Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 46 of 182
Found at i:14446088 original size:30 final size:30
Alignment explanation
Indices: 14446054--14446111 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14446044 GCGTCGGTGT
*
14446054 GTGTGTGTCTGCGTTTGTATGTATGTGTCC
1 GTGTGTATCTGCGTTTGTATGTATGTGTCC
* * *
14446084 GTGTGTATGTGCGTTTGTTTGTGTGTGT
1 GTGTGTATCTGCGTTTGTATGTATGTGT
14446112 GCAGTTTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.05, C:0.09, G:0.36, T:0.50
Consensus pattern (30 bp):
GTGTGTATCTGCGTTTGTATGTATGTGTCC
Found at i:14446105 original size:34 final size:34
Alignment explanation
Indices: 14446028--14446094 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
14446018 TATCCTTTGC
* * *
14446028 CTGCATTTGTATGTATGCGTCGGTGTGTGTGTGT
1 CTGCGTTTGTATGTATGCGTCCGTGTGTATGTGT
*
14446062 CTGCGTTTGTATGTATGTGTCCGTGTGTATGTG
1 CTGCGTTTGTATGTATGCGTCCGTGTGTATGTG
14446095 CGTTTGTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.09, C:0.12, G:0.34, T:0.45
Consensus pattern (34 bp):
CTGCGTTTGTATGTATGCGTCCGTGTGTATGTGT
Found at i:14451941 original size:13 final size:13
Alignment explanation
Indices: 14451923--14451949 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14451913 TGGTTCATGT
14451923 TTTTAAGTATCTG
1 TTTTAAGTATCTG
14451936 TTTTAAGTATCTG
1 TTTTAAGTATCTG
14451949 T
1 T
14451950 CTTACCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (13 bp):
TTTTAAGTATCTG
Found at i:14452146 original size:272 final size:272
Alignment explanation
Indices: 14451650--14452328 Score: 1232
Period size: 272 Copynumber: 2.5 Consensus size: 272
14451640 TTTTTTTTGG
* * *
14451650 TTTAAGTGATTCTGTTTTAAGTATATGTTTTACCTTCTGCAGCCATTTCATATCTTTCAAGCCTT
1 TTTAAGT-A-TCTGTTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTT
* *
14451715 CTCTCCCAAAGCAGGCCAAGGTAAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGCTGGTA
64 CCCTCCCAAAGCAGGCCAAGGTGAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGCTGGTA
14451780 AATGATTCTTGTTATGCTTTAAGTCTAGCATCACGTAAGCAGGGTTTGTGGTTCATGTTTTTAAG
129 AATGATTCTTGTTATGCTTTAAGTCTAGCATCACGTAAGCAGGGTTTGTGGTTCATGTTTTTAAG
14451845 TATCTGCTTTACCTTTGTTCTCCAGAGTAGTTGAATATTTGTTTCACAGCTACATATATAGGAAT
194 TATCTGCTTTACCTTTGTTCTCCAGAGTAGTTGAATATTTGTTTCACAGCTACATATATAGGAAT
14451910 TTGTGGTTCATGTT
259 TTGTGGTTCATGTT
14451924 TTTAAGTATCTGTTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTTCC
1 TTTAAGTATCTGTTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTTCC
*
14451989 CTCCCAAAGCAGGCCAAGGTGAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGTTGGTAAA
66 CTCCCAAAGCAGGCCAAGGTGAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGCTGGTAAA
* *
14452054 TTATTCTTGTTATGCTTTAAGTCTAGCATTACGTAAGCAGGGTTTGTGGTTCATGTTTTTAAGTA
131 TGATTCTTGTTATGCTTTAAGTCTAGCATCACGTAAGCAGGGTTTGTGGTTCATGTTTTTAAGTA
*
14452119 TCTGCTTTTCCTTTGTTCTCCAGAGTAGTTGAATATTTGTTTCACAGCTACATATATAGGAATTT
196 TCTGCTTTACCTTTGTTCTCCAGAGTAGTTGAATATTTGTTTCACAGCTACATATATAGGAATTT
14452184 GTGGTTCATGTT
261 GTGGTTCATGTT
*
14452196 TTTAAGTATCTATTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTTCC
1 TTTAAGTATCTGTTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTTCC
* *
14452261 CTCCCAAAGCAGGCCAAGGTGAGGATCATTGACTGGTTGTGAGAAGTGAAAGAAAAGCTGGTAAA
66 CTCCCAAAGCAGGCCAAGGTGAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGCTGGTAAA
14452326 TGA
131 TGA
14452329 AACTTGCATT
Statistics
Matches: 391, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
272 383 0.98
273 1 0.00
274 7 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (272 bp):
TTTAAGTATCTGTTTTAAGTATCTGTCTTACCTTCTGCTGCCATTTCATATCTTTCAAGCCTTCC
CTCCCAAAGCAGGCCAAGGTGAGGATCTTTGACTGGTTGTGAAAAGTGAAAGAAAAGCTGGTAAA
TGATTCTTGTTATGCTTTAAGTCTAGCATCACGTAAGCAGGGTTTGTGGTTCATGTTTTTAAGTA
TCTGCTTTACCTTTGTTCTCCAGAGTAGTTGAATATTTGTTTCACAGCTACATATATAGGAATTT
GTGGTTCATGTT
Found at i:14452213 original size:13 final size:13
Alignment explanation
Indices: 14452195--14452219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14452185 TGGTTCATGT
14452195 TTTTAAGTATCTA
1 TTTTAAGTATCTA
14452208 TTTTAAGTATCT
1 TTTTAAGTATCT
14452220 GTCTTACCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTAAGTATCTA
Found at i:14452878 original size:18 final size:18
Alignment explanation
Indices: 14452855--14452893 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
14452845 TTTACCAACT
14452855 TTATGGATAATAATTTAA
1 TTATGGATAATAATTTAA
14452873 TTATGGATAATAATTTAA
1 TTATGGATAATAATTTAA
14452891 TTA
1 TTA
14452894 AAGATATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (18 bp):
TTATGGATAATAATTTAA
Found at i:14452899 original size:18 final size:18
Alignment explanation
Indices: 14452860--14452899 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14452850 CAACTTTATG
**
14452860 GATAATAATTTAATTATG
1 GATAATAATTTAATTAAA
14452878 GATAATAATTTAATTAAA
1 GATAATAATTTAATTAAA
14452896 GATA
1 GATA
14452900 TAACATAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
GATAATAATTTAATTAAA
Found at i:14453283 original size:14 final size:15
Alignment explanation
Indices: 14453261--14453337 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14453251 CAATCAAACA
14453261 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
14453275 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
14453290 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
14453310 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
14453324 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
14453338 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:14453302 original size:20 final size:20
Alignment explanation
Indices: 14453277--14453316 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14453267 AATATTTTCC
*
14453277 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
14453297 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
14453317 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:14453322 original size:34 final size:35
Alignment explanation
Indices: 14453265--14453331 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14453255 CAAACACCAG
*
14453265 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
14453300 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
14453332 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14453338 original size:14 final size:14
Alignment explanation
Indices: 14453300--14453339 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14453290 ACAGAAAAGT
*
14453300 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
14453314 AAATCATTTTACGG
1 AAAACATTTTACAG
14453328 AAAACATTTTAC
1 AAAACATTTTAC
14453340 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:14458527 original size:20 final size:19
Alignment explanation
Indices: 14458502--14458551 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
14458492 CTCTATTTGA
14458502 TTTTTAAAAGTA-TTTTCTAT
1 TTTTTAAAA-TAGTTTT-TAT
14458522 TTTTTAAAATAGTTTTTAT
1 TTTTTAAAATAGTTTTTAT
14458541 TTTTTAAAATA
1 TTTTTAAAATA
14458552 ATTGAAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTTAAAATAGTTTTTAT
Found at i:14462808 original size:15 final size:15
Alignment explanation
Indices: 14462788--14462816 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14462778 AAACAAGCAA
14462788 TAAATGAGAATTCTT
1 TAAATGAGAATTCTT
14462803 TAAATGAGAATTCT
1 TAAATGAGAATTCT
14462817 CAATTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
TAAATGAGAATTCTT
Found at i:14466462 original size:42 final size:42
Alignment explanation
Indices: 14466330--14466556 Score: 241
Period size: 42 Copynumber: 5.5 Consensus size: 42
14466320 TTTAAACAGA
* * * *
14466330 TTCACTGGCACTT-AGCCTGCTAGACTTAAAGCCTG--ATTCAG
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGAAATT-AT
* * * * *
14466371 TACACCGGCACTT-AGCCTGCCAGACATATAGTCTGAAA-TGT
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
*
14466412 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCT-AATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAA-ATTAT
*
14466454 TTCACCGGCATTAAGCCTGCTAGATGTAAAGTCTGAAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
* *
14466496 TTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
* *
14466538 TTCACCGGCAATAAACCTG
1 TTCACCGGCATTAAGCCTG
14466557 ATAGGCACTG
Statistics
Matches: 160, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
40 4 0.03
41 57 0.36
42 96 0.60
43 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (42 bp):
TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
Found at i:14468348 original size:12 final size:13
Alignment explanation
Indices: 14468329--14468354 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14468319 TCAAACGATC
14468329 AAATTTTTATACA
1 AAATTTTTATACA
14468342 AAATTTTTATACA
1 AAATTTTTATACA
14468355 TAGTAATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTTTATACA
Found at i:14473034 original size:29 final size:30
Alignment explanation
Indices: 14472975--14473032 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14472965 TCTGGGCCTT
*
14472975 GGGGCAAAAATGTAATTATGCAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
14473005 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
14473033 AGATTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:14473450 original size:50 final size:50
Alignment explanation
Indices: 14473375--14473562 Score: 286
Period size: 50 Copynumber: 3.7 Consensus size: 50
14473365 GGTAAAGGGA
14473375 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
14473425 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * **
14473475 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGG
*
14473526 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
14473563 TGTTATGATC
Statistics
Matches: 123, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 89 0.72
51 34 0.28
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:14477606 original size:16 final size:16
Alignment explanation
