Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 50 of 182
Found at i:15592090 original size:23 final size:23
Alignment explanation
Indices: 15592050--15592099 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
15592040 AAGAAAATTG
15592050 TAAAAATAAATAATTTAT-TAAAA
1 TAAAAATAAATAATTTATAT-AAA
*
15592073 TAAAAATATATTAA-TTATATAAA
1 TAAAAATA-AATAATTTATATAAA
15592096 TAAA
1 TAAA
15592100 TTATTATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAAAATAAATAATTTATATAAA
Found at i:15597123 original size:17 final size:17
Alignment explanation
Indices: 15597101--15597133 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15597091 TAAAATTGGG
*
15597101 TTGAGAAATTGATTTAA
1 TTGAGAAATTAATTTAA
15597118 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
15597134 GTAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:15597149 original size:9 final size:9
Alignment explanation
Indices: 15597124--15597157 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
15597114 TTAATTGAGA
15597124 AATTAATTT
1 AATTAATTT
* *
15597133 AGTAAATTT
1 AATTAATTT
15597142 AATTAATTT
1 AATTAATTT
15597151 AATTAAT
1 AATTAAT
15597158 CGATTAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:15598190 original size:17 final size:17
Alignment explanation
Indices: 15598168--15598200 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15598158 ATATTAGGAA
*
15598168 TTTATGTAACCTAAATT
1 TTTATGAAACCTAAATT
15598185 TTTATGAAACCTAAAT
1 TTTATGAAACCTAAAT
15598201 AAACGAGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
TTTATGAAACCTAAATT
Found at i:15600416 original size:24 final size:24
Alignment explanation
Indices: 15600386--15600504 Score: 134
Period size: 24 Copynumber: 5.0 Consensus size: 24
15600376 CCCTCGGGGT
*
15600386 TAAATGATTGATTTGTCCGTGATG
1 TAAATGATTGATTTGTCTGTGATG
*
15600410 TAAATGATTGATTTTTCTGAT-ATG
1 TAAATGATTGATTTGTCTG-TGATG
*
15600434 TAAATGATTGATTTGTCTGTGATT
1 TAAATGATTGATTTGTCTGTGATG
* * *
15600458 TAAATAACTGATTTGTCTGTAAT-
1 TAAATGATTGATTTGTCTGTGATG
* *
15600481 TGATATGAATGATTTGTCTGTGAT
1 T-AAATGATTGATTTGTCTGTGAT
15600505 TTGTATGACT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
23 2 0.02
24 78 0.96
25 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (24 bp):
TAAATGATTGATTTGTCTGTGATG
Found at i:15600511 original size:24 final size:24
Alignment explanation
Indices: 15600437--15600512 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
15600427 TGATATGTAA
* **
15600437 ATGATTGATTTGTCTGTGATTTAA
1 ATGAATGATTTGTCTGTGATTTGT
*
15600461 AT-AACTGATTTGTCTGT-AATTGAT
1 ATGAA-TGATTTGTCTGTGATTTG-T
15600485 ATGAATGATTTGTCTGTGATTTGT
1 ATGAATGATTTGTCTGTGATTTGT
15600509 ATGA
1 ATGA
15600513 CTAGTTCTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
23 4 0.09
24 33 0.77
25 6 0.14
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (24 bp):
ATGAATGATTTGTCTGTGATTTGT
Found at i:15600720 original size:32 final size:31
Alignment explanation
Indices: 15600684--15600777 Score: 100
Period size: 32 Copynumber: 3.0 Consensus size: 31
15600674 TTTGTGTCGG
* * *
15600684 TCATATTACCATTACTGATGGCTGTGTGCCGA
1 TCATATTACTA-TACTAATGGCTGTGTGCCAA
* *
15600716 TCATATTACTACTACTAATGGTTTTGTGCCAA
1 TCATATTACTA-TACTAATGGCTGTGTGCCAA
*
15600748 TCATATTACTATACTTATGGCT-TGTAGCCA
1 TCATATTACTATACTAATGGCTGTGT-GCCA
15600778 TTCTGTTTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
30 3 0.06
31 13 0.25
32 37 0.70
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (31 bp):
TCATATTACTATACTAATGGCTGTGTGCCAA
Found at i:15601064 original size:46 final size:46
Alignment explanation
Indices: 15600987--15601074 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 46
15600977 ATTATTGCAT
* ** ** * *
15600987 TTCTATTACTGATTCTGTCACTGTATTGGGCTTAGGCTCACATGTA
1 TTCTATTACTAATTCTGAAACTGTAAGGGGCTAAGGCCCACATGTA
*
15601033 TTCTATTTCTAATTCTGAAACTGTAAGGGGCTAAGGCCCACA
1 TTCTATTACTAATTCTGAAACTGTAAGGGGCTAAGGCCCACA
15601075 CTACACTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (46 bp):
TTCTATTACTAATTCTGAAACTGTAAGGGGCTAAGGCCCACATGTA
Found at i:15604389 original size:51 final size:51
Alignment explanation
Indices: 15604312--15604413 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
15604302 GTAGCAGTAT
* *
15604312 AGGGAAAGAATAGATGAATTTTAAGACTGCCTTCAGTGTCACGACATGACC
1 AGGGAAAGAATAGAAGAATTTAAAGACTGCCTTCAGTGTCACGACATGACC
15604363 AGGGAAAGAATAGAAGAATTTAAAGACTGCCTTCAGTGTCACGACATGACC
1 AGGGAAAGAATAGAAGAATTTAAAGACTGCCTTCAGTGTCACGACATGACC
