTCCTAATAGAACAAC
14183112 TTTTTTTTTATTCCTAATAGAACAAC
1 TTTTTTTTTATTCCTAATAGAACAAC
14183138 TT
1 TT
14183140 ATTGTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.54
Consensus pattern (26 bp):
TTTTTTTTTATTCCTAATAGAACAAC
Found at i:14184590 original size:15 final size:16
Alignment explanation
Indices: 14184570--14184600 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14184560 TCTCAAAAAG
14184570 ATATAAA-TTTCCAAA
1 ATATAAAGTTTCCAAA
14184585 ATATAAAGTTTCCAAA
1 ATATAAAGTTTCCAAA
14184601 TAATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (16 bp):
ATATAAAGTTTCCAAA
Found at i:14187511 original size:4 final size:4
Alignment explanation
Indices: 14187502--14187535 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
14187492 CATGAAAGTT
* *
14187502 TTTA TTTA TTTA TTTG TTTA TTTA TTTA GTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14187536 CATTGATTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:14187614 original size:3 final size:3
Alignment explanation
Indices: 14187606--14187646 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
14187596 GCACATTTTG
* * *
14187606 TTA TTA TTA TTA TTC TCA TTA TTA TTA TTG TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14187647 TATTTTTCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14190457 original size:35 final size:35
Alignment explanation
Indices: 14190417--14190488 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
14190407 CTATTAAATA
* * *
14190417 ATTTAATTTTTTGTTGACTCCGTTAAGAGAGAATG
1 ATTTAATTTTTTGCTAACTCCATTAAGAGAGAATG
*
14190452 ATTTAATTTTTTGCTAACTCCATTAAGAGATAATG
1 ATTTAATTTTTTGCTAACTCCATTAAGAGAGAATG
14190487 AT
1 AT
14190489 GTGGCATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (35 bp):
ATTTAATTTTTTGCTAACTCCATTAAGAGAGAATG
Found at i:14190847 original size:13 final size:13
Alignment explanation
Indices: 14190829--14190853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14190819 ATAAAAATAC
14190829 AAAAAAAAGCATG
1 AAAAAAAAGCATG
14190842 AAAAAAAAGCAT
1 AAAAAAAAGCAT
14190854 AAAGTAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAAAAAAGCATG
Found at i:14192946 original size:3 final size:3
Alignment explanation
Indices: 14192938--14192988 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
14192928 ATTAAATGGA
14192938 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14192986 TAT
1 TAT
14192989 GATGCTGCTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14200316 original size:16 final size:17
Alignment explanation
Indices: 14200284--14200317 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14200274 TCATGTTAAA
14200284 AAATTATAAACATTTAT
1 AAATTATAAACATTTAT
*
14200301 AAATTTTAAA-ATTTAT
1 AAATTATAAACATTTAT
14200317 A
1 A
14200318 TTGATTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTATAAACATTTAT
Found at i:14203062 original size:34 final size:34
Alignment explanation
Indices: 14203024--14203092 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
14203014 ATTTGGCCAC
14203024 TAAGCGCGCCTTATACTTGTCAACTTCTCTATTT
1 TAAGCGCGCCTTATACTTGTCAACTTCTCTATTT
14203058 TAAGCGCGCCTTATACTTGTCAACTTCTCTATTT
1 TAAGCGCGCCTTATACTTGTCAACTTCTCTATTT
14203092 T
1 T
14203093 CCTTCGACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42
Consensus pattern (34 bp):
TAAGCGCGCCTTATACTTGTCAACTTCTCTATTT
Found at i:14205817 original size:13 final size:13
Alignment explanation
Indices: 14205801--14205825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14205791 CGCACATGGG
14205801 CGTGTCACACGAC
1 CGTGTCACACGAC
14205814 CGTGTCACACGA
1 CGTGTCACACGA
14205826 GCATGTCCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (13 bp):
CGTGTCACACGAC
Found at i:14206204 original size:32 final size:32
Alignment explanation
Indices: 14206163--14206228 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
14206153 TTGTTATTAT
14206163 TTTCTGAATCGTATGATAAATATTTAAACTTG
1 TTTCTGAATCGTATGATAAATATTTAAACTTG
14206195 TTTCTGAATCGTATGATAAATATTTAAACTTG
1 TTTCTGAATCGTATGATAAATATTTAAACTTG
14206227 TT
1 TT
14206229 CTTAATTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.45
Consensus pattern (32 bp):
TTTCTGAATCGTATGATAAATATTTAAACTTG
Found at i:14206916 original size:32 final size:32
Alignment explanation
Indices: 14206875--14206940 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
14206865 TTGTTATTAT
14206875 TTTCTGAATCGTATGATAAATATTTAAACTTG
1 TTTCTGAATCGTATGATAAATATTTAAACTTG
14206907 TTTCTGAATCGTATGATAAATATTTAAACTTG
1 TTTCTGAATCGTATGATAAATATTTAAACTTG
14206939 TT
1 TT
14206941 CTTAATTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.45
Consensus pattern (32 bp):
TTTCTGAATCGTATGATAAATATTTAAACTTG
Found at i:14207434 original size:712 final size:712
Alignment explanation
Indices: 14206071--14207495 Score: 2850
Period size: 712 Copynumber: 2.0 Consensus size: 712
14206061 TTTTGTATTC
14206071 TATATTCTTTTGAGATGTTTTCTTATTTAGTTATGAACTAAAACCCTAAAATACCTAATGGGAAT
1 TATATTCTTTTGAGATGTTTTCTTATTTAGTTATGAACTAAAACCCTAAAATACCTAATGGGAAT
14206136 GAAACCTAAGACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAAACTTGTTTCTG
66 GAAACCTAAGACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAAACTTGTTTCTG
14206201 AATCGTATGATAAATATTTAAACTTGTTCTTAATTATGTGTTCTTAACTCTTGTTTTGATATCTC
131 AATCGTATGATAAATATTTAAACTTGTTCTTAATTATGTGTTCTTAACTCTTGTTTTGATATCTC
14206266 AGGATACTAATTCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGGAAAAGAGTACATTTA
196 AGGATACTAATTCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGGAAAAGAGTACATTTA
14206331 TCATAATTAAGCGGAGTTGATTGTGCGCCTAGAAATAGGGTGACAAGATTTTACCAGATTAGGGT
261 TCATAATTAAGCGGAGTTGATTGTGCGCCTAGAAATAGGGTGACAAGATTTTACCAGATTAGGGT
14206396 GAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGAGTGTTAATTAGAGAAAAGA
326 GAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGAGTGTTAATTAGAGAAAAGA
14206461 CTCGGTTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGATAATAACATAACCTAGG
391 CTCGGTTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGATAATAACATAACCTAGG
14206526 GATCTCTACGGAACAAGTTGAATGAATAAATTATCCGATTCGGAGCCAGAATAACAAGTAAAGTC
456 GATCTCTACGGAACAAGTTGAATGAATAAATTATCCGATTCGGAGCCAGAATAACAAGTAAAGTC
14206591 TAGGTGGATCTTTCCTTAGGTATTGTCTTAAGTCAATCGATTTTCCCTAAAGCAATTTCCCAGTT
521 TAGGTGGATCTTTCCTTAGGTATTGTCTTAAGTCAATCGATTTTCCCTAAAGCAATTTCCCAGTT
14206656 CTTTTCTCTATGTGTTCTTAGTTTAAATAATTAGTTAATTAAAACAAAAACCTCTTTATTATTAG
586 CTTTTCTCTATGTGTTCTTAGTTTAAATAATTAGTTAATTAAAACAAAAACCTCTTTATTATTAG
14206721 GCTAGATTATAAAAAGACAGTTATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGG
651 GCTAGATTATAAAAAGACAGTTATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGG
14206783 TATATTCTTTTGAGATGTTTTCTTATTTAGTTATGAACTAAAACCCTAAAATACCTAATGGGAAT
1 TATATTCTTTTGAGATGTTTTCTTATTTAGTTATGAACTAAAACCCTAAAATACCTAATGGGAAT
14206848 GAAACCTAAGACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAAACTTGTTTCTG
66 GAAACCTAAGACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAAACTTGTTTCTG
14206913 AATCGTATGATAAATATTTAAACTTGTTCTTAATTATGTGTTCTTAACTCTTGTTTTGATATCTC
131 AATCGTATGATAAATATTTAAACTTGTTCTTAATTATGTGTTCTTAACTCTTGTTTTGATATCTC
14206978 AGGATACTAATTCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGGAAAAGAGTACATTTA
196 AGGATACTAATTCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGGAAAAGAGTACATTTA
14207043 TCATAATTAAGCGGAGTTGATTGTGCGCCTAGAAATAGGGTGACAAGATTTTACCAGATTAGGGT
261 TCATAATTAAGCGGAGTTGATTGTGCGCCTAGAAATAGGGTGACAAGATTTTACCAGATTAGGGT
14207108 GAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGAGTGTTAATTAGAGAAAAGA
326 GAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGAGTGTTAATTAGAGAAAAGA
14207173 CTCGGTTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGATAATAACATAACCTAGG
391 CTCGGTTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGATAATAACATAACCTAGG
14207238 GATCTCTACGGAACAAGTTGAATGAATAAATTATCCGATTCGGAGCCAGAATAACAAGTAAAGTC
456 GATCTCTACGGAACAAGTTGAATGAATAAATTATCCGATTCGGAGCCAGAATAACAAGTAAAGTC
14207303 TAGGTGGATCTTTCCTTAGGTATTGTCTTAAGTCAATCGATTTTCCCTAAAGCAATTTCCCAGTT
521 TAGGTGGATCTTTCCTTAGGTATTGTCTTAAGTCAATCGATTTTCCCTAAAGCAATTTCCCAGTT
14207368 CTTTTCTCTATGTGTTCTTAGTTTAAATAATTAGTTAATTAAAACAAAAACCTCTTTATTATTAG
586 CTTTTCTCTATGTGTTCTTAGTTTAAATAATTAGTTAATTAAAACAAAAACCTCTTTATTATTAG
14207433 GCTAGATTATAAAAAGACAGTTATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGG
651 GCTAGATTATAAAAAGACAGTTATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGG
14207495 T
1 T
14207496 CTTGCTAAAA
Statistics
Matches: 713, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
712 713 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (712 bp):
TATATTCTTTTGAGATGTTTTCTTATTTAGTTATGAACTAAAACCCTAAAATACCTAATGGGAAT
GAAACCTAAGACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAAACTTGTTTCTG
AATCGTATGATAAATATTTAAACTTGTTCTTAATTATGTGTTCTTAACTCTTGTTTTGATATCTC
AGGATACTAATTCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGGAAAAGAGTACATTTA
TCATAATTAAGCGGAGTTGATTGTGCGCCTAGAAATAGGGTGACAAGATTTTACCAGATTAGGGT
GAAACCTAATAAGGGGATCCATAGATCGAGTTAATGCAACCCTAGAGTGTTAATTAGAGAAAAGA
CTCGGTTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGATAATAACATAACCTAGG
GATCTCTACGGAACAAGTTGAATGAATAAATTATCCGATTCGGAGCCAGAATAACAAGTAAAGTC
TAGGTGGATCTTTCCTTAGGTATTGTCTTAAGTCAATCGATTTTCCCTAAAGCAATTTCCCAGTT
CTTTTCTCTATGTGTTCTTAGTTTAAATAATTAGTTAATTAAAACAAAAACCTCTTTATTATTAG
GCTAGATTATAAAAAGACAGTTATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGG
Found at i:14208690 original size:62 final size:62
Alignment explanation
Indices: 14208584--14208805 Score: 255
Period size: 62 Copynumber: 3.6 Consensus size: 62
14208574 GTATAAACCC
* * * * * *
14208584 ACACGGGCATGTGCCCAGACTGTGTAACTCACTGTTCATGGTATAAAACCACATAGCCAGGA
1 ACACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATGGTATAAAACCACACAGCCAGGG
* * * * * * * *
14208646 ACATAGGCTTGTGCCCAAGCCATGCAACTTACTGTTCATGGTATAAAACTACACAGTCAGGG
1 ACACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATGGTATAAAACCACACAGCCAGGG
* * * * *
14208708 ACACGGGCGTGTGCCTAGGCCGTGTAACTCATTGTTCATAGTATAAAACCACACGGCCAGGG
1 ACACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATGGTATAAAACCACACAGCCAGGG
* *
14208770 ACACAGGCGTGTGCCCAGGCCGTGTGACTTACTGTT
1 ACACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTT
14208806 GATACTTAAA
Statistics
Matches: 129, Mismatches: 31, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
62 129 1.00
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.23
Consensus pattern (62 bp):
ACACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATGGTATAAAACCACACAGCCAGGG
Found at i:14208760 original size:124 final size:125
Alignment explanation
Indices: 14208583--14208849 Score: 322
Period size: 124 Copynumber: 2.1 Consensus size: 125
14208573 GGTATAAACC
* * * * *
14208583 CACACGGGCATGTGCCCAGACTGTGTAACTCACTGTTCATGGTATAAAACCACATAGCCAGGAAC
1 CACACGGGCGTGTGCCTAGACCGTGTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGAAC
* * **
14208648 ATAGGCTTGTGCCCAAGCCATGCAACTTACTGTTCATGGTATAAAA-CTACACAGTC-AGG
66 ACAGGCGTGTGCCCAAGCCATGCAACTTACTGTTCATACT-TAAAATCTACACAGTCAAGG
* * * * *
14208707 GACACGGGCGTGTGCCTAGGCCGTGTAACTCATTGTTCATAGTATAAAACCACACGGCCAGGGAC
1 CACACGGGCGTGTGCCTAGACCGTGTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGAAC
* * ** *
14208772 ACAGGCGTGTGCCCAGGCCGTGTGACTTACTGTTGATACTTAAAATCTACACAGTCAAGG
66 ACAGGCGTGTGCCCAAGCCATGCAACTTACTGTTCATACTTAAAATCTACACAGTCAAGG
* *
14208832 CACATGGGTGTGTGCCTA
1 CACACGGGCGTGTGCCTA
14208850 AGTCGTGTGG
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
123 5 0.04
124 96 0.81
125 18 0.15
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (125 bp):
CACACGGGCGTGTGCCTAGACCGTGTAACTCACTGTTCATAGTATAAAACCACACAGCCAGGAAC
ACAGGCGTGTGCCCAAGCCATGCAACTTACTGTTCATACTTAAAATCTACACAGTCAAGG
Found at i:14213151 original size:17 final size:17
Alignment explanation
Indices: 14213122--14213159 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
14213112 AAATAAGGAA
14213122 AACAATCCAATTTTATT
1 AACAATCCAATTTTATT
14213139 AACAA-CCAGATTTTATT
1 AACAATCCA-ATTTTATT
14213156 AACA
1 AACA
14213160 TAGGCATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (17 bp):
AACAATCCAATTTTATT
Found at i:14213665 original size:7 final size:7
Alignment explanation
Indices: 14213655--14213697 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
14213645 CCCAATACCC
14213655 AAAACAA
1 AAAACAA
14213662 AAAACAA
1 AAAACAA
14213669 AAAACAA
1 AAAACAA
14213676 AAAA-AA
1 AAAACAA
*
14213682 AAGA-AA
1 AAAACAA
*
14213688 AAAAGAA
1 AAAACAA
14213695 AAA
1 AAA
14213698 GAAACCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 10 0.30
7 23 0.70
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (7 bp):
AAAACAA
Found at i:14213697 original size:18 final size:18
Alignment explanation
Indices: 14213654--14213690 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
14213644 GCCCAATACC
14213654 CAAAACAAAAAACAAAAAA
1 CAAAA-AAAAAACAAAAAA
*
14213673 CAAAAAAAAAAGAAAAAA
1 CAAAAAAAAAACAAAAAA
14213691 AGAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (18 bp):
CAAAAAAAAAACAAAAAA
Found at i:14213698 original size:14 final size:13
Alignment explanation
Indices: 14213655--14213701 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
14213645 CCCAATACCC
* *
14213655 AAAACAAAAAACA
1 AAAAGAAAAAAAA
*
14213668 AAAA-ACAAAAAA
1 AAAAGAAAAAAAA
14213680 AAAAGAAAAAAAGA
1 AAAAGAAAAAAA-A
14213694 AAAAGAAA
1 AAAAGAAA
14213702 CCCTTAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 10 0.34
14 9 0.31
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:14213975 original size:26 final size:26
Alignment explanation
Indices: 14213931--14213993 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
14213921 TATTTTGGAG
14213931 AGAAGAGA--TTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTTGAGATTCA
14213955 AGAAGAGATTTTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTTGAGATTCA
* *
14213981 AGAGGGGATTTTT
1 AGAAGAGATTTTT
14213994 CTCTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 8 0.23
26 27 0.77
ACGTcount: A:0.30, C:0.03, G:0.24, T:0.43
Consensus pattern (26 bp):
AGAAGAGATTTTTTTTTTGAGATTCA
Found at i:14214478 original size:3 final size:3
Alignment explanation
Indices: 14214470--14214595 Score: 252
Period size: 3 Copynumber: 42.0 Consensus size: 3
14214460 TGCATTTTAA
14214470 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14214518 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14214566 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14214596 GTACATATAT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 123 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14214822 original size:16 final size:15
Alignment explanation
Indices: 14214791--14214833 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
14214781 CCTTCATTCC
*
14214791 ATTATTATTATTACT
1 ATTATTATTTTTACT
14214806 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
14214822 ATCATTATTTTT
1 ATTATTATTTTT
14214834 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:14214958 original size:16 final size:16
Alignment explanation
Indices: 14214937--14214968 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14214927 CTATTGTTAC
14214937 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
14214953 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
14214969 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:14215203 original size:22 final size:22
Alignment explanation
Indices: 14215173--14215233 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
14215163 TTATTATATC
*
14215173 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
14215195 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
14215217 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
14215234 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:14215207 original size:3 final size:3
Alignment explanation
Indices: 14214968--14215188 Score: 57
Period size: 3 Copynumber: 74.3 Consensus size: 3
14214958 TTCTCATCAC
* * * *
14214968 TAT TAT TAT AATT TAT CAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
14215014 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * *
14215059 TAT TAT TAT TAT TAT TAT TAT TAG CAC TACT T-T TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * ** * * * *
14215104 T-T AAT ATAT TAT TTT TAC TAT TAT CGT CA- TAT TGT TAC TAT TAC
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
14215148 TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
14215189 GTTGTATTTT
Statistics
Matches: 153, Mismatches: 47, Indels: 36
0.65 0.20 0.15
Matches are distributed among these distances:
2 16 0.10
3 121 0.79
4 16 0.10
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:14222181 original size:15 final size:15
Alignment explanation
Indices: 14222161--14222191 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14222151 TTTACTTTCC
14222161 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
14222176 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
14222191 A
1 A
14222192 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:14225953 original size:31 final size:30
Alignment explanation
Indices: 14225913--14225989 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
14225903 TTGTTTGATT
*
14225913 TATAACTAAAATT-TTAATATTCAAAAAATA
1 TATAACTAAAATTGATAA-ATTCAAAAAATA
*
14225943 TATAGACTAAAATTGATAAATTCAAATAATA
1 TATA-ACTAAAATTGATAAATTCAAAAAATA
* *
14225974 TAAATATTAAAATTGA
1 TATA-ACTAAAATTGA
14225990 CCAAAATTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
30 4 0.10
31 33 0.82
32 3 0.08
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (30 bp):
TATAACTAAAATTGATAAATTCAAAAAATA
Found at i:14227403 original size:13 final size:13
Alignment explanation
Indices: 14227387--14227420 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
14227377 TCTTTTCAAA
14227387 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
14227400 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
14227415 TTCTGT
1 TTCTGT
14227421 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:14227409 original size:86 final size:87
Alignment explanation
Indices: 14227218--14227409 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
14227208 GATTGAGGTA
* * * *
14227218 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
14227283 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
14227305 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
14227366 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
14227392 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
14227410 TTAATTTCTG
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:14227412 original size:15 final size:15
Alignment explanation
Indices: 14227392--14227420 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14227382 TCAAATTCTG
14227392 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
14227407 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
14227421 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:14227515 original size:13 final size:13
Alignment explanation
Indices: 14227499--14227532 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
14227489 TCTTTTCAAA
14227499 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
14227512 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
14227527 TTCTGT
1 TTCTGT
14227533 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:14227522 original size:112 final size:111
Alignment explanation
Indices: 14227325--14227579 Score: 501
Period size: 112 Copynumber: 2.3 Consensus size: 111
14227315 CTACTTTTTC
14227325 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATTC
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATTC
14227390 TGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTCAAAAAAAAAAA
66 TGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTC-AAAAAAAAAA
14227437 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATTC
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATTC
14227502 TGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTCAAAAAAAAAA
66 TGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTCAAAAAAAAAA
14227548 AAATCAACTCATATTGCAAGAGGTGAGTTGAG
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAG
14227580 CATTTTAATT
Statistics
Matches: 143, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
111 42 0.29
112 101 0.71
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (111 bp):
AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATTC
TGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTCAAAAAAAAAA
Found at i:14227524 original size:15 final size:15
Alignment explanation
Indices: 14227504--14227532 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14227494 TCAAATTCTG
14227504 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
14227519 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
14227533 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:14227627 original size:53 final size:54
Alignment explanation
Indices: 14227546--14227795 Score: 377
Period size: 53 Copynumber: 4.7 Consensus size: 54
14227536 TCAAAAAAAA
* * *
14227546 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
14227600 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
*
14227653 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* *
14227703 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTC
*
14227758 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
14227796 GGCTCACGTG
Statistics
Matches: 181, Mismatches: 8, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
50 47 0.26
52 4 0.02
53 49 0.27
54 35 0.19
55 42 0.23
56 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
Done.