Indices: 14477585--14477616 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14477575 GATTTTACAA
14477585 AAAGCACATAGCAGTT
1 AAAGCACATAGCAGTT
14477601 AAAGCACATAGCAGTT
1 AAAGCACATAGCAGTT
14477617 CTTTGTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (16 bp):
AAAGCACATAGCAGTT
Found at i:14478886 original size:29 final size:30
Alignment explanation
Indices: 14478833--14478892 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
14478823 TCTGGGCCTT
*
14478833 GGGGCAAAAATGTAATTATGCAAAAATTTA
1 GGGGCAAAAATGTAATTATGCAAAAAGTTA
*
14478863 GGGGC-AAAATCGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAAT-GTAATTATGCAAAAAGTTA
14478892 G
1 G
14478893 ATTCGAGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGCAAAAAGTTA
Found at i:14479306 original size:50 final size:50
Alignment explanation
Indices: 14479231--14479418 Score: 268
Period size: 50 Copynumber: 3.7 Consensus size: 50
14479221 GGTAAAGGGA
14479231 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * *
14479281 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGTACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
14479331 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGG
*
14479382 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
14479419 TGTTATGATC
Statistics
Matches: 119, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 86 0.72
51 33 0.28
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:14479816 original size:23 final size:22
Alignment explanation
Indices: 14479753--14479803 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
14479743 AAAATAACGG
14479753 TTTAACAAAATGAATTTTATAT
1 TTTAACAAAATGAATTTTATAT
14479775 TTTAACAAAATGAATTTTATAT
1 TTTAACAAAATGAATTTTATAT
14479797 TTTAACA
1 TTTAACA
14479804 TATGTGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (22 bp):
TTTAACAAAATGAATTTTATAT
Found at i:14480648 original size:13 final size:13
Alignment explanation
Indices: 14480630--14480654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14480620 AATACCAAAT
14480630 ACAGATAGATTAC
1 ACAGATAGATTAC
14480643 ACAGATAGATTA
1 ACAGATAGATTA
14480655 TACGTCAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ACAGATAGATTAC
Found at i:14487720 original size:16 final size:18
Alignment explanation
Indices: 14487688--14487721 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14487678 TGTTAATAGA
14487688 ATAAATTTAGTGTTAATT
1 ATAAATTTAGTGTTAATT
14487706 ATAAATTT-G-GTTAATT
1 ATAAATTTAGTGTTAATT
14487722 TTACATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (18 bp):
ATAAATTTAGTGTTAATT
Found at i:14504973 original size:35 final size:34
Alignment explanation
Indices: 14504934--14505030 Score: 131
Period size: 35 Copynumber: 2.8 Consensus size: 34
14504924 ACTTGCCTCT
14504934 TCCCACTCTCCCATGCTGTCTACCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTACCACCAGCACCA
*
14504968 CTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 -TCCCACTCTCCCATGCTGTCTACCACCAGCACCA
* * * * *
14505003 TCACACACCCCCATACCGTCTACCACCA
1 TCCCACTCTCCCATGCTGTCTACCACCA
14505031 CCATGCCTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 22 0.40
35 33 0.60
ACGTcount: A:0.22, C:0.52, G:0.08, T:0.19
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCTACCACCAGCACCA
Found at i:14505029 original size:34 final size:35
Alignment explanation
Indices: 14504951--14505030 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
14504941 CTCCCATGCT
* * * * *
14504951 GTCTACCACCAGCACCACTCCCACTCTCCCATGCT
1 GTCTACCACCAGCACCACTCACACACCCCCATACC
*
14504986 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTACCACCAGCACCACTCACACACCCCCATACC
14505020 GTCTACCACCA
1 GTCTACCACCA
14505031 CCATGCCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 22 0.58
35 16 0.42
ACGTcount: A:0.24, C:0.51, G:0.09, T:0.16
Consensus pattern (35 bp):
GTCTACCACCAGCACCACTCACACACCCCCATACC
Found at i:14505924 original size:125 final size:124
Alignment explanation
Indices: 14505687--14505935 Score: 462
Period size: 125 Copynumber: 2.0 Consensus size: 124
14505677 TTTATTTTTG
14505687 TGTGTTTTTACATCTAGTTTGATTTCTTTTTATTTCTTTCTACTTACGAAAATAAAAAAAAAGAA
1 TGTGTTTTTACATCTAGTTTGATTTCTTTTTATTTCTTTCTACTTACGAAAATAAAAAAAAAGAA
14505752 ATAAGGAGAGGAGAAACTCACCGGAGTTGGCCGTGACCGTGCCGCCGGGGTTTCTCTTC
66 ATAAGGAGAGGAGAAACTCACCGGAGTTGGCCGTGACCGTGCCGCCGGGGTTTCTCTTC
* *
14505811 TGTGTTTTTACATCTAGTTTGATTTCTTTTTATTTCTTTCTACTTACGAAAATAATTACAAAAGA
1 TGTGTTTTTACATCTAGTTTGATTTCTTTTTATTTCTTTCTACTTACGAAAATAA-AAAAAAAGA
*
14505876 AATAAGGAGAGGAGAAACTCACCGGAGTTGGCCGTGACCGTGCCGCCGGGGTTTTTCTTC
65 AATAAGGAGAGGAGAAACTCACCGGAGTTGGCCGTGACCGTGCCGCCGGGGTTTCTCTTC
14505936 CATCGTCGGC
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
124 55 0.45
125 66 0.55
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (124 bp):
TGTGTTTTTACATCTAGTTTGATTTCTTTTTATTTCTTTCTACTTACGAAAATAAAAAAAAAGAA
ATAAGGAGAGGAGAAACTCACCGGAGTTGGCCGTGACCGTGCCGCCGGGGTTTCTCTTC
Found at i:14508077 original size:62 final size:62
Alignment explanation
Indices: 14508011--14508194 Score: 305
Period size: 62 Copynumber: 3.0 Consensus size: 62
14508001 CACGTATCTC
*
14508011 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
14508073 TTCATGCATTAACATAACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
14508135 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
14508195 TCGAGTTTAG
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:14509457 original size:11 final size:11
Alignment explanation
Indices: 14509434--14509483 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
14509424 GGCCAAAAAA
14509434 AAAAGAACAAAT
1 AAAA-AACAAAT
*
14509446 AAAAACCAAAT
1 AAAAAACAAAT
14509457 AAAAAACAAA-
1 AAAAAACAAAT
14509467 AGCAAAAACAAA-
1 A--AAAAACAAAT
14509479 AAAAA
1 AAAAA
14509484 CTCTACCAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 5 0.15
11 15 0.44
12 14 0.41
ACGTcount: A:0.80, C:0.12, G:0.04, T:0.04
Consensus pattern (11 bp):
AAAAAACAAAT
Found at i:14510434 original size:104 final size:105
Alignment explanation
Indices: 14510270--14510461 Score: 278
Period size: 104 Copynumber: 1.8 Consensus size: 105
14510260 TTTGTATTCT
* *
14510270 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAGCAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTG---AATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
*
14510335 ATCCGTTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
63 ATCCATTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
** * *
14510378 AGCAAAATTTGCTATCTTG-ATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTTGTC
1 AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
*
14510442 CATTTTGATAATCTTTTTCA
66 CATTGTGATAATCTTTTTCA
14510462 AGCATTTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
104 57 0.75
108 19 0.25
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.47
Consensus pattern (105 bp):
AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
CATTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
Found at i:14511007 original size:45 final size:44
Alignment explanation
Indices: 14510956--14511102 Score: 118
Period size: 45 Copynumber: 3.2 Consensus size: 44
14510946 AATGGAGTAC
14510956 ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAG
1 ATTGAAGCCGATAACTCTATCTCCCTG-ATTTGGCAGTGGAATAG
* * * * * * * *
14511001 ATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA-CT-ACAGTGGAGTAC
1 ATTGAAG--C--CGAT---A-ACTCTATCTCCCTGATTTGGCAGTGGAATAG
14511051 ATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAG
1 ATTGAAGCCGATAACTCTATCTCCCTG-ATTTGGCAGTGGAATAG
14511096 ATTGAAG
1 ATTGAAG
14511103 ATCAAAGATG
Statistics
Matches: 75, Mismatches: 16, Indels: 22
0.66 0.14 0.19
Matches are distributed among these distances:
42 11 0.15
43 2 0.03
44 1 0.01
45 23 0.31
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 16 0.21
51 1 0.01
52 2 0.03
53 11 0.15
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
ATTGAAGCCGATAACTCTATCTCCCTGATTTGGCAGTGGAATAG
Found at i:14511047 original size:95 final size:95
Alignment explanation
Indices: 14510911--14511136 Score: 425
Period size: 95 Copynumber: 2.4 Consensus size: 95
14510901 GCAGCGAAGC
*
14510911 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAATGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
*
14510976 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
14511006 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
14511071 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
14511101 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACA
14511137 NNNNNNNNNN
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 128 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:14511055 original size:50 final size:50
Alignment explanation
Indices: 14510990--14511136 Score: 139
Period size: 50 Copynumber: 3.0 Consensus size: 50
14510980 CTGTATTTGG
14510990 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
* * * * * * * *
14511040 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGCATTTGG
1 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-A
14511085 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
14511135 CA
1 CA
14511137 NNNNNNNNNN
Statistics
Matches: 70, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
42 11 0.16
43 2 0.03
44 1 0.01
45 16 0.23
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 18 0.26
51 1 0.01
52 2 0.03
53 11 0.16
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
Found at i:14526872 original size:18 final size:18
Alignment explanation
Indices: 14526851--14526885 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14526841 ATAGATTTCC
*
14526851 TTTTATTTTTTGATTTTA
1 TTTTATTTTTTCATTTTA
*
14526869 TTTTCTTTTTTCATTTT
1 TTTTATTTTTTCATTTT
14526886 TCGGCTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTCATTTTA
Found at i:14545153 original size:20 final size:20
Alignment explanation
Indices: 14545121--14545183 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
14545111 TAATTAGTTT
14545121 ATTTATA-AATTTTATTCTA
1 ATTTATATAATTTTATTCTA
*
14545140 ATTTATTTAATTTTTATT-TA
1 ATTTATATAA-TTTTATTCTA
14545160 ATTTATATAATCTCTT-TTCTA
1 ATTTATATAAT-T-TTATTCTA
14545181 ATT
1 ATT
14545184 AAAGGTGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 7 0.19
20 16 0.43
21 14 0.38
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTATATAATTTTATTCTA
Found at i:14551405 original size:91 final size:91
Alignment explanation
Indices: 14551297--14551842 Score: 1083
Period size: 91 Copynumber: 6.0 Consensus size: 91
14551287 TTAGGCTAAA
14551297 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
14551362 AATTTGGATCGGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551388 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
14551453 AATTTGGATCGGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551479 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
14551544 AATTTGGATCGGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551570 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
14551635 AATTTGGATCGGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551661 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
14551726 AATTTGGATCGGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551752 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
1 TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
*
14551817 AATTTGGATCAGGGAAAGACAAAGTG
66 AATTTGGATCGGGGAAAGACAAAGTG
14551843 GTCGAATAGC
Statistics
Matches: 454, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 454 1.00
ACGTcount: A:0.41, C:0.04, G:0.21, T:0.34
Consensus pattern (91 bp):
TTTGATGGAATAATGTTTAAATAAGTTTAATTTGAATTTATTTAGATCAAGAATTAAAGAAGTCA
AATTTGGATCGGGGAAAGACAAAGTG
Found at i:14551973 original size:47 final size:47
Alignment explanation
Indices: 14551920--14552024 Score: 129
Period size: 47 Copynumber: 2.2 Consensus size: 47
14551910 ACTACCAATG
** * *
14551920 TATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCTGAA
1 TATATATATATTTGTTATACAGAGAAATGAATTAAACTATAGCCGAA
* * * * *
14551967 TGTATATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAA
1 TATATATATATTTGTTATACAGAGAAATGAATTAAACTATAGCCGAA
14552014 TATATATATAT
1 TATATATATAT
14552025 ATATATATAT
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.39
Consensus pattern (47 bp):
TATATATATATTTGTTATACAGAGAAATGAATTAAACTATAGCCGAA
Found at i:14552339 original size:126 final size:126
Alignment explanation
Indices: 14552114--14552365 Score: 495
Period size: 126 Copynumber: 2.0 Consensus size: 126
14552104 TTTATATTCC
14552114 GAGAACGATTTATTTAGATATGAATTAGGTGAAGAACAATTTTGTAAGTTCGGGCTTTATGCCTA
1 GAGAACGATTTATTTAGATATGAATTAGGTGAAGAACAATTTTGTAAGTTCGGGCTTTATGCCTA
14552179 GCAAGCTCTGTGTCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTGCCGATGAA
66 GCAAGCTCTGTGTCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTGCCGATGAA
14552240 GAGAACGATTTATTTAGATATGAATTAGGTGAAGAACAATTTTGTAAGTTCGGGCTTTATGCCTA
1 GAGAACGATTTATTTAGATATGAATTAGGTGAAGAACAATTTTGTAAGTTCGGGCTTTATGCCTA
*
14552305 GCAAGCTCTGTGTCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTGCCGGTGAA
66 GCAAGCTCTGTGTCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTGCCGATGAA
14552366 ATGTATCAGA
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (126 bp):
GAGAACGATTTATTTAGATATGAATTAGGTGAAGAACAATTTTGTAAGTTCGGGCTTTATGCCTA
GCAAGCTCTGTGTCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTGCCGATGAA
Found at i:14552348 original size:41 final size:41
Alignment explanation
Indices: 14552291--14552371 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
14552281 TTGTAAGTTC
*
14552291 GGGCTTTATGCCTAGCAAGCTCTGTGTCGGTGAAATGTATT
1 GGGCTTTATGCCTAGCAAGCTCTGTGCCGGTGAAATGTATT
*
14552332 GGGCTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTAT
1 GGGCTTTATGCCTAGCAAGCTCTGTGCCGGTGAAATGTAT
14552372 CAGACTTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.32
Consensus pattern (41 bp):
GGGCTTTATGCCTAGCAAGCTCTGTGCCGGTGAAATGTATT
Found at i:14552388 original size:41 final size:41
Alignment explanation
Indices: 14552294--14552404 Score: 141
Period size: 41 Copynumber: 2.7 Consensus size: 41
14552284 TAAGTTCGGG
* * ** *
14552294 CTTTATGCCTAGCAAGCTCTGTGTCGGTGAAATGTATTGGG
1 CTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCAGA
14552335 CTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCAGA
1 CTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCAGA
* * * *
14552376 CTTTGTGTCTAGCAGGCTTTATGCCGGTG
1 CTTTATGCCTAGCAGGCTCTGTGCCGGTG
14552405 TTTTATATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (41 bp):
CTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCAGA
Found at i:14554847 original size:28 final size:28
Alignment explanation
Indices: 14554807--14554873 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
14554797 TATACGACAT
*
14554807 GCAGTAATAGTCTGGGCCTGAGCCTTAA
1 GCAGTAACAGTCTGGGCCTGAGCCTTAA
*
14554835 GCAGTAACAGTCTGGGCCTTAGCCTTAA
1 GCAGTAACAGTCTGGGCCTGAGCCTTAA
14554863 GCAGTAACAGT
1 GCAGTAACAGT
14554874 GTAAAATGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (28 bp):
GCAGTAACAGTCTGGGCCTGAGCCTTAA
Found at i:14555280 original size:27 final size:27
Alignment explanation
Indices: 14555258--14555374 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
14555248 ATGGGTATAA
*
14555258 CAGTCATTTTA-CCTTATGGGGGTATTT
1 CAGTCATTTTACCCTT-CGGGGGTATTT
14555285 C-GATCATTTTACCCTTCGGGGGTATTT
1 CAG-TCATTTTACCCTTCGGGGGTATTT
* **
14555312 CAGTCATTTTATCCTTCGAAGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* * *
14555339 CGGTTATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
*
14555366 CTGTCATTT
1 CAGTCATTT
14555375 GCCTATGAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 71 0.92
28 5 0.06
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGGGGGTATTT
Found at i:14559685 original size:40 final size:39
Alignment explanation
Indices: 14559617--14559751 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 39
14559607 ACCAGTTTTT
*
14559617 CACCCAGTGCCTCATCGGGTAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGGCTAATTCGAAGTAATAA-TTGA
* * ** *
14559657 CACCTAGTGTCTCATCGGCTAAACCGAAGT-A-AATTGG
1 CACCCAGTGCCTCATCGGCTAATTCGAAGTAATAATTGA
* ***
14559694 CACCTAGTGCCTCATCAAATTAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATC-GGCTAATTCGAAGTAAT-AATTGA
* *
14559735 CACCCAATGTCTCATCG
1 CACCCAGTGCCTCATCG
14559752 ACTCAAAGTC
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
37 18 0.24
38 11 0.15
39 2 0.03
40 25 0.34
41 18 0.24
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGCTAATTCGAAGTAATAATTGA
Found at i:14559749 original size:41 final size:40
Alignment explanation
Indices: 14559636--14559750 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 40
14559626 CCTCATCGGG
* **
14559636 TAATTCGAAGTAATAATTTGACACCTAGTGTCTCATCGGC
1 TAATTCGAAGTAATAAATTGACACCTAGTGTCTCATCAAC
** * * *
14559676 TAAACCGAAG---TAAATTGGCACCTAGTGCCTCATCAAAT
1 TAATTCGAAGTAATAAATTGACACCTAGTGTCTCATC-AAC
* *
14559714 TAATTCGAAGTAATAAATTGACACCCAATGTCTCATC
1 TAATTCGAAGTAATAAATTGACACCTAGTGTCTCATC
14559751 GACTCAAAGT
Statistics
Matches: 57, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
37 21 0.37
38 8 0.14
40 8 0.14
41 20 0.35
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (40 bp):
TAATTCGAAGTAATAAATTGACACCTAGTGTCTCATCAAC
Found at i:14559947 original size:24 final size:24
Alignment explanation
Indices: 14559910--14559956 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14559900 TATATATACC
14559910 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
14559934 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
14559957 CTATTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:14560793 original size:19 final size:20
Alignment explanation
Indices: 14560769--14560813 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14560759 ATTTACTTAA
*
14560769 TTATTAAGCAATACATAT-T
1 TTATTAAGAAATACATATGT
**
14560788 TTATTATTAAATACATATGT
1 TTATTAAGAAATACATATGT
14560808 TTATTA
1 TTATTA
14560814 TTATTACACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (20 bp):
TTATTAAGAAATACATATGT
Found at i:14560821 original size:19 final size:19
Alignment explanation
Indices: 14560778--14560816 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
14560768 ATTATTAAGC
14560778 AATACATATTTTATTATTA
1 AATACATATTTTATTATTA
14560797 AATACATATGTTTATTATTA
1 AATACATAT-TTTATTATTA
14560817 TTACACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (19 bp):
AATACATATTTTATTATTA
Found at i:14561658 original size:21 final size:23
Alignment explanation
Indices: 14561634--14561687 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 23
14561624 AAAATATAAT
14561634 AGCAAAATAACAA-AAAAACA-C
1 AGCAAAATAACAATAAAAACAGC
* *
14561655 AGCAACAA-AACAATAGAAATAGC
1 AGCAA-AATAACAATAAAAACAGC
14561678 AGCAAAATAA
1 AGCAAAATAA
14561688 TGGAAACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 10 0.37
22 9 0.33
23 8 0.30
ACGTcount: A:0.67, C:0.17, G:0.09, T:0.07
Consensus pattern (23 bp):
AGCAAAATAACAATAAAAACAGC
Found at i:14568524 original size:20 final size:20
Alignment explanation
Indices: 14568499--14568536 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14568489 TTCTTTATGC
14568499 TTGCACATCTGTGCCTCTGT
1 TTGCACATCTGTGCCTCTGT
14568519 TTGCACATCTGTGCCTCT
1 TTGCACATCTGTGCCTCT
14568537 ATTTTGCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.11, C:0.32, G:0.18, T:0.39
Consensus pattern (20 bp):
TTGCACATCTGTGCCTCTGT
Found at i:14569178 original size:3 final size:3
Alignment explanation
Indices: 14569172--14569198 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14569162 GTAGTAGTAG
14569172 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
14569199 GGTTAGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14570292 original size:18 final size:18
Alignment explanation
Indices: 14570271--14570315 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14570261 CATTCGTTTC
14570271 CAAAACATTATTC-ATTT
1 CAAAACATTATTCAATTT
* *
14570288 ACAAATCGTTATTCAATTT
1 -CAAAACATTATTCAATTT
14570307 CAAAACATT
1 CAAAACATT
14570316 TTTCTTATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (18 bp):
CAAAACATTATTCAATTT
Found at i:14570741 original size:33 final size:34
Alignment explanation
Indices: 14570677--14570741 Score: 82
Period size: 33 Copynumber: 1.9 Consensus size: 34
14570667 GTAAACAGAT
*
14570677 AATCACAGTTTGGGCTTAAGCCCTTTCCAATATC
1 AATCACAGTTTGGGCTTAAGCCCTCTCCAATATC
14570711 AATC-CAGTTTGGGCCTT-AGCCCATCT-CAATA
1 AATCACAGTTTGGG-CTTAAGCCC-TCTCCAATA
14570742 CAAAAACAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (34 bp):
AATCACAGTTTGGGCTTAAGCCCTCTCCAATATC
Found at i:14592612 original size:18 final size:16
Alignment explanation
Indices: 14592572--14592615 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 16
14592562 CTTCAATTAT
14592572 TTAATTTCATATTAAA
1 TTAATTTCATATTAAA
14592588 TAATAATTTACATATATAAA
1 T--TAATTT-CATAT-TAAA
14592608 TTAATTTC
1 TTAATTTC
14592616 TGAGTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 1 0.04
17 1 0.04
18 12 0.50
19 5 0.21
20 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATTTCATATTAAA
Found at i:14594613 original size:3 final size:3
Alignment explanation
Indices: 14594600--14594630 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
14594590 TTATAAATGT
14594600 ATA ATTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
14594631 GGTAATGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14595838 original size:19 final size:19
Alignment explanation
Indices: 14595811--14595859 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
14595801 AATTGATAAG
*
14595811 GATGAGAAATGGAAAATGA
1 GATGTGAAATGGAAAATGA
* *
14595830 GATGTGAAATGTAATATGA
1 GATGTGAAATGGAAAATGA
*
14595849 AATCGTGAAAT
1 GAT-GTGAAAT
14595860 TGGATGTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.47, C:0.02, G:0.27, T:0.24
Consensus pattern (19 bp):
GATGTGAAATGGAAAATGA
Found at i:14596855 original size:54 final size:54
Alignment explanation
Indices: 14596773--14596877 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
14596763 TGTTACATGA
14596773 CCGTGTGACCCAAGCCAATGAGTAACACGAGCAAAGACACAGGCTGGGACACGG
1 CCGTGTGACCCAAGCCAATGAGTAACACGAGCAAAGACACAGGCTGGGACACGG
* * * * * * * * *
14596827 CCGTGTGTCTCAAGTCAGTGAGTTACACGGGTAGAGACACGGGCTGGGACA
1 CCGTGTGACCCAAGCCAATGAGTAACACGAGCAAAGACACAGGCTGGGACA
14596878 TTATTATGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.32, T:0.14
Consensus pattern (54 bp):
CCGTGTGACCCAAGCCAATGAGTAACACGAGCAAAGACACAGGCTGGGACACGG
Found at i:14597610 original size:27 final size:27
Alignment explanation
Indices: 14597563--14597638 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
14597553 GCAATCAGTA
* *
14597563 TAATCAGTCAGGACAGTAAACATAGGG
1 TAATCCGTGAGGACAGTAAACATAGGG
* * * *
14597590 TAGTTCGTGAGGACAATAAACATGGGG
1 TAATCCGTGAGGACAGTAAACATAGGG
*
14597617 TAATCCGTTAGGACAGTAAACA
1 TAATCCGTGAGGACAGTAAACA
14597639 CGAAGAATAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.21
Consensus pattern (27 bp):
TAATCCGTGAGGACAGTAAACATAGGG
Found at i:14608688 original size:18 final size:19
Alignment explanation
Indices: 14608660--14608696 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14608650 ATCTACCATT
14608660 TCATATTCCATTTCACATC
1 TCATATTCCATTTCACATC
*
14608679 TCAT-TTCCATTTCTCATC
1 TCATATTCCATTTCACATC
14608697 CTTAGTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.32, G:0.00, T:0.46
Consensus pattern (19 bp):
TCATATTCCATTTCACATC
Found at i:14609475 original size:174 final size:174
Alignment explanation
Indices: 14609176--14609523 Score: 615
Period size: 174 Copynumber: 2.0 Consensus size: 174
14609166 CATTTCAATC
* * *
14609176 ATCATTAAATTCAATTTAATCCAAATGTACAAGAGTTCTCACTTCAAATACTTACCATACACAAT
1 ATCATTAAATTCAAGTCAATCCAAATGTACAAGAGTTCTCACCTCAAATACTTACCATACACAAT
***
14609241 CAATTCAATATGCAATAATTCATAATTTAGTTTGGATTATAGAAACACAAATTGTATATTTCGAG
66 CAATTCAATATGCAATAATTCATAATTTAGTTTGGATTATAGAAACACAAACCATATATTTCGAG
*
14609306 CTACTAGATGTCAACCTTGTCTTTCCCCTTCTTACTCAAGGATT
131 CTACTAGACGTCAACCTTGTCTTTCCCCTTCTTACTCAAGGATT
14609350 ATCATTAAATTCAAGTCAATCCAAATGTACAAGAGTTCTCACCTCAAATACTTACCATACACAAT
1 ATCATTAAATTCAAGTCAATCCAAATGTACAAGAGTTCTCACCTCAAATACTTACCATACACAAT
14609415 CAATTCAATATGCAATAATTCATAATTTAGTTTGGATTATAGAAACACAAACCATATATTTCGAG
66 CAATTCAATATGCAATAATTCATAATTTAGTTTGGATTATAGAAACACAAACCATATATTTCGAG
* *
14609480 CTACTCGACGTCAACCTTGTCTTTCCCCTTCTTACTCGAGGATT
131 CTACTAGACGTCAACCTTGTCTTTCCCCTTCTTACTCAAGGATT
14609524 TCGGAATGAC
Statistics
Matches: 165, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 165 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.34
Consensus pattern (174 bp):
ATCATTAAATTCAAGTCAATCCAAATGTACAAGAGTTCTCACCTCAAATACTTACCATACACAAT
CAATTCAATATGCAATAATTCATAATTTAGTTTGGATTATAGAAACACAAACCATATATTTCGAG
CTACTAGACGTCAACCTTGTCTTTCCCCTTCTTACTCAAGGATT
Found at i:14610928 original size:20 final size:20
Alignment explanation
Indices: 14610903--14610943 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14610893 GTTTTGTTAA
14610903 ACCAACTAATTTGCATTCCT
1 ACCAACTAATTTGCATTCCT
14610923 ACCAACTAATTTGCATTCCT
1 ACCAACTAATTTGCATTCCT
14610943 A
1 A
14610944 TACGATACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (20 bp):
ACCAACTAATTTGCATTCCT
Found at i:14611681 original size:22 final size:21
Alignment explanation
Indices: 14611648--14611721 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
14611638 TCAGAAGAGC
14611648 GGAATCGCGATACTGAGGCAT
1 GGAATCGCGATACTGAGGCAT
*
14611669 GGAAGTCGTGATAC-GA-GC--
1 GGAA-TCGCGATACTGAGGCAT
*
14611687 GGTATCGCGATACTGAGGCAT
1 GGAATCGCGATACTGAGGCAT
*
14611708 GGAAGTCGTGATAC
1 GGAA-TCGCGATAC
14611722 CCTTGACAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
17 8 0.19
18 5 0.12
19 2 0.05
20 2 0.05
21 9 0.21
22 16 0.38
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.20
Consensus pattern (21 bp):
GGAATCGCGATACTGAGGCAT
Found at i:14611698 original size:39 final size:39
Alignment explanation
Indices: 14611644--14611721 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
14611634 CCATTCAGAA
14611644 GAGCGGAATCGCGATACTGAGGCATGGAAGTCGTGATAC
1 GAGCGGAATCGCGATACTGAGGCATGGAAGTCGTGATAC
*
14611683 GAGCGGTATCGCGATACTGAGGCATGGAAGTCGTGATAC
1 GAGCGGAATCGCGATACTGAGGCATGGAAGTCGTGATAC
14611722 CCTTGACAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.36, T:0.19
Consensus pattern (39 bp):
GAGCGGAATCGCGATACTGAGGCATGGAAGTCGTGATAC
Found at i:14615922 original size:25 final size:26
Alignment explanation
Indices: 14615893--14615952 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
14615883 TTTCACCCCA
14615893 ATAAAATTTTGACAATTCTACCCT-G
1 ATAAAATTTTGACAATTCTACCCTCG
* * *
14615918 GTAAAATTTTGACGATTTTACCCTCG
1 ATAAAATTTTGACAATTCTACCCTCG
14615944 ATAAAATTT
1 ATAAAATTT
14615953 CGAGAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 21 0.70
26 9 0.30
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (26 bp):
ATAAAATTTTGACAATTCTACCCTCG
Found at i:14617761 original size:3 final size:3
Alignment explanation
Indices: 14617753--14617900 Score: 296
Period size: 3 Copynumber: 49.3 Consensus size: 3
14617743 CAGTGATTGG
14617753 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14617801 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14617849 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14617897 TTA T
1 TTA T
14617901 NNNNNNNNNN
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 145 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14618159 original size:15 final size:15
Alignment explanation
Indices: 14618139--14618175 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
14618129 TTATTTAATA
14618139 TTATTTAATAATATT
1 TTATTTAATAATATT
14618154 TTATTT-A-AATATT
1 TTATTTAATAATATT
14618167 TTA-TTAATA
1 TTATTTAATA
14618176 TTTTAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.10
13 10 0.50
14 2 0.10
15 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATTTAATAATATT
Found at i:14618174 original size:24 final size:25
Alignment explanation
Indices: 14618129--14618189 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 25
14618119 TTAGGTGAAA
14618129 TTATTTAATATTATTTAATAATATT
1 TTATTTAATATTATTTAATAATATT
*
14618154 TTATTTAA-A-TATTTTATTAATATT
1 TTATTTAATATTA-TTTAATAATATT
*
14618178 TTAAGTTAATAT
1 TT-ATTTAATAT
14618190 AAAAGAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 2 0.07
24 14 0.47
25 13 0.43
26 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TTATTTAATATTATTTAATAATATT
Found at i:14618189 original size:13 final size:11
Alignment explanation
Indices: 14618142--14618180 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
14618132 TTTAATATTA
*
14618142 TTTAATAATAT
1 TTTATTAATAT
14618153 TTTATTTAAATAT
1 TTTA-TT-AATAT
14618166 TTTATTAATAT
1 TTTATTAATAT
14618177 TTTA
1 TTTA
14618181 AGTTAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 13 0.52
12 3 0.12
13 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTATTAATAT
Found at i:14621077 original size:25 final size:25
Alignment explanation
Indices: 14621049--14621132 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
14621039 ACATGTAAAT
14621049 GGGAAGCTCTTTCGAGCCATATAAC
1 GGGAAGCTCTTTCGAGCCATATAAC
* ***
14621074 GGGAAGCTCATGT-GAGCTGCATAAC
1 GGGAAGCTC-TTTCGAGCCATATAAC
* * **
14621099 GGGAAGCTCTTGCGAGCCATTTATT
1 GGGAAGCTCTTTCGAGCCATATAAC
14621124 GGGAAGCTC
1 GGGAAGCTC
14621133 AAGAAAGAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
24 1 0.02
25 42 0.93
26 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (25 bp):
GGGAAGCTCTTTCGAGCCATATAAC
Found at i:14624535 original size:29 final size:30
Alignment explanation
Indices: 14624482--14624562 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
14624472 GAATTGTATG
*
14624482 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
*