15604414 TGAAGATTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (51 bp):
AGGGAAAGAATAGAAGAATTTAAAGACTGCCTTCAGTGTCACGACATGACC
Found at i:15608110 original size:60 final size:60
Alignment explanation
Indices: 15608036--15608150 Score: 167
Period size: 60 Copynumber: 1.9 Consensus size: 60
15608026 TGCGTAACAG
* * *
15608036 AGGCACCGTAGTGCAAACTGAGCCACCGAAGTACAAACAGAGGCACCAAAGTGCACACAA
1 AGGCACCGAAGTGCAAACAGAGCCACCAAAGTACAAACAGAGGCACCAAAGTGCACACAA
* * * *
15608096 AGGCACTGAAGTGCAATCAGAGGCACCAAAGTGCAAACAGAGGCACCAAAGTGCA
1 AGGCACCGAAGTGCAAACAGAGCCACCAAAGTACAAACAGAGGCACCAAAGTGCA
15608151 ATCCTGTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.40, C:0.26, G:0.25, T:0.09
Consensus pattern (60 bp):
AGGCACCGAAGTGCAAACAGAGCCACCAAAGTACAAACAGAGGCACCAAAGTGCACACAA
Found at i:15608148 original size:20 final size:20
Alignment explanation
Indices: 15608031--15608151 Score: 143
Period size: 20 Copynumber: 6.0 Consensus size: 20
15608021 AAAAATGCGT
**
15608031 AACAGAGGCACCGTAGTGCA
1 AACAGAGGCACCAAAGTGCA
* * * *
15608051 AACTGAGCCACCGAAGTACA
1 AACAGAGGCACCAAAGTGCA
15608071 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCACCAAAGTGCA
* * **
15608091 CACAAAGGCACTGAAGTGCA
1 AACAGAGGCACCAAAGTGCA
*
15608111 ATCAGAGGCACCAAAGTGCA
1 AACAGAGGCACCAAAGTGCA
15608131 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCACCAAAGTGCA
15608151 A
1 A
15608152 TCCTGTACAA
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 83 1.00
ACGTcount: A:0.41, C:0.26, G:0.25, T:0.08
Consensus pattern (20 bp):
AACAGAGGCACCAAAGTGCA
Found at i:15622530 original size:12 final size:14
Alignment explanation
Indices: 15622510--15622543 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
15622500 GTTCATTTAA
15622510 TCATCAAGT-TTTT
1 TCATCAAGTGTTTT
15622523 TC-TCAAGTGTTTT
1 TCATCAAGTGTTTT
15622536 TCATCAAG
1 TCATCAAG
15622544 CTTTCATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.32
13 8 0.42
14 5 0.26
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (14 bp):
TCATCAAGTGTTTT
Found at i:15627170 original size:54 final size:54
Alignment explanation
Indices: 15627088--15627193 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
15627078 ATAGGGAAAT
* * *
15627088 AGCCTCATGTTATCTACTATGCTTCGAAGACTTTGGATGCTACCCAAAGCAAAG
1 AGCCTCATGCTATATACTACGCTTCGAAGACTTTGGATGCTACCCAAAGCAAAG
15627142 AGCCTCATGCTATATACTACGCTTCGAAGACTTTGGATGCTACCCAAAGCAA
1 AGCCTCATGCTATATACTACGCTTCGAAGACTTTGGATGCTACCCAAAGCAA
15627194 TTATACAACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (54 bp):
AGCCTCATGCTATATACTACGCTTCGAAGACTTTGGATGCTACCCAAAGCAAAG
Found at i:15639385 original size:28 final size:28
Alignment explanation
Indices: 15639321--15639385 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
15639311 TCATAATTTT
* *
15639321 GGATTCATACATGCAGATTCATATATAC
1 GGATTCATACATGCAAATTCATAGATAC
* * *
15639349 GAATCCATAGATGCAAATTCATAGA-AGC
1 GGATTCATACATGCAAATTCATAGATA-C
15639377 GGATTCATA
1 GGATTCATA
15639386 TATATAGATT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (28 bp):
GGATTCATACATGCAAATTCATAGATAC
Found at i:15639756 original size:20 final size:20
Alignment explanation
Indices: 15639731--15639776 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15639721 CCCGGCCTGG
* *
15639731 TTTTTAATAACACAAAAAAA
1 TTTTTAAAAACAAAAAAAAA
*
15639751 TTTTTAAAAATAAAAAAAAA
1 TTTTTAAAAACAAAAAAAAA
15639771 TATTTT
1 T-TTTT
15639777 TAAAGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (20 bp):
TTTTTAAAAACAAAAAAAAA
Found at i:15642422 original size:90 final size:89
Alignment explanation
Indices: 15642116--15642403 Score: 384
Period size: 90 Copynumber: 3.2 Consensus size: 89
15642106 ATCATCAACA
* * * * *
15642116 ATGAAAAAGGATGGTGAGGACCATCGAACTGTGAAAAGAG-ATGGCTGCGGCTATCGATCTATGA
1 ATGAAAAGGGATGGTGACGACCA-CGAACTATGAAAA-AGTATGGCTTCGACTATCGATCTATGA
*
15642180 AAAGGGA-ATGCTTTGGCTATCAAATT
64 AAAGGGATA-GCTTCGGCTATCAAATT
* *
15642206 ATGAAAAGGGATGGTGACGACCACTGAACTATGAAAAATTATGGTTTC-AGCTATCGATCTATGA
1 ATGAAAAGGGATGGTGACGACCAC-GAACTATGAAAAAGTATGGCTTCGA-CTATCGATCTATGA
*
15642270 AAAGGGATAGCTTCGACTATCAAATT
64 AAAGGGATAGCTTCGGCTATCAAATT
*
15642296 ATGAAAAGGGATGGTGACGACCACCGAACTATGAAAAAGTATGGCTTCGACTATCTATCTATGAA
1 ATGAAAAGGGATGGTGACGACCA-CGAACTATGAAAAAGTATGGCTTCGACTATCGATCTATGAA
* *
15642361 AAGGGATAGATCCGGCTATCAAATT
65 AAGGGATAGCTTCGGCTATCAAATT
*
15642386 ATGAAAAGGAATGGTGAC
1 ATGAAAAGGGATGGTGAC
15642404 AGCCATCAAA
Statistics
Matches: 176, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
