Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 49 of 182
Found at i:15377032 original size:9 final size:9
Alignment explanation
Indices: 15377002--15377108 Score: 64
Period size: 9 Copynumber: 11.9 Consensus size: 9
15376992 TATATCATTC
15377002 CATAATTTA
1 CATAATTTA
*
15377011 CATAACTTA
1 CATAATTTA
15377020 -ATAATTTA
1 CATAATTTA
15377028 CATAATTTTAA
1 CATAA-TTT-A
* *
15377039 AATATATCATTC
1 CATA-AT--TTA
*
15377051 CATAACTTA
1 CATAATTTA
15377060 CA-AA-TTA
1 CATAATTTA
15377067 -AT-ATTATA
1 CATAATT-TA
*
15377075 CATAACTTA
1 CATAATTTA
15377084 CATAATTTA
1 CATAATTTA
*
15377093 CATAACTTA
1 CATAATTTA
15377102 -ATAATTT
1 CATAATTT
15377109 TAAAATATAT
Statistics
Matches: 76, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
6 2 0.03
7 4 0.05
8 17 0.22
9 36 0.47
10 5 0.07
11 6 0.08
12 4 0.05
13 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (9 bp):
CATAATTTA
Found at i:15378742 original size:21 final size:21
Alignment explanation
Indices: 15378716--15378786 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
15378706 CTACAACTTA
*
15378716 AAGCAGAGGCGGCAGCAAGGG
1 AAGCAGAGGCGGCAGCGAGGG
* *
15378737 AAGCAGAGGCAGCAGTGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
*
15378758 CAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
15378779 AAGCAGAG
1 AAGCAGAG
15378787 CAGAGCAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.48, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGGG
Found at i:15379186 original size:43 final size:42
Alignment explanation
Indices: 15379133--15379256 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
15379123 CATCAAACAA
* * *
15379133 TAGCGACGTTTGTGATCTAAGCGCCGTTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGAT-AAAGCGCCGCTAAAGAACATGACCTT
* * **
15379176 TAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGAACATGTTCTT
1 TAGCGGCGTTTGT-GATAAAGCGCCGCTAAAGAACATGACCTT
* * *
15379219 TTGCGGCGTTTGTTGGTGAAGCGCCGCTAAAGAACATG
1 TAGCGGCGTTTG-TGATAAAGCGCCGCTAAAGAACATG
15379257 GCATTTGGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 64 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
TAGCGGCGTTTGTGATAAAGCGCCGCTAAAGAACATGACCTT
Found at i:15379275 original size:33 final size:33
Alignment explanation
Indices: 15379227--15379289 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
15379217 TTTTGCGGCG
* *
15379227 TTTGTTGGTGAAGCGCCGCTAAAGAACATGGCA
1 TTTGGTGGTAAAGCGCCGCTAAAGAACATGGCA
15379260 TTTGGTGGTAAAGCGCCGCTAAAGAACATG
1 TTTGGTGGTAAAGCGCCGCTAAAGAACATG
15379290 TTCTTTAGCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (33 bp):
TTTGGTGGTAAAGCGCCGCTAAAGAACATGGCA
Found at i:15385341 original size:43 final size:42
Alignment explanation
Indices: 15385229--15385344 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
15385219 TTTATGATAG
*
15385229 AAACGCCGCTAAAGAACATGATCTTTAGCTGCACTTTAGCCAC
1 AAACACCGCTAAAGAACATGATCTTTAGC-GCACTTTAGCCAC
* * * * ** *
15385272 AAACACCACTAAAGATCATGTTCTTTAGCGACGCTTTCTCTAC
1 AAACACCGCTAAAGAACATGATCTTTAGCG-CACTTTAGCCAC
* *
15385315 AAACACCGCTAAAGAAAATGACCTTTAGCG
1 AAACACCGCTAAAGAACATGATCTTTAGCG
15385345 GCGTTTTTGG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (42 bp):
AAACACCGCTAAAGAACATGATCTTTAGCGCACTTTAGCCAC
Found at i:15389634 original size:92 final size:96
Alignment explanation
Indices: 15389529--15389701 Score: 282
Period size: 92 Copynumber: 1.8 Consensus size: 96
15389519 CGCAAATTTT
* *
15389529 TTTCATTTTGAACAAAACGATACCGTTTTGCTATTCT-AAAATTTTTT-TATT-TTTTT-ATAAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAATTTTTTATATTATTTTTAATAAA
15389590 TTGATTTATTTTTTGCATAAAAACGCCACTA
66 TTGATTTATTTTTTGCATAAAAACGCCACTA
* *
15389621 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTAATAAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAATTTTTTATATTATTTTTAATAAA
15389686 TTGATTTATTTTTTGC
66 TTGATTTATTTTTTGC
15389702 GGCGTTTTTA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 34 0.47
93 10 0.14
94 3 0.04
95 5 0.07
96 21 0.29
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (96 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAATTTTTTATATTATTTTTAATAAA
TTGATTTATTTTTTGCATAAAAACGCCACTA
Found at i:15391161 original size:14 final size:14
Alignment explanation
Indices: 15391142--15391175 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15391132 AACCTTAAAT
* *
15391142 CCCTAACTTTTAAC
1 CCCTAACATCTAAC
15391156 CCCTAACATCTAAC
1 CCCTAACATCTAAC
15391170 CCCTAA
1 CCCTAA
15391176 ACCCCTAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.00, T:0.26
Consensus pattern (14 bp):
CCCTAACATCTAAC
Found at i:15391185 original size:15 final size:15
Alignment explanation
Indices: 15391152--15391193 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
15391142 CCCTAACTTT
**
15391152 TAACCCCT-AACATC
1 TAACCCCTAAACCCC
15391166 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
*
15391181 TAACCCTTAAACC
1 TAACCCCTAAACC
15391194 TAATTAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:15391210 original size:24 final size:26
Alignment explanation
Indices: 15391173--15391222 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
15391163 ATCTAACCCC
15391173 TAAACCCCTAACCCTTAAACC-TAAT
1 TAAACCCCTAACCCTTAAACCATAAT
*
15391198 TAAATCCC-AACCCTTAAACCATAAT
1 TAAACCCCTAACCCTTAAACCATAAT
15391223 CCCTAATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (26 bp):
TAAACCCCTAACCCTTAAACCATAAT
Found at i:15391234 original size:14 final size:14
Alignment explanation
Indices: 15391216--15391257 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
15391206 AACCCTTAAA
15391216 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
15391230 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
15391245 CCATACTCCCTAA
1 CCATAATCCCTAA
15391258 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:15391254 original size:15 final size:15
Alignment explanation
Indices: 15391212--15391258 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
15391202 TCCCAACCCT
15391212 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
15391226 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
15391240 TAAATCCATACTCCC
1 TAAATCCATAATCCC
15391255 TAAA
1 TAAA
15391259 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:15391888 original size:74 final size:71
Alignment explanation
Indices: 15391768--15391933 Score: 260
Period size: 74 Copynumber: 2.3 Consensus size: 71
15391758 TAGCGGCGCT
15391768 TTTCCAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGACGTCGTTGGACTTAGGTTTTTTT
1 TTTCCAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGACGTCGTTGGACTTAGG-TTTTTT
15391833 TGCGACGC
65 T-CGACGC
* * *
15391841 TTTCTCAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGACTTAGGTTTTTT
1 TTTC-CAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGACGTCGTTGGACTTAGGTTTTTT
*
15391906 TCGGCGC
65 TCGACGC
15391913 TTTCCCAAAAACGCCGCTAAA
1 TTT-CCAAAAACGCCGCTAAA
15391934 GCCCTGAGCA
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
72 24 0.28
73 12 0.14
74 51 0.59
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (71 bp):
TTTCCAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGACGTCGTTGGACTTAGGTTTTTTT
CGACGC
Found at i:15392038 original size:114 final size:113
Alignment explanation
Indices: 15391839--15392047 Score: 310
Period size: 114 Copynumber: 1.8 Consensus size: 113
15391829 TTTTTGCGAC
* *
15391839 GCTTTCTCAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGACTTAGGTTTT
1 GCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGACTTAGGTTTT
*
15391904 TTTCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGT
66 TTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGT
* * * * *
15391952 GCTTTCTTAAAAATGCCTCTAAATCCCCGAAAGCTCGGGAAAACGGCATCGTTGGGCTTAGGTTT
1 GCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTC-AGAAAACGGCATCGTTGGACTTAGGTTT
***
15392017 TTTGCGGCGCTTTTTTAAAAACGCCGCTAAA
65 TTTGCGGCGCTTTCCCAAAAACGCCGCTAAA
15392048 TCCCCGAAAG
Statistics
Matches: 84, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 32 0.38
114 52 0.62
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (113 bp):
GCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGACTTAGGTTTT
TTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGT
Found at i:15392049 original size:73 final size:73
Alignment explanation
Indices: 15391947--15392114 Score: 230
Period size: 73 Copynumber: 2.3 Consensus size: 73
15391937 CTGAGCATTA
* * * * *
15391947 GCGGTGCTTTCTTAAAAATGCCTCTAAATCCCCGAAAGCTCGGGAAAACGGCATCGTTGGGCTTA
1 GCGGTGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCT-GAGAAAACAGCATCGTTGGGCTTA
15392012 GG-TTTTTT
65 GGTTTTTTT
* * *
15392020 GCGGCGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAACAGCGTCGTTGGGCTTAG
1 GCGGTGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCTGAGAAAACAGCATCGTTGGGCTTAG
15392085 GTTTTTTT
66 GTTTTTTT
**
15392093 GCGGTGCTTTTCCAAAAACGCC
1 GCGGTGCTTTTTTAAAAACGCC
15392115 CGCCGCTAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
72 22 0.27
73 61 0.73
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (73 bp):
GCGGTGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCTGAGAAAACAGCATCGTTGGGCTTAG
GTTTTTTT
Found at i:15392200 original size:191 final size:186
Alignment explanation
Indices: 15391773--15392239 Score: 630
Period size: 191 Copynumber: 2.5 Consensus size: 186
15391763 GCGCTTTTCC
* * *
15391773 AAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGACGTCGTTGGACTTAGGTTTTTTTTGCGA
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGG-TTTTTTTGCGG
* * * *
15391838 CGCTTTCTCAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGACTTAGGTTT
65 CGCTTTTTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGACTTAGGTTT
* * *
15391903 TTTTCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTTCTT
130 TTTTCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCAGCGCTTTCTT
* * * * *
15391960 AAAAATGCCTCTAAATCCCCGAAAGCTCGGGAAAACGGCATCGTTGGGCTTAGG-TTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTC-AGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGG
* * *
15392024 CGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAACAGCGTCGTTGGGCTTAGGTTT
65 CGCTTTTTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGACTTAGGTTT
* *
15392089 TTTTGCGGTGCTTTTCCAAAAACGCCCGCCGCTAAAGCCCTAAGCATTAGCAGCGCTTTCTT
130 TTTT-CGGCGCTTTCCCAAAAA----CGCCGCTAAAGCCCTAAGCATTAGCAGCGCTTTCTT
* * *
15392151 AAAAACGCAGCTAAATCCCCGAAAGCTCAAAAAAACGCCGTCGTTGGGCTTAGGTTTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTC-AGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGG
* *
15392216 TGCTTTTCAAAAAACGCCGCTAAA
65 CGCTTTTTAAAAAACGCCGCTAAA
15392240 GCCCTAAGCA
Statistics
Matches: 243, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
186 72 0.30
187 40 0.16
188 21 0.09
191 79 0.33
192 31 0.13
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (186 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGC
GCTTTTTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGACTTAGGTTTT
TTTCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCAGCGCTTTCTT
Found at i:15392279 original size:115 final size:115
Alignment explanation
Indices: 15392020--15392324 Score: 452
Period size: 115 Copynumber: 2.6 Consensus size: 115
15392010 TAGGTTTTTT
* * *
15392020 GCGGCGCTTTTTTAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAACAGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTCAGAAAAC-GCGTCGTTGGGCTTAG
*
15392085 GTTTTTTTGCGGTGCTTTTCCAAAAACGCCCGCCGCTAAAGCCCTAAGCATTA
65 GTTTTTTTGCGGTGCTTTTCCAAAAA--CACGCCGCTAAAGCCCTAAGCATTA
* *
15392138 GCAGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTCAAAAAAACGCCGTCGTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTC-AGAAAACG-CGTCGTTGGGCTTA
15392203 GGTTTTTTTGCGGTGCTTTT-CAAAAA-ACGCCGCTAAAGCCCTAAGCATTA
64 GGTTTTTTTGCGGTGCTTTTCCAAAAACACGCCGCTAAAGCCCTAAGCATTA
* * **
15392253 GCGGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTCGGGAAACGACGTCGTTTCGCTTAG
1 GCGGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTCAGAAAACG-CGTCGTTGGGCTTAG
15392318 GTTTTTT
65 GTTTTTT
15392325 GATAAGCGGC
Statistics
Matches: 172, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
114 25 0.15
115 63 0.37
118 44 0.26
119 40 0.23
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (115 bp):
GCGGCGCTTTCTTAAAAACGCAGCTAAATCCCCGAAAGCTCAGAAAACGCGTCGTTGGGCTTAGG
TTTTTTTGCGGTGCTTTTCCAAAAACACGCCGCTAAAGCCCTAAGCATTA
Found at i:15392403 original size:12 final size:12
Alignment explanation
Indices: 15392386--15392411 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15392376 TTTTTTATCC
15392386 AAACGCCGCTAA
1 AAACGCCGCTAA
15392398 AAACGCCGCTAA
1 AAACGCCGCTAA
15392410 AA
1 AA
15392412 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:15395238 original size:40 final size:40
Alignment explanation
Indices: 15395184--15395457 Score: 307
Period size: 40 Copynumber: 6.9 Consensus size: 40
15395174 CTTCAAATTA
* * * * *
15395184 ACCAGAGTATAAACAGGGGCACATATCTGCATTCGGGGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
* * *
15395224 ACCGAAGTACAAACA-GGGCATGTATGTGCATTTAGGGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
* **
15395263 ACCAAAGTACAAACAGGAGCACGTATGTGCATTCAAAGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
** * * * * *
15395303 ACTGAAGTACAAATAGGTGCATGTATGTGCAGTCAGAGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
* *
15395343 ACCAAAGTACAAACAAGGGCACGTAAGTGCATTCAGGGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
* * *
15395383 ATCGAAGTACAAACAGGGGCACGTATGTACATTCAGGGGT
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
* * *
15395423 ACCAAAGTACAAACATGAGCACATATGTGCATTCA
1 ACCAAAGTACAAACAGGGGCACGTATGTGCATTCA
15395458 TACAATTATT
Statistics
Matches: 192, Mismatches: 41, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 33 0.17
40 159 0.83
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (40 bp):
ACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGT
Found at i:15395399 original size:20 final size:19
Alignment explanation
Indices: 15395347--15395437 Score: 56
Period size: 20 Copynumber: 4.6 Consensus size: 19
15395337 AGAGGTACCA
* *
15395347 AAGTACAAACAAGGGCACG
1 AAGTACAAACAGGGGTACG
* **
15395366 TAAGTGCATTCAGGGGTATCG
1 -AAGTACAAACAGGGGTA-CG
*
15395387 AAGTACAAACAGGGGCACG
1 AAGTACAAACAGGGGTACG
* ** *
15395406 TATGTACATTCAGGGGTACCA
1 -AAGTACAAACAGGGGTA-CG
15395427 AAGTACAAACA
1 AAGTACAAACA
15395438 TGAGCACATA
Statistics
Matches: 51, Mismatches: 17, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
19 2 0.04
20 46 0.90
21 3 0.06
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.16
Consensus pattern (19 bp):
AAGTACAAACAGGGGTACG
Found at i:15396067 original size:24 final size:24
Alignment explanation
Indices: 15396009--15396067 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
15395999 ACCACGGAAG
* * *
15396009 GAGATGAAGACGAAGACGAGGGTG
1 GAGATGAAGATGAAGACGAGGATC
*
15396033 GAGATGAAGATGAAGATGAGGATC
1 GAGATGAAGATGAAGACGAGGATC
15396057 GAGATGAAGAT
1 GAGATGAAGAT
15396068 TAATACGGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.41, C:0.05, G:0.41, T:0.14
Consensus pattern (24 bp):
GAGATGAAGATGAAGACGAGGATC
Found at i:15398601 original size:20 final size:20
Alignment explanation
Indices: 15398564--15398602 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15398554 TTTTTGTTAA
* *
15398564 TTTTGATTTTTTTATTTTCT
1 TTTTAATTTTTATATTTTCT
*
15398584 TTTTAATTTTTATCTTTTC
1 TTTTAATTTTTATATTTTC
15398603 CCCCCAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTAATTTTTATATTTTCT
Found at i:15400942 original size:16 final size:16
Alignment explanation
Indices: 15400917--15400965 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
15400907 CAACAACTTG
*
15400917 GCTCATGGAAAAGCTA
1 GCTCAAGGAAAAGCTA
*
15400933 GCTCAAGGAAAATCTA
1 GCTCAAGGAAAAGCTA
* * *
15400949 GCTTAACGAAAGGCTA
1 GCTCAAGGAAAAGCTA
15400965 G
1 G
15400966 ATTGTTCAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (16 bp):
GCTCAAGGAAAAGCTA
Found at i:15403092 original size:22 final size:22
Alignment explanation
Indices: 15403064--15403109 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
15403054 CAGGTAATGT
15403064 CACCAAACTTTTAGATTGAAAA
1 CACCAAACTTTTAGATTGAAAA
15403086 CACCAAACTTTTAGATTGAAAA
1 CACCAAACTTTTAGATTGAAAA
15403108 CA
1 CA
15403110 ATCGTGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.26
Consensus pattern (22 bp):
CACCAAACTTTTAGATTGAAAA
Found at i:15410447 original size:30 final size:30
Alignment explanation
Indices: 15410411--15410470 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
15410401 GTGCATTCCT
15410411 GCAAAATAAGTTGCCACCAAAGATGAAAGA
1 GCAAAATAAGTTGCCACCAAAGATGAAAGA
*
15410441 GCAAAATAAGTTGCCACCGAAGATGAAAGA
1 GCAAAATAAGTTGCCACCAAAGATGAAAGA
15410471 TCCCAGAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.22, T:0.13
Consensus pattern (30 bp):
GCAAAATAAGTTGCCACCAAAGATGAAAGA
Found at i:15422554 original size:21 final size:21
Alignment explanation
Indices: 15422530--15422574 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
15422520 TTACCGGTAG
15422530 AACTAAGAGTTCTACCAATAT
1 AACTAAGAGTTCTACCAATAT
** * *
15422551 AACTTTGGGTTCTACCGATAT
1 AACTAAGAGTTCTACCAATAT
15422572 AAC
1 AAC
15422575 CCAGACTTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (21 bp):
AACTAAGAGTTCTACCAATAT
Found at i:15422797 original size:71 final size:71
Alignment explanation
Indices: 15422681--15422815 Score: 216
Period size: 71 Copynumber: 1.9 Consensus size: 71
15422671 GTGCTATCGT
* * * * *
15422681 TACCTTGAGGACTTCTACTGAAACAACTCAAGTCAGTAGCCAAAGTTCAGCATCTCCTGCACTTA
1 TACCTTGAAGACTTCTACCGAAACAAATCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTTA
15422746 TGCCTA
66 TGCCTA
*
15422752 TACCTTGAAGACTTTTACCGAAACAAATCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTT
1 TACCTTGAAGACTTCTACCGAAACAAATCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTT
15422816 CTACCAATAC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (71 bp):
TACCTTGAAGACTTCTACCGAAACAAATCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTTA
TGCCTA
Found at i:15425698 original size:11 final size:11
Alignment explanation
Indices: 15425684--15425721 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
15425674 TTTTATATTA
*
15425684 TTTTTGTTTTC
1 TTTTTCTTTTC
15425695 TTTTTCTTTTC
1 TTTTTCTTTTC
*
15425706 TTTTTCCTTTC
1 TTTTTCTTTTC
15425717 TTTTT
1 TTTTT
15425722 TCATGGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:15431504 original size:17 final size:16
Alignment explanation
Indices: 15431482--15431536 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
15431472 AGTTCAGACT
15431482 CAAAAAAGAAAAAAAA
1 CAAAAAAGAAAAAAAA
15431498 GCAAAAAA-AAGCAAAAAA
1 -CAAAAAAGAA--AAAAAA
*
15431516 CAAAAAAGCAAAAAAAT
1 CAAAAAAG-AAAAAAAA
15431533 CAAA
1 CAAA
15431537 GTCAAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 2 0.06
17 23 0.70
18 6 0.18
19 2 0.06
ACGTcount: A:0.80, C:0.11, G:0.07, T:0.02
Consensus pattern (16 bp):
CAAAAAAGAAAAAAAA
Found at i:15431520 original size:15 final size:15
Alignment explanation
Indices: 15431502--15431530 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15431492 AAAAAAGCAA
15431502 AAAAAAGCAAAAAAC
1 AAAAAAGCAAAAAAC
15431517 AAAAAAGCAAAAAA
1 AAAAAAGCAAAAAA
15431531 ATCAAAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAGCAAAAAAC
Found at i:15431531 original size:10 final size:10
Alignment explanation
Indices: 15431483--15431515 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
15431473 GTTCAGACTC
15431483 AAAAAAG-AA
1 AAAAAAGCAA
15431492 AAAAAAGCAA
1 AAAAAAGCAA
15431502 AAAAAAGCAA
1 AAAAAAGCAA
15431512 AAAA
1 AAAA
15431516 CAAAAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAGCAA
Found at i:15431582 original size:16 final size:16
Alignment explanation
Indices: 15431546--15431581 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15431536 AGTCAAAAAT
*
15431546 AAAAGAAAAAGAAGAA
1 AAAAGAAAAAAAAGAA
15431562 AAAAGAAAAGAAAAGAA
1 AAAAGAAAA-AAAAGAA
15431579 AAA
1 AAA
15431582 GGAGAGGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAGAA
Found at i:15433766 original size:50 final size:49
Alignment explanation
Indices: 15433712--15433987 Score: 205
Period size: 50 Copynumber: 5.5 Consensus size: 49
15433702 GCAGTGGAGC
* * *
15433712 AGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCC-GACATTGCAGTTAAAA
* ** ** ** *
15433762 AGATTAAAGCTACAACAGCGAATCTTATTTCCC-AGGTGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCGACAT--TGCAGTTAAAA
* * * * *
15433812 AGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCGA-CATTGCAGTTAAAA
* ** ** ** *
15433862 AGATTAAAGCTACAACAGCGAATCTTATTTCCC-AGGTGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCGACAT--TGCAGTTAAAA
* * * * *
15433912 AGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCGA-CATTGCAGTTAAAA
*
15433962 AGATTAAAGCTACAACAGCGAATCTT
1 AGATTAAAGCCACAACAGCGAATCTT
15433988 ATTTCCCAGG
Statistics
Matches: 166, Mismatches: 52, Indels: 16
0.71 0.22 0.07
Matches are distributed among these distances:
48 3 0.02
49 1 0.01
50 158 0.95
51 2 0.01
52 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (49 bp):
AGATTAAAGCCACAACAGCGAATCTTGCTTCCCGACATTGCAGTTAAAA
Found at i:15433864 original size:100 final size:100
Alignment explanation
Indices: 15433700--15434031 Score: 585
Period size: 100 Copynumber: 3.3 Consensus size: 100
15433690 ATCCCAGTCA
* * * * * * *
15433700 GTGCAGTGGAGCAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGA-CATTGCAGTTAAAAAG
1 GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCC-CACCATTGCAGTTAAAAAG
15433764 ATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
65 ATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
15433800 GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGA
1 GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGA
15433865 TTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
66 TTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
15433900 GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGA
1 GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGA
15433965 TTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
66 TTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
15434000 GTGCAGTGGAACAGATTAAAGCCACATCAGTG
1 GTGCAGTGGAACAGATTAAAGCCACATCAGTG
15434032 AATCTTGATT
Statistics
Matches: 224, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
99 1 0.00
100 223 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
GTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGA
TTAAAGCTACAACAGCGAATCTTATTTCCCAGGTG
Found at i:15434005 original size:50 final size:50
Alignment explanation
Indices: 15433751--15434037 Score: 240
Period size: 50 Copynumber: 5.7 Consensus size: 50
15433741 TCCCTGACAT
* *
15433751 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGG
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTTATTTCCCAGGTGG
* * * * * * * * **
15433801 TGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCAT--
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTT-ATTTCCCA-GGTGG
* *
15433851 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGG
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTTATTTCCCAGGTGG
* * * * * * * * **
15433901 TGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCAT--
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTT-ATTTCCCA-GGTGG
* *
15433951 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGG
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTTATTTCCCAGGTGG
* * * *
15434001 TGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTT
1 TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTT
15434038 GATTAAGCTA
Statistics
Matches: 175, Mismatches: 54, Indels: 16
0.71 0.22 0.07
Matches are distributed among these distances:
48 2 0.01
49 12 0.07
50 147 0.84
51 12 0.07
52 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCAGTGAAAAAGATTAAAGCCACAACAGCGAATCTTATTTCCCAGGTGG
Found at i:15434058 original size:74 final size:75
Alignment explanation
Indices: 15433963--15434112 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 75
15433953 CAGTTAAAAA
* * * * *
15433963 GATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGGTGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
15434028 AGTGAATCTT
66 AGTGAATCTT
15434038 GATT-AAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
15434102 AGTGAATCTT
66 AGTGAATCTT
15434112 G
1 G
15434113 CTTCCCCAAC
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 66 0.94
75 4 0.06
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (75 bp):
GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
AGTGAATCTT
Found at i:15434109 original size:50 final size:51
Alignment explanation
Indices: 15434055--15434361 Score: 272
Period size: 50 Copynumber: 6.1 Consensus size: 51
15434045 CTACAACAAC
* * *
15434055 GAATCTTAC-TCCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACATCAGT
1 GAATCTTACTTCCCCAGAC-ATTGCAGTGAAAAAGATTAAAGCCACATCAGT
* * * *
15434105 GAATCTTGCTTCCCCA-ACATTGCAGTTAAAAAGATTAAAGCTACAACAGT
1 GAATCTTACTTCCCCAGACATTGCAGTGAAAAAGATTAAAGCCACATCAGT
* * * * ** * * *
15434155 AAATCTTACTT-CTCTGGCGGTGCAGTGGAACAGATTAAAGCCATATCAGT
1 GAATCTTACTTCCCCAGACATTGCAGTGAAAAAGATTAAAGCCACATCAGT
* * * * * *
15434205 GAATCTTGCTTCCCC-GACATTGCAGTTAAAAAGGTTAAAGCTACAACAGC
1 GAATCTTACTTCCCCAGACATTGCAGTGAAAAAGATTAAAGCCACATCAGT
* * * *
15434255 GAATCTTAC-TCCCCA-AGCGA-TGCAGTGGAACAGATTAAAACCACATCGGT
1 GAATCTTACTTCCCCAGA-C-ATTGCAGTGAAAAAGATTAAAGCCACATCAGT
* *
15434305 GAATCTTACTTCCCCA-ACATTGCAGTTAAAAAGATTAAAGCCACATCGGT
1 GAATCTTACTTCCCCAGACATTGCAGTGAAAAAGATTAAAGCCACATCAGT
15434355 GAATCTT
1 GAATCTT
15434362 GATTAAAGCT
Statistics
Matches: 200, Mismatches: 48, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
49 10 0.05
50 174 0.87
51 16 0.08
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (51 bp):
GAATCTTACTTCCCCAGACATTGCAGTGAAAAAGATTAAAGCCACATCAGT
Found at i:15434162 original size:174 final size:175
Alignment explanation
Indices: 15433863--15434212 Score: 558
Period size: 174 Copynumber: 2.0 Consensus size: 175
15433853 CAGTTAAAAA
* * * * *
15433863 GATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGGTGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
* * * * *
15433928 AGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTC
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
*
15433993 CCAGGTGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTT
131 CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTT
15434038 GATT-AAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
*
15434102 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGTAAATCTTACTTC
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
* * *
15434167 TCTGGCGGTGCAGTGGAACAGATTAAAGCCATATCAGTGAATCTT
131 CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTT
15434212 G
1 G
15434213 CTTCCCCGAC
Statistics
Matches: 160, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
174 156 0.98
175 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (175 bp):
GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTT
Found at i:15434215 original size:100 final size:100
Alignment explanation
Indices: 15434038--15434345 Score: 483
Period size: 100 Copynumber: 3.1 Consensus size: 100
15434028 AGTGAATCTT
*
15434038 GATT-AAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
15434102 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAA
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAA
** * * * * *
15434137 GATTAAAGCTACAACAGTAAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAAAGCCATATC
1 GATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
*
15434202 AGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAA
* * *
15434237 GGTTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACCACATC
1 GATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
* *
15434302 GGTGAATCTTACTTCCCCAACATTGCAGTTAAAAA
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAA
15434337 GATTAAAGC
1 GATTAAAGC
15434346 CACATCGGTG
Statistics
Matches: 185, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
99 4 0.02
100 181 0.98
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (100 bp):
GATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAA
Found at i:15434257 original size:274 final size:275
Alignment explanation
Indices: 15433763--15434311 Score: 850
Period size: 274 Copynumber: 2.0 Consensus size: 275
15433753 CAGTTAAAAA
* * * * *
15433763 GATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGGTGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
* * * * *
15433828 AGTGGATTTTGCTTCCCCACCATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTC
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
* * *
15433893 CCAGGTGGTGCAGTGGAACAGATTAAAGCCACATCAGTGGATTTTGCTTCCCCACCATTGCAGTT
131 CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCACCATTGCAGTT
* * * * * *
15433958 AAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCAGGTGGTGCAGTGGAACAGATTAAAGCC
196 AAAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACC
15434023 ACATCAGTGAATCTT
261 ACATCAGTGAATCTT
15434038 GATT-AAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
1 GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
*
15434102 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGTAAATCTTACTTC
66 AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
* * *
15434167 TCTGGCGGTGCAGTGGAACAGATTAAAGCCATATCAGTGAATCTTGCTTCCCCGA-CATTGCAGT
131 CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCC-ACCATTGCAGT
*
15434231 TAAAAAGGTTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAAC
195 TAAAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAAC
*
15434296 CACATCGGTGAATCTT
260 CACATCAGTGAATCTT
15434312 ACTTCCCCAA
Statistics
Matches: 248, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
274 243 0.98
275 5 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (275 bp):
GATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATC
AGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAGCAAATCTTACTTC
CCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCACCATTGCAGTT
AAAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACC
ACATCAGTGAATCTT
Found at i:15434365 original size:25 final size:25
Alignment explanation
Indices: 15434337--15434386 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
15434327 CAGTTAAAAA
* *
15434337 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACGGCGAATCTT
*
15434362 GATTAAAGCTACAACGGCGAATCTT
1 GATTAAAGCCACAACGGCGAATCTT
15434387 ACTCCCCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACGGCGAATCTT
Found at i:15434461 original size:125 final size:125
Alignment explanation
Indices: 15434239--15434486 Score: 372
Period size: 125 Copynumber: 2.0 Consensus size: 125
15434229 GTTAAAAAGG
15434239 TTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACCACATCGG
1 TTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACCACATCGG
* * *
15434304 TGAATCTTACTTCCCCAACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTTGA
66 TGAATCTTACTTCCCCAACATTACAGTTAAAAAGATTAAAGCCACAACGGCGAATCTTGA
* * * * *
15434364 TTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAATAGATTAAAGCCACAAT-G
1 TTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACCAC-ATCG
* ** *
15434428 GTGAATCTTGCTTCCCTTACATTACAGTTAAAAAGATTAAAGCTACAACGGCGAATCTT
65 GTGAATCTTACTTCCCCAACATTACAGTTAAAAAGATTAAAGCCACAACGGCGAATCTT
15434487 ACTTTCCAAG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
125 108 0.98
126 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (125 bp):
TTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATGCAGTGGAACAGATTAAAACCACATCGG
TGAATCTTACTTCCCCAACATTACAGTTAAAAAGATTAAAGCCACAACGGCGAATCTTGA
Found at i:15434515 original size:50 final size:49
Alignment explanation
Indices: 15434362--15434542 Score: 166
Period size: 50 Copynumber: 3.6 Consensus size: 49
15434352 GGTGAATCTT
* *
15434362 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAATA
1 GATTAAAGCTACAACGGCGAATCTTACTTCCCAAGCGGTGTAGT-GAAAA
* * * * * ** ** *
15434412 GATTAAAGCCACAATGGTGAATCTTGCTTCCCTTA-CATTACAGTTAAAAA
1 GATTAAAGCTACAACGGCGAATCTTACTTCCC-AAGCGGTGTAG-TGAAAA
* *
15434462 GATTAAAGCTACAACGGCGAATCTTACTTTCCAAGCGGTGTAGATGAACA
1 GATTAAAGCTACAACGGCGAATCTTACTTCCCAAGCGGTGTAG-TGAAAA
* * *
15434512 GATTGAAGCTATAATGGCGAATCTTACTTCC
1 GATTAAAGCTACAACGGCGAATCTTACTTCC
15434543 TCGACTTCAC
Statistics
Matches: 99, Mismatches: 29, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
49 1 0.01
50 96 0.97
51 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (49 bp):
GATTAAAGCTACAACGGCGAATCTTACTTCCCAAGCGGTGTAGTGAAAA
Found at i:15434535 original size:100 final size:100
Alignment explanation
Indices: 15434362--15434542 Score: 274
Period size: 100 Copynumber: 1.8 Consensus size: 100
15434352 GGTGAATCTT
*
15434362 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAATAGATTAAAGCCACAAT
1 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAACAGATTAAAGCCACAAT
* *
15434427 GGTGAATCTTGCTTCCCTTACATTACAGTTAAAAA
66 GGCGAATCTTACTTCCCTTACATTACAGTTAAAAA
** * * *
15434462 GATTAAAGCTACAACGGCGAATCTTACTTTCCAAGCGGTGTAGAT-GAACAGATTGAAGCTATAA
1 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAG-TGGAACAGATTAAAGCCACAA
15434526 TGGCGAATCTTACTTCC
65 TGGCGAATCTTACTTCC
15434543 TCGACTTCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 71 0.99
101 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (100 bp):
GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAACAGATTAAAGCCACAAT
GGCGAATCTTACTTCCCTTACATTACAGTTAAAAA
Found at i:15434536 original size:225 final size:225
Alignment explanation
Indices: 15434137--15434542 Score: 539
Period size: 225 Copynumber: 1.8 Consensus size: 225
15434127 CAGTTAAAAA
* * * ** *
15434137 GATTAAAGCTACAACAGTAAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAAAGCCATATC
1 GATTAAAGCTACAACAGCAAATCTTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCAAATC
* *
15434202 AGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGGTTAAAGCTACAACAGCGAATCTTACTCC
66 AGTGAATCTTGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTCC
* *
15434267 CCAAGCGATGCAGTGGAACAGATTAAAACCACATCGGTGAATCTTACTTCCCCAACATTGCAGTT
131 CCAAGCGATGCAGTGGAACAGATTAAAACCAAATCGGCGAATCTTACTTCCCCAACATTGCAGTT
15434332 AAAAAGATTAAAGCCACATCGGTGAATCTT
196 AAAAAGATTAAAGCCACATCGGTGAATCTT
* * * *
15434362 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAATAGATTAAAGCCACAAT
1 GATTAAAGCTACAACAGCAAATCTTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCA-AAT
* ** * *
15434427 -GGTGAATCTTGCTTCCCTTACATTACAGTTAAAAAGATTAAAGCTACAACGGCGAATCTTACTT
65 CAGTGAATCTTGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTC
* * * * * *
15434491 TCCAAGCGGTGTAGAT-GAACAGATTGAAGCTATAAT-GGCGAATCTTACTTCC
130 CCCAAGCGATGCAG-TGGAACAGATTAAAACCA-AATCGGCGAATCTTACTTCC
15434543 TCGACTTCAC
Statistics
Matches: 153, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
225 148 0.97
226 5 0.03
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (225 bp):
GATTAAAGCTACAACAGCAAATCTTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCAAATC
AGTGAATCTTGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTCC
CCAAGCGATGCAGTGGAACAGATTAAAACCAAATCGGCGAATCTTACTTCCCCAACATTGCAGTT
AAAAAGATTAAAGCCACATCGGTGAATCTT
Found at i:15434565 original size:100 final size:100
Alignment explanation
Indices: 15434362--15434569 Score: 260
Period size: 100 Copynumber: 2.1 Consensus size: 100
15434352 GGTGAATCTT
*
15434362 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAATAGATTAAAGCCACAAT
1 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAACAGATTAAAGCCACAAT
* * * *
15434427 GGTGAATCTTGCTTCCCTTACATTACAGTTAAAAA
66 GGCGAATCTTACTTCCCTGACATTACAGCTAAAAA
** * * *
15434462 GATTAAAGCTACAACGGCGAATCTTACTTTCCAAGCGGTGTAGAT-GAACAGATTGAAGCTATAA
1 GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAG-TGGAACAGATTAAAGCCACAA
* *
15434526 TGGCGAATCTTACTT-CCTCGAC-TTCACGGCTAAACA
65 TGGCGAATCTTACTTCCCT-GACATT-ACAGCTAAAAA
15434562 GATTAAAG
1 GATTAAAG
15434570 TTACGAGTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
99 5 0.05
100 87 0.94
101 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (100 bp):
GATTAAAGCTACAACGGCGAATCTTACTCCCCAAGCGGTGTAGTGGAACAGATTAAAGCCACAAT
GGCGAATCTTACTTCCCTGACATTACAGCTAAAAA
Found at i:15435284 original size:11 final size:11
Alignment explanation
Indices: 15435270--15435295 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15435260 TTTTATATTA
15435270 TTTTTGTTTTC
1 TTTTTGTTTTC
15435281 TTTTTGTTTTC
1 TTTTTGTTTTC
15435292 TTTT
1 TTTT
15435296 CCTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTGTTTTC
Found at i:15435308 original size:17 final size:16
Alignment explanation
Indices: 15435270--15435308 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
15435260 TTTTATATTA
*
15435270 TTTTTGTTTTCTTTTT
1 TTTTTCTTTTCTTTTT
*
15435286 GTTTTCTTTTCCTTTTT
1 TTTTTCTTTT-CTTTTT
15435303 TTTTTC
1 TTTTTC
15435309 ATGGTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTT
Found at i:15442164 original size:110 final size:110
Alignment explanation
Indices: 15441967--15442230 Score: 521
Period size: 110 Copynumber: 2.4 Consensus size: 110
15441957 CCATCAACTG
15441967 CCCA-AAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTCGCATAACGACTGTTGATTGG
1 CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTCGCATAACGACTGTTGATTGG
15442031 GACCTCCACTTAGACTTTGACCCGTGATCGTATTAAGCATTGTCA
66 GACCTCCACTTAGACTTTGACCCGTGATCGTATTAAGCATTGTCA
15442076 CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTCGCATAACGACTGTTGATTGG
1 CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTCGCATAACGACTGTTGATTGG
15442141 GACCTCCACTTAGACTTTGACCCGTGATCGTATTAAGCATTGTCA
66 GACCTCCACTTAGACTTTGACCCGTGATCGTATTAAGCATTGTCA
15442186 CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTC
1 CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTC
15442231 CTATTGCAGG
Statistics
Matches: 154, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
109 4 0.03
110 150 0.97
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (110 bp):
CCCAGAAACTTGACTTCCATAGAATGGGTTTCTGAGGTAATGGTCGCATAACGACTGTTGATTGG
GACCTCCACTTAGACTTTGACCCGTGATCGTATTAAGCATTGTCA
Found at i:15444693 original size:27 final size:27
Alignment explanation
Indices: 15444655--15444885 Score: 207
Period size: 27 Copynumber: 8.6 Consensus size: 27
15444645 CCTAATATTT
* *
15444655 GTAAAATAACCGTAATACCCCTTTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
15444682 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
15444709 GTAAAATGACTGAAAAACCCC-ATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* ** * *
15444735 GTAAAATAATTGTAATGA-CCTTGTAGG
1 GTAAAATGACCGTAAT-ACCCCTATAGG
* * * * *
15444762 GTAAAATGATCGAAAAACCCCTGTAGA
1 GTAAAATGACCGTAATACCCCTATAGG
*
15444789 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
15444816 GTAAAATGACCGTAATA-CCCTCATAGG
1 GTAAAATGACCGTAATACCCCT-ATAGG
* * * * *
15444843 GTTAAATGATCGAAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
15444870 GTAAAATGACCGTAAT
1 GTAAAATGACCGTAAT
15444886 GCCCATGAAG
Statistics
Matches: 162, Mismatches: 37, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
26 22 0.14
27 136 0.84
28 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:15444850 original size:54 final size:54
Alignment explanation
Indices: 15444655--15444885 Score: 241
Period size: 54 Copynumber: 4.3 Consensus size: 54
15444645 CCTAATATTT
* *
15444655 GTAAAATAACCGTAATACCCCTTTAGGGTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGG
* * * * * ** * *
15444709 GTAAAATGACTGAAAAACCCC-ATAAGGTAAAATAATTGTAATGACCTTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGG
* * * * * *
15444762 GTAAAATGATCGAAAAACCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGG
* * * * *
15444816 GTAAAATGACCGTAATA-CCCTCATAGGGTTAAATGATCGAAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCT-ATAGGGTAAAATGACCGTAATGCCCCTGTAGG
15444870 GTAAAATGACCGTAAT
1 GTAAAATGACCGTAAT
15444886 GCCCATGAAG
Statistics
Matches: 142, Mismatches: 33, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
53 48 0.34
54 94 0.66
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (54 bp):
GTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGG
Found at i:15444850 original size:81 final size:81
Alignment explanation
Indices: 15444655--15444889 Score: 262
Period size: 81 Copynumber: 2.9 Consensus size: 81
15444645 CCTAATATTT
* * * * *
15444655 GTAAAATAACCGTAATACCC-CTTTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGAC
1 GTAAAATAACCGTAATACCCTC-ATAGGGTAAAATGATCGAAATACCCCTGTAGAGTAAAATGAC
* * ** *
15444719 TGAAAAACCCC-ATAAG
65 CGTAATGCCCCTATAGG
** ** *
15444735 GTAAAATAATTGTAATGA-CCTTGTAGGGTAAAATGATCGAAAAACCCCTGTAGAGTAAAATGAC
1 GTAAAATAACCGTAAT-ACCCTCATAGGGTAAAATGATCGAAATACCCCTGTAGAGTAAAATGAC
15444799 CGTAATGCCCCTATAGG
65 CGTAATGCCCCTATAGG
* *
15444816 GTAAAATGACCGTAATACCCTCATAGGGTTAAATGATCGAAATACCCCTGTA-AGGTAAAATGAC
1 GTAAAATAACCGTAATACCCTCATAGGGTAAAATGATCGAAATACCCCTGTAGA-GTAAAATGAC
15444880 CGTAATGCCC
65 CGTAATGCCC
15444890 ATGAAGGGTA
Statistics
Matches: 129, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
80 61 0.47
81 68 0.53
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (81 bp):
GTAAAATAACCGTAATACCCTCATAGGGTAAAATGATCGAAATACCCCTGTAGAGTAAAATGACC
GTAATGCCCCTATAGG
Found at i:15444898 original size:54 final size:53
Alignment explanation
Indices: 15444792--15444905 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 53
15444782 CTGTAGAGTA
* * *
15444792 AAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCTCATAGGGTT
1 AAATGACCGAAATACCCCTATAAGGTAAAATGACCGTAATACCCTCATAGGG-T
* * * *
15444846 AAATGATCGAAATACCCCTGTAAGGTAAAATGACCGTAATGCCCATGA-AGGGT
1 AAATGACCGAAATACCCCTATAAGGTAAAATGACCGTAATACCC-TCATAGGGT
15444899 AAATGAC
1 AAATGAC
15444906 TATTTTGCGT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 7 0.14
54 42 0.82
55 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (53 bp):
AAATGACCGAAATACCCCTATAAGGTAAAATGACCGTAATACCCTCATAGGGT
Found at i:15444988 original size:24 final size:24
Alignment explanation
Indices: 15444924--15445020 Score: 106
Period size: 24 Copynumber: 4.0 Consensus size: 24
15444914 GTCTCAAGTG
* *
15444924 TAAATGATTGATTTGT-TCGTGATG
1 TAAATGACTGATTTGTCT-GTGATT
* *
15444948 TAAATGGCTGATTTGTCTATGATT
1 TAAATGACTGATTTGTCTGTGATT
15444972 TAAATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
*** *
15444996 GGTATGATTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
15445020 T
1 T
15445021 GTATGACTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 60 0.98
25 1 0.02
ACGTcount: A:0.23, C:0.06, G:0.24, T:0.47
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATT
Found at i:15445024 original size:24 final size:24
Alignment explanation
Indices: 15444955--15445028 Score: 103
Period size: 24 Copynumber: 3.1 Consensus size: 24
15444945 ATGTAAATGG
* **
15444955 CTGATTTGTCTATGATTTAAATGA
1 CTGATTTGTCTGTGATTTGTATGA
*
15444979 CTGATTTGTCTGTGATTGGTATGA
1 CTGATTTGTCTGTGATTTGTATGA
*
15445003 TTGATTTGTCTGTGATTTGTATGA
1 CTGATTTGTCTGTGATTTGTATGA
15445027 CT
1 CT
15445029 AATTCTGAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (24 bp):
CTGATTTGTCTGTGATTTGTATGA
Found at i:15445331 original size:32 final size:32
Alignment explanation
Indices: 15445204--15445328 Score: 169
Period size: 32 Copynumber: 3.9 Consensus size: 32
15445194 GTTGCGATGC
*
15445204 TACTGATGGCTTTGTGTCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* *
15445236 TACTGATGGCTTTTTACCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* * **
15445268 TACTGATGGCTATGTGCCGATCATATCACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* *
15445300 TACTGATGGCTTTGTGCCAATCATTTTAC
1 TACTGATGGCTTTGTGCCGATCATATTAC
15445329 TGTACTTATG
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 80 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCAT
Found at i:15449854 original size:22 final size:24
Alignment explanation
Indices: 15449806--15449854 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
15449796 TCAAAACAAT
*
15449806 AAACCAATAAAATCCCTAATTCCA
1 AAACCAATAAAATCCCTAATCCCA
15449830 AAACCAA-AAAA-CCCTAA-CCCTA
1 AAACCAATAAAATCCCTAATCCC-A
15449852 AAA
1 AAA
15449855 AACCATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 2 0.09
22 10 0.43
23 4 0.17
24 7 0.30
ACGTcount: A:0.55, C:0.31, G:0.00, T:0.14
Consensus pattern (24 bp):
AAACCAATAAAATCCCTAATCCCA
Found at i:15451066 original size:21 final size:20
Alignment explanation
Indices: 15451042--15451087 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
15451032 TGAAATGCAA
15451042 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
15451063 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
15451083 T-AACC
1 TCAACC
15451088 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:15455345 original size:30 final size:30
Alignment explanation
Indices: 15455285--15455346 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
15455275 GCTTTTTGAA
* * *
15455285 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAAATTTT
15455315 AATATTTACAAAAAGA-GCAACCAAAATTTT
1 AATATTTACAAAAAGAGGC-ACCAAAATTTT
15455345 AA
1 AA
15455347 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAAATTTT
Found at i:15464737 original size:11 final size:11
Alignment explanation
Indices: 15464721--15464746 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15464711 GTTTATCAAC
15464721 TTTTTTACGTT
1 TTTTTTACGTT
15464732 TTTTTTACGTT
1 TTTTTTACGTT
15464743 TTTT
1 TTTT
15464747 ATAATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTTTACGTT
Found at i:15469302 original size:14 final size:14
Alignment explanation
Indices: 15469283--15469309 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15469273 CATTTCTTGG
15469283 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
15469297 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
15469310 AGTGGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:15470561 original size:34 final size:34
Alignment explanation
Indices: 15470518--15470586 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
15470508 CAAAGCCTCG
15470518 TAAGGTGCCATCTTAATACTTGATTGAAAACTAT
1 TAAGGTGCCATCTTAATACTTGATTGAAAACTAT
15470552 TAAGGTGCCATCTTAATACTTGATTGAAAACTAT
1 TAAGGTGCCATCTTAATACTTGATTGAAAACTAT
15470586 T
1 T
15470587 GTTGTAAGCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36
Consensus pattern (34 bp):
TAAGGTGCCATCTTAATACTTGATTGAAAACTAT
Found at i:15476178 original size:39 final size:41
Alignment explanation
Indices: 15476064--15476247 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
15476054 GCTCCTCGTT
* * *
15476064 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
15476104 CAAATGCCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
15476144 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
15476183 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
15476224 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15476248 CATCATTCAA
Statistics
Matches: 128, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
38 2 0.02
39 52 0.41
40 63 0.49
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:15476208 original size:79 final size:82
Alignment explanation
Indices: 15476064--15476247 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 82
15476054 GCTCCTCGTT
* * *
15476064 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
15476128 GAT-TTAGT-A-TCTCGCA
66 GATATT-GTCACT-TAGCA
**
15476144 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
15476205 CGGATATTGTCACTTAGCA
64 CGGATATTGTCACTTAGCA
15476224 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15476248 CATCATTCAA
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
78 14 0.15
79 53 0.58
80 23 0.25
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTCACTTAGCA
Found at i:15476837 original size:50 final size:50
Alignment explanation
Indices: 15476780--15476876 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
15476770 CATGTCTATG
*
15476780 TTGGGGCCGATTGCAACACTTCATACATTCTACAAGTATGGTCACTTATT
1 TTGGGGCCGATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATT
*
15476830 TTGGGGCCGATTTCAACACTTAATACATTCTACAAGTATGGTCACTT
1 TTGGGGCCGATTGCAACACTTAATACATTCTACAAGTATGGTCACTT
15476877 GTATTGACTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (50 bp):
TTGGGGCCGATTGCAACACTTAATACATTCTACAAGTATGGTCACTTATT
Found at i:15484186 original size:40 final size:40
Alignment explanation
Indices: 15484142--15484403 Score: 292
Period size: 39 Copynumber: 6.7 Consensus size: 40
15484132 GCTCCTCGTT
* *
15484142 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * * *
15484182 CAAATGCCTTCGGGACATAACACGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
15484222 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
15484261 CTAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
15484300 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
15484339 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
15484380 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15484404 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 17, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 121 0.61
40 63 0.32
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:15495404 original size:43 final size:45
Alignment explanation
Indices: 15495343--15495460 Score: 177
Period size: 47 Copynumber: 2.6 Consensus size: 45
15495333 GCATTGGCAC
*
15495343 TAAGACAAGGATACCATGTAAGACCATGTTTGG-A-GTCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAATGCCATTTGG
15495386 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGCCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-A-ATGCCATTTGG
* *
15495433 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
15495461 CTATGGCATG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
43 33 0.49
46 1 0.01
47 34 0.50
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (45 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAATGCCATTTGG
Found at i:15495503 original size:54 final size:54
Alignment explanation
Indices: 15495439--15495622 Score: 176
Period size: 54 Copynumber: 3.4 Consensus size: 54
15495429 TTGGTAAGAT
* * *
15495439 AAGGATATCATGTAAGACCATGCTATGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCTAAGGCATGGAATTGATGAGTTCTATAAGGC
* * * * * *
15495493 AAGGAAATCATATAAGACCATG-TCAAGACATGGTATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCT-AAGGCATGGAATTGATGAGTT-CTATAAGG-C
* * * * * *
15495549 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAAGC
1 AAGGATACCATGTAAGACCATGCTAAGGCATGGAATTGATGAGTTCTATAAGGC
*
15495601 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
15495623 TCAAGACATG
Statistics
Matches: 105, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.04
53 21 0.20
54 38 0.36
55 38 0.36
56 4 0.04
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCTAAGGCATGGAATTGATGAGTTCTATAAGGC
Found at i:15495633 original size:53 final size:55
Alignment explanation
Indices: 15495505--15495645 Score: 153
Period size: 53 Copynumber: 2.6 Consensus size: 55
15495495 GGAAATCATA
* * * * *
15495505 TAAGACCATGTCAAGACATGGTATTGATGAGTTACTATAAGGAAAAGGTCCCATG
1 TAAGACCATGTCAAGACATGGCATTGGTGAGTTACTATAAAGAAAAGGTACCACG
* * * *
15495560 TAAGACCATGCCAAGGCATGGCATTGGTGA-TTTC-ATAAAG-CAAGGATACCACG
1 TAAGACCATGTCAAGACATGGCATTGGTGAGTTACTATAAAGAAAAGG-TACCACG
* *
15495613 TAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGACCATGTCAAGACATGGCATTGGTGAGTT
15495646 CAAAAAGGAA
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
52 4 0.06
53 36 0.51
54 5 0.07
55 26 0.37
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (55 bp):
TAAGACCATGTCAAGACATGGCATTGGTGAGTTACTATAAAGAAAAGGTACCACG
Found at i:15495661 original size:108 final size:109
Alignment explanation
Indices: 15495447--15495657 Score: 255
Period size: 108 Copynumber: 2.0 Consensus size: 109
15495437 ATAAGGATAT
* * * * *
15495447 CATGTAAGACCATGCTATGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAATCATATAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAAGCAAGGAAACCACATAAGACC
* * * * *
15495512 ATGTCAAGACATGGTATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* * * * * *
15495556 CATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAAGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAAGCAAGGAAACCACATAAGACC
*
15495620 ATGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAA
66 ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAA
15495658 AGGTTCCCGA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
107 10 0.12
108 43 0.51
109 32 0.38
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAAGCAAGGAAACCACATAAGACC
ATGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:15497058 original size:27 final size:27
Alignment explanation
Indices: 15496913--15497054 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
15496903 TGGATAAGTT
* *
15496913 GTAGAACTACCGAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* * * *
15496940 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
*
15496967 GTAGAGATACCGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
15496994 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* * *
15497021 GTAGAAATACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGG
15497048 GTA-AAAT
1 GTAGAAAT
15497055 TACCATTTTA
Statistics
Matches: 101, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.04
27 97 0.96
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTGTAGG
Found at i:15497717 original size:27 final size:26
Alignment explanation
Indices: 15497673--15497724 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
15497663 CTCGTTACAA
*
15497673 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
15497700 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
15497725 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:15507220 original size:47 final size:47
Alignment explanation
Indices: 15507169--15507453 Score: 455
Period size: 47 Copynumber: 6.1 Consensus size: 47
15507159 TTAGGATTTT
*
15507169 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
15507216 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
15507263 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
15507310 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCC-AGATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA-ATGGCCA
* * *
15507357 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
15507404 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
15507451 ATG
1 ATG
15507454 CGAAACGTGT
Statistics
Matches: 224, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 222 0.99
48 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:15507516 original size:46 final size:46
Alignment explanation
Indices: 15507427--15507517 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
15507417 GAACATGAAT
* * * *
15507427 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
15507473 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
15507518 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:15507524 original size:141 final size:140
Alignment explanation
Indices: 15507180--15507502 Score: 411
Period size: 141 Copynumber: 2.3 Consensus size: 140
15507170 TGTGATGGAT
* * * * *
15507180 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* * ** *
15507245 GATAAGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
* *
15507310 ATGTGATGAAT
131 ATGCGA-GAAC
* *
15507321 GTGAACATGCGTATGTGTGATAAGGCCAGATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* *
15507386 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
15507451 ATGCGA-AAC
131 ATGCGAGAAC
* *
15507460 GTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
15507503 GATATGTACG
Statistics
Matches: 160, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
139 5 0.03
140 20 0.12
141 125 0.78
142 10 0.06
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.25
Consensus pattern (140 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:15507805 original size:37 final size:37
Alignment explanation
Indices: 15507663--15507804 Score: 230
Period size: 37 Copynumber: 3.8 Consensus size: 37
15507653 AATATATTCT
*
15507663 GGGTAAGACCCGATGACTACGTGTGGATATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
15507700 GGGTAAGTCCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
15507737 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
15507774 GGGTAAGACCCGATAACTTCATGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
15507805 TCGTCTGGGC
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:15509440 original size:40 final size:40
Alignment explanation
Indices: 15508918--15509428 Score: 887
Period size: 40 Copynumber: 12.8 Consensus size: 40
15508908 TTGAAAGAGT
15508918 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15508958 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15508998 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509038 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509078 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509118 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509158 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509198 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509238 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
15509278 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
* * * *
15509318 GTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
* * * ** * * *
15509358 ATGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTG
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
* * *
15509398 GTGTTATATCCGGGCTAGGTCCCGAGGAGCA
1 GTGATATATCTGGGCTAAGTCCCGAGGAGCA
15509429 ATCATGCTGG
Statistics
Matches: 451, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 451 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
GTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTA
Found at i:15510102 original size:40 final size:40
Alignment explanation
Indices: 15510047--15510163 Score: 207
Period size: 40 Copynumber: 2.9 Consensus size: 40
15510037 GAGAATTGAG
* * *
15510047 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
15510087 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
15510127 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGT
1 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGT
15510164 TGAAGTTAGA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:15513481 original size:47 final size:47
Alignment explanation
Indices: 15513430--15513626 Score: 250
Period size: 47 Copynumber: 4.1 Consensus size: 47
15513420 TTAGGATTTT
* * *
15513430 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
15513477 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATAT--GTGATAAGGCCGAATGGCCA
*
15513530 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
15513577 ATGTGATAAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
15513624 ATG
1 ATG
15513627 CGAAACGTGT
Statistics
Matches: 131, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
47 79 0.60
48 1 0.01
49 8 0.06
51 6 0.05
52 1 0.01
53 36 0.27
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:15521239 original size:16 final size:17
Alignment explanation
Indices: 15521220--15521254 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15521210 ATTCAATCTG
*
15521220 TAATTA-TTAACATACA
1 TAATTATTTAAAATACA
15521236 TAATTATTTAAAATACA
1 TAATTATTTAAAATACA
15521253 TA
1 TA
15521255 TTACCCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (17 bp):
TAATTATTTAAAATACA
Found at i:15523179 original size:25 final size:22
Alignment explanation
Indices: 15523144--15523198 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 22
15523134 TCAAATTTCG
15523144 TTATATATATATGCATGCATACATTT
1 TTATA-ATATATGCA--CATA-ATTT
*
15523170 TTATAATATATGCACATATTTT
1 TTATAATATATGCACATAATTT
15523192 TTATAAT
1 TTATAAT
15523199 TTATATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 10 0.36
23 4 0.14
25 9 0.32
26 5 0.18
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
TTATAATATATGCACATAATTT
Found at i:15523758 original size:73 final size:72
Alignment explanation
Indices: 15523648--15523792 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 72
15523638 TCTTTTCCAA
* ** *
15523648 CTCAAGTTTTAAACGATCTCGAGCATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACAATCTCGAAAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGAT-CC
15523713 TTTTTTTT
65 TTTTTTTT
15523721 CTCAAGTTTTAAACAATCTCGAAAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCT
1 CTCAAGTTTTAAACAATCTCGAAAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCT
15523786 TTTTTTT
66 TTTTTTT
15523793 AAATCCGAGA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
72 10 0.15
73 58 0.85
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (72 bp):
CTCAAGTTTTAAACAATCTCGAAAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCT
TTTTTTT
Found at i:15528288 original size:11 final size:11
Alignment explanation
Indices: 15528274--15528340 Score: 71
Period size: 12 Copynumber: 5.6 Consensus size: 11
15528264 AAAATTATTT
15528274 AAAAAAAAAGA
1 AAAAAAAAAGA
*
15528285 AAAAAAGAAGA
1 AAAAAAAAAGA
*
15528296 AAGAAATAAAGA
1 AA-AAAAAAAGA
15528308 AGAAGAAGAAAAGA
1 A-AA-AA-AAAAGA
15528322 AAAAGAAAAAGA
1 AAAA-AAAAAGA
15528334 AAAAAAA
1 AAAAAAA
15528341 GAGGAGAGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
11 15 0.32
12 20 0.43
13 6 0.13
14 6 0.13
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:15528289 original size:8 final size:8
Alignment explanation
Indices: 15528276--15528339 Score: 60
Period size: 8 Copynumber: 7.9 Consensus size: 8
15528266 AATTATTTAA
15528276 AAAAAAAG
1 AAAAAAAG
15528284 AAAAAAAG
1 AAAAAAAG
*
15528292 -AAGAAAG
1 AAAAAAAG
*
15528299 AAATAAAG
1 AAAAAAAG
*
15528307 AAGAAGAAG
1 AA-AAAAAG
15528316 AAAAGAAA-
1 AAAA-AAAG
15528324 AAGAAAAAG
1 AA-AAAAAG
15528333 AAAAAAA
1 AAAAAAA
15528340 AGAGGAGAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
7 6 0.13
8 28 0.61
9 12 0.26
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:15528315 original size:6 final size:6
Alignment explanation
Indices: 15528286--15528337 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
15528276 AAAAAAAGAA
* * *
15528286 AAAAAG AAGAAAG AAATA- AAGAAG AAGAAG -AAAAG AAAAAG AAAAAG
1 AAAAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
15528333 AAAAA
1 AAAAA
15528338 AAAGAGGAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 7 0.18
6 26 0.67
7 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:15528320 original size:14 final size:13
Alignment explanation
Indices: 15528285--15528331 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 13
15528275 AAAAAAAAGA
15528285 AAAAAAGAAGAAAG
1 AAAAAAGAAG-AAG
15528299 AAATAAAGAAGAAG
1 AAA-AAAGAAGAAG
*
15528313 AAGAAAAGAAAAAG
1 AA-AAAAGAAGAAG
15528327 AAAAA
1 AAAAA
15528332 GAAAAAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 3 0.10
14 19 0.63
15 8 0.27
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAGAAG
Found at i:15528327 original size:17 final size:16
Alignment explanation
Indices: 15528284--15528340 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 16
15528274 AAAAAAAAAG
15528284 AAAAAAAGAAGAAAGAA
1 AAAAAAAGAAG-AAGAA
*
15528301 ATAAAGAAGAAGAAGAA
1 A-AAAAAAGAAGAAGAA
*
15528318 AAGAAAAAGAAAAAGAA
1 AA-AAAAAGAAGAAGAA
15528335 AAAAAA
1 AAAAAA
15528341 GAGGAGAGGC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 5 0.14
17 21 0.60
18 9 0.26
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (16 bp):
AAAAAAAGAAGAAGAA
Found at i:15529863 original size:72 final size:72
Alignment explanation
Indices: 15529746--15529881 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
15529736 TAGTGGAACA
** * * * *
15529746 GATTAAAGCTAAAGGTAGAGAATCTTGTTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
1 GATTAAAGCTAAAGACAGAGAATCTTATCTCCTTGGCATTACAGTGGAATAGATTAAAGCTAAAA
15529811 TGGAGCG
66 TGGAGCG
* * *
15529818 GATTAAAGCTGAAGACAGTGAATCTTATCTCTTTGGCATTACAGTGGAATAGATTAAAGCTAAA
1 GATTAAAGCTAAAGACAGAGAATCTTATCTCCTTGGCATTACAGTGGAATAGATTAAAGCTAAA
15529882 GGTAGCGAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (72 bp):
GATTAAAGCTAAAGACAGAGAATCTTATCTCCTTGGCATTACAGTGGAATAGATTAAAGCTAAAA
TGGAGCG
Found at i:15529894 original size:51 final size:52
Alignment explanation
Indices: 15529818--15530110 Score: 218
Period size: 51 Copynumber: 5.6 Consensus size: 52
15529808 AAATGGAGCG
* * * ** *
15529818 GATTAAAGCTGAAGACAGTGAATCTTATCTCTTTGGCATTACAG-TGGAATA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCTGGAACA
* * * ** * *
15529869 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTATCATTAC-GATGGAGCA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCTGGAACA
** * * * *
15529920 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTATCGTTAAAGCTGAAGTGGAGCG
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGC-----TGGAACA
* * * * *
15529977 GATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCGTTACAG-TGGAACA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCTGGAACA
* * * * *
15530028 AATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTACAGCT--AAGCA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCTGGAA-CA
* *
15530079 GATTAAAGCTGAAGGCAGCAAATCTTATCTCC
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCC
15530111 ATGTCGTTAA
Statistics
Matches: 190, Mismatches: 43, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
50 3 0.02
51 142 0.75
52 2 0.01
57 43 0.23
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (52 bp):
GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCTGGAACA
Found at i:15530088 original size:159 final size:159
Alignment explanation
Indices: 15529799--15530128 Score: 491
Period size: 159 Copynumber: 2.1 Consensus size: 159
15529789 GTGGAATAGA
* * * *
15529799 TTAAAGCTAAAATGGAGCGGATTAAAGCTGAAGACAGTGAATCTTATCTCTTTGGCATTACAGTG
1 TTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGACAGTGAATCCTATCTCCTTGGCATTACAGTG
* * * * *
15529864 GAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTATCATTACGATGGAGCAGATTAAAGC
66 GAACAAATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTAGCATTACGATGAAGCAGATTAAAGC
* *
15529929 TAAAGGCAGCGAATCTTATCTCCCTATCG
131 TAAAGGCAGCAAATCTTATCTCCATATCG
* *
15529958 TTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCGTTACAGTG
1 TTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGACAGTGAATCCTATCTCCTTGGCATTACAGTG
* *
15530023 GAACAAATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTACAGCT-AAGCAGATTAAAG
66 GAACAAATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTAGCATTAC-GATGAAGCAGATTAAAG
* *
15530087 CTGAAGGCAGCAAATCTTATCTCCATGTCG
130 CTAAAGGCAGCAAATCTTATCTCCATATCG
15530117 TTAAAGCTGAAG
1 TTAAAGCTGAAG
15530129 GCAGCGAATC
Statistics
Matches: 153, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
159 151 0.99
160 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (159 bp):
TTAAAGCTGAAGTGGAGCGGATTAAAGCTGAAGACAGTGAATCCTATCTCCTTGGCATTACAGTG
GAACAAATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTAGCATTACGATGAAGCAGATTAAAGC
TAAAGGCAGCAAATCTTATCTCCATATCG
Found at i:15530232 original size:138 final size:137
Alignment explanation
Indices: 15529979--15530340 Score: 442
Period size: 138 Copynumber: 2.6 Consensus size: 137
15529969 GTGGAGCGGA
* * * *
15529979 TTAAAGCTGAAGGCAGTGAATCCTATCTCCTTGGCGTTACAGTGGAACAAATTAAAGCTAAAGGT
1 TTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGTGTTGCAGTGGAACAAATTAAAGCTAAA-GT
* * *
15530044 AGCAAATCTTGTTTCCCTGGCATTACAGCTAAGCAGATTAAAGCTGAAGGCAGCAAATCTTATCT
65 AGCGAATCTTGTTTCCCTGGCATTACAACTAAGCAGATTAAAGCTAAAGGCAGCAAATCTTATCT
*
15530109 CCATGTCG
130 CCATGGCG
* *
15530117 TTAAAGCTGAAGGCAGCGAATCTTATCTCTTTGGTGTTGCAGTAGAACAAATTAAAGCTAAAGTT
1 TTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGTGTTGCAGTGGAACAAATTAAAGCTAAAG-T
* * **
15530182 AGCGAATCTTGTTTCCCTGGCATTTCAAC-AGAGCGGATTAAAGCTAAAGGCAGTGAATCTTATC
65 AGCGAATCTTGTTTCCCTGGCATTACAACTA-AGCAGATTAAAGCTAAAGGCAGCAAATCTTATC
*
15530246 TCCCTGGCG
129 TCCATGGCG
* * * * * * * *
15530255 TT-AAGATTG-AGAGTAGCGAATCTTATTTCCCTGATGTTGCAGCGGAACAGAGTAAAGCTAAAA
1 TTAAAG-CTGAAG-GCAGCGAATCTTATCTCCTTGGTGTTGCAGTGGAACAAATTAAAGCT-AAA
15530318 GTAGCGAATCTTGTTTCCCTGGC
63 GTAGCGAATCTTGTTTCCCTGGC
15530341 GTTATTGTGG
Statistics
Matches: 194, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
137 7 0.04
138 183 0.94
139 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (137 bp):
TTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGTGTTGCAGTGGAACAAATTAAAGCTAAAGTA
GCGAATCTTGTTTCCCTGGCATTACAACTAAGCAGATTAAAGCTAAAGGCAGCAAATCTTATCTC
CATGGCG
Found at i:15530450 original size:51 final size:51
Alignment explanation
Indices: 15530376--15530516 Score: 183
Period size: 51 Copynumber: 2.8 Consensus size: 51
15530366 CAGTGGAGTG
* *
15530376 GATTAAAGCTAAAGGCAGTGAATCATATCTCTTTGGTGTCGTAGTGGAACA
1 GATTAAAGCTAAAGGTAGTGAATCTTATCTCTTTGGTGTCGTAGTGGAACA
* * * * * * * *
15530427 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCTCTAGCGTTGTAGTGGAGCA
1 GATTAAAGCTAAAGGTAGTGAATCTTATCTCTTTGGTGTCGTAGTGGAACA
*
15530478 GATTAAAGCTAAAGGTAGTGAATCTTATCTCCTTGGTGT
1 GATTAAAGCTAAAGGTAGTGAATCTTATCTCTTTGGTGT
15530517 TAAAATTAAA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (51 bp):
GATTAAAGCTAAAGGTAGTGAATCTTATCTCTTTGGTGTCGTAGTGGAACA
Found at i:15530807 original size:131 final size:132
Alignment explanation
Indices: 15530554--15530829 Score: 448
Period size: 131 Copynumber: 2.1 Consensus size: 132
15530544 CCTTGAAGTT
* * *
15530554 GTAGTGGGGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTATGGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGC
*
15530619 CACCAGCCTTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAG
66 CACCAGCCTTATCTCTCTAAGCAGCAATGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAG
15530684 CA
131 CA
* * *
15530686 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCAAGGTAGTAGGGAAGCAGATTTAAG-
1 GTAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGC
* *
15530750 CACCAGCCTTATCT-TCCTAAGCAGCAATGGAGTAGGTTGAGGATTGTAGATCCTGTCTCCCTAA
66 CACCAGCCTTATCTCT-CTAAGCAGCAATGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAA
15530814 GCA
130 GCA
15530817 GTAGTGGAGCAGA
1 GTAGTGGAGCAGA
15530830 CTGACTAAAC
Statistics
Matches: 134, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
130 1 0.01
131 75 0.56
132 58 0.43
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGC
CACCAGCCTTATCTCTCTAAGCAGCAATGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAG
CA
Found at i:15532513 original size:21 final size:21
Alignment explanation
Indices: 15532489--15532542 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
15532479 TATTAAATTA
*
15532489 ATTAATTTTAATAGTATTATC
1 ATTATTTTTAATAGTATTATC
* * *
15532510 ATTATTTTTACTATTATTATT
1 ATTATTTTTAATAGTATTATC
15532531 ATTATTTTTAAT
1 ATTATTTTTAAT
15532543 GTTACTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTATTTTTAATAGTATTATC
Found at i:15532529 original size:3 final size:3
Alignment explanation
Indices: 15532503--15532595 Score: 53
Period size: 3 Copynumber: 30.0 Consensus size: 3
15532493 ATTTTAATAG
* * * * * * *
15532503 TAT TAT CAT TAT TTT TAC TAT TAT TAT TAT TAT TTT TAA TGT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* **
15532551 TAC TAT TAT CGT GT-T TAT TAT TAT TACT TACCT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TA--T TAT TAT TAT TAT
15532596 AATTTTTTAC
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
2 1 0.01
3 59 0.88
4 3 0.04
5 4 0.06
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15532551 original size:21 final size:21
Alignment explanation
Indices: 15532489--15532557 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
15532479 TATTAAATTA
* * * *
15532489 ATTAATTTTAATAGTATTATC
1 ATTATTTTTAATATTACTATT
* *
15532510 ATTATTTTTACTATTATTATT
1 ATTATTTTTAATATTACTATT
*
15532531 ATTATTTTTAATGTTACTATT
1 ATTATTTTTAATATTACTATT
*
15532552 ACTATT
1 ATTATT
15532558 ATCGTGTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (21 bp):
ATTATTTTTAATATTACTATT
Found at i:15532704 original size:32 final size:31
Alignment explanation
Indices: 15532661--15532721 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
15532651 TGCATACATT
*
15532661 TTTATAATATACAGACATATTTTTTTTATAA
1 TTTATAATATACAGACATATATTTTTTATAA
* *
15532692 TTTATATATATACATACTTATATTTTTTAT
1 TTTATA-ATATACAGACATATATTTTTTAT
15532722 TATATCTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (31 bp):
TTTATAATATACAGACATATATTTTTTATAA
Found at i:15532732 original size:19 final size:20
Alignment explanation
Indices: 15532686--15532746 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 20
15532676 CATATTTTTT
15532686 TTATAATTTATATATATACATAC
1 TTATAATTTATATATAT--AT-C
* *
15532709 TTATATTTTTTAT-TATATC
1 TTATAATTTATATATATATC
15532728 TTATAATTTATATATATAT
1 TTATAATTTATATATATAT
15532747 GTACATACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 12 0.36
20 7 0.21
22 3 0.09
23 11 0.33
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATAATTTATATATATATC
Found at i:15532732 original size:35 final size:31
Alignment explanation
Indices: 15532661--15532734 Score: 87
Period size: 34 Copynumber: 2.3 Consensus size: 31
15532651 TGCATACATT
15532661 TTTATAATATACAGACATATTTTTTTTATAA
1 TTTATAATATACAGACATATTTTTTTTATAA
*
15532692 TTTATATATATACATACTTATATTTTTTATTAT-A
1 TTTATA-ATATACAGAC--ATATTTTTT-TTATAA
15532726 TCTTATAAT
1 T-TTATAAT
15532735 TTATATATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
31 6 0.16
32 9 0.24
34 13 0.35
35 9 0.24
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (31 bp):
TTTATAATATACAGACATATTTTTTTTATAA
Found at i:15533263 original size:71 final size:71
Alignment explanation
Indices: 15533147--15533284 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
15533137 TTTCAAACTC
* *
15533147 AAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCCTTT
1 AAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCATTT
15533212 TTTTTT
66 TTTTTT
* * *
15533218 AAGTTTTAAACTATCTCGGGAATTAATAAAAGATCGTGTCCTAACTTACTGGGCATGATCCATTT
1 AAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCATTT
15533283 TT
66 TT
15533285 AAATCCGAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (71 bp):
AAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCATTT
TTTTTT
Found at i:15537512 original size:23 final size:23
Alignment explanation
Indices: 15537482--15537557 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
15537472 ATAAGTGCCA
*
15537482 CACTGATATGTAGCCATAGCAAC
1 CACTGATATGTAGCCATAGCTAC
* *
15537505 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCATAGCTAC
*
15537528 CACTGAAATGTAGCCGA-AGCTAC
1 CACTGATATGTAGCC-ATAGCTAC
15537551 CACTGAT
1 CACTGAT
15537558 CAATAACACT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCATAGCTAC
Found at i:15537809 original size:18 final size:17
Alignment explanation
Indices: 15537783--15537826 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
15537773 ATTTTCCTTC
15537783 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
15537800 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
15537818 CACAATTCA
1 CAC-ATTCA
15537827 TAAAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 5 0.21
18 13 0.54
19 6 0.25
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.34
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:15542725 original size:23 final size:23
Alignment explanation
Indices: 15542682--15542725 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
15542672 ATGCTAATAC
* *
15542682 CAAACCCCATGTTGGGAGCCAAA
1 CAAACCCCACGTAGGGAGCCAAA
15542705 CAAACCCCGACGTAGGG-GCCA
1 CAAACCCC-ACGTAGGGAGCCA
15542726 CCCCCAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.32, C:0.34, G:0.25, T:0.09
Consensus pattern (23 bp):
CAAACCCCACGTAGGGAGCCAAA
Found at i:15551240 original size:18 final size:18
Alignment explanation
Indices: 15551217--15551272 Score: 76
Period size: 18 Copynumber: 3.0 Consensus size: 18
15551207 AATTATGTTG
*
15551217 AAAAATCATAAAAAAATT
1 AAAAATCATAAAATAATT
*
15551235 AAAAATCATAATAATTATTT
1 AAAAATCATAA-AA-TAATT
15551255 AAAAATCATAAAATAATT
1 AAAAATCATAAAATAATT
15551273 TTTTTGGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 15 0.45
19 4 0.12
20 14 0.42
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAATCATAAAATAATT
Found at i:15551258 original size:20 final size:20
Alignment explanation
Indices: 15551204--15551265 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
15551194 TTTTTATATA
15551204 AATAATTATGTTGAAAAATCAT
1 AATAATTAT-TT-AAAAATCAT
* *
15551226 AA-AA-AAATTAAAAATCAT
1 AATAATTATTTAAAAATCAT
15551244 AATAATTATTTAAAAATCAT
1 AATAATTATTTAAAAATCAT
15551264 AA
1 AA
15551266 AATAATTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 11 0.32
19 4 0.12
20 15 0.44
21 2 0.06
22 2 0.06
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
AATAATTATTTAAAAATCAT
Found at i:15553023 original size:16 final size:16
Alignment explanation
Indices: 15553002--15553034 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15552992 ATTATAAAAT
15553002 TTAAATT-ATTTCATTA
1 TTAAATTAATTT-ATTA
15553018 TTAAATTAATTTATTA
1 TTAAATTAATTTATTA
15553034 T
1 T
15553035 ATTTAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAAATTAATTTATTA
Found at i:15554847 original size:9 final size:9
Alignment explanation
Indices: 15554833--15554859 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
15554823 ACTAAAGATT
15554833 CACTCAAAG
1 CACTCAAAG
15554842 CACTCAAAG
1 CACTCAAAG
15554851 CACTCAAAG
1 CACTCAAAG
15554860 TGTTTATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.33, G:0.11, T:0.11
Consensus pattern (9 bp):
CACTCAAAG
Found at i:15556125 original size:5 final size:5
Alignment explanation
Indices: 15556115--15556149 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
15556105 TACAACGCAT
15556115 AATAA AATAA AATAA AATAA AATAAA AATAA AATA
1 AATAA AATAA AATAA AATAA AAT-AA AATAA AATA
15556150 TAAAACTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:15556133 original size:15 final size:16
Alignment explanation
Indices: 15556115--15556149 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
15556105 TACAACGCAT
15556115 AATAAAAT-AAAATAA
1 AATAAAATAAAAATAA
15556130 AATAAAATAAAAATAA
1 AATAAAATAAAAATAA
15556146 AATA
1 AATA
15556150 TAAAACTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:15556144 original size:11 final size:11
Alignment explanation
Indices: 15556118--15556159 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
15556108 AACGCATAAT
15556118 AAAATAAAAT-
1 AAAATAAAATA
15556128 AAAATAAAATA
1 AAAATAAAATA
15556139 AAAATAAAATA
1 AAAATAAAATA
15556150 TAAAACTAAA
1 -AAAA-TAAA
15556160 TGAAATCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.34
11 11 0.38
12 4 0.14
13 4 0.14
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:15556528 original size:30 final size:30
Alignment explanation
Indices: 15556494--15556552 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
15556484 CAACTAGTTT
*
15556494 TCACACATGACTGTGTGCCCAGGCTGTGTG
1 TCACACACGACTGTGTGCCCAGGCTGTGTG
* *
15556524 TCACACACGACTGTGTGTCCAGGTTGTGT
1 TCACACACGACTGTGTGCCCAGGCTGTGT
15556553 AACTCTCTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.17, C:0.25, G:0.29, T:0.29
Consensus pattern (30 bp):
TCACACACGACTGTGTGCCCAGGCTGTGTG
Found at i:15556539 original size:17 final size:17
Alignment explanation
Indices: 15556472--15556542 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
15556462 CCACATACCC
*
15556472 GTGTGTCACACACAACT
1 GTGTGTCACACACGACT
* *
15556489 AGT-TTTCACACATGACT
1 -GTGTGTCACACACGACT
*
15556506 GTGTG-C-C-CA-GGCT
1 GTGTGTCACACACGACT
15556519 GTGTGTCACACACGACT
1 GTGTGTCACACACGACT
15556536 GTGTGTC
1 GTGTGTC
15556543 CAGGTTGTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
13 8 0.19
14 3 0.07
15 2 0.05
16 5 0.12
17 22 0.52
18 2 0.05
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (17 bp):
GTGTGTCACACACGACT
Found at i:15559422 original size:66 final size:66
Alignment explanation
Indices: 15559243--15559426 Score: 208
Period size: 66 Copynumber: 2.8 Consensus size: 66
15559233 GTCAGTAGGC
** *
15559243 TCACACGGCCTAGCACACGGGA-GTGTGGCTTGGTTGTGTGACACAAGTTAGTATACTCACCATT
1 TCACACGGCCTAGCACAC-GGACGTGTGGCTTGGACGTGTGACACAAGTCAGTATACTCACCATT
15559307 TT
65 TT
* * * * * * *
15559309 TCACACAGCCTAGCACACGGGCGTGTGGCTTGGACATATGTCACAAGTCAGTATGCTCATCATTT
1 TCACACGGCCTAGCACACGGACGTGTGGCTTGGACGTGTGACACAAGTCAGTATACTCACCATTT
15559374 T
66 T
* * * * * *
15559375 TCATACGGCCGAGCACACGGACGTGTCGCTTGGCCGTGTAACCCAAGTCAGT
1 TCACACGGCCTAGCACACGGACGTGTGGCTTGGACGTGTGACACAAGTCAGT
15559427 GAGCTCACTA
Statistics
Matches: 96, Mismatches: 21, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
65 2 0.02
66 94 0.98
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (66 bp):
TCACACGGCCTAGCACACGGACGTGTGGCTTGGACGTGTGACACAAGTCAGTATACTCACCATTT
T
Found at i:15570888 original size:18 final size:18
Alignment explanation
Indices: 15570865--15570903 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
15570855 CTTATTAAGT
15570865 GGATGTCCATCAGGATCA
1 GGATGTCCATCAGGATCA
15570883 GGATGTCCATCAGGATCA
1 GGATGTCCATCAGGATCA
15570901 GGA
1 GGA
15570904 AAATTCTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.21
Consensus pattern (18 bp):
GGATGTCCATCAGGATCA
Found at i:15571138 original size:295 final size:295
Alignment explanation
Indices: 15570608--15571195 Score: 1158
Period size: 295 Copynumber: 2.0 Consensus size: 295
15570598 AATTTTTATT
*
15570608 AAAATTCTTCGAATAAAGATGAGTATAAATACTAAGTTACCATGTAAGTGAATGTTCTAATAATT
1 AAAATTCTTCGAATAAAGATGAGTATAAATACTAAGTCACCATGTAAGTGAATGTTCTAATAATT
15570673 GAAAAAAAAAAAGAAAATTGAAATCAATCTCATAGTAACTTTCAAATTGAAAAGATAAAATAGTT
66 GAAAAAAAAAAAGAAAATTGAAATCAATCTCATAGTAACTTTCAAATTGAAAAGATAAAATAGTT
15570738 TCTCTATTTTTTCATACGAAATTGAGTATAAATCCAACTAATTTTTAAGTTAAAGTGTGGACACA
131 TCTCTATTTTTTCATACGAAATTGAGTATAAATCCAACTAATTTTTAAGTTAAAGTGTGGACACA
15570803 CATTTTAAATACATCATTAAAAATAAATTAAAAATTAAAATGTTATAAATATCTTATTAAGTGGA
196 CATTTTAAATACATCATTAAAAATAAATTAAAAATTAAAATGTTATAAATATCTTATTAAGTGGA
*
15570868 TGTCCATCAGGATCAGGATGTCCATCAGGATCAGG
261 TGTCCATCAGGATCAGGATGTCCATCAAGATCAGG
15570903 AAAATTCTTCGAATAAAGATGAGTATAAATACTAAGTCACCATGTAAGTGAATGTTCTAATAATT
1 AAAATTCTTCGAATAAAGATGAGTATAAATACTAAGTCACCATGTAAGTGAATGTTCTAATAATT
15570968 GAAAAAAAAAAAGAAAATTGAAATCAATCTCATAGTAACTTTCAAATTGAAAAGATAAAATAGTT
66 GAAAAAAAAAAAGAAAATTGAAATCAATCTCATAGTAACTTTCAAATTGAAAAGATAAAATAGTT
15571033 TCTCTATTTTTTCATACGAAATTGAGTATAAATCCAACTAATTTTTAAGTTAAAGTGTGGACACA
131 TCTCTATTTTTTCATACGAAATTGAGTATAAATCCAACTAATTTTTAAGTTAAAGTGTGGACACA
15571098 CATTTTAAATACATCATTAAAAATAAATTAAAAATTAAAATGTTATAAATATCTTATTAAGTGGA
196 CATTTTAAATACATCATTAAAAATAAATTAAAAATTAAAATGTTATAAATATCTTATTAAGTGGA
15571163 TGTCCATCAGGATCAGGATGTCCATCAAGATCA
261 TGTCCATCAGGATCAGGATGTCCATCAAGATCA
15571196 AGATAAGTTT
Statistics
Matches: 291, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
295 291 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.32
Consensus pattern (295 bp):
AAAATTCTTCGAATAAAGATGAGTATAAATACTAAGTCACCATGTAAGTGAATGTTCTAATAATT
GAAAAAAAAAAAGAAAATTGAAATCAATCTCATAGTAACTTTCAAATTGAAAAGATAAAATAGTT
TCTCTATTTTTTCATACGAAATTGAGTATAAATCCAACTAATTTTTAAGTTAAAGTGTGGACACA
CATTTTAAATACATCATTAAAAATAAATTAAAAATTAAAATGTTATAAATATCTTATTAAGTGGA
TGTCCATCAGGATCAGGATGTCCATCAAGATCAGG
Found at i:15571183 original size:18 final size:18
Alignment explanation
Indices: 15571160--15571195 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15571150 CTTATTAAGT
*
15571160 GGATGTCCATCAGGATCA
1 GGATGTCCATCAAGATCA
15571178 GGATGTCCATCAAGATCA
1 GGATGTCCATCAAGATCA
15571196 AGATAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (18 bp):
GGATGTCCATCAAGATCA
Found at i:15583228 original size:8 final size:8
Alignment explanation
Indices: 15583217--15583243 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
15583207 ACTTTAATAA
15583217 TTTAAAAT
1 TTTAAAAT
15583225 TTTAAAAT
1 TTTAAAAT
15583233 TTTAAAAT
1 TTTAAAAT
15583241 TTT
1 TTT
15583244 TTAAAGAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:15583892 original size:13 final size:12
Alignment explanation
Indices: 15583862--15583888 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15583852 GCTCAAAGGT
15583862 AAATTATGATGA
1 AAATTATGATGA
15583874 AAATTATGATGA
1 AAATTATGATGA
15583886 AAA
1 AAA
15583889 ATTAATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.30
Consensus pattern (12 bp):
AAATTATGATGA
Found at i:15590278 original size:28 final size:29
Alignment explanation
Indices: 15590246--15590301 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
15590236 CATTTTTACT
* *
15590246 TCCATTT-TGAGAAAACCACATTCATTTC
1 TCCATTTCAGAGAAAACCACAATCATTTC
*
15590274 TCCATTTCAGAGAAAACCATAATCATTT
1 TCCATTTCAGAGAAAACCACAATCATTT
15590302 TTGAATGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (29 bp):
TCCATTTCAGAGAAAACCACAATCATTTC
Found at i:15591788 original size:21 final size:22
Alignment explanation
Indices: 15591759--15591807 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
15591749 CAATAGTAGC
* *
15591759 ATTTCTTTTTGAAAAAT-TAAA
1 ATTTATTTTAGAAAAATATAAA
* *
15591780 ATTTATTTTAGAATAATATAAT
1 ATTTATTTTAGAAAAATATAAA
15591802 ATTTAT
1 ATTTAT
15591808 AATAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
ATTTATTTTAGAAAAATATAAA
Found at i:15592074 original size:17 final size:17
Alignment explanation
Indices: 15592052--15592105 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 17
15592042 GAAAATTGTA
15592052 AAAATAAATAATTTATT
1 AAAATAAATAATTTATT
*
15592069 AAAATAAA-AATATATT
1 AAAATAAATAATTTATT
*
15592085 AATTATATAAATAAATTATT
1 AA--A-ATAAATAATTTATT
15592105 A
1 A
15592106 TAATTTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 9 0.30
17 8 0.27
18 1 0.03
19 5 0.17
20 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATAAATAATTTATT
Done.