14624512 AAATCAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
14624543 AAATCACAGTTCGTGTATAA
1 AAATCAAAGTTCATGTATAA
14624563 TTTTTGAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 22 0.50
30 5 0.11
31 17 0.39
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:14630602 original size:11 final size:11
Alignment explanation
Indices: 14630582--14630618 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
14630572 TGATGATGGA
14630582 AAAAAGGAAAAG
1 AAAAA-GAAAAG
14630594 AAAAAGAAAAG
1 AAAAAGAAAAG
14630605 AAAAAG-AAAG
1 AAAAAGAAAAG
14630615 AAAA
1 AAAA
14630619 GGAAGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 8 0.32
11 12 0.48
12 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:14630614 original size:10 final size:10
Alignment explanation
Indices: 14630590--14630627 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 10
14630580 GAAAAAAGGA
14630590 AAAGAAAAAG
1 AAAGAAAAAG
14630600 AAAAGAAAAAG
1 -AAAGAAAAAG
14630611 AAAG-AAAAG
1 AAAGAAAAAG
*
14630620 GAAGAAAA
1 AAAGAAAA
14630628 TGAGAGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 8 0.32
10 7 0.28
11 10 0.40
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:14631920 original size:44 final size:44
Alignment explanation
Indices: 14631870--14632077 Score: 285
Period size: 44 Copynumber: 4.7 Consensus size: 44
14631860 CACAAAGCTT
* *
14631870 TATCTCCCTGGTCAGCAGTGGAATATGTTGAAAATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14631914 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
14631958 TATTTCCTTGGTTAGCAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14632002 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
14632046 TATCTCCTTGAG-CAACAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
14632078 AATAGCAGAT
Statistics
Matches: 145, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
44 142 0.98
45 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:14632496 original size:44 final size:43
Alignment explanation
Indices: 14632441--14632939 Score: 190
Period size: 44 Copynumber: 11.5 Consensus size: 43
14632431 GAATAAGGCG
14632441 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * * *
14632485 AATCCTATCTCCCTGAAGTCGCAGTAGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* ** * * *
14632529 GATCTTATCTCTTTGAAGTTGCAGAGG-GCAGA-T--CGCATCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * * *
14632569 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
* * * * * *
14632612 AAGCCTTATC-CTTCTGAAGTTGTAGT-AAGGCAGACTGAAGATGGC--G
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A--GCAAT
*
14632658 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * *
14632702 AATCCTATCTCCCTGAAGTTGCAGTGGAG-TGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * * *
14632745 GATCTTACCTCTCTGAAGTTGCAG-AGAGCAAATT---GC-AT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
** * * *
14632783 CGGGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGACCCAATAAAGC--G
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG----ATTAAAGCAAT
* * * * * * *
14632830 AGTCTTATCTTCCTGAAGTTGTAGTGGGGCAGACTCAAGAAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * * * * * *
14632873 CAAGTCTTATCCCCCTAAAATTGCAGTGGGGCAGACTAAAGAAACA
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
* *
14632919 AATCTCATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTG
14632940 TAATGGAGTG
Statistics
Matches: 336, Mismatches: 80, Indels: 78
0.68 0.16 0.16
Matches are distributed among these distances:
37 1 0.00
39 3 0.01
40 43 0.13
41 15 0.04
42 6 0.02
43 39 0.12
44 127 0.38
45 93 0.28
46 5 0.01
47 1 0.00
48 2 0.01
49 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:14632690 original size:45 final size:44
Alignment explanation
Indices: 14632569--14632947 Score: 167
Period size: 45 Copynumber: 8.7 Consensus size: 44
14632559 GATCGCATCT
*
14632569 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCA
* * * *
14632613 AGCCTTATC-CTTCTGAAGTTGTAGT-AAGGCAGACTGAAG-ATGGCGA
1 AGTCTTATCTC-CCTGAAGTTGTAGTGGA-GCAGACT-AAGTA-AGC-A
* * *
14632659 A-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAA-TA
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAG-TAAGCA
* * * * *
14632703 A-TCCTATCTCCCTGAAGTTGCAGTGGAG-TGATTAA--AATCA
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCA
* * * * * * * * *
14632743 CAGATCTTACCTCTCTGAAGTTGCAG-AGAGCA-AAT-TG-CATCG
1 -AG-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCA
* * * * *
14632785 GGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGACCCAA-TAAAGCG
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CTAAGT-AAGCA
* * * *
14632830 AGTCTTATCTTCCTGAAGTTGTAGTGGGGCAGACTCAAGAAATCA
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAGTAAGCA
* * * * * *
14632875 AGTCTTATCCCCCTAAAATTGCAGTGGGGCAGACTAAAG-AAACA
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAGTAAGCA
* * * *
14632919 AATCTCATCTCCCTAAAGTTGTAATGGAG
1 AGTCTTATCTCCCTGAAGTTGTAGTGGAG
14632948 TGGATTAGAA
Statistics
Matches: 254, Mismatches: 58, Indels: 46
0.71 0.16 0.13
Matches are distributed among these distances:
39 2 0.01
40 21 0.08
41 6 0.02
42 11 0.04
43 25 0.10
44 82 0.32
45 102 0.40
46 4 0.02
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCA
Found at i:14632848 original size:217 final size:217
Alignment explanation
Indices: 14632426--14632913 Score: 669
Period size: 217 Copynumber: 2.2 Consensus size: 217
14632416 GCAATTTAAA
*
14632426 AGACTGAATAAGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGAAGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
* * *
14632491 ATCTCCCTGAAGTCGCAGTAGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGAGG
66 ATCTCCCTGAAGTCGCAGTAGAGCGGATTAAAATCACAGATCTTACCTCTCTGAAGTTGCAGAGA
* * * *
14632556 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTAT
131 GCAAATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGACCAAGTAAGCAAGCCTTAT
14632621 CCTTCTGAAGTTGTAGTAAGGC
196 CCTTCTGAAGTTGTAGTAAGGC
* *
14632643 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGAAGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
* * *
14632708 ATCTCCCTGAAGTTGCAGTGGAG-TGATTAAAATCACAGATCTTACCTCTCTGAAGTTGCAGAGA
66 ATCTCCCTGAAGTCGCAGTAGAGCGGATTAAAATCACAGATCTTACCTCTCTGAAGTTGCAGAGA
* * * *
14632772 GCAAATTGCATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGACCCAA-TAAAGCGAGTCTT
131 GCAAATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGA-CCAAGT-AAGCAAGCCTT
**
14632836 AT-CTTCCTGAAGTTGTAGTGGGGC
194 ATCCTT-CTGAAGTTGTAGTAAGGC
* ** * * * * *
14632860 AGACTCAAGAAATC-AAGTCTTATCCCCCTAAAATTGCAGTGGGGCAGACTAAAG
1 AGACTGAAGAAGGCGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
14632914 AAACAAATCT
Statistics
Matches: 238, Mismatches: 29, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
216 84 0.35
217 154 0.65
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (217 bp):
AGACTGAAGAAGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
ATCTCCCTGAAGTCGCAGTAGAGCGGATTAAAATCACAGATCTTACCTCTCTGAAGTTGCAGAGA
GCAAATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGAAGACCAAGTAAGCAAGCCTTAT
CCTTCTGAAGTTGTAGTAAGGC
Found at i:14633482 original size:19 final size:19
Alignment explanation
Indices: 14633458--14633520 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
14633448 AATCTTCAAG
14633458 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
14633477 GATATGTAATCTTAAATAT
1 GATATGCAATCTTAGATAT
14633496 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14633515 GATATG
1 GATATG
14633521 ATATGCAATC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14633519 original size:24 final size:22
Alignment explanation
Indices: 14633458--14633558 Score: 106
Period size: 19 Copynumber: 4.7 Consensus size: 22
14633448 AATCTTCAAG
14633458 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
14633477 GATATGTAATCTT--AA-ATAT
1 GATATGCAATCTTAGAAGATAT
14633496 GATATGCAATCTTAGATATGATAT
1 GATATGCAATCTTAGA-A-GATAT
14633520 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14633542 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14633559 GATTTAATTT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
19 28 0.39
20 1 0.01
21 1 0.01
22 8 0.11
23 13 0.18
24 20 0.28
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14634227 original size:14 final size:14
Alignment explanation
Indices: 14634210--14634237 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14634200 ATATGATATG
14634210 ATTTAAAAAATAAA
1 ATTTAAAAAATAAA
14634224 ATTTAAAAAATAAA
1 ATTTAAAAAATAAA
14634238 TATATACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATTTAAAAAATAAA
Found at i:14639612 original size:40 final size:40
Alignment explanation
Indices: 14639528--14639712 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
14639518 TTGAATGCTG
* * * *
14639528 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
* *
14639568 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
14639608 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * * *
14639648 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
14639687 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14639713 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 82 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:14654228 original size:25 final size:25
Alignment explanation
Indices: 14654171--14654244 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 25
14654161 TATAAACTTG
* * *
14654171 TATGAGCTTTCTGTTATACGGCCCA
1 TATGAGCTTCCTGTTATATGGCTCA
* *
14654196 GATAAGCTTCCTGTTATATGGCTCA
1 TATGAGCTTCCTGTTATATGGCTCA
*
14654221 TATGAGCTTCCCGTTATATGGCTC
1 TATGAGCTTCCTGTTATATGGCTC
14654245 TAGAGTGTGC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (25 bp):
TATGAGCTTCCTGTTATATGGCTCA
Found at i:14663280 original size:13 final size:13
Alignment explanation
Indices: 14663262--14663286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14663252 TCGTTCCATA
14663262 ACAATTGCTCCCT
1 ACAATTGCTCCCT
14663275 ACAATTGCTCCC
1 ACAATTGCTCCC
14663287 CTCTTGCAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.08, T:0.28
Consensus pattern (13 bp):
ACAATTGCTCCCT
Found at i:14667024 original size:102 final size:101
Alignment explanation
Indices: 14666848--14667241 Score: 417
Period size: 102 Copynumber: 3.9 Consensus size: 101
14666838 TGTCGATGAA
* * * * *
14666848 CACGTATGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATGGTCACATGCGTAGTAC
1 CACGTATGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAAT-ATGATCACATGTGTAGTAC
*
14666913 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG
65 TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTGAG
* * * * *
14666950 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTAGTAC
1 CACGTATGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAA-TATGATCACATGTGTAGTAC
* * *
14667015 TAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTG-G
65 TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTGAG
* * * * *
14667051 TCACGTATGTAGTACTATGTGAAGGCTACTACG-GGAGCCGTAAA-ACTTGATCACGTGTGCAGT
1 -CACGTATGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAATA--TGATCACATGTGTAGT
* *
14667114 ACTATGTGAAGGCTACTACGTG-AGCCGTAAAA-C-TTGAC
63 ACTAAGTGAAGGCTACTACGTGTA-CCG-AAAAGCTTTGAG
* * * *
14667152 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACAGTAAA-ACTGATCACGTGTGTAGTAC
1 CACGTATGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAATA-TGATCACATGTGTAGTAC
* *
14667215 TATGTGAAGGCTACTACGTGTATCGAA
65 TAAGTGAAGGCTACTACGTGTACCGAA
14667242 TGATAAAAAT
Statistics
Matches: 254, Mismatches: 29, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
98 2 0.01
99 40 0.16
100 44 0.17
101 44 0.17
102 123 0.48
103 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (101 bp):
CACGTATGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAATATGATCACATGTGTAGTACT
AAGTGAAGGCTACTACGTGTACCGAAAAGCTTTGAG
Found at i:14667118 original size:50 final size:49
Alignment explanation
Indices: 14666848--14667232 Score: 330
Period size: 51 Copynumber: 7.7 Consensus size: 49
14666838 TGTCGATGAA
* * * * * * *
14666848 CACGTATGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG-GGACCG-TAAA-ACTTGAT
* * * * * *
14666899 CACATGCGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG-GGACCGTAAAA-C-TTGAT
* * * * *
14666950 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGT-AAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG-GGA-CCGTAAAACT-TGAT
* * * * * *
14667001 TACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGGG-ACCGTAAAA-C-TTGAT
*
14667052 CACGTATGTAGTACTATGTGAAGGCTACTACGGGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGGGA-CCGTAAAACTTGAT
* * *
14667102 CACGTGTGCAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGGGA-CCGTAAAACTTGAT
* *
14667152 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACAGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG-GGACCGTAAAACTTGAT
14667201 CACGTGTGTAGTACTATGTGAAGGCTACTACG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG
14667233 TGTATCGAAT
Statistics
Matches: 278, Mismatches: 43, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.00
49 38 0.14
50 97 0.35
51 132 0.47
52 10 0.04
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGGGACCGTAAAACTTGAT
Found at i:14674714 original size:50 final size:50
Alignment explanation
Indices: 14674504--14675560 Score: 1687
Period size: 50 Copynumber: 21.1 Consensus size: 50
14674494 TCACATGCTT
* * * * *
14674504 AGTACTAAGTGAAGGCTACTATGTGTA-TCG-AAAAGCTTTGAGCACGTGTGT
1 AGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAA-C-TTGATCACGTGTGC
* * * * * * * * *
14674555 AGTATTGTGTGAATGCTACTACGTGTATCGGT-AAACTATGGTTACATGTGT
1 AGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACGTGTGC
* * * * * * *
14674606 AGTACTAAGTGAAGGCTACAATGGGTA-CCG-AAAAGCTTTGGTCACGTATGT
1 AGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAA-C-TTGATCACGTGTGC
14674657 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674707 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674757 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674807 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674857 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674907 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14674957 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675007 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675057 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675107 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675157 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675207 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675257 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675307 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675357 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
* * *
14675407 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGACCACATGTGT
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
* * * * *
14675457 AGTACTATGTAAAGGCTACTACGTGAACAGTAAAAC-TGATCATGTGTGT
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
* * * * *
14675506 AGTACTATGTAAAGGCTACTACGTGAACAGTAAAA-TTGATCATGTGTGT
1 AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
14675555 AGTACT
1 AGTACT
14675561 GCGAAAATAG
Statistics
Matches: 959, Mismatches: 38, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
49 64 0.07
50 798 0.83
51 88 0.09
52 9 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (50 bp):
AGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGATCACGTGTGC
Found at i:14675696 original size:7 final size:7
Alignment explanation
Indices: 14675686--14675710 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14675676 TTTTTTTCAT
14675686 TTTTCCC
1 TTTTCCC
14675693 TTTTCCC
1 TTTTCCC
14675700 TTTTCCC
1 TTTTCCC
14675707 TTTT
1 TTTT
14675711 TTAAAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTCCC
Found at i:14678696 original size:14 final size:14
Alignment explanation
Indices: 14678668--14678706 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14678658 GTTTCTTCCA
*
14678668 TTTTCTCTTTCTTTT
1 TTTTCT-TTTGTTTT
14678683 TTTTCTTTTGTTTT
1 TTTTCTTTTGTTTT
*
14678697 TTTTTTTTTG
1 TTTTCTTTTG
14678707 GGGGGGGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTGTTTT
Found at i:14684569 original size:18 final size:19
Alignment explanation
Indices: 14684548--14684588 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
14684538 AAATTTCAAT
14684548 TTTTTAAAA-TA-TTTGAA
1 TTTTTAAAATTATTTTGAA
*
14684565 CTTTTAAAATTATTTTGAA
1 TTTTTAAAATTATTTTGAA
14684584 TTTTT
1 TTTTT
14684589 CAGTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 8 0.40
18 2 0.10
19 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTAAAATTATTTTGAA
Found at i:14695385 original size:22 final size:23
Alignment explanation
Indices: 14695359--14695402 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
14695349 TGTCTTGCCA
* *
14695359 TTAAAGATGTTAA-TTGTTTTTG
1 TTAAAGATCTTAACTTATTTTTG
14695381 TTAAAGATCTTAACTTATTTTT
1 TTAAAGATCTTAACTTATTTTT
14695403 ATTAGGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.55
Consensus pattern (23 bp):
TTAAAGATCTTAACTTATTTTTG
Found at i:14706388 original size:98 final size:98
Alignment explanation
Indices: 14706280--14706466 Score: 252
Period size: 98 Copynumber: 1.9 Consensus size: 98
14706270 AACCTCATTG
* * **
14706280 ATTTACGATCACAACTTTAGTTCATTGATTTACAATCAT-AAACAACTCATTTAGAGTGT-GTTG
1 ATTTACGATCACAACTTTAGTTCATTAATTTACAATCATGAAA-AACTCATTTAGAGT-TCATCA
14706343 ATTTACGATCGCAAATCCATTCAAACAATTTTTTT
64 ATTTACGATCGCAAATCCATTCAAACAATTTTTTT
* * * *
14706378 ATTTATGATCACAGCTTTAGTTTATTAATTTACGATCATGAAAAACTCATTTAGAGTTCATCAAT
1 ATTTACGATCACAACTTTAGTTCATTAATTTACAATCATGAAAAACTCATTTAGAGTTCATCAAT
* *
14706443 TTAGGATCGCAATTCCATTCAAAC
66 TTACGATCGCAAATCCATTCAAAC
14706467 TGTTTGCTTA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
97 1 0.01
98 73 0.95
99 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (98 bp):
ATTTACGATCACAACTTTAGTTCATTAATTTACAATCATGAAAAACTCATTTAGAGTTCATCAAT
TTACGATCGCAAATCCATTCAAACAATTTTTTT
Found at i:14709406 original size:51 final size:51
Alignment explanation
Indices: 14709259--14709396 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 51
14709249 CTACCATCAA
* * *
14709259 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTACATATCATATATAAG
* * ** * * * * *
14709310 ATATGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTACATATCATATATAAG
14709361 ATCTCTAAGATTATAATATCATATCTTCTAAGATTA
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTA
14709397 GTTACCATAT
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTCTAAGATTACATATCATATATAAG
Found at i:14712163 original size:51 final size:51
Alignment explanation
Indices: 14712064--14712196 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
14712054 CCATCAAATC
* * *
14712064 TCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATA
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
* ** * * * ** *
14712115 TGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATC
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
*
14712166 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATCATATCTTATAAGAT
14712197 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
Found at i:14716335 original size:19 final size:19
Alignment explanation
Indices: 14716311--14716355 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
14716301 ACCTTTTATG
*
14716311 CACACATGATTCCACTAAT
1 CACACATGATTCCACAAAT
*
14716330 CACACATGGTTCCACAAAT
1 CACACATGATTCCACAAAT
*
14716349 CAAACAT
1 CACACAT
14716356 CATAAACGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (19 bp):
CACACATGATTCCACAAAT
Found at i:14722923 original size:29 final size:29
Alignment explanation
Indices: 14722882--14722984 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 29
14722872 TTGCACTTAG
* *
14722882 GTGCAATAATAGAACAGAGTGGCACCGAA
1 GTGCAGTATTAGAACAGAGTGGCACCGAA
* ****
14722911 GTGCAGTATTAGAATAGAACAACACCGAA
1 GTGCAGTATTAGAACAGAGTGGCACCGAA
* ** * *
14722940 CTGCTTTATCATAACAGAGTGGCACCGAA
1 GTGCAGTATTAGAACAGAGTGGCACCGAA
14722969 GTGCAGTATTAGAACA
1 GTGCAGTATTAGAACA
14722985 AAAAGCGCTG
Statistics
Matches: 52, Mismatches: 22, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.19
Consensus pattern (29 bp):
GTGCAGTATTAGAACAGAGTGGCACCGAA
Found at i:14733577 original size:5 final size:5
Alignment explanation
Indices: 14733567--14733595 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14733557 GTGAGGAAAA
14733567 GGGAT GGGAT GGGAT GGGAT GGGAT GGGA
1 GGGAT GGGAT GGGAT GGGAT GGGAT GGGA
14733596 AGAAAAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.17
Consensus pattern (5 bp):
GGGAT
Found at i:14738468 original size:5 final size:6
Alignment explanation
Indices: 14738417--14738543 Score: 60
Period size: 6 Copynumber: 21.7 Consensus size: 6
14738407 TTTTAATAGT
* *
14738417 TTAATA TTAA-A TTAA-A TTTAATA CTT-ATC TTAATA TTATTTTA TTAAT-
1 TTAATA TTAATA TTAATA -TTAATA -TTAATA TTAATA TTA--ATA TTAATA
* * *
14738465 TTAATA TTAAAGTGA TT-ATC TTAATA TTAA-A TTAA-A TCTAATA TTTATC
1 TTAATA TT-AA-T-A TTAATA TTAATA TTAATA TTAATA T-TAATA TTAATA
14738514 TTAATA --AATA TT-ATA TTAAT- TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
14738544 AGTGATTAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
4 4 0.04
5 32 0.34
6 41 0.44
7 8 0.09
8 6 0.06
9 3 0.03
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:14738472 original size:11 final size:12
Alignment explanation
Indices: 14738417--14738543 Score: 60
Period size: 11 Copynumber: 10.8 Consensus size: 12
14738407 TTTTAATAGT
14738417 TTAATATTAA-A
1 TTAATATTAATA
14738428 TTAA-ATTTAATA
1 TTAATA-TTAATA
*
14738440 CTT-ATCTTAATA
1 -TTAATATTAATA
*
14738452 TTATTTTATTAAT-
1 TTA--ATATTAATA
14738465 TTAATATTAAAGTGA
1 TTAATATT-AA-T-A
*
14738480 TT-ATCTTAATA
1 TTAATATTAATA
14738491 TTAA-ATTAA-A
1 TTAATATTAATA
* *
14738501 TCTAATATTTATC
1 T-TAATATTAATA
14738514 TTAATA--AATA
1 TTAATATTAATA
14738524 TT-ATATTAAT-
1 TTAATATTAATA
14738534 TTAATATTAA
1 TTAATATTAA
14738544 AGTGATTAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 36
0.66 0.07 0.27
Matches are distributed among these distances:
9 3 0.03
10 9 0.10
11 34 0.39
12 21 0.24
13 9 0.10
14 10 0.11
15 2 0.02
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (12 bp):
TTAATATTAATA
Found at i:14738491 original size:68 final size:69
Alignment explanation
Indices: 14738417--14738551 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 69
14738407 TTTTAATAGT
* * *
14738417 TTAATATTAAATTAAATTTAATACTTATCTTAAT-ATTATTTTATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATCTAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
14738481 TATC
66 TATC
*
14738485 TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATCTAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
14738550 TA
66 TA
14738552 ATTTTTTTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 32 0.52
69 30 0.48
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50
Consensus pattern (69 bp):
TTAATATTAAATTAAATCTAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
TATC
Found at i:14743600 original size:22 final size:22
Alignment explanation
Indices: 14743575--14743616 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
14743565 CTTTCTTTCC
14743575 CTAACAAGTTGGACTTTGCTCT
1 CTAACAAGTTGGACTTTGCTCT
14743597 CTAACAAGTTGGACTTTGCT
1 CTAACAAGTTGGACTTTGCT
14743617 TTTAGCGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (22 bp):
CTAACAAGTTGGACTTTGCTCT
Found at i:14749513 original size:15 final size:15
Alignment explanation
Indices: 14749495--14749524 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14749485 TCCATAAGGA
14749495 TCGGAAGAATAAAAT
1 TCGGAAGAATAAAAT
14749510 TCGGAAGAATAAAAT
1 TCGGAAGAATAAAAT
14749525 GATAGCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
TCGGAAGAATAAAAT
Found at i:14752173 original size:68 final size:68
Alignment explanation
Indices: 14752099--14752228 Score: 190
Period size: 68 Copynumber: 1.9 Consensus size: 68
14752089 AATAGTTTAA
* * * *
14752099 TATTAAATTTAATTTAATACTTATCTTAAT-ATTATTTTATTAATTTAATATTAATGTGATTATC
1 TATTAAA-TTAATATAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGATTATC
14752163 TTAG
65 TTAG
* *
14752167 TATTAAATTCATATAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGATTA
1 TATTAAATTAATATAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGATTA
14752229 ATTTTTTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 19 0.35
68 36 0.65
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (68 bp):
TATTAAATTAATATAATACTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGATTATCT
TAG
Found at i:14752201 original size:21 final size:20
Alignment explanation
Indices: 14752177--14752216 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14752167 TATTAAATTC
*
14752177 ATATAATATTTATCTTAATAA
1 ATATAATATTAAT-TTAATAA
*
14752198 ATATTATATTAATTTAATA
1 ATATAATATTAATTTAATA
14752217 TTAAAGTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATAATATTAATTTAATAA
Found at i:14754681 original size:58 final size:59
Alignment explanation
Indices: 14754632--14754747 Score: 146
Period size: 61 Copynumber: 2.0 Consensus size: 59
14754622 ATCACTTTAA
* * *
14754632 TATTAAATTAATATAATAGTTATC-C-AGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAAAATAATAGTTATCACAAAATAAATATTAAATTAAATTTAATATTAAA-C
* * *
14754690 TATTTAATTAAAATAATATTTATCTACAAAATAAATATTAAATTTAATTTAATATTAA
1 TATTAAATTAAAATAATAGTTATC-ACAAAATAAATATTAAATTAAATTTAATATTAA
14754748 GATAATCACT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 21 0.43
60 1 0.02
61 27 0.55
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (59 bp):
TATTAAATTAAAATAATAGTTATCACAAAATAAATATTAAATTAAATTTAATATTAAAC
Found at i:14754816 original size:12 final size:12
Alignment explanation
Indices: 14754799--14754823 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14754789 TACGTATTAA
14754799 ATTAAAATTATT
1 ATTAAAATTATT
14754811 ATTAAAATTATT
1 ATTAAAATTATT
14754823 A
1 A
14754824 AAATAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAAAATTATT
Found at i:14763218 original size:17 final size:16
Alignment explanation
Indices: 14763166--14763219 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
14763156 ATAAATTTGC
*
14763166 TTAAAAATATTAATAAT
1 TTAAAAATAAT-ATAAT
14763183 TATAAAAA-AATAT--T
1 T-TAAAAATAATATAAT
14763197 TTAAAAATAATCATAAT
1 TTAAAAATAAT-ATAAT
14763214 TTAAAA
1 TTAAAA
14763220 TAAAGTGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
13 6 0.19
14 5 0.16
15 2 0.06
16 2 0.06
17 10 0.32
18 6 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAAAATAATATAAT
Found at i:14769201 original size:21 final size:22
Alignment explanation
Indices: 14769153--14769199 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
14769143 AAGTTTATGT
* *
14769153 AAAAATGGAAATAATATTTTTC
1 AAAAATGGAAATAAGATTTTTA
14769175 AAAAAT-G-AATAAGATTTTTA
1 AAAAATGGAAATAAGATTTTTA
14769195 AAAAA
1 AAAAA
14769200 ATAGCATCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 16 0.70
21 1 0.04
22 6 0.26
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (22 bp):
AAAAATGGAAATAAGATTTTTA
Found at i:14776994 original size:98 final size:95
Alignment explanation
Indices: 14776828--14777020 Score: 278
Period size: 98 Copynumber: 2.0 Consensus size: 95
14776818 TAGAAGAAGT
* ** * *
14776828 ATAGTCCTATACGAATACTTGTGCACATTGAACTTTTCAGGCTGGATCAAATAGGATTGAGTCAC
1 ATAGTCCTATACGAAAACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAGGATTGAGTCAC
*
14776893 ACAAGTTTAACATGTCAAATGAACTCTTGC
66 ACAAGTCTAACATGTCAAATGAACTCTTGC
*
14776923 ATAGTCCTATACGAGTACAACTTGTGCACATCAAACTTTTCAGGCTGAATCTAACAGGATTGAGT
1 ATAGTCCTATACGA--A-AACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAGGATTGAGT
* *
14776988 CACACAAGTCTAATATGTCAAATGCACTCTTGC
63 CACACAAGTCTAACATGTCAAATGAACTCTTGC
14777021 TTCTATTTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
95 14 0.16
97 1 0.01
98 71 0.83
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (95 bp):
ATAGTCCTATACGAAAACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAGGATTGAGTCAC
ACAAGTCTAACATGTCAAATGAACTCTTGC
Found at i:14788087 original size:114 final size:114
Alignment explanation
Indices: 14787887--14788116 Score: 408
Period size: 114 Copynumber: 2.0 Consensus size: 114
14787877 AATTTCTGTT
* *
14787887 CTATATTTAACTTCTTTTCCCTACTTATTCTACATCACTGATGCACCAAATATTTACTAAAAGGG
1 CTATATTTAACTTCTTTTCCCTACCTATTCTACATCACTGATGCACCAAATATTTACCAAAAGGG
14787952 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
66 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
* *
14788001 CTATATTTAA-TTCCTTTTCCCTACCTATTCTACATCACTGATGCACCTACTATTTACCAAAAGG
1 CTATATTTAACTT-CTTTTCCCTACCTATTCTACATCACTGATGCACCAAATATTTACCAAAAGG
14788065 GAAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
65 GAAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
14788115 CT
1 CT
14788117 TTGGAATTAT
Statistics
Matches: 111, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 2 0.02
114 109 0.98
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (114 bp):
CTATATTTAACTTCTTTTCCCTACCTATTCTACATCACTGATGCACCAAATATTTACCAAAAGGG
AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
Found at i:14793880 original size:33 final size:33
Alignment explanation
Indices: 14793840--14793910 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
14793830 ATAACAATCC
14793840 TTTTAGGTGTAATTTATAAGGAGGATGTATGCT
1 TTTTAGGTGTAATTTATAAGGAGGATGTATGCT
14793873 TTTTAGGTGTAATTTATAAGGAGGATGTATGCT
1 TTTTAGGTGTAATTTATAAGGAGGATGTATGCT
14793906 TTTTA
1 TTTTA
14793911 CTTTCGAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.27, C:0.03, G:0.25, T:0.45
Consensus pattern (33 bp):
TTTTAGGTGTAATTTATAAGGAGGATGTATGCT
Found at i:14797863 original size:242 final size:242
Alignment explanation
Indices: 14797435--14797921 Score: 911
Period size: 242 Copynumber: 2.0 Consensus size: 242
14797425 CTATTTATAG
*
14797435 TTGAGCTCCCTTCAAACTGACGGTATAGCTCGAACTACATCAACGGATGAGATTAAGCCTATCCC
1 TTGAGCTCCCTTCAAACTGACGGTATAGATCGAACTACATCAACGGATGAGATTAAGCCTATCCC
14797500 TAAAATCAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
66 TAAAATCAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
*
14797565 CACAATCTTCTAAGATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
131 CACAATCTTCTAAGATTAATTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
14797630 GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
196 GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
* *
14797677 TTGAGCTCCCTTCAAACTGATGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
1 TTGAGCTCCCTTCAAACTGACGGTATAGATCGAACTACATCAACGGATGAGATTAAGCCTATCCC
*
14797742 TAAAATTAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
66 TAAAATCAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
* *
14797807 CACAATCTTCTAAGATTAATTTCCCTATTTATCAAGGTAGCCTAACTTCTTATATCTGCATCATT
131 CACAATCTTCTAAGATTAATTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
14797872 GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
196 GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
14797919 TTG
1 TTG
14797922 GGTCAAATGA
Statistics
Matches: 238, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
242 238 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (242 bp):
TTGAGCTCCCTTCAAACTGACGGTATAGATCGAACTACATCAACGGATGAGATTAAGCCTATCCC
TAAAATCAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
CACAATCTTCTAAGATTAATTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
Found at i:14799412 original size:14 final size:14
Alignment explanation
Indices: 14799393--14799432 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14799383 TTGATTGCCA
14799393 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
14799407 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
14799421 GGAAAATGTTTT
1 GTAAAATGTTTT
14799433 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:14799441 original size:20 final size:20
Alignment explanation
Indices: 14799416--14799455 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14799406 CGTAAAATGA
*
14799416 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
14799436 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14799456 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14799445 original size:34 final size:35
Alignment explanation
Indices: 14799401--14799467 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14799391 CAGTAAAATG
*
14799401 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14799435 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14799468 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14799471 original size:14 final size:15
Alignment explanation
Indices: 14799395--14799471 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14799385 GATTGCCAGT
* *
14799395 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
14799409 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
14799423 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
14799443 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
14799458 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
14799472 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:14802290 original size:6 final size:6
Alignment explanation
Indices: 14802279--14802490 Score: 141
Period size: 6 Copynumber: 36.5 Consensus size: 6
14802269 AGATGAAACT
* * * *
14802279 AGAGAG AGAGAG AG-GAG AGAGGG AGAGAG AGGGAG AGAGGG AGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * *
14802326 A-AG-G AGGGAG AGAGAG GGAGAG AAAGAG AGGGAG GGAGAG AGAGCG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * *
14802372 AGCGAG AGGGAG GGAGAG AGAGAG GGAGAG GGAGAA AGAGAA AGGGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * *
14802420 AAAGAG AGAGAG AGGGA- AG-GGG AGAG-G AG-GAG AGGGAG AGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * *
14802464 AGAAAG AGAGAG AGAAAA AGAGAG AGA
1 AGAGAG AGAGAG AGAGAG AGAGAG AGA
14802491 AGGTGAAAAT
Statistics
Matches: 158, Mismatches: 41, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
4 4 0.03
5 18 0.11
6 136 0.86
ACGTcount: A:0.44, C:0.01, G:0.55, T:0.00
Consensus pattern (6 bp):
AGAGAG
Found at i:14802324 original size:14 final size:14
Alignment explanation
Indices: 14802280--14802466 Score: 106
Period size: 14 Copynumber: 13.3 Consensus size: 14
14802270 GATGAAACTA
*
14802280 GAGAGAGAGAGAGG
1 GAGAGGGAGAGAGG
14802294 AGAGAGGGAGAGAGAGG
1 -GAGA-GG-GAGAGAGG
14802311 GAGAGAGG-GAGAGG
1 GAGAG-GGAGAGAGG
14802325 GAAGGAGGGAGAGAGAGG
1 G-A-GA-GG-GAGAGAGG
**
14802343 GAGAGAAAGAGAGG
1 GAGAGGGAGAGAGG
*
14802357 GAG-GGAGAGAGAGC
1 GAGAGG-GAGAGAGG
* * *
14802371 GAGCGAGAGGGAGG
1 GAGAGGGAGAGAGG
14802385 GAGA--GAGAGAGG
1 GAGAGGGAGAGAGG
* *
14802397 GAGAGGGAGAAAGA
1 GAGAGGGAGAGAGG
*
14802411 GAAAGGGAGA-A--
1 GAGAGGGAGAGAGG
*
14802422 -AGAGAGAGAGAGG
1 GAGAGGGAGAGAGG
14802435 GA-AGGG-GAGAGGAG
1 GAGAGGGAGAGA-G-G
14802449 GAGAGGGAGAGAGG
1 GAGAGGGAGAGAGG
14802463 GAGA
1 GAGA
14802467 AAGAGAGAGA
Statistics
Matches: 135, Mismatches: 17, Indels: 41
0.70 0.09 0.21
Matches are distributed among these distances:
10 7 0.05
11 1 0.01
12 15 0.11
13 6 0.04
14 59 0.44
15 14 0.10
16 15 0.11
17 11 0.08
18 7 0.05
ACGTcount: A:0.41, C:0.01, G:0.58, T:0.00
Consensus pattern (14 bp):
GAGAGGGAGAGAGG
Found at i:14802338 original size:32 final size:32
Alignment explanation
Indices: 14802279--14802477 Score: 182
Period size: 32 Copynumber: 6.4 Consensus size: 32
14802269 AGATGAAACT
14802279 AGAGAGAGAGAGAGGAGAGAGGGAGAGAGAGGG
1 AGAGAGAGAGAG-GGAGAGAGGGAGAGAGAGGG
*
14802312 AGAGAGGGAGAGGGA-AGGAGGGAGAGAGAGGG
1 AGAGAGAGAGAGGGAGA-GAGGGAGAGAGAGGG
* *
14802344 AGAGA-A-AGA--GAGGGAGGGAGAGAGAGCG
1 AGAGAGAGAGAGGGAGAGAGGGAGAGAGAGGG
* * * *
14802372 AGCGAGAGGGAGGGAGAGAGAGAGGGAGAGGG
1 AGAGAGAGAGAGGGAGAGAGGGAGAGAGAGGG
* * * *
14802404 AGAAAGAGAAAGGGAGAAAGAGAGAGAGAGGG
1 AGAGAGAGAGAGGGAGAGAGGGAGAGAGAGGG
*
14802436 A-AG-GGGAGA-GGAGGAGAGGGAGAGAG-GGAG
1 AGAGAGAGAGAGGGA-GAGAGGGAGAGAGAGG-G
*
14802466 AAAGAGAGAGAG
1 AGAGAGAGAGAG
14802478 AAAAAGAGAG
Statistics
Matches: 133, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
28 20 0.15
29 6 0.05
30 22 0.17
31 4 0.03
32 70 0.53
33 11 0.08
ACGTcount: A:0.42, C:0.01, G:0.57, T:0.00
Consensus pattern (32 bp):
AGAGAGAGAGAGGGAGAGAGGGAGAGAGAGGG
Found at i:14802342 original size:42 final size:41
Alignment explanation
Indices: 14802279--14802478 Score: 182
Period size: 42 Copynumber: 4.9 Consensus size: 41
14802269 AGATGAAACT
*
14802279 AGAGAGA-GAGAGAGGAGAGAGGGAGAGAGAGGGAGAGAGGG
1 AGAGAGAGGAGGGA-GAGAGAGGGAGAGAGAGGGAGAGAGGG
* * * *
14802320 AGAGGGAAGGAGGGAGAGAGAGGGAGAGAAAGAGAGGGAGGG
1 AGAGAG-AGGAGGGAGAGAGAGGGAGAGAGAGGGAGAGAGGG
* *
14802362 AGAGAGAGCGAGCGAGAGGGAGGGAGAGAGAGAGG-GAGAGGG
1 AGAGAGAG-GAGGGAGAGAGAGGGAGAGAGAG-GGAGAGAGGG
* * *
14802404 AGAAAGAGAAAGGGAGA-A-AGAGAGAGAGAGGGA-AG-GGG
1 AGAGAGAG-GAGGGAGAGAGAGGGAGAGAGAGGGAGAGAGGG
* *
14802442 AGAG-GAGGAGAGG-GAGAGAGGGAGAAAGAGAGAGAGA
1 AGAGAGAGGAG-GGAGAGAGAGGGAGAGAGAGGGAGAGA
14802479 AAAAGAGAGA
Statistics
Matches: 127, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
36 4 0.03
37 6 0.05
38 18 0.14
39 6 0.05
40 11 0.09
41 7 0.06
42 69 0.54
43 6 0.05
ACGTcount: A:0.42, C:0.01, G:0.56, T:0.00
Consensus pattern (41 bp):
AGAGAGAGGAGGGAGAGAGAGGGAGAGAGAGGGAGAGAGGG
Found at i:14802426 original size:20 final size:20
Alignment explanation
Indices: 14802388--14802432 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14802378 AGGGAGGGAG
* **
14802388 AGAGAGAGGGAGAGGGAGAA
1 AGAGAAAGGGAGAAAGAGAA
*
14802408 AGAGAAAGGGAGAAAGAGAG
1 AGAGAAAGGGAGAAAGAGAA
14802428 AGAGA
1 AGAGA
14802433 GGGAAGGGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (20 bp):
AGAGAAAGGGAGAAAGAGAA
Found at i:14802472 original size:14 final size:14
Alignment explanation
Indices: 14802279--14802489 Score: 102
Period size: 14 Copynumber: 14.6 Consensus size: 14
14802269 AGATGAAACT
*
14802279 AGAGAGAGAGAG-A
1 AGAGAGAGGGAGAA
* *
14802292 GGAGAGAGGGAGAG
1 AGAGAGAGGGAGAA
* * **
14802306 AGAGGGAGAGAGGG
1 AGAGAGAGGGAGAA
* * **
14802320 AGAGGGAAGGAGGG
1 AGAGAGAGGGAGAA
14802334 AGAGAGAGGGAGAGA
1 AGAGAGAGGGAGA-A
**
14802349 A-AGAGAGGGAGGG
1 AGAGAGAGGGAGAA
* **
14802362 AGAGAGAGCGAGCG
1 AGAGAGAGGGAGAA
*
14802376 AGAGGGAGGGAGAGA
1 AGAGAGAGGGAGA-A
14802391 GAGAGGGAGAGGGAGAA
1 -AGA--GAGAGGGAGAA
*
14802408 AGAGAAAGGGAGAA
1 AGAGAGAGGGAGAA
*
14802422 AGAGAGAGAGAGGGAA
1 AGAGAGAG-G-GAGAA
* * *
14802438 GGGGAGAGGAGGAGAG
1 AGAGAGA-G-GGAGAA
*
14802454 GGAGAGAGGGAGAA
1 AGAGAGAGGGAGAA
* *
14802468 AGAGAGAGAGAAAA
1 AGAGAGAGGGAGAA
14802482 AGAGAGAG
1 AGAGAGAG
14802490 AAGGTGAAAA
Statistics
Matches: 154, Mismatches: 34, Indels: 19
0.74 0.16 0.09
Matches are distributed among these distances:
13 11 0.07
14 103 0.67
15 3 0.02
16 24 0.16
17 4 0.03
18 9 0.06
ACGTcount: A:0.44, C:0.01, G:0.55, T:0.00
Consensus pattern (14 bp):
AGAGAGAGGGAGAA
Found at i:14804985 original size:31 final size:31
Alignment explanation
Indices: 14804948--14805011 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
14804938 TAATTGCATG
14804948 GTATGATTTTTGATACGCTTACTAAGCTCTC
1 GTATGATTTTTGATACGCTTACTAAGCTCTC
14804979 GTATGATTTTTGATACGCTTACTAAGCTCTC
1 GTATGATTTTTGATACGCTTACTAAGCTCTC
14805010 GT
1 GT
14805012 GAGCTTGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (31 bp):
GTATGATTTTTGATACGCTTACTAAGCTCTC
Found at i:14805543 original size:17 final size:17
Alignment explanation
Indices: 14805521--14805553 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14805511 TTGATGAGAT
*
14805521 AAAAATAAATAAATAAG
1 AAAAATAAACAAATAAG
14805538 AAAAATAAACAAATAA
1 AAAAATAAACAAATAA
14805554 ATTAAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAATAAACAAATAAG
Done.