89 2 0.01
90 171 0.97
91 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (89 bp):
ATGAAAAGGGATGGTGACGACCACGAACTATGAAAAAGTATGGCTTCGACTATCGATCTATGAAA
AGGGATAGCTTCGGCTATCAAATT
Found at i:15642449 original size:90 final size:90
Alignment explanation
Indices: 15642196--15642459 Score: 266
Period size: 90 Copynumber: 2.9 Consensus size: 90
15642186 AATGCTTTGG
* ** * ** * * *
15642196 CTATCAAATTATGAAAAGGGATGGTGACGACCACTGAACTATGAAAAATTATGGTTTC-AGCTAT
1 CTATCAAATTATGAAAAGGAATGGTGACGACCACCAAACAATGAAAAAGGATGGCTACGA-CCAT
* * *
15642260 CGATCTATGAAAAGGGATAGCTTCGA
65 CAATCTATGAAAAGGGATAGATCCGA
* * * * * *
15642286 CTATCAAATTATGAAAAGGGATGGTGACGACCACCGAACTATGAAAAAGTATGGCTTCGACTATC
1 CTATCAAATTATGAAAAGGAATGGTGACGACCACCAAACAATGAAAAAGGATGGCTACGACCATC
* *
15642351 TATCTATGAAAAGGGATAGATCCGG
66 AATCTATGAAAAGGGATAGATCCGA
* *
15642376 CTATCAAATTATGAAAAGGAATGGTGAC-AGCCATCAAACAATGAAAAGGGATGG-TAACGACCA
1 CTATCAAATTATGAAAAGGAATGGTGACGA-CCACCAAACAATGAAAAAGGATGGCT-ACGACCA
15642439 TCAAAT-TATGAAAAGGGATAG
64 TC-AATCTATGAAAAGGGATAG
15642460 CTTTGGCTGT
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
89 2 0.01
90 149 0.97
91 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (90 bp):
CTATCAAATTATGAAAAGGAATGGTGACGACCACCAAACAATGAAAAAGGATGGCTACGACCATC
AATCTATGAAAAGGGATAGATCCGA
Found at i:15642455 original size:30 final size:29
Alignment explanation
Indices: 15642265--15642457 Score: 138
Period size: 30 Copynumber: 6.4 Consensus size: 29
15642255 GCTATCGATC
* * *
15642265 TATGAAAAGGGATAGCTTCGACTATCAAAT
1 TATGAAAAGGGAT-GGTACGACCATCAAAT
* * *
15642295 TATGAAAAGGGATGGTGACGACCACCGAAC
1 TATGAAAAGGGATGGT-ACGACCATCAAAT
* * * * *
15642325 TATGAAAAAGTATGGCTTCGACTATC-TAT
1 TATGAAAAGGGATGG-TACGACCATCAAAT
* * * *
15642354 CTATGAAAAGGGATAGATCCGGCTATCAAAT
1 -TATGAAAAGGGAT-GGTACGACCATCAAAT
* *
15642385 TATGAAAAGGAATGGTGAC-AGCCATCAAAC
1 TATGAAAAGGGATGGT-ACGA-CCATCAAAT
*
15642415 AATGAAAAGGGATGGTAACGACCATCAAAT
1 TATGAAAAGGGATGGT-ACGACCATCAAAT
15642445 TATGAAAAGGGAT
1 TATGAAAAGGGAT
15642458 AGCTTTGGCT
Statistics
Matches: 125, Mismatches: 30, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
29 5 0.04
30 115 0.92
31 5 0.04
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTACGACCATCAAAT
Found at i:15642503 original size:30 final size:30
Alignment explanation
Indices: 15642449--15642517 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
15642439 TCAAATTATG
* *
15642449 AAAAGGGATAGCTTTGGCTGTCGAACTACA
1 AAAAGGGATAACTTTGGCTATCGAACTACA
* * **
15642479 AAAAGGGATAACTTTGGTTATCGAATTATG
1 AAAAGGGATAACTTTGGCTATCGAACTACA
15642509 AAAAGGGAT
1 AAAAGGGAT
15642518 GGGTTAACCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (30 bp):
AAAAGGGATAACTTTGGCTATCGAACTACA
Found at i:15648076 original size:21 final size:21
Alignment explanation
Indices: 15648039--15648080 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15648029 CATAAAAACT
*
15648039 TCTAAAAATTTCTCCATCATG
1 TCTAAAAATTTCGCCATCATG
15648060 TCTAAAAATATT-GCCATCATG
1 TCTAAAAAT-TTCGCCATCATG
15648081 GAACGCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (21 bp):
TCTAAAAATTTCGCCATCATG
Found at i:15649166 original size:12 final size:13
Alignment explanation
Indices: 15649148--15649189 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
15649138 AAGACAAACT
15649148 TAATAATAATATA
1 TAATAATAATATA
15649161 -AATAATAATATA
1 TAATAATAATATA
*
15649173 TACAGAATAATATA
1 TA-ATAATAATATA
15649187 TAA
1 TAA
15649190 AAGTTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 12 0.46
13 2 0.08
14 12 0.46
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:15649181 original size:14 final size:14
Alignment explanation
Indices: 15649149--15649190 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
15649139 AGACAAACTT
*
15649149 AATAATAATATAAAT
1 AATAAT-ATATAAAG
*
15649164 AATAATATATACAG
1 AATAATATATAAAG
15649178 AATAATATATAAA
1 AATAATATATAAA
15649191 AGTTGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (14 bp):
AATAATATATAAAG
Found at i:15649453 original size:18 final size:18
Alignment explanation
Indices: 15649430--15649464 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15649420 AATATGTAGA
15649430 TAAATATATAA-ACTAATT
1 TAAATA-ATAATACTAATT
15649448 TAAATAATAATACTAAT
1 TAAATAATAATACTAAT
15649465 GATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAATAATAATACTAATT
Found at i:15649471 original size:15 final size:15
Alignment explanation
Indices: 15649451--15649485 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
15649441 ACTAATTTAA
15649451 ATAATAATACTAATG
1 ATAATAATACTAATG
*
15649466 ATAATAATTCTAATG
1 ATAATAATACTAATG
15649481 ATAAT
1 ATAAT
15649486 GATGATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (15 bp):
ATAATAATACTAATG
Found at i:15651134 original size:100 final size:100
Alignment explanation
Indices: 15651000--15651623 Score: 801
Period size: 100 Copynumber: 6.2 Consensus size: 100
15650990 AACCTTTTTA
* *
15651000 ACTGCACCGCCAGGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCTGGG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCTGGG
* *
15651065 AAGCAAGATTCACTGATATGGCTTTAATCTGTTCC
66 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* *
15651100 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCTGGG
* *
15651165 AAGCAAGATTCAACGTTGTGGCTTTAATCTGTTCC
66 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * *
15651200 ACTGCACTGCCTGGGAGGTAAGATTCGCTGCTGGAGCTTTAATCTTTTTAACTGCAATGT-TAGG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCT-GG
* * * *
15651264 GAGGCAAGGTTCACTGTTGTGGCTTTAATCTGTTCC
65 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
** * *
15651300 ACTGCACTACCTGGGAGGTAAGATTCACTGTTGTAGCTTTAATCTCTTTAACTGCAATGT-TGGG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCT-GG
*
15651364 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTGC
65 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * *
15651400 ACTGTACTGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATCT-TTTGAACTGCAATATCGGG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTT-AACTGCAATGTCTGG
15651464 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
65 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* ** * *
15651500 GCTGCACCGTTTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GAG
1 ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCTG-G
* * * * *
15651564 AAAACAAGATACGCCG-TCTTGGCTTTAATCTGTTCC
65 GAAGCAAGATTCACCGAT-GTGGCTTTAATCTGTTCC
* *
15651600 ACTACACCGCTTGGG-AGATAAGAT
1 ACTGCACCGCCTGGGAAG-TAAGAT
15651624 CTGTAATTCT
Statistics
Matches: 466, Mismatches: 51, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
99 7 0.02
100 456 0.98
101 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (100 bp):
ACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCTGGG
AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
Found at i:15651573 original size:50 final size:49
Alignment explanation
Indices: 15650962--15651561 Score: 403
Period size: 50 Copynumber: 12.0 Consensus size: 49
15650952 CGCAACTTTT
* * ** * * * ** *
15650962 GGGAAGTAAGATTCGCCATTGTAGCTTCAACCTTTTTAACTGCACCGCC
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* ** *
15651011 AGGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTCTTTAACTGCAATGTC
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* * * ** ** *
15651061 TGGGAAGCAAGATTCACTGATATGGCTTTAATCTGTTCCACTGCACCGCC
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* * *
15651111 AGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTC
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* ** * *
15651161 GGGGAAGCAAGATTCAAC-GTTGTGGCTTTAATCTGTTCCACTGCACTGCC
1 -GGGAAGCAAGATTC-ACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* * * * * * *
15651211 TGGGAGGTAAGATTCGCTGCTGGAGCTTTAATCTTTTTAACTGCAATGTTA
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATG-TC
* * * ** * **
15651262 GGGAGGCAAGGTTCACTGTTGTGGCTTTAATCTGTTCCACTGCACTACC
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* * * *
15651311 TGGGAGGTAAGATTCACTGTTGTAGCTTTAATCTCTTTAACTGCAATGTTG
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATG-TC
* * * ** * * *
15651362 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTGCACTGTACTGCC
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
* * * *
15651411 TGGGAGGTAAGATTCGCTGTTGTAGCTTTAATCT-TTTGAACTGCAATATC
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTT-AACTGCAATGTC
* * * *** ** *
15651461 GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCGCTGCACCGTTT
1 -GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATG-TC
* * * *
15651512 GAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
15651561 G
1 G
15651562 AGAAAACAAG
Statistics
Matches: 411, Mismatches: 130, Indels: 19
0.73 0.23 0.03
Matches are distributed among these distances:
49 5 0.01
50 402 0.98
51 4 0.01
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (49 bp):
GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTTAACTGCAATGTC
Found at i:15651722 original size:44 final size:44
Alignment explanation
Indices: 15651643--15651729 Score: 75
Period size: 44 Copynumber: 2.0 Consensus size: 44
15651633 TTCGGTCTAT
* * * ** * * *
15651643 TCCACCGTGATCTCAGGGAAATTGGATTACTGGCTTTAATTTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
* * *
15651687 TCCGCTGTAATCTCAAGGAGATAAGATTTTTGGCTTCAATCTG
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
15651730 ATGCAATCTA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
44 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
Found at i:15651840 original size:44 final size:44
Alignment explanation
Indices: 15651778--15651900 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
15651768 CTTTTATTTT
* * *
15651778 AATCCGCTCCACTCTAATCTCAGGGAGATAGGATTACTGACTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGACTTC
* * * *
15651822 AATCTGCTCCGCTGTAATCTCAGGGAGTTAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGACTTC
15651866 AATCTGCTCCACTGTAA-CATCAGGGAGATAAGATT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATT
15651901 CACCATTTCC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 1 0.01
44 68 0.99
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGACTTC
Found at i:15658355 original size:36 final size:36
Alignment explanation
Indices: 15658315--15658385 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
15658305 GCATTTTGAA
15658315 AAGGATATCTAATTATTTGGGTCAAATGAGAAAATG
1 AAGGATATCTAATTATTTGGGTCAAATGAGAAAATG
*
15658351 AAGGATATCTGATTATTTGGGTCAAATGAGAAAAT
1 AAGGATATCTAATTATTTGGGTCAAATGAGAAAAT
15658386 CAAAACCCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (36 bp):
AAGGATATCTAATTATTTGGGTCAAATGAGAAAATG
Found at i:15658962 original size:12 final size:13
Alignment explanation
Indices: 15658944--15658985 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
15658934 AAGAAAAACT
15658944 TAATAATAATATA
1 TAATAATAATATA
15658957 -AATAATAATATA
1 TAATAATAATATA
*
15658969 TACAGAATAATATA
1 TA-ATAATAATATA
15658983 TAA
1 TAA
15658986 AAGTTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 12 0.46
13 2 0.08
14 12 0.46
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:15658977 original size:14 final size:14
Alignment explanation
Indices: 15658945--15658986 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
15658935 AGAAAAACTT
*
15658945 AATAATAATATAAAT
1 AATAAT-ATATAAAG
*
15658960 AATAATATATACAG
1 AATAATATATAAAG
15658974 AATAATATATAAA
1 AATAATATATAAA
15658987 AGTTGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (14 bp):
AATAATATATAAAG
Found at i:15659272 original size:15 final size:15
Alignment explanation
Indices: 15659252--15659286 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
15659242 ACTGATATAA
15659252 ATAATAATACTAATG
1 ATAATAATACTAATG
*
15659267 ATAATAATTCTAATG
1 ATAATAATACTAATG
15659282 ATAAT
1 ATAAT
15659287 GATGATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (15 bp):
ATAATAATACTAATG
Found at i:15660854 original size:50 final size:50
Alignment explanation
Indices: 15660761--15661556 Score: 425
Period size: 50 Copynumber: 15.9 Consensus size: 50
15660751 CGCAACTTTT
* * * * * *
15660761 GGGAAGTAAGATTCGCCATTGTAGCTTCAACCTTTTTATCTGCACTGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* ** * ***
15660811 GGTAAGTAAGATTCGTTGTTGTAGCTTTAATCTCTTTAACTGCAATGTTG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * ** ** *
15660861 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * ***
15660911 GGGAGGTAAGATTCGCTGTTGTAGGTTTAATCTCTTTAACTGCAATGTTG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * * ** * *
15660961 GGGAAGCAAGATTCTCCGATGTCGCTTTAATCAGTTCCACTGCAGTGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * * *
15661011 GGGAGGTAAGATTTGCTGCTGTAGCTTTAATCT-TTTGAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTT-AACTGCAATGCCA
** * * * ** ***
15661061 GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCACCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* ** * *
15661111 GGGAAATAAGATTCGATGTTGTAGCTTTAATCTCTTTAACTGCAATGTC-
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * ** **
15661160 GGCGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTA
1 GG-GAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCC-A
* * * * * **
15661212 -GGAGGTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACTGCAATGTTA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * * * ** ** *
15661261 GGGAGGCAAGGTTCACCATTGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * ***
15661311 GGGAGGTAAGATTCGCTGTTGTAGGTTTAATCTCTTTAACTGCAATGTTG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * * ** * *
15661361 GGGAAGCAAGATTCTCCGATGTCGCTTTAATCAGTTCCACTGCAGTGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
* * * * * *
15661411 GGGAGGTAAGATTTGCTGCTGTAGCTTTAATCT-TTTGAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTT-AACTGCAATGCCA
** * * * * ** **
15661461 GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCT-GCTGCACCGCTT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTT-TAACTGCAATGCCA
* * * *
15661511 GAGAAGTAAGATTCACTGTTGTAGC-TTAATCTTTTTAACTGCAATG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATG
15661557 TCGAGAAAAC
Statistics
Matches: 533, Mismatches: 203, Indels: 21
0.70 0.27 0.03
Matches are distributed among these distances:
48 1 0.00
49 22 0.04
50 504 0.95
51 5 0.01
52 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTTAACTGCAATGCCA
Found at i:15660934 original size:100 final size:100
Alignment explanation
Indices: 15660816--15661621 Score: 1055
Period size: 100 Copynumber: 8.1 Consensus size: 100
15660806 TGCCAGGTAA
* *
15660816 GTAAGATTCGTTGTTGTAGCTTTAATCTCTTTAACTGCAATGTTGGGGAAGCAAGATTCACCGAT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
15660881 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
15660916 GTAAGATTCGCTGTTGTAGGTTTAATCTCTTTAACTGCAATGTTGGGGAAGCAAGATTCTCCGAT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
* * **
15660981 GTCGCTTTAATCAGTTCCACTGCAGTGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
15661016 GTAAGATTTGCTGCTGTAGCTTTAATCT-TTTGAACTGCAATGTCGGGGAAACAAGATTCACCGA
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTT-AACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * *
15661080 TGTGGCTTTAATCTGTTCCACTGCACCACCAGGGAA
65 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * *
15661116 ATAAGATTCGATGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGCGAAGCAAGATTCACCGTT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
*
15661181 GTGGCTTTAATCTGTTCCACTGCACCGCCTAGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * ** * *
15661216 GTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACTGCAATGTTAGGGAGGCAAGGTTCACC-AT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA-
15661280 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
65 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
15661316 GTAAGATTCGCTGTTGTAGGTTTAATCTCTTTAACTGCAATGTTGGGGAAGCAAGATTCTCCGAT
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
* * **
15661381 GTCGCTTTAATCAGTTCCACTGCAGTGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
15661416 GTAAGATTTGCTGCTGTAGCTTTAATCT-TTTGAACTGCAATGTCGGGGAAACAAGATTCACCGA
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTT-AACTGCAATGTCGGGGAAGCAAGATTCACCGA
** * * *
15661480 TGTGGCTTTAATCTGTTCTGCTGCACCGCTTGAGAA
65 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * * * * *
15661516 GTAAGATTCACTGTTGTAGC-TTAATCTTTTTAACTGCAATGTCGAGAAAACAAGATACGCCG-T
1 GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
* * * *
15661579 CTTGGCTTTAATCTGTTCCACTACACCACTTGGGAG
66 -GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
*
15661615 ATAAGAT
1 GTAAGAT
15661622 CTATAATTCT
Statistics
Matches: 614, Mismatches: 85, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
98 1 0.00
99 74 0.12
100 535 0.87
101 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (100 bp):
GTAAGATTCGCTGTTGTAGCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT
GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
Found at i:15661718 original size:44 final size:44
Alignment explanation
Indices: 15661641--15662181 Score: 267
Period size: 44 Copynumber: 11.6 Consensus size: 44
15661631 TTCGGTCTAT
* * * * *
15661641 TCCACCGTGATCTCAGGGAAATAGGATTACTGGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
*
15661685 TCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G--C
** ** * *
15661736 TACTCTACTGTAA-CTTCAAAGAGATAAGATCCTT-T-ATTTTAATTTGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAATCTGC
* * * * * *
15661783 TCCACTATAATCTTAGGGAAATAGGATTACT-GTTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
*
15661826 TCTACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G--C
* * *** * * *
15661877 TACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTGTAATCCGT
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGATTTCTGGCTT-CAATCTGC
* * * *
15661924 TCCACTGTAATATCAGGGAAATAGGATTACTGGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
*
15661968 TCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCAATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---TG----C
* * ** * * *
15662019 TACTCTACTGTAA-CTTTAGAGAGATAAGATCCTT-T-ATTTTAATCCGA
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAATCTGC
* *
15662066 TCCACTGTAATCTCAGGGAGA-AAGGATTACTGACTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAA-GATTTCTGGCTTCAATCTGC
*
15662110 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATTTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
15662154 TCCACTGTAA-CATCAGGGAGATAAGATT
1 TCCACTGTAATC-TCAGGGAGATAAGATT
15662182 CACCATTTTC
Statistics
Matches: 375, Mismatches: 73, Indels: 98
0.69 0.13 0.18
Matches are distributed among these distances:
42 2 0.01
43 39 0.10
44 207 0.55
45 12 0.03
46 3 0.01
47 8 0.02
49 4 0.01
51 8 0.02
52 3 0.01
53 10 0.03
54 73 0.19
55 2 0.01
56 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
Found at i:15662040 original size:142 final size:142
Alignment explanation
Indices: 15661641--15662149 Score: 833
Period size: 142 Copynumber: 3.6 Consensus size: 142
15661631 TTCGGTCTAT
* * *
15661641 TCCACCGTGATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGA
*
15661706 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
** *
15661771 ATTTTAATTTGC
131 ATTTTAATCCGA
* * * *
15661783 TCCACTATAATCTTAGGGAAATAGGATTACT-GTTTCAATCTGCTCTACTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGA
15661847 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
15661912 ATTGTAATCCGT
131 ATTTTAATCCGA
* *
15661924 TCCACTGTAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGA
* *
15661989 TAAGATTTCTGGCTTCAATCTGATGCAATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
15662054 ATTTTAATCCGA
131 ATTTTAATCCGA
*
15662066 TCCACTGTAATCTCAGGGAGAA-AGGATTACTGACTTCAATCTGCTCCACTGTAATCTCAGGGAG
1 TCCACTGTAATCTCAGGGA-AATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
15662130 ATAAGATTTCTGGCTTCAAT
65 ATAAGATTTCTGGCTTCAAT
15662150 TTGCTCCACT
Statistics
Matches: 340, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
141 130 0.38
142 208 0.61
143 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (142 bp):
TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGA
TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCCGA
Found at i:15667221 original size:50 final size:50
Alignment explanation
Indices: 15667140--15667612 Score: 276
Period size: 50 Copynumber: 9.5 Consensus size: 50
15667130 TACCGATGTG
** *** *
15667140 GCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTA
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTCCCTGTTGTA
* * * *
15667190 GCTTTAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-GTTGTG
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTC-CCTGTTGTA
* ** * ** * * * *
15667240 GCTTTAATCTATTCCATTGCACCGCCTTGGAGGTAAGATTCGCTGTTGTA
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTCCCTGTTGTA
* * ** * * * *
15667290 GCATTAATCTTTTTAGTTGCAATGTC-AGGAAGGCAAGGTTCACC-GTTGTG
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAA-GTAAGATTC-CCTGTTGTA
** *** *
15667340 GCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTA
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTCCCTGTTGTA
* * * * * *
15667390 GCTTTAATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACC-GATGTG
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTC-CCTGTTGTA
** * * * * * *
15667440 GCTTTAATCTGTTCCACTGCACTGCCTAGGAGGTAAGATTCGCTGCTGTA
1 GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTCCCTGTTGTA
* * * * *
15667490 GCTTTAATCT-TTTAAACTGCAATGTCAGCGAAGCAAGATTCACC-GATGTG
1 GCTTTAATCTGTTT-AACTGCAATGTCTGGGAAGTAAGATTC-CCTGTTGTA
*** * * * *
15667540 GCTTTAATCTGTTCCGCTGCACTG-CTTGAGATGTAAGATTCGCTGTTGTA
1 GCTTTAATCTGTTTAACTGCAATGTC-TGGGAAGTAAGATTCCCTGTTGTA
* *
15667590 GCTTTAATCTTTTTAACTTCAAT
1 GCTTTAATCTGTTTAACTGCAAT
15667613 ATCGAAAAAA
Statistics
Matches: 309, Mismatches: 101, Indels: 26
0.71 0.23 0.06
Matches are distributed among these distances:
49 11 0.04
50 286 0.93
51 12 0.04
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (50 bp):
GCTTTAATCTGTTTAACTGCAATGTCTGGGAAGTAAGATTCCCTGTTGTA
Found at i:15667311 original size:100 final size:100
Alignment explanation
Indices: 15667131--15667678 Score: 634
Period size: 100 Copynumber: 5.5 Consensus size: 100
15667121 TTAGAGGAGT
** * *
15667131 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
*
15667196 ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTC
66 ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * * *
15667231 ACCGTTGTGGCTTTAATCTATTCCATTGCACCGCCTTGGAGGTAAGATTCGCTGTTGTAGCATTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
** * *
15667296 ATCTTTTTAGTTGCAATGTC-AGGAAGGCAAGGTTC
66 ATCTTTTTAACTGCAATGTCGGGGAA-GCAAGATTC
* ** * *
15667331 ACCGTTGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* *
15667396 ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTC
66 ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * *
15667431 ACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCTAGGAGGTAAGATTCGCTGCTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* * *
15667496 ATCTTTTAAACTGCAATGTCAGCGAAGCAAGATTC
66 ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * *
15667531 ACCGATGTGGCTTTAATCTGTTCCGCTGCACTGCTTGAGATGTAAGATTCGCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* * *** * *
15667596 ATCTTTTTAACTTCAATATCGAAAAAACAAGATAC
66 ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * *
15667631 GCC-ATCTTAGCTTTAATCTGTTCCACTACACCGCTTGGG-AGATAAGAT
1 ACCGAT-GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAG-TAAGAT
15667679 CTATAATTCT
Statistics
Matches: 377, Mismatches: 67, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
99 7 0.02
100 366 0.97
101 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (100 bp):
ACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
Found at i:15667479 original size:200 final size:200
Alignment explanation
Indices: 15667131--15667612 Score: 736
Period size: 200 Copynumber: 2.4 Consensus size: 200
15667121 TTAGAGGAGT
15667131 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
* * *
15667196 ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCCATTGCA
66 ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
* * * **
15667261 CCGCCTTGGAGGTAAGATTCGCTGTTGTAGCATTAATCTTTTTAGTTGCAATGTCAG-GAAGGCA
131 CCGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAGCGAA-GCA
*
15667325 AGGTTC
195 AGATTC
*
15667331 ACCGTTGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
*
15667396 ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA
66 ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
* *
15667461 CTGCCTAGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTAAACTGCAATGTCAGCGAAGCAA
131 CCGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAGCGAAGCAA
15667526 GATTC
196 GATTC
* * * * *
15667531 ACCGATGTGGCTTTAATCTGTTCCGCTGCA-C-TGCTTGAGATGTAAGATTCGCTGTTGTAGCTT
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCAT-C-AGGGAAGTAAGATTCCCTGTTGTAGCTT
* *
15667594 TAATCTTTTTAACTTCAAT
64 TAATCTCTTTAACTGCAAT
15667613 ATCGAAAAAA
Statistics
Matches: 258, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
198 1 0.00
199 2 0.01
200 252 0.98
201 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (200 bp):
ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
CCGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAGCGAAGCAA
GATTC
Found at i:15667646 original size:200 final size:199
Alignment explanation
Indices: 15667131--15667678 Score: 724
Period size: 200 Copynumber: 2.7 Consensus size: 199
15667121 TTAGAGGAGT
15667131 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
* * *
15667196 ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCCATTGCA
66 ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATT-TGGCTTTAATCTGTTCCACTGCA
* * * **
15667261 CCGCCTTGGAGGTAAGATTCGCTGTTGTAGCATTAATCTTTTTAGTTGCAATGTCAGGAAGGCAA
130 CCGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAGGAAGGCAA
*
15667326 GGTTC
195 GATTC
*
15667331 ACCGTTGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
* *
15667396 ATCTCTTTAACTGCAATGGCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA
66 ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATTTGGCTTTAATCTGTTCCACTGCA
* *
15667461 CTGCCTAGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTAAACTGCAATGTCAGCGAA-GCA
130 CCGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAG-GAAGGCA
15667525 AGATTC
194 AGATTC
* * * * *
15667531 ACCGATGTGGCTTTAATCTGTTCCGCTGCA-C-TGCTTGAGATGTAAGATTCGCTGTTGTAGCTT
1 ACCGATGTGGCTTTAATCTGTTCCACTGCACCAT-C-AGGGAAGTAAGATTCCCTGTTGTAGCTT
* * * *** * * * * *
15667594 TAATCTTTTTAACTTCAATATCGAAAAAACAAGATACGCCATCTTAGCTTTAATCTGTTCCACTA
64 TAATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAT-TTGGCTTTAATCTGTTCCