Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 47 of 182
Found at i:14805553 original size:21 final size:21
Alignment explanation
Indices: 14805527--14805568 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14805517 AGATAAAAAT
14805527 AAATAAA-TAAGAAAAATAAAC
1 AAATAAATTAA-AAAAATAAAC
*
14805548 AAATAAATTAAAAGAATAAAC
1 AAATAAATTAAAAAAATAAAC
14805569 CTATCGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (21 bp):
AAATAAATTAAAAAAATAAAC
Found at i:14807594 original size:46 final size:46
Alignment explanation
Indices: 14807527--14807641 Score: 212
Period size: 46 Copynumber: 2.5 Consensus size: 46
14807517 CCACACTAAT
14807527 ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
*
14807573 ATGTAGCTGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
*
14807619 TTGTAGCCGAAGCTACCACTGAT
1 ATGTAGCCGAAGCTACCACTGAT
14807642 CAATAACACT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (46 bp):
ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
Found at i:14807639 original size:23 final size:24
Alignment explanation
Indices: 14807520--14807640 Score: 180
Period size: 23 Copynumber: 5.2 Consensus size: 24
14807510 ATAAGTGCCA
14807520 CACT-AATATGTAGCCGAAGCTAC
1 CACTGAATATGTAGCCGAAGCTAC
*
14807543 CACTG-ATATGTAGCCGTAGCTAC
1 CACTGAATATGTAGCCGAAGCTAC
*
14807566 CACTGAA-ATGTAGCTGAAGCTAC
1 CACTGAATATGTAGCCGAAGCTAC
*
14807589 CACTG-ATATGTAGCCGTAGCTAC
1 CACTGAATATGTAGCCGAAGCTAC
14807612 CACTGAAT-TGTAGCCGAAGCTAC
1 CACTGAATATGTAGCCGAAGCTAC
14807635 CACTGA
1 CACTGA
14807641 TCAATAACAC
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
22 1 0.01
23 84 0.95
24 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (24 bp):
CACTGAATATGTAGCCGAAGCTAC
Found at i:14814763 original size:6 final size:6
Alignment explanation
Indices: 14814754--14814796 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
14814744 ACCTAAAAAG
* *
14814754 AAAATA AAAATA GAAATA AAAATA AATAACA AAAATTA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAAA-TA AAAAT
14814797 CATATCTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 21 0.68
7 10 0.32
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:14815138 original size:4 final size:4
Alignment explanation
Indices: 14815129--14815198 Score: 59
Period size: 4 Copynumber: 16.8 Consensus size: 4
14815119 ACGATAGTTA
* ** *
14815129 AAAT AAAT AAAG AACG AAAAT AAAT AAAT AAAT AAAT AAGAA AAAT AAAT
1 AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT
* *
14815179 AAAT GAATT AAAT TAAT AAA
1 AAAT -AAAT AAAT AAAT AAA
14815199 CCAATCAGGA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
4 45 0.85
5 8 0.15
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:14815162 original size:25 final size:25
Alignment explanation
Indices: 14815129--14815182 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
14815119 ACGATAGTTA
14815129 AAATAAATAAAGAACG-AAAATAAAT
1 AAATAAATAAAGAA-GAAAAATAAAT
*
14815154 AAATAAATAAATAAGAAAAATAAAT
1 AAATAAATAAAGAAGAAAAATAAAT
14815179 AAAT
1 AAAT
14815183 GAATTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.19
Consensus pattern (25 bp):
AAATAAATAAAGAAGAAAAATAAAT
Found at i:14815191 original size:17 final size:16
Alignment explanation
Indices: 14815146--14815198 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
14815136 TAAAGAACGA
*
14815146 AAATAAATAAATAAAT
1 AAATAAATGAATAAAT
14815162 AAAT-AA-GAA-AAAT
1 AAATAAATGAATAAAT
14815175 AAATAAATGAATTAAAT
1 AAATAAATGAA-TAAAT
*
14815192 TAATAAA
1 AAATAAA
14815199 CCAATCAGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 5 0.16
16 4 0.13
17 10 0.32
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (16 bp):
AAATAAATGAATAAAT
Found at i:14822924 original size:30 final size:31
Alignment explanation
Indices: 14822890--14823031 Score: 166
Period size: 30 Copynumber: 4.7 Consensus size: 31
14822880 CGGGAACCAT
*
14822890 AATTATAACGTCAACTTGTGTGAA-CAATTC
1 AATTATAATGTCAACTTGTGTGAAGCAATTC
* *
14822920 AATTATAATGTCAACTTATTTG-AGCAATTC
1 AATTATAATGTCAACTTGTGTGAAGCAATTC
* * *
14822950 AATTATAATGTCAGCTTGT-TTAAGCAATCC
1 AATTATAATGTCAACTTGTGTGAAGCAATTC
***
14822980 AATTATAATGTTGGCTTGTGT-AAGCAATTC
1 AATTATAATGTCAACTTGTGTGAAGCAATTC
*
14823010 AATTATAATGCCAACTTGTGTG
1 AATTATAATGTCAACTTGTGTG
14823032 GGCAACTATA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
29 2 0.02
30 91 0.97
31 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (31 bp):
AATTATAATGTCAACTTGTGTGAAGCAATTC
Found at i:14823677 original size:20 final size:21
Alignment explanation
Indices: 14823638--14823677 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14823628 TTTGAGATGT
*
14823638 GTATGTGGAAATTTAATTGGC
1 GTATGTGGAAATTGAATTGGC
*
14823659 GTATTTGGAAA-TGAATTGG
1 GTATGTGGAAATTGAATTGG
14823678 TTTTGACAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.38
Consensus pattern (21 bp):
GTATGTGGAAATTGAATTGGC
Found at i:14825649 original size:43 final size:42
Alignment explanation
Indices: 14825583--14825725 Score: 141
Period size: 43 Copynumber: 3.3 Consensus size: 42
14825573 AGCTCGTACA
*
14825583 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATAATG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGTAATCAAAT-ACG
** *
14825626 ATGCCACTGTCCCAGACAGGGTCTTACACATAATCATATACG
1 ATGCCACTGTCCCAGACAGGGTCTTACATGTAATCAAATACG
* *
14825668 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCTGAAAT-CG
1 ATGCCACTGTCCCAGACAGGGTCTTACATGT-AATC--AAATACG
14825712 ATGCCA-TCGTCCCA
1 ATGCCACT-GTCCCA
14825726 TACGTGGTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
42 31 0.36
43 36 0.42
44 15 0.18
45 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAGGGTCTTACATGTAATCAAATACG
Found at i:14828521 original size:30 final size:30
Alignment explanation
Indices: 14828487--14828583 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
14828477 AGCTCACTCC
14828487 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
14828517 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
14828547 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
14828577 TAGCTCA
1 TAGCTCA
14828584 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:14832517 original size:30 final size:30
Alignment explanation
Indices: 14832483--14832579 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
14832473 AGCTCACTCC
14832483 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
14832513 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
14832543 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
14832573 TAGCTCA
1 TAGCTCA
14832580 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:14837905 original size:2 final size:2
Alignment explanation
Indices: 14837898--14838655 Score: 1516
Period size: 2 Copynumber: 379.0 Consensus size: 2
14837888 ACTGGTTTTC
14837898 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14837940 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14837982 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838024 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838066 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838108 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838150 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838192 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838234 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838276 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838318 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838360 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838402 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838444 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838486 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838528 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838570 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838612 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14838654 CT
1 CT
14838656 TTTCACTATG
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 756 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14840458 original size:22 final size:22
Alignment explanation
Indices: 14840431--14840474 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14840421 TTTTATGCTT
*
14840431 CAAAAACCTGTCACAAAACTCAA
1 CAAAAGCC-GTCACAAAACTCAA
*
14840454 CAAAAGCCGTCTCAAAACTCA
1 CAAAAGCCGTCACAAAACTCA
14840475 CACTTAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.48, C:0.32, G:0.07, T:0.14
Consensus pattern (22 bp):
CAAAAGCCGTCACAAAACTCAA
Found at i:14848999 original size:24 final size:24
Alignment explanation
Indices: 14848972--14849020 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14848962 AAATATTTAA
14848972 ACAGGTTGTTCAGGAGATAACTAC
1 ACAGGTTGTTCAGGAGATAACTAC
14848996 ACAGGTTGTTCAGGAGATAACTAC
1 ACAGGTTGTTCAGGAGATAACTAC
14849020 A
1 A
14849021 AATAAATAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (24 bp):
ACAGGTTGTTCAGGAGATAACTAC
Found at i:14859472 original size:36 final size:36
Alignment explanation
Indices: 14859425--14859496 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
14859415 AGATATTGCT
14859425 GAATATATTGTGCACACACAGTACTATCACTCTTTC
1 GAATATATTGTGCACACACAGTACTATCACTCTTTC
*
14859461 GAATATATTGTGCACACACAGTACTATCGCTCTTTC
1 GAATATATTGTGCACACACAGTACTATCACTCTTTC
14859497 CTGATATAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (36 bp):
GAATATATTGTGCACACACAGTACTATCACTCTTTC
Found at i:14864773 original size:17 final size:19
Alignment explanation
Indices: 14864747--14864793 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
14864737 ATAAAATTAT
*
14864747 ATAATATTAATAA-AAA-A
1 ATAATTTTAATAATAAATA
14864764 ATAATTTTAAATAATAAATA
1 ATAATTTT-AATAATAAATA
14864784 AGTAATTTTA
1 A-TAATTTTA
14864794 CAATATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 3 0.12
20 3 0.12
21 7 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
ATAATTTTAATAATAAATA
Found at i:14864778 original size:21 final size:22
Alignment explanation
Indices: 14864754--14864805 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
14864744 TATATAATAT
14864754 TAATAAAAAAATAATTTTA-AA
1 TAATAAAAAAATAATTTTACAA
* *
14864775 TAATAAATAAGTAATTTTACAA
1 TAATAAAAAAATAATTTTACAA
*
14864797 TATTAAAAA
1 TAATAAAAA
14864806 TATATATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
TAATAAAAAAATAATTTTACAA
Found at i:14867473 original size:28 final size:25
Alignment explanation
Indices: 14867435--14867485 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
14867425 TTTAGGGACT
14867435 AAATTGAATAAAATGTAAAACTTTAGGG
1 AAATTGAAT-AAAT-TAAAA-TTTAGGG
*
14867463 AAATTGTATAAATTAAAATTTAG
1 AAATTGAATAAATTAAAATTTAG
14867486 TTGTCATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 5 0.23
27 4 0.18
28 8 0.36
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (25 bp):
AAATTGAATAAATTAAAATTTAGGG
Found at i:14867901 original size:22 final size:21
Alignment explanation
Indices: 14867866--14867974 Score: 85
Period size: 22 Copynumber: 5.0 Consensus size: 21
14867856 TTTACATAAT
* *
14867866 TTGCACTACAGTGCCTACTGC
1 TTGCACTTCGGTGCCTACTGC
*
14867887 TCTGCACTTCGGTGCCTATTGC
1 T-TGCACTTCGGTGCCTACTGC
* **
14867909 TTTGCACTTCGGTACCTACTAA
1 -TTGCACTTCGGTGCCTACTGC
* *
14867931 TTCGCACTTCTGTGCCTACT-A
1 TT-GCACTTCGGTGCCTACTGC
14867952 TTAAAGCACTTCGGTGCCTACTG
1 TT---GCACTTCGGTGCCTACTG
14867975 GTGTGGTTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
21 6 0.08
22 48 0.68
23 17 0.24
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.34
Consensus pattern (21 bp):
TTGCACTTCGGTGCCTACTGC
Found at i:14873799 original size:23 final size:23
Alignment explanation
Indices: 14873761--14873811 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14873751 ATATTCTAAG
* *
14873761 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
14873784 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
14873807 AGTAA
1 TGTAA
14873812 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:14884929 original size:22 final size:23
Alignment explanation
Indices: 14884904--14884946 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14884894 CTATCTACAA
14884904 ATCAAATC-TCTAAGATTACATT
1 ATCAAATCTTCTAAGATTACATT
*
14884926 ATCATATCTTCTAAGATTACA
1 ATCAAATCTTCTAAGATTACA
14884947 AGTTATCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
ATCAAATCTTCTAAGATTACATT
Found at i:14887005 original size:49 final size:49
Alignment explanation
Indices: 14886919--14887125 Score: 267
Period size: 49 Copynumber: 4.2 Consensus size: 49
14886909 TATAACATTG
* * *
14886919 ATACTGCCATTGATAACACTTTTGTGGACAAGACACCACTGATATGCAGAT
1 ATACTGCCATTGATAA-A-TTTTGTAGACAAGCCACCACTGATTTGCAGAT
*
14886970 ATACTGCCATTGATAAATTTTGTGGACAAGCCACCACTGATTTGCAGAT
1 ATACTGCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGAT
* * *
14887019 ATATTACCATTGATAAATTTTGTAGACAAGCCACCACTGATTTACAGAT
1 ATACTGCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGAT
* *
14887068 ATACTGCCACTGATAAATTGTT-TAGACAAGCCA-TATCTGATTTAG-AGAT
1 ATACTGCCATTGATAAATT-TTGTAGACAAGCCACCA-CTGATTT-GCAGAT
14887117 ATACTGCCA
1 ATACTGCCA
14887126 CTGCTTCCAC
Statistics
Matches: 142, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
48 1 0.01
49 122 0.86
50 3 0.02
51 16 0.11
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (49 bp):
ATACTGCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGAT
Found at i:14893138 original size:22 final size:23
Alignment explanation
Indices: 14893113--14893155 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14893103 CTATCTACAA
14893113 ATCAAATC-TCTAAGATTACATT
1 ATCAAATCTTCTAAGATTACATT
*
14893135 ATCATATCTTCTAAGATTACA
1 ATCAAATCTTCTAAGATTACA
14893156 AGTTATCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
ATCAAATCTTCTAAGATTACATT
Found at i:14895208 original size:19 final size:19
Alignment explanation
Indices: 14895184--14895221 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14895174 AAATTTAATA
14895184 ACAAATTTGATTACAGTGG
1 ACAAATTTGATTACAGTGG
14895203 ACAAATTTGATTACAGTGG
1 ACAAATTTGATTACAGTGG
14895222 GTGATAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
ACAAATTTGATTACAGTGG
Found at i:14897617 original size:72 final size:72
Alignment explanation
Indices: 14897505--14897642 Score: 240
Period size: 72 Copynumber: 1.9 Consensus size: 72
14897495 CAAATAGTAG
* *
14897505 ATATAAATAAAATTATTACTATTTATATTTAGTGATTTTTTTTTGGATAATTTTGATTTTTTATT
1 ATATAAATAAAATTATAACTATTTATATTTAGTGAATTTTTTTTGGATAATTTTGATTTTTTATT
14897570 TAAGAGT
66 TAAGAGT
* *
14897577 ATATAAATAAAATTATAACTATTTATGTTTAGTGAATTTTTTTTGTATAATTTTGATTTTTTATT
1 ATATAAATAAAATTATAACTATTTATATTTAGTGAATTTTTTTTGGATAATTTTGATTTTTTATT
14897642 T
66 T
14897643 GAGGGTAAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.33, C:0.01, G:0.09, T:0.57
Consensus pattern (72 bp):
ATATAAATAAAATTATAACTATTTATATTTAGTGAATTTTTTTTGGATAATTTTGATTTTTTATT
TAAGAGT
Found at i:14897877 original size:23 final size:23
Alignment explanation
Indices: 14897845--14897888 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
14897835 GGAGTAAAAA
14897845 TTTTGAGAGAAAATAAAAGGTAG
1 TTTTGAGAGAAAATAAAAGGTAG
*
14897868 TTTTGGGAGAAAATAAAAGGT
1 TTTTGAGAGAAAATAAAAGGT
14897889 TTTGAGGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (23 bp):
TTTTGAGAGAAAATAAAAGGTAG
Found at i:14898107 original size:9 final size:9
Alignment explanation
Indices: 14898093--14898129 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14898083 TATAGTTTGA
14898093 TATTCGAAT
1 TATTCGAAT
14898102 TATTCGAAT
1 TATTCGAAT
*
14898111 TATTCGAGT
1 TATTCGAAT
14898120 TATTCGAAT
1 TATTCGAAT
14898129 T
1 T
14898130 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14905228 original size:27 final size:27
Alignment explanation
Indices: 14905201--14905302 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 27
14905191 CAGTCTATTT
* *
14905201 AGAGTTTGCCACAAAGGTTATTCTTTT
1 AGAGTTCGCCACAAAGGTTATTCTTTC
* * *
14905228 AGAGTTCACCATAAAGCTTATTCTTTC
1 AGAGTTCGCCACAAAGGTTATTCTTTC
* * * * *
14905255 AGGGTTCGCCATAAAAGCTATCCTTTC
1 AGAGTTCGCCACAAAGGTTATTCTTTC
* *
14905282 AGATTTCGGCACAAAGGTTAT
1 AGAGTTCGCCACAAAGGTTAT
14905303 CAAAATGCCA
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
AGAGTTCGCCACAAAGGTTATTCTTTC
Found at i:14908304 original size:25 final size:23
Alignment explanation
Indices: 14908276--14908335 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 23
14908266 TATGGTCATA
*
14908276 TTTTGTTGCTATTTTGGTTGATAGT
1 TTTTGTTGCTACTTT-GTTGATA-T
*
14908301 TTTTTTTGACTACTTTGTTGATAT
1 TTTTGTTG-CTACTTTGTTGATAT
14908325 TTTTGTTGCTA
1 TTTTGTTGCTA
14908336 GTTATTGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 3 0.10
24 8 0.26
25 14 0.45
26 6 0.19
ACGTcount: A:0.13, C:0.07, G:0.18, T:0.62
Consensus pattern (23 bp):
TTTTGTTGCTACTTTGTTGATAT
Found at i:14908329 original size:12 final size:12
Alignment explanation
Indices: 14908276--14908332 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
14908266 TATGGTCATA
*
14908276 TTTTGTTGCTAT
1 TTTTGTTGATAT
*
14908288 TTTGGTTGATAGT
1 TTTTGTTGATA-T
*
14908301 TTTTTTTGACTA-
1 TTTTGTTGA-TAT
*
14908313 CTTTGTTGATAT
1 TTTTGTTGATAT
14908325 TTTTGTTG
1 TTTTGTTG
14908333 CTAGTTATTG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
11 2 0.06
12 23 0.66
13 8 0.23
14 2 0.06
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.63
Consensus pattern (12 bp):
TTTTGTTGATAT
Found at i:14910599 original size:44 final size:45
Alignment explanation
Indices: 14910454--14910614 Score: 147
Period size: 44 Copynumber: 3.6 Consensus size: 45
14910444 TTTTAATCCA
* * * ** *
14910454 TCCACTGCAACTTTAGCGAGAT-AGAATTGTCGGTTTT-AATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CCATTTTCAGTCTGC
* *
14910498 TCCACTGCAACTTCAGGGAAATAAGATTTGCCATTTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCCATTTTCAGTCTGC
*
14910543 AT-CGCTGCAACTTCA-GGAGGATAAGACTTG-C-TTAATT-AGTCTGC
1 -TCCACTGCAACTTCAGGGA-GATAAGACTTGCCATT--TTCAGTCTGC
14910587 TCCACTGCAACTTCAGGGAGATAAGACT
1 TCCACTGCAACTTCAGGGAGATAAGACT
14910615 AGATGTGATC
Statistics
Matches: 98, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
43 3 0.03
44 56 0.57
45 38 0.39
46 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGCCATTTTCAGTCTGC
Found at i:14910746 original size:44 final size:45
Alignment explanation
Indices: 14910642--14910757 Score: 150
Period size: 45 Copynumber: 2.6 Consensus size: 45
14910632 GGCTTTAATT
*
14910642 TGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCATCTTCAGTC
*
14910687 TGC-CTCACTGCAACTTCA-GGAGGATAAAACTTG-CTTACTT-AGTC
1 TGCTC-CACTGCAACTTCAGGGA-GATAAAACTTGCCAT-CTTCAGTC
*
14910731 TGCTCCACTGCAACTTCAGGGAAATAA
1 TGCTCCACTGCAACTTCAGGGAGATAA
14910758 GACTAGATGC
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
44 30 0.48
45 33 0.52
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCATCTTCAGTC
Found at i:14910758 original size:147 final size:147
Alignment explanation
Indices: 14910488--14910766 Score: 477
Period size: 147 Copynumber: 1.9 Consensus size: 147
14910478 AATTGTCGGT
* * *
14910488 TTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCCATTTTCAGTCTGCATCGCTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAAATAAAATTTGCCATCTTCAGTCTGCATCACTGCAA
* *
14910553 CTTCAGGAGGATAAGACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGA
66 CTTCAGGAGGATAAAACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGA
14910618 TGTGATCTACTCTTGGC
131 TGTGATCTACTCTTGGC
* * *
14910635 TTTAATTTGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAAATAAAATTTGCCATCTTCAGTCTGCATCACTGCAA
*
14910700 CTTCAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGA
66 CTTCAGGAGGATAAAACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGA
14910765 TG
131 TG
14910767 CGGTCTGTTC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
147 123 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (147 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAAATAAAATTTGCCATCTTCAGTCTGCATCACTGCAA
CTTCAGGAGGATAAAACTTGCTTAATTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGA
TGTGATCTACTCTTGGC
Found at i:14910829 original size:44 final size:44
Alignment explanation
Indices: 14910778--14910889 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 44
14910768 GGTCTGTTCT
**
14910778 CTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTAATCTGCTACA
1 CTGCAACTTCAGAGAGATAAGAT-TATAGACTTTAATCTGCTACA
* * *
14910822 CTGCAACTTCA-AGGAGATAGGATTATCGACTTTAATCTGCTCCA
1 CTGCAACTTCAGA-GAGATAAGATTATAGACTTTAATCTGCTACA
* * *
14910866 CTGTAACTTCAGGGAGACAAGATT
1 CTGCAACTTCAGAGAGATAAGATT
14910890 TGACATCATC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
43 3 0.05
44 53 0.95
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATTATAGACTTTAATCTGCTACA
Found at i:14924984 original size:22 final size:21
Alignment explanation
Indices: 14924954--14925011 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
14924944 AACCAAGTTT
14924954 GGGACTTGTATTGGTACCCAA
1 GGGACTTGTATTGGTACCCAA
* * *
14924975 GGGGAATTGTATT-AT-CCTAA
1 -GGGACTTGTATTGGTACCCAA
14924995 GGGACTTGTATTGGTAC
1 GGGACTTGTATTGGTAC
14925012 GACGGCCAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.38
20 5 0.17
21 2 0.07
22 11 0.38
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (21 bp):
GGGACTTGTATTGGTACCCAA
Found at i:14931797 original size:44 final size:43
Alignment explanation
Indices: 14931730--14931884 Score: 125
Period size: 42 Copynumber: 3.6 Consensus size: 43
14931720 TGACATTGTG
** ** * * *
14931730 TAAGACCACATCTGGGATGTTGGCCTCGATTTGATATTTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATAT-ATAATTACGTA
*
14931774 TAAGACCATGTCTGGGACATTGGCATCG-TATATAATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATAATTACGTA
* * * * *
14931816 TAAGATCC-TGTCTGGGACAATGGCGTCGATATGTAATTACATG
1 TAAGA-CCATGTCTGGGACATTGGCATCGATATATAATTACGTA
* * * *
14931859 TAAGACCACGTCCGAGACGTTGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
14931885 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 34 0.38
43 33 0.37
44 23 0.26
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATATAATTACGTA
Found at i:14931828 original size:42 final size:43
Alignment explanation
Indices: 14931767--14931866 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
14931757 GATTTGATAT
* *
14931767 TTACGTATAAGACCATGTCTGGGACATTGGCATCG-TATATAA
1 TTACGTGTAAGACCATGTCTGGGACAATGGCATCGATATATAA
* *
14931809 TTACGTGTAAGATCC-TGTCTGGGACAATGGCGTCGATATGTAA
1 TTACGTGTAAGA-CCATGTCTGGGACAATGGCATCGATATATAA
*
14931852 TTACATGTAAGACCA
1 TTACGTGTAAGACCA
14931867 CGTCCGAGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACAATGGCATCGATATATAA
Found at i:14937561 original size:24 final size:24
Alignment explanation
Indices: 14937504--14937585 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
14937494 CTCCAATGTG
* *
14937504 GACGAAGCCACCA-AT-ATTTGCA
1 GACGAAGCCACCATATAAGTTGTA
* * *
14937526 AAC-AAGCCACCATATAGGTTGTT
1 GACGAAGCCACCATATAAGTTGTA
*
14937549 GACGAAGCCACCATGTAAGTTGTA
1 GACGAAGCCACCATATAAGTTGTA
* *
14937573 GATGAAACCACCA
1 GACGAAGCCACCA
14937586 ACTCTTTCTC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 9 0.20
22 4 0.09
23 5 0.11
24 28 0.61
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (24 bp):
GACGAAGCCACCATATAAGTTGTA
Found at i:14942035 original size:22 final size:21
Alignment explanation
Indices: 14941964--14942033 Score: 97
Period size: 22 Copynumber: 3.3 Consensus size: 21
14941954 GGGGGTCAAC
14941964 ACGCCCATGTGGAAG-GGCAT
1 ACGCCCATGTGGAAGAGGCAT
*
14941984 ACGCCCATGTGGAAGAAGGCAC
1 ACGCCCATGTGGAAG-AGGCAT
*
14942006 ACGCCCGTGTGGAATGAGGCAT
1 ACGCCCATGTGGAA-GAGGCAT
14942028 ACGCCC
1 ACGCCC
14942034 GTATAACCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 15 0.34
22 28 0.64
23 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.33, T:0.13
Consensus pattern (21 bp):
ACGCCCATGTGGAAGAGGCAT
Found at i:14943659 original size:26 final size:26
Alignment explanation
Indices: 14943630--14943692 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
14943620 TTGGTCATTT
*
14943630 TTTTAATTTTTTAT-TTAATCTTTATA
1 TTTTAATTTTTTATCATAAT-TTTATA
14943656 TTTTAATTTTTTATCATAATTTTATA
1 TTTTAATTTTTTATCATAATTTTATA
*
14943682 TTTTTATTTTT
1 TTTTAATTTTT
14943693 ATAATATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 30 0.88
27 4 0.12
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTAATTTTTTATCATAATTTTATA
Found at i:14943690 original size:13 final size:13
Alignment explanation
Indices: 14943630--14943691 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
14943620 TTGGTCATTT
*
14943630 TTTTAATTTTTTA
1 TTTTAATTTTATA
14943643 -TTTAATCTTTATA
1 TTTTAAT-TTTATA
*
14943656 TTTTAATTTTTTA
1 TTTTAATTTTATA
**
14943669 TCATAATTTTATA
1 TTTTAATTTTATA
*
14943682 TTTTTATTTT
1 TTTTAATTTT
14943692 TATAATATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 6 0.15
13 27 0.69
14 6 0.15
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTAATTTTATA
Found at i:14948306 original size:29 final size:30
Alignment explanation
Indices: 14948274--14948332 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
14948264 TATGATTTAA
*
14948274 TGTGCAATTGTATATAT-AAATTTTAATTT
1 TGTGCAATTGTATACATGAAATTTTAATTT
* * *
14948303 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAATTTTAATTT
14948333 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAATTTTAATTT
Found at i:14948333 original size:29 final size:29
Alignment explanation
Indices: 14948252--14948332 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 29
14948242 AATTTTAAAA
*
14948252 TTATACATAAATTATGATTTAATGTGCAATT
1 TTATACATAAATTTTGATTT--TGTGCAATT
* * * *
14948283 GTATATATAAATTTTAATTTTGTGTAATT
1 TTATACATAAATTTTGATTTTGTGCAATT
14948312 TTATACATGAAATTTTGATTT
1 TTATACAT-AAATTTTGATTT
14948333 GATCCAATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 14 0.34
30 11 0.27
31 16 0.39
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.51
Consensus pattern (29 bp):
TTATACATAAATTTTGATTTTGTGCAATT
Found at i:14958452 original size:40 final size:40
Alignment explanation
Indices: 14958368--14958470 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 40
14958358 GGAAAAAATG
* * ** * **
14958368 CCGCTATAGATCGAGCT-TTAGTGGCGCTTTTTGGAAAATG
1 CCGCTATAGATCGA-CTATTAGCGACGCTACTTGAAAAACA
14958408 CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
1 CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
* * *
14958448 CCGCTATAGGTAGACAATTAGCG
1 CCGCTATAGATCGACTATTAGCG
14958471 GCACTTTCTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.04
40 50 0.96
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
Found at i:14958596 original size:40 final size:39
Alignment explanation
Indices: 14958538--14958646 Score: 141
Period size: 40 Copynumber: 2.7 Consensus size: 39
14958528 GCTTTAGTGG
* *
14958538 CATTAGCGACGCTTTTTGAAAAACACCGCTA-ATGGTCGA-
1 CATTAGCGGCGC-TTTTGAAAAACGCCGCTACA-GGTCGAC
14958577 CATTTAGCGGCGCTCTTTGAAAAACGCCGCTACAGGTCGAC
1 CA-TTAGCGGCGCT-TTTGAAAAACGCCGCTACAGGTCGAC
14958618 CATTAGCGGCGCTTTTGGAAAAACGCCGC
1 CATTAGCGGCGCTTTT-GAAAAACGCCGC
14958647 AAAAGACGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
39 6 0.10
40 54 0.86
41 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CATTAGCGGCGCTTTTGAAAAACGCCGCTACAGGTCGAC
Found at i:14958971 original size:7 final size:7
Alignment explanation
Indices: 14958950--14959138 Score: 89
Period size: 7 Copynumber: 26.4 Consensus size: 7
14958940 TTAATTATCA
*
14958950 TTATAGT
1 TTATGGT
*
14958957 TTAGGGT
1 TTATGGT
14958964 TTATGGT
1 TTATGGT
*
14958971 TTAGGGT
1 TTATGGT
* **
14958978 ATACAGT
1 TTATGGT
*
14958985 TTAGGGT
1 TTATGGT
*
14958992 TTAGGGT
1 TTATGGT
*
14958999 TTAGGAGT
1 TTATG-GT
14959007 TACTAT--T
1 T--TATGGT
*
14959014 TTAAGGT
1 TTATGGT
*
14959021 TTATGGA
1 TTATGGT
14959028 TTATGGGT
1 TTAT-GGT
* *
14959036 TTAGGGA
1 TTATGGT
*
14959043 TAATGGT
1 TTATGGT
14959050 TTATGGT
1 TTATGGT
*
14959057 TTAGGGT
1 TTATGGT
*
14959064 TTAGGGT
1 TTATGGT
*
14959071 TTAAGAGT
1 TTATG-GT
14959079 TAGTAT--T
1 T--TATGGT
*
14959086 TTAAGGT
1 TTATGGT
*
14959093 TTATGGG
1 TTATGGT
14959100 TTATGGGT
1 TTAT-GGT
* *
14959108 TTAGGGA
1 TTATGGT
14959115 TTATGGT
1 TTATGGT
14959122 TTATGGT
1 TTATGGT
14959129 TTATGGT
1 TTATGGT
14959136 TTA
1 TTA
14959139 AGGGTTGGGG
Statistics
Matches: 138, Mismatches: 32, Indels: 24
0.71 0.16 0.12
Matches are distributed among these distances:
5 4 0.03
7 114 0.83
8 16 0.12
10 4 0.03
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:14958972 original size:14 final size:14
Alignment explanation
Indices: 14958950--14959188 Score: 117
Period size: 14 Copynumber: 16.7 Consensus size: 14
14958940 TTAATTATCA
*
14958950 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
14958964 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* **
14958978 ATACAGTTTAGGGT
1 TTATGGTTTAGGGT
*
14958992 TTAGGGTTTAGGAGT
1 TTATGGTTTAGG-GT
*
14959007 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
14959021 TTATGGATTATGGGT
1 TTATGGTTTA-GGGT
* * * *
14959036 TTAGGGATAATGGT
1 TTATGGTTTAGGGT
14959050 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
14959064 TTAGGGTTTAAGAGT
1 TTATGGTTT-AGGGT
*
14959079 TAGTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
14959093 TTATGGGTTATGGGT
1 TTATGGTTTA-GGGT
* * *
14959108 TTAGGGATTATGGT
1 TTATGGTTTAGGGT
*
14959122 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* * *
14959136 TTAAGGGTTGGGGT
1 TTATGGTTTAGGGT
* * *
14959150 TTAAGTTTTAAGGT
1 TTATGGTTTAGGGT
* *
14959164 TTAGGGGTTAGGGGT
1 TTATGGTTTA-GGGT
*
14959179 TTAAGGTTTA
1 TTATGGTTTA
14959189 TATTTTATGA
Statistics
Matches: 168, Mismatches: 44, Indels: 25
0.71 0.19 0.11
Matches are distributed among these distances:
12 6 0.04
14 109 0.65
15 49 0.29
17 4 0.02
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:14959079 original size:72 final size:72
Alignment explanation
Indices: 14958983--14959144 Score: 270
Period size: 72 Copynumber: 2.2 Consensus size: 72
14958973 AGGGTATACA
*
14958983 GTTTAGGGTTTAGGGTTTAGGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
1 GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
14959048 GTTTATG
66 GTTTATG
* * *
14959055 GTTTAGGGTTTAGGGTTTAAGAGTTAGTATTTTAAGGTTTATGGGTTATGGGTTTAGGGATTATG
1 GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
14959120 GTTTATG
66 GTTTATG
*
14959127 GTTTATGGTTTAAGGGTT
1 GTTTAGGGTTT-AGGGTT
14959145 GGGGTTTAAG
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 78 0.93
73 6 0.07
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.46
Consensus pattern (72 bp):
GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
GTTTATG
Found at i:14959161 original size:7 final size:7
Alignment explanation
Indices: 14959085--14959188 Score: 55
Period size: 7 Copynumber: 14.6 Consensus size: 7
14959075 GAGTTAGTAT
14959085 TTTAAGG
1 TTTAAGG
*
14959092 TTTATGG
1 TTTAAGG
* *
14959099 GTTATGGG
1 TTTA-AGG
*
14959107 TTTAGGG
1 TTTAAGG
* *
14959114 ATTATGG
1 TTTAAGG
*
14959121 TTTATGG
1 TTTAAGG
*
14959128 TTTATGG
1 TTTAAGG
14959135 TTTAAGG
1 TTTAAGG
* **
14959142 GTTGGGG
1 TTTAAGG
*
14959149 TTTAAGT
1 TTTAAGG
14959156 TTTAAGG
1 TTTAAGG
*
14959163 TTTAGGG
1 TTTAAGG
* *
14959170 GTTAGGGG
1 TTTA-AGG
14959178 TTTAAGG
1 TTTAAGG
14959185 TTTA
1 TTTA
14959189 TATTTTATGA
Statistics
Matches: 75, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
7 64 0.85
8 11 0.15
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
TTTAAGG
Found at i:14960673 original size:20 final size:20
Alignment explanation
Indices: 14960636--14960674 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14960626 AAAAATGGAT
* *
14960636 ATGGGTGTTCATGGTTGTTC
1 ATGGCTGTTCATAGTTGTTC
*
14960656 ATGGCTGTTCATATTTGTT
1 ATGGCTGTTCATAGTTGTT
14960675 TCCATAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.28, T:0.49
Consensus pattern (20 bp):
ATGGCTGTTCATAGTTGTTC
Found at i:14965365 original size:43 final size:43
Alignment explanation
Indices: 14965313--14965708 Score: 541
Period size: 43 Copynumber: 9.3 Consensus size: 43
14965303 GAACGGTACT
* * *
14965313 TTTAGCGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
14965356 TTTAACGGCGTTTGTGCTAAAAGCGCCGTTAAAGGTCATGTTT
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* **
14965399 TTTAGCGGCGTTTGTGATAAAAGTGTTGCTAAA-G--ATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
14965439 TTTAGCGGCGTTTGTGATAAAA-AGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
14965481 TTTAGCAGCGTTTGTGCTAAAAGCACCACTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
14965524 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTG
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* *
14965567 TTTAGCGGCGTTTGTAATAAAAGCGCCACTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
14965610 TTTAGCGGTGTTTGTGATGAAAA-CGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAT-AAAAGCGCCGCTAAAGGTCATGTTC
* * * *
14965653 TTTAGCGACGATTGTGACAAAAGTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
14965696 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
14965709 ATGTGAAAAA
Statistics
Matches: 308, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
39 7 0.02
40 28 0.09
42 31 0.10
43 238 0.77
44 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:14976385 original size:28 final size:28
Alignment explanation
Indices: 14976345--14976401 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
14976335 ACATCTGACC
*
14976345 AATTTCTTTCTTTTGGGAAATTCAACTA
1 AATTTCTTCCTTTTGGGAAATTCAACTA
14976373 AATTTCTTCCTTTTGGGAAATTCAACTA
1 AATTTCTTCCTTTTGGGAAATTCAACTA
14976401 A
1 A
14976402 CTCTCATGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44
Consensus pattern (28 bp):
AATTTCTTCCTTTTGGGAAATTCAACTA
Found at i:14976612 original size:16 final size:16
Alignment explanation
Indices: 14976591--14976629 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
14976581 GTTTGGTTCA
14976591 CTGTAATGGAAAAGAG
1 CTGTAATGGAAAAGAG
*
14976607 CTGTAATGGAATAGAG
1 CTGTAATGGAAAAGAG
14976623 CTGTAAT
1 CTGTAAT
14976630 AGTAATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (16 bp):
CTGTAATGGAAAAGAG
Found at i:14976663 original size:45 final size:44
Alignment explanation
Indices: 14976612--14976699 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
14976602 AAGAGCTGTA
*
14976612 ATGGAATAGAGCTGTAATAGTAATTCAAT-TGTTTGGTTGAATGGG
1 ATGGAATAGAGCTATAATAGT-ATT-AATGTGTTTGGTTGAATGGG
*
14976657 ATGGAATAGAGCTATAATAGTATTATTGTGTTTGGTTGAATGG
1 ATGGAATAGAGCTATAATAGTATTAATGTGTTTGGTTGAATGG
14976700 AATGATATTG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
43 2 0.05
44 18 0.45
45 20 0.50
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (44 bp):
ATGGAATAGAGCTATAATAGTATTAATGTGTTTGGTTGAATGGG
Found at i:14976928 original size:57 final size:56
Alignment explanation
Indices: 14976812--14976945 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 56
14976802 AATAAGATTA
* * *
14976812 TTAATAAAAATAATAAATAATTTAATCATATTTTAACATAATTAGTATTAAATATAAT
1 TTAAT-AAAATAATATATAATTTAATAAAATTTTAACATAATTAGTATT-AATATAAT
* * *
14976870 TTAATAAAATAATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATATATAATTTAATAAAATT-TTAACATAATTAGTATTAATAT-AAT
* *
14976927 TTACTAAAATCATAATATA
1 TTAATAAAATAAT-ATATA
14976946 TAATACTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
56 4 0.06
57 37 0.57
58 24 0.37
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATATATAATTTAATAAAATTTTAACATAATTAGTATTAATATAAT
Found at i:14977564 original size:46 final size:46
Alignment explanation
Indices: 14977514--14977604 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
14977504 TTTTGTAGTG
* *
14977514 TTAATTATAATTTTTAATCAAACAATATATGTAATATAAAATATTT
1 TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATTT
*
14977560 TTAATTATAATTTTCAATCATACAATATAAGTAATATAAAATATT
1 TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATT
14977605 GTTTGAAGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (46 bp):
TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATTT
Found at i:14978820 original size:31 final size:32
Alignment explanation
Indices: 14978761--14978888 Score: 215
Period size: 32 Copynumber: 4.1 Consensus size: 32
14978751 GGCAAATTAC
14978761 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
*
14978793 AAGAGTAATTGAATCCTAAT-AAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
*
14978824 AAGAGTAATTGAATCCTACTAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
*
14978856 AAGAGTGATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
14978887 AA
1 AA
14978889 ATTATCTAAG
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 42 0.47
32 48 0.53
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:14978859 original size:63 final size:63
Alignment explanation
Indices: 14978760--14978885 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
14978750 AGGCAAATTA
14978760 CAAGAGTAATTGAATCCTAATAAAAACTCTTTAAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTTAAAGAGTAATTGAATCCTAATAAAACTCTTT
* *
14978823 CAAGAGTAATTGAATCCTACTAAAAACTCTTTAAAGAGTGATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTTAAAGAGTAATTGAATCCTAATAAAACTCTTT
14978886 AAAATTATCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (63 bp):
CAAGAGTAATTGAATCCTAATAAAAACTCTTTAAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:14984485 original size:42 final size:43
Alignment explanation
Indices: 14984414--14984530 Score: 209
Period size: 43 Copynumber: 2.7 Consensus size: 43
14984404 GAGAGGTAGG
*
14984414 CAACTTTTTTTTTGCGCTGTTTACTTTTTTTTCAGATTTTTCT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
*
14984457 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTTAGATTTTTCT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
14984500 CAAC-TTTTTTTTGCGCTGTTTGCTTTTTTTT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTT
14984531 ATTAACTAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 27 0.38
43 45 0.62
ACGTcount: A:0.09, C:0.15, G:0.11, T:0.64
Consensus pattern (43 bp):
CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
Found at i:14984976 original size:58 final size:58
Alignment explanation
Indices: 14984886--14985006 Score: 208
Period size: 58 Copynumber: 2.1 Consensus size: 58
14984876 GAATATTTGT
*
14984886 AACTCCGAAATACCCTCAAAAAGTAACAAACTCCAAACTAAATAGCAAGAGAAGAATC
1 AACTCTGAAATACCCTCAAAAAGTAACAAACTCCAAACTAAATAGCAAGAGAAGAATC
* *
14984944 AACTCTGAAATTCCCTCGAAAAGTAACAAACTCCAAACTAAATAGCAAGAGAAGAATC
1 AACTCTGAAATACCCTCAAAAAGTAACAAACTCCAAACTAAATAGCAAGAGAAGAATC
14985002 -ACTCT
1 AACTCT
14985007 ACTCTAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
57 5 0.08
58 55 0.92
ACGTcount: A:0.49, C:0.24, G:0.11, T:0.17
Consensus pattern (58 bp):
AACTCTGAAATACCCTCAAAAAGTAACAAACTCCAAACTAAATAGCAAGAGAAGAATC
Found at i:14985171 original size:31 final size:32
Alignment explanation
Indices: 14985112--14985176 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
14985102 GGCAAATTAC
14985112 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
14985144 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
14985175 AA
1 AA
14985177 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:14985800 original size:13 final size:13
Alignment explanation
Indices: 14985782--14985812 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
14985772 AGAAATATAG
14985782 CAGAATATTTTAT
1 CAGAATATTTTAT
14985795 CAGAATATTTTAT
1 CAGAATATTTTAT
14985808 CAGAA
1 CAGAA
14985813 CATCTGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (13 bp):
CAGAATATTTTAT
Found at i:14990004 original size:13 final size:13
Alignment explanation
Indices: 14989986--14990024 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
14989976 ATGAAAAAGA
14989986 AAGAAAAATAAAT
1 AAGAAAAATAAAT
*
14989999 AAGAAAAAGAAAAT
1 AAGAAAAA-TAAAT
14990013 AAGAGAAAATAA
1 AAGA-AAAATAA
14990025 GGGAAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 8 0.36
14 10 0.45
15 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (13 bp):
AAGAAAAATAAAT
Found at i:14992299 original size:75 final size:75
Alignment explanation
Indices: 14992176--14992325 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
14992166 AGAGTAATAG
*
14992176 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCGTCT
1 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
14992241 GATGCTGATT
66 GATGCTGATT
*
14992251 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAGTCTAGTGTGGAGGAGAATTCCTCT
1 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
14992316 GATGCTGATT
66 GATGCTGATT
14992326 CCTCAATGAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (75 bp):
TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
GATGCTGATT
Found at i:14995455 original size:12 final size:12
Alignment explanation
Indices: 14995438--14995463 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14995428 CAAAACAGGC
14995438 TTTTAGCGGCGT
1 TTTTAGCGGCGT
14995450 TTTTAGCGGCGT
1 TTTTAGCGGCGT
14995462 TT
1 TT
14995464 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:14995497 original size:41 final size:38
Alignment explanation
Indices: 14995452--14995583 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 38
14995442 AGCGGCGTTT
*
14995452 TTAGCGGCGTTTGGATAAAAAACGCCGCTAAAAATCAAGCA
1 TTAGCGGCGTTT--ATAAAAAACGCCACTAAAAAT-AAGCA
* * * *
14995493 TTAGCGGCGCTTCTAATAAAACGCCACTAAAGATAGAGTA
1 TTAGCGGCGTTTATAA-AAAACGCCACTAAAAATA-AGCA
* *
14995533 TTAGCGGCGCTTTTTAAAAAACGCCACTAAAAATGAGCA
1 TTAGCGGCG-TTTATAAAAAACGCCACTAAAAATAAGCA
*
14995572 TTAGTGGCGTTT
1 TTAGCGGCGTTT
14995584 TCCACAAAGC
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
38 3 0.04
39 15 0.19
40 43 0.56
41 16 0.21
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (38 bp):
TTAGCGGCGTTTATAAAAAACGCCACTAAAAATAAGCA
Found at i:14995523 original size:40 final size:39
Alignment explanation
Indices: 14995467--14995585 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 39
14995457 GGCGTTTGGA
*
14995467 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGC-TTC
1 TAAAAAACGCCACTAAAAAT-AAGCATTAGCGGCGCTTTC
* * *
14995506 TAATAAAACGCCACTAAAGATAGAGTATTAGCGGCGCTTTT
1 TAA-AAAACGCCACTAAAAATA-AGCATTAGCGGCGCTTTC
* * *
14995547 TAAAAAACGCCACTAAAAATGAGCATTAGTGGCGTTTTC
1 TAAAAAACGCCACTAAAAATAAGCATTAGCGGCGCTTTC
14995586 CACAAAGCGC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 18 0.27
40 44 0.66
41 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (39 bp):
TAAAAAACGCCACTAAAAATAAGCATTAGCGGCGCTTTC
Found at i:14995713 original size:41 final size:41
Alignment explanation
Indices: 14995640--14995968 Score: 392
Period size: 41 Copynumber: 8.0 Consensus size: 41
14995630 AAGTTTTTGG
* * * * * *
14995640 GGGCATTAGCGGCGTTTTTTAAAAATCACCGCTAATGCTAA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
14995681 GGGCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAAAGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* **
14995722 GGTCTTTAGCGGTATTTTTGAAGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
14995763 GGGCTTTAGCGGCGTTTCTGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
** *
14995804 GTTCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC-A
* * * *
14995846 --TCTTTAGCGGTGTTTATGAAGAAGCGTCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* * *
14995885 GGGCTTTAGCGGCGTTTTTTGGAGAAGCGCCACTAATGCTTA
1 GGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTCA
* *
14995927 GGGATTTAGCGGCGTTTTTTGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTCA
14995969 AATTTATCAT
Statistics
Matches: 247, Mismatches: 37, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.00
40 34 0.14
41 152 0.62
42 60 0.24
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
Found at i:14996939 original size:14 final size:15
Alignment explanation
Indices: 14996920--14996964 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
14996910 AGGACAGTTA
14996920 TAAGGGTT-GGGGTT
1 TAAGGGTTAGGGGTT
14996934 TAAGGGTTAGGGG-T
1 TAAGGGTTAGGGGTT
*
14996948 TAGGGGTTAGGGGTT
1 TAAGGGTTAGGGGTT
14996963 TA
1 TA
14996965 TGGTTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (15 bp):
TAAGGGTTAGGGGTT
Found at i:14996949 original size:7 final size:7
Alignment explanation
Indices: 14996923--14996962 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
14996913 ACAGTTATAA
14996923 GGGTT-G
1 GGGTTAG
*
14996929 GGGTTTAA
1 GGG-TTAG
14996937 GGGTTAG
1 GGGTTAG
14996944 GGGTTAG
1 GGGTTAG
14996951 GGGTTAG
1 GGGTTAG
14996958 GGGTT
1 GGGTT
14996963 TATGGTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 3 0.10
7 24 0.80
8 3 0.10
ACGTcount: A:0.12, C:0.00, G:0.55, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:14996969 original size:14 final size:14
Alignment explanation
Indices: 14996922--14996969 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
14996912 GACAGTTATA
14996922 AGGGTT-GGGGTTT
1 AGGGTTAGGGGTTT
14996935 AAGGGTTAGGGG-TT
1 -AGGGTTAGGGGTTT
14996949 AGGGGTTAGGGGTTT
1 A-GGGTTAGGGGTTT
*
14996964 ATGGTT
1 AGGGTT
14996970 TATGTTTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.03
14 22 0.73
15 7 0.23
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (14 bp):
AGGGTTAGGGGTTT
Found at i:14998055 original size:17 final size:17
Alignment explanation
Indices: 14998030--14998069 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14998020 TCATTGCACT
*
14998030 GAAACCCTAGATGAGAA
1 GAAATCCTAGATGAGAA
14998047 GAAATCCTAGATGAGAA
1 GAAATCCTAGATGAGAA
14998064 GAAATC
1 GAAATC
14998070 GGAGGAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.23, T:0.15
Consensus pattern (17 bp):
GAAATCCTAGATGAGAA
Found at i:15000655 original size:160 final size:160
Alignment explanation
Indices: 15000069--15000636 Score: 1118
Period size: 160 Copynumber: 3.5 Consensus size: 160
15000059 AGCAGCATCG
*
15000069 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
15000134 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
*
15000199 GATGTTTTATCACTGTGATTGAGGTGTATA
131 TATGTTTTATCACTGTGATTGAGGTGTATA
15000229 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
15000294 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
15000359 TATGTTTTATCACTGTGATTGAGGTGTATA
131 TATGTTTTATCACTGTGATTGAGGTGTATA
15000389 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
15000454 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
15000519 TATGTTTTATCACTGTGATTGAGGTGTATA
131 TATGTTTTATCACTGTGATTGAGGTGTATA
15000549 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
15000614 TTTAAGTGCTGCAAATTGAAGTG
66 TTTAAGTGCTGCAAATTGAAGTG
15000637 CTTAGTTGCT
Statistics
Matches: 406, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
160 406 1.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (160 bp):
AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
TATGTTTTATCACTGTGATTGAGGTGTATA
Found at i:15000824 original size:23 final size:23
Alignment explanation
Indices: 15000078--15000823 Score: 561
Period size: 23 Copynumber: 32.7 Consensus size: 23
15000068 GAATGTTGTT
15000078 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* * *
15000101 AATTTAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
15000124 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
15000147 AATTGAAGTGTTTAAGTGCAGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
15000170 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
15000193 AATTG-AGATGTTTTA-TCACTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * * **
15000215 GATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
15000238 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* *
15000261 AATTTAAGTGTTTAAATGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
15000284 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
15000307 AATTGAAGTGTTTAAGTGCAGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
15000330 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
15000353 AATTGATA-TGTTTTA-TCACTG-T
1 AATTGA-AGTGTTTAAGT-GCTGCA
* * * * * **
15000375 GATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
15000398 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* *
15000421 AATTTAAGTGTTTAAATGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
15000444 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
15000467 AATTGAAGTGTTTAAGTGCAGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
15000490 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
15000513 AATTGATA-TGTTTTA-TCACTG-T
1 AATTGA-AGTGTTTAAGT-GCTGCA
* * * * * **
15000535 GATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
15000558 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* *
15000581 AATTTAAGTGTTTAAATGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
15000604 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
15000627 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
15000650 AATTG-AGATGTTTTA-TCGTTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * **
15000672 AACTG-AGATGTATAAATGTTGTT
1 AATTGAAG-TGTTTAAGTGCTGCA
15000695 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* * *
15000718 AATTTAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
15000741 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
15000764 AATTGAAGTGTTT-AGTTGCTGAA
1 AATTGAAGTGTTTAAG-TGCTGCA
*
15000787 AATTG-AGATGTTAAAGTGCTGC-
1 AATTGAAG-TGTTTAAGTGCTGCA
15000809 AATTGAAGTGTTTAA
1 AATTGAAGTGTTTAA
15000824 ATTTAACTTG
Statistics
Matches: 580, Mismatches: 102, Indels: 83
0.76 0.13 0.11
Matches are distributed among these distances:
22 87 0.15
23 484 0.83
24 8 0.01
25 1 0.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (23 bp):
AATTGAAGTGTTTAAGTGCTGCA
Found at i:15000825 original size:137 final size:136
Alignment explanation
Indices: 15000109--15000825 Score: 650
Period size: 137 Copynumber: 5.2 Consensus size: 136
15000099 CAAATTTAAG
* *
15000109 TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATT
1 TGTTT-AATGCTGT-AATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
* ** * * * ** * ** *
15000174 GAAGTGCTTAGTTGCTGGAAATTG-AGATGTTTTA-TCACTG-TGATTGAGGTG-TATAAATGTT
64 GAAGTGTTTAAATGCTGCAAATTGAAG-TGTTTAAGT-GCTGCAAATTGAAGTGCT-TAGTTGCT
** *
15000235 GTTAATTGATA
126 GGAAATTGAGA
* *
15000246 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
1 TGTTTAA-TGCTG-TAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
* * * * * **
15000311 GAAGTGTTTAAGTGCAGCAAATTGAAGTGCTT-AGTTGCTGGAAATTGATA-TGTTTTA-TCACT
64 GAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAG-TGCTGCAAATTGA-AGTG-CTTAGTTGCT
*
15000373 GTG--ATTGAGG
126 G-GAAATTGAGA
* * * * *
15000383 TGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAAT
1 TGT-TTAATGCTG-TAATTGA-AGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAAT
* *
15000447 TGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATTGAAGTGCTTAGTTGCTGG
63 TGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGG
*
15000512 AAATTGATA
128 AAATTGAGA
* * * * * * **
15000521 TGTTTTATCACTGTGATTGAGGTGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATT
1 TGTTTAAT-GCTGTAATTGAAGTGTTTAAATGCTGCAAATTGA-AGTGTTTAAGTGCTGCAAATT
*
15000585 TAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGGA
64 GAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGGA
15000650 AATTGAGA
129 AATTGAGA
* * * * * **
15000658 TGTTTTATCGTTGTAACTG-AGATGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAAT
1 TGTTTAAT-GCTGTAATTGAAG-TGTTTAAATGCTGCAAATTGA-AGTGTTTAAGTGCTGCAAAT
* * * *
15000721 TTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTGCTGA
63 TGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGG
15000786 AAATTGAGA
128 AAATTGAGA
* *
15000795 TGTTAAAGTGCTGCAATTGAAGTGTTTAAAT
1 TGTTTAA-TGCTGTAATTGAAGTGTTTAAAT
15000826 TTAACTTGTT
Statistics
Matches: 488, Mismatches: 69, Indels: 46
0.81 0.11 0.08
Matches are distributed among these distances:
136 9 0.02
137 444 0.91
138 32 0.07
139 2 0.00
140 1 0.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (136 bp):
TGTTTAATGCTGTAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGA
AGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGGAAA
TTGAGA
Found at i:15001546 original size:43 final size:43
Alignment explanation
Indices: 15001428--15001719 Score: 388
Period size: 43 Copynumber: 6.8 Consensus size: 43
15001418 TTTTCGTGAC
* * *
15001428 CTTTAGTGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* ** **
15001471 CTTT-GCGGGGTTTGTGGGAAAAATGCCGCTAAAGGTCCTAAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * *
15001513 CTTTAGCGGCGTTTATGGGAAAAGCGACGCTAAAGGTCCTGAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * * *
15001556 CTTTAGCGGCATTTGTGGGTAAAGCGCCACTAAAGGTTCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * **
15001599 CTTTAGCGGCATTTGTGGGTAAAGTACCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* *
15001642 CTTTAGCGGCGTTTGTGGGTAAAGCGCCACTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
15001685 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
15001720 TTAGCGACGC
Statistics
Matches: 217, Mismatches: 31, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 34 0.16
43 183 0.84
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
Found at i:15001818 original size:22 final size:22
Alignment explanation
Indices: 15001791--15001832 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
15001781 TAGGGACGCT
*
15001791 AAAAGCGCCGCTAAATGCCTAA
1 AAAAGCGCCGCTAAAAGCCTAA
15001813 AAAAGCGCCGCTAAAAGCCT
1 AAAAGCGCCGCTAAAAGCCT
15001833 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGCGCCGCTAAAAGCCTAA
Found at i:15003799 original size:26 final size:29
Alignment explanation
Indices: 15003770--15003830 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 29
15003760 TTTGTTAGGA
* *
15003770 CTTTGAAT-ATTTCCTC-TTTGAAC-TTT
1 CTTTGAATAATATCATCTTTTGAACTTTT
15003796 CTTTG-ATAATATCATCTTTTGAACTTTT
1 CTTTGAATAATATCATCTTTTGAACTTTT
15003824 CTTTGAA
1 CTTTGAA
15003831 ACATTACCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 11 0.38
27 7 0.24
28 8 0.28
29 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.08, T:0.52
Consensus pattern (29 bp):
CTTTGAATAATATCATCTTTTGAACTTTT
Found at i:15007534 original size:19 final size:19
Alignment explanation
Indices: 15007497--15007532 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15007487 TTTTGACTAA
15007497 CATCTATGATTTCTATTTT
1 CATCTATGATTTCTATTTT
15007516 CATC-ATGATTTCT-TTTT
1 CATCTATGATTTCTATTTT
15007533 TTATAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.19, C:0.17, G:0.06, T:0.58
Consensus pattern (19 bp):
CATCTATGATTTCTATTTT
Found at i:15009476 original size:13 final size:13
Alignment explanation
Indices: 15009458--15009482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15009448 TTTTACAAAG
15009458 AAAAATAAAAAAT
1 AAAAATAAAAAAT
15009471 AAAAATAAAAAA
1 AAAAATAAAAAA
15009483 CCAAAACCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:15010788 original size:24 final size:26
Alignment explanation
Indices: 15010760--15010819 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
15010750 TCCTATGCTA
15010760 TTTATTTTGAAA-T-TATTTA-TATTG
1 TTTATTTTGAAACTGT-TTTATTATTG
* *
15010784 TTTATTTCGAAACTGTTTTATTTTTG
1 TTTATTTTGAAACTGTTTTATTATTG
15010810 TTTATTTTGA
1 TTTATTTTGA
15010820 GTTTCTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 11 0.37
25 5 0.17
26 14 0.47
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.63
Consensus pattern (26 bp):
TTTATTTTGAAACTGTTTTATTATTG
Found at i:15023181 original size:43 final size:43
Alignment explanation
Indices: 15023129--15023367 Score: 172
Period size: 43 Copynumber: 5.6 Consensus size: 43
15023119 AGATTGAAGA
15023129 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
* * *
15023172 TCTTATCTCCCTTAGCAGTAGTGGAGCAGA--GAGAAGAAACC-G
1 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGA-AAG-TACCAG
* ** * * * * *
15023214 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG-TA-T-CCAA
1 -TCTTATCTCCCT-AAGCAGTAGTGGAGCGGATCGAAAGTACCAG
* * * * * * *
15023256 CCTTATCTTCCTGAGCAGTAGCGGAGTAGG-TCCAAGATTGA--AG
1 TCTTATCTCCCTAAGCAGTAGTGGAG-CGGATCGAA-AGT-ACCAG
15023299 ATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
*
15023343 TCTTATCTCCTTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGA
15023368 ACAGACAGAA
Statistics
Matches: 145, Mismatches: 34, Indels: 34
0.68 0.16 0.16
Matches are distributed among these distances:
40 10 0.07
41 14 0.10
42 6 0.04
43 72 0.50
44 42 0.29
46 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
Found at i:15023248 original size:87 final size:83
Alignment explanation
Indices: 15023127--15023438 Score: 245
Period size: 87 Copynumber: 3.6 Consensus size: 83
15023117 CAAGATTGAA
* ** * *
15023127 GATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTA
1 GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCG-AA-T-CCAGTCTTATCTCCCTTAGCAGTA
15023192 GTGGAGCAGAGAGAAGAAACC
63 GTGGAGCAGAGAGAAGAAACC
* * ** * * *
15023213 GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGTATCCAACCTTATCTTCCTGAGCAGTAGC
1 GATCTTATCTCTCT-AAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTCCCTTAGCAGTAGT
* **
15023278 GGAGTAG-GTCCAAGATTGAA--
65 GGAGCAGAG-AGAAGA---AACC
* ** * *
15023298 GATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCT-CCTTAAGCAGT
1 GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCG-AA-T-CCAGTCTTATCTCCCTT-AGCAGT
* *
15023362 AGTGGAACAGACAGAAGAAACCAC
62 AGTGGAGCAGAGAGAAGAAA-C-C
*
15023386 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCGGATCGCATCCAGTCTTATCTC
1 -GATCTTATCTCTCT-AAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTC
15023439 ACTGAAGTTG
Statistics
Matches: 172, Mismatches: 37, Indels: 32
0.71 0.15 0.13
Matches are distributed among these distances:
83 1 0.01
84 49 0.28
85 15 0.09
86 18 0.10
87 57 0.33
88 1 0.01
89 14 0.08
90 17 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (83 bp):
GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTCCCTTAGCAGTAGTG
GAGCAGAGAGAAGAAACC
Found at i:15023380 original size:171 final size:175
Alignment explanation
Indices: 15023078--15023437 Score: 588
Period size: 171 Copynumber: 2.1 Consensus size: 175
15023068 GAAGTCATCA
*
15023078 TATCAAACCTTATC-TCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
1 TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
* *
15023142 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAGCAGAGAGAA
66 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAACAGACAGAA
15023207 GAAA-C-C-GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
131 GAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
*
15023249 TATCCAACCTTATCTTC-CTGAGCAGTAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
1 TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
15023313 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCT-CCTTAAGCAGTAGTGGAACAGACAGA
66 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTT-AGCAGTAGTGGAACAGACAGA
* *
15023377 AGAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCGGATCG
130 AGAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
* **
15023423 CATCCAGTCTTATCT
1 TATCCAACCTTATCT
15023438 CACTGAAGTT
Statistics
Matches: 175, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
170 4 0.02
171 121 0.69
172 3 0.02
173 1 0.01
174 46 0.26
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (175 bp):
TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAACAGACAGAA
GAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
Found at i:15023492 original size:85 final size:87
Alignment explanation
Indices: 15023339--15023501 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 87
15023329 ATCGAAAGTA
* * * * *
15023339 CCAGTCTTATCTCCTTAAGCAGTAGTGGAACAGACAGAAGAAACCACAGATCTTATCTCTCTGAA
1 CCAGTCTTATCTCCTGAAGCAGCAGTGGAACAGACAAAAGAAACCACAGATCCTATCTCCCTGAA
15023404 GTTGCAGTAGAGCGGATCGCAT
66 GTTGCAGTAGAGCGGATCGCAT
**
15023426 CCAGTCTTATCTCACTGAAGTTGCAGT-GAAGCAGACAAAAGAAA-C-CA-ATCCTATCTCCCTG
1 CCAGTCTTATCTC-CTGAAGCAGCAGTGGAA-CAGACAAAAGAAACCACAGATCCTATCTCCCTG
* *
15023487 AAGTTGTAGTGGAGC
64 AAGTTGCAGTAGAGC
15023502 AGATTAAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 25 0.38
86 2 0.03
87 17 0.26
88 21 0.32
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (87 bp):
CCAGTCTTATCTCCTGAAGCAGCAGTGGAACAGACAAAAGAAACCACAGATCCTATCTCCCTGAA
GTTGCAGTAGAGCGGATCGCAT
Found at i:15025836 original size:43 final size:43
Alignment explanation
Indices: 15025775--15025859 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
15025765 ACGTCATTGT
*
15025775 ATTGTAAATTAAGCTCCAATATAGTTATCCAACTTAGATTGCC
1 ATTGTAAACTAAGCTCCAATATAGTTATCCAACTTAGATTGCC
15025818 ATTGTAAACTAAGCTCCAATATAGTTATCCAACTTAGATTGC
1 ATTGTAAACTAAGCTCCAATATAGTTATCCAACTTAGATTGC
15025860 TTTATTTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (43 bp):
ATTGTAAACTAAGCTCCAATATAGTTATCCAACTTAGATTGCC
Found at i:15028139 original size:19 final size:18
Alignment explanation
Indices: 15028106--15028152 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
15028096 TTCACTTCGT
*
15028106 ATTTCATCATTTCATATTAC
1 ATTTC-TCATCTCATATT-C
15028126 ATTTCTCATCTCATATTC
1 ATTTCTCATCTCATATTC
*
15028144 ATTTATCAT
1 ATTTCTCAT
15028153 TTTTGCCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 11 0.44
20 5 0.20
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTCTCATCTCATATTC
Found at i:15028177 original size:43 final size:43
Alignment explanation
Indices: 15028127--15028212 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
15028117 TCATATTACA
15028127 TTTCTCATCTCATATTCATTTATCAT-TTTTGCCATTTCAATAT
1 TTTCTCATCTCATATTCATTTATCATCTTTT-CCATTTCAATAT
* * *
15028170 TTTCTCATCTTATATTCATTTCTCATCTTTTCTATTTCAATAT
1 TTTCTCATCTCATATTCATTTATCATCTTTTCCATTTCAATAT
15028213 CAATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.22, C:0.21, G:0.01, T:0.56
Consensus pattern (43 bp):
TTTCTCATCTCATATTCATTTATCATCTTTTCCATTTCAATAT
Found at i:15031071 original size:7 final size:7
Alignment explanation
Indices: 15031059--15031086 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
15031049 AAATTAAGTA
15031059 ATAAAAT
1 ATAAAAT
15031066 ATAAAAT
1 ATAAAAT
15031073 ATAAAAT
1 ATAAAAT
15031080 ATAAAAT
1 ATAAAAT
15031087 TTAGAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAAAAT
Found at i:15031819 original size:33 final size:32
Alignment explanation
Indices: 15031782--15031855 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 32
15031772 TTTAAATTTT
*
15031782 AATATTTTTATAAATTTTTTTTACAATGTTAAA
1 AATATTTTTAT-AATTTTTTTGACAATGTTAAA
* * *
15031815 AATATTCTTTATAATTTTTTTGACAATTTTTAT
1 AATATT-TTTATAATTTTTTTGACAATGTTAAA
15031848 AATATTTT
1 AATATTTT
15031856 ATTAGAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.06
33 29 0.81
34 5 0.14
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (32 bp):
AATATTTTTATAATTTTTTTGACAATGTTAAA
Found at i:15037302 original size:15 final size:15
Alignment explanation
Indices: 15037277--15037316 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
15037267 TTTCATCAAC
*
15037277 ATCACTAATAAAAAA
1 ATCATTAATAAAAAA
*
15037292 ATTATTAATAAAAAA
1 ATCATTAATAAAAAA
15037307 ATCATTAATA
1 ATCATTAATA
15037317 CATTTGTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ATCATTAATAAAAAA
Found at i:15037685 original size:6 final size:6
Alignment explanation
Indices: 15037659--15037715 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
15037649 AACTCTCTAC
* * * * *
15037659 AATATT AA-ATT TATATT AATATG AATATG ACTATG AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
15037706 AATATT AATA
1 AATATT AATA
15037716 AAAGTGTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
5 4 0.09
6 40 0.91
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (6 bp):
AATATT
Found at i:15041447 original size:100 final size:100
Alignment explanation
Indices: 15041274--15041474 Score: 350
Period size: 100 Copynumber: 2.0 Consensus size: 100
15041264 AAAAGGCTAA
*
15041274 ACTCGTAGATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
1 ACTCGTAAATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
* *
15041339 TCTAATATTTTAATCAATACTTTCCCATGTATACC
66 TCTAATATTTTAATCAATACCTTCCCATATATACC
*
15041374 ACTCGTAAATAATCATT-TCGTTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTT
1 ACTCGTAAATAATCATTCT-ATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTT
15041438 TTCTAATATTTTAATCAATACCTTCCCATATATACC
65 TTCTAATATTTTAATCAATACCTTCCCATATATACC
15041474 A
1 A
15041475 AACGTTTTAA
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 1 0.01
100 95 0.99
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (100 bp):
ACTCGTAAATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
TCTAATATTTTAATCAATACCTTCCCATATATACC
Found at i:15043955 original size:12 final size:12
Alignment explanation
Indices: 15043933--15043961 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15043923 AAAATGAAGT
15043933 TATTT-AAATAC
1 TATTTAAAATAC
15043944 TATTTAAAATAC
1 TATTTAAAATAC
15043956 TATTTA
1 TATTTA
15043962 GGCAAGACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTTAAAATAC
Found at i:15044821 original size:26 final size:26
Alignment explanation
Indices: 15044789--15044841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15044779 AACATGGGAT
*
15044789 ATAAGAAATTAAGATCAAAATATAAA
1 ATAAGAAATTAACATCAAAATATAAA
* *
15044815 ATAAGAAATTAACATTAGAATATAAA
1 ATAAGAAATTAACATCAAAATATAAA
15044841 A
1 A
15044842 CAAATTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.25
Consensus pattern (26 bp):
ATAAGAAATTAACATCAAAATATAAA
Found at i:15045228 original size:50 final size:50
Alignment explanation
Indices: 15045153--15045255 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 50
15045143 AAAAATACAA
* **
15045153 AAAAATATTTACAAATATAATTCATTGATAAAAGAATAAGTGTTAGTATG
1 AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
* *
15045203 AAAATTATATACAAGTATAATTCATTGATAAAAGAATAAGCATTAGTATG
1 AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
15045253 AAA
1 AAA
15045256 TAAACTTGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (50 bp):
AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
Found at i:15047342 original size:43 final size:43
Alignment explanation
Indices: 15047244--15047407 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 43
15047234 TAAGGTTACC
* * *
15047244 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAT
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* *
15047286 GAGAATTT-GTGTAAGACCATGTCTGGGAAATTGGCATCGATAT
1 GAG-ATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* * * *
15047329 GTGATTTCATGTAAGACCATGGCTGGGCTATTGGCATCGATAC
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* * * *
15047372 GAGATTACATGTAAGATCATATCTAGGATA-TGGCAT
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCAT
15047408 TGTTACGGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 33 0.32
43 70 0.68
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (43 bp):
GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
Found at i:15053105 original size:24 final size:25
Alignment explanation
Indices: 15053050--15053112 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
15053040 TTTTAGATCA
* *
15053050 CTTGATTCATCAACTTCGTTCCTTT
1 CTTGATTCATCGACTTCGCTCCTTT
15053075 CTTGATTCATCGACTTCGCTCC-TT
1 CTTGATTCATCGACTTCGCTCCTTT
15053099 CTTGATTCATCGAC
1 CTTGATTCATCGAC
15053113 CATTCCGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 16 0.44
25 20 0.56
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.43
Consensus pattern (25 bp):
CTTGATTCATCGACTTCGCTCCTTT
Found at i:15055216 original size:21 final size:21
Alignment explanation
Indices: 15055192--15055236 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
15055182 TCAACAAGGG
* *
15055192 TGTTTTCAAAATTCAATACTT
1 TGTTTTCAAAACTCAACACTT
*
15055213 TGTTTTCGAAACTCAACACTT
1 TGTTTTCAAAACTCAACACTT
15055234 TGT
1 TGT
15055237 GCTCATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (21 bp):
TGTTTTCAAAACTCAACACTT
Found at i:15056652 original size:103 final size:102
Alignment explanation
Indices: 15056513--15056710 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 102
15056503 TGAAGAAAGG
15056513 GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTG-CCCAATA
1 GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAA-A
15056577 CCCT-ATATCCCTTT-TTCTCTAACAGTGAAGATGGTGAA
65 CCCTCA-ATCCCTTTCTT-TCTAACAGTGAAGATGGTGAA
* * *
15056615 GGAACAAAATAAGGAAAATCT-AGTCTCCCTGATGAGAAATTGAATAGATGTTGAGTTGCCCCAA
1 GGAAAAAAAT-AGGAAAAT-TAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAA
15056679 ACCCTCAATCCCTTTCTTTCTAACAGTGAAGA
64 ACCCTCAATCCCTTTCTTTCTAACAGTGAAGA
15056711 CGATGAAGAA
Statistics
Matches: 88, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
102 9 0.10
103 70 0.80
104 9 0.10
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (102 bp):
GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAAAC
CCTCAATCCCTTTCTTTCTAACAGTGAAGATGGTGAA
Found at i:15058033 original size:20 final size:21
Alignment explanation
Indices: 15058005--15058049 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
15057995 GTTTGAATGT
*
15058005 TGTTAATT-ATGTTGCCCAAA
1 TGTTAATTAAAGTTGCCCAAA
* *
15058025 TGTTCATTAAAGTTGTCCAAA
1 TGTTAATTAAAGTTGCCCAAA
15058046 TGTT
1 TGTT
15058050 TATGCATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (21 bp):
TGTTAATTAAAGTTGCCCAAA
Found at i:15058171 original size:71 final size:70
Alignment explanation
Indices: 15058030--15058172 Score: 157
Period size: 71 Copynumber: 2.0 Consensus size: 70
15058020 CCAAATGTTC
* * * *
15058030 ATTAAAGTTGTCCAAATGTTTATGCATTAAGGTGGTCTGAATGTTGTGAATTTAAGTTATCTGAA
1 ATTAAAGTTGTCCAAATGCTTATGAATTAAGGTGGTCTGAATGTTGTGAACTAAAGTTATCTGAA
*
15058095 TGCTA
66 CGCTA
* * *
15058100 ATTAAATGTTGTCCAAATGCCTT-TGAATTAATGTGGTCTGAAATGTTGT-AACTAAA-TTCTGT
1 ATTAAA-GTTGTCCAAATG-CTTATGAATTAAGGTGGTCTG-AATGTTGTGAACTAAAGTTATCT
15058162 CGAACGCTA
63 -GAACGCTA
15058171 AT
1 AT
15058173 GTAATGAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
70 10 0.16
71 41 0.67
72 10 0.16
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (70 bp):
ATTAAAGTTGTCCAAATGCTTATGAATTAAGGTGGTCTGAATGTTGTGAACTAAAGTTATCTGAA
CGCTA
Found at i:15058444 original size:22 final size:22
Alignment explanation
Indices: 15058418--15058460 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
15058408 GAAAAGAAGA
15058418 TAGAAAAAGTGGAGAGTCTGGG
1 TAGAAAAAGTGGAGAGTCTGGG
15058440 TAGAAAAAGTGGAGAGTCTGG
1 TAGAAAAAGTGGAGAGTCTGG
15058461 AGAGCCCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.40, T:0.19
Consensus pattern (22 bp):
TAGAAAAAGTGGAGAGTCTGGG
Found at i:15058718 original size:24 final size:24
Alignment explanation
Indices: 15058668--15058729 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
15058658 AAGAGTCAAA
* ***
15058668 AACTGTATTTACAGAAATGTTGGG
1 AACTGTATTTATAGAAATGTCACG
*
15058692 AACTGTATTTATAGGAATGTCACG
1 AACTGTATTTATAGAAATGTCACG
*
15058716 AACTATATTGTATA
1 AACTGTATT-TATA
15058730 ATTATTACGA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (24 bp):
AACTGTATTTATAGAAATGTCACG
Found at i:15059191 original size:39 final size:39
Alignment explanation
Indices: 15059110--15059191 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
15059100 TTAGAAAACG
* * *
15059110 GAAGGTCGAGATTGTAAATCAGTAGACTATAAGAAAGCT
1 GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
** *
15059149 GAAGGTCTTGATTGTAAATCAGCAGACCATAAAAAAGTT
1 GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
15059188 GAAG
1 GAAG
15059192 CTCATGATCG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23
Consensus pattern (39 bp):
GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
Found at i:15059207 original size:39 final size:39
Alignment explanation
Indices: 15059125--15059208 Score: 96
Period size: 39 Copynumber: 2.2 Consensus size: 39
15059115 TCGAGATTGT
* * * * * * *
15059125 AAATCAGTAGACTATAAGAAAGCTGAAGGTCTTGATTGT
1 AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
*
15059164 AAATCAGCAGACCATAAAAAAGTTGAAGCTCATGATCGA
1 AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
15059203 AAATCA
1 AAATCA
15059209 ATGGATCGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (39 bp):
AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
Found at i:15060664 original size:16 final size:16
Alignment explanation
Indices: 15060643--15060675 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15060633 TCCTAAACTT
15060643 AGTTTTTTTCACATTG
1 AGTTTTTTTCACATTG
15060659 AGTTTTTTTCACATTG
1 AGTTTTTTTCACATTG
15060675 A
1 A
15060676 TTCAATTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (16 bp):
AGTTTTTTTCACATTG
Found at i:15062040 original size:14 final size:13
Alignment explanation
Indices: 15061987--15062040 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
15061977 AAATTTAATT
*
15061987 AATTAAAGATAAA
1 AATTAAAGAAAAA
* *
15062000 AATAATAAGAATAA
1 AATTA-AAGAAAAA
*
15062014 AATTAAAGTAAAAC
1 AATTAAAG-AAAAA
15062028 AATTAAAGAAAAA
1 AATTAAAGAAAAA
15062041 GAAAGATAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
13 11 0.34
14 21 0.66
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTAAAGAAAAA
Found at i:15068165 original size:37 final size:36
Alignment explanation
Indices: 15068110--15068183 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 36
15068100 ACACAACCGT
15068110 GTGGCTCCTCCCACACGAGCTTGTTGATCCCTACAC
1 GTGGCTCCTCCCACACGAGCTTGTTGATCCCTACAC
*
15068146 NGTGGGTCCTCCCACACGAGCTTGTTGATCCCTACAC
1 -GTGGCTCCTCCCACACGAGCTTGTTGATCCCTACAC
15068183 G
1 G
15068184 GCCTAGGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.24
Consensus pattern (36 bp):
GTGGCTCCTCCCACACGAGCTTGTTGATCCCTACAC
Found at i:15075771 original size:39 final size:38
Alignment explanation
Indices: 15075712--15075914 Score: 156
Period size: 39 Copynumber: 5.2 Consensus size: 38
15075702 CTCATGATCT
* *
15075712 GTTGATTTAAGATCACGACCTTTGGCTTTCTTACGGTGC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGT-C
* * * *
15075751 GTTGATTTATGATCATGACCTTCAGCTTTCTTATGGTC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
* * * * * *
15075789 TGCTGATTTACGATCATGACCTTCGACTTTCTGACAGTTT
1 -GTTGATTTACGATCACGACCTTCGGCTTTCTTAC-GGTC
* * * *
15075829 GCTAATTTATGATCACGACCTTCGGCTTTCTTACGATCC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGT-C
* ** **
15075868 GCTT-ATTTACGACCACGACCTTTAGCTTTCTTATAGTC
1 G-TTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
15075906 TGTTGATTT
1 -GTTGATTT
15075915 GATTTATGAT
Statistics
Matches: 130, Mismatches: 28, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
38 6 0.05
39 121 0.93
40 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (38 bp):
GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
Found at i:15075897 original size:78 final size:78
Alignment explanation
Indices: 15075755--15075898 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
15075745 CGGTGCGTTG
* * * * * * *
15075755 ATTTATGATCATGACCTTCAGCTTTCTTATGGTCTGCTGATTTACGATCATGACCTTCGACTTTC
1 ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACCTTAGACTTTC
15075820 TGACAGTTTGCTA
66 TGACAGTTTGCTA
* *
15075833 ATTTATGATCACGACCTTCGGCTTTCTTACGATCCGCTTATTTACGACCACGACCTTTAG-CTTT
1 ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACC-TTAGACTTT
15075897 CT
65 CT
15075899 TATAGTCTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 53 0.95
79 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (78 bp):
ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACCTTAGACTTTC
TGACAGTTTGCTA
Found at i:15076125 original size:36 final size:35
Alignment explanation
Indices: 15076085--15076172 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
15076075 CGGCTTCAGT
** *
15076085 TCATTGATTTACGATCATGAACACTTCATAAAGAGC
1 TCATTGATTTACGATCATG-ACACCACATAAACAGC
* * * * *
15076121 TCATTGATTTATGATCGTGACTCCACTTAAACAGT
1 TCATTGATTTACGATCATGACACCACATAAACAGC
15076156 TCATTGATTTACGATCA
1 TCATTGATTTACGATCA
15076173 CAGCTTCAGC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
35 25 0.60
36 17 0.40
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (35 bp):
TCATTGATTTACGATCATGACACCACATAAACAGC
Found at i:15076179 original size:98 final size:98
Alignment explanation
Indices: 15076064--15076270 Score: 290
Period size: 98 Copynumber: 2.1 Consensus size: 98
15076054 AAGCTAGCTA
* * * * * * *
15076064 ATTTACAATCACGGCTTCAGTTCATTGATTTACGATCATGAACACTTCATAAAGAGCTCATTGAT
1 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
** * *
15076129 TTATGATCGT-GACTCCACTTAAACAGTTCATTG
66 TTACAATC-TCAACTCCACTTAAACAGTTCACTG
*
15076162 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGTTCACTAAT
1 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
15076227 TTACAATCTCAACTCCACTTAAACAGTTCACTG
66 TTACAATCTCAACTCCACTTAAACAGTTCACTG
15076260 ATTTACGATCA
1 ATTTACGATCA
15076271 TGACTGTCGC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 1 0.01
98 95 0.99
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (98 bp):
ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
TTACAATCTCAACTCCACTTAAACAGTTCACTG
Found at i:15076974 original size:48 final size:49
Alignment explanation
Indices: 15076916--15077024 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 49
15076906 AAGGGAGGAT
15076916 CTCCAAACTC-TCTACTTTTTTCCATCTTC-TCT-ACCAAAAAACCCATTC
1 CTCCAAACTCTTC-ACTTTTTT-CATCTTCTTCTCACCAAAAAACCCATTC
* * * * *
15076964 CTCCAGACTCTTCACTTTTTTTATCTTCTTCTCCACCAAAACACTCATTT
1 CTCCAAACTCTTCACTTTTTTCATCTTCTTCT-CACCAAAAAACCCATTC
15077014 CTCCAAACTCT
1 CTCCAAACTCT
15077025 AACCACCTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
47 6 0.12
48 20 0.39
49 2 0.04
50 23 0.45
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.38
Consensus pattern (49 bp):
CTCCAAACTCTTCACTTTTTTCATCTTCTTCTCACCAAAAAACCCATTC
Found at i:15078877 original size:49 final size:49
Alignment explanation
Indices: 15078779--15078920 Score: 140
Period size: 49 Copynumber: 2.9 Consensus size: 49
15078769 GCATGAAACG
* * * * *
15078779 TGAACTCGTGACTGTATAACCACTGTCAATTGAGAGCTCAAGTTGTACT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
* * * * *
15078828 TGAACCCGTGACTGCATAACCACCATCAACTGGGAGCCCTATTTATACT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
* * * * * *
15078877 TCAACCCATAACTGTATAACTACCGTGAATTGGGAGCCCGAGTT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTT
15078921 GCAATTCAAC
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
Found at i:15079820 original size:23 final size:23
Alignment explanation
Indices: 15079775--15079827 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
15079765 TAAACTAGTA
* **
15079775 GAGAGAATTGAGAGAATTTGATT
1 GAGAGAATTGAAAGAATAGGATT
15079798 GAGAGAATTGAAAGAATAGGATT
1 GAGAGAATTGAAAGAATAGGATT
*
15079821 GAAAGAA
1 GAGAGAA
15079828 GACAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (23 bp):
GAGAGAATTGAAAGAATAGGATT
Found at i:15086612 original size:16 final size:16
Alignment explanation
Indices: 15086603--15086637 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
15086593 AAGTTTTTGT
15086603 GAATAAAAGTTTGAGG
1 GAATAAAAGTTTGAGG
15086619 GAATAAAAGTTTGAGG
1 GAATAAAAGTTTGAGG
15086635 GAA
1 GAA
15086638 AGTAAATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (16 bp):
GAATAAAAGTTTGAGG
Found at i:15087085 original size:9 final size:9
Alignment explanation
Indices: 15087068--15087098 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15087058 TCGAGTTGAT
15087068 TCGAATAAC
1 TCGAATAAC
*
15087077 TCGATTAAC
1 TCGAATAAC
15087086 TCGAATAAC
1 TCGAATAAC
15087095 TCGA
1 TCGA
15087099 TTTGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:15092499 original size:51 final size:51
Alignment explanation
Indices: 15092423--15092637 Score: 403
Period size: 51 Copynumber: 4.2 Consensus size: 51
15092413 CTGATCAGTA
15092423 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
15092474 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
15092525 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
* *
15092576 ACAAGTGATAAGTGGTAGCTTTAGCTACAGTTATTTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
*
15092627 GCAAGTGATAA
1 ACAAGTGATAA
15092638 ATGTAATCCG
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 161 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
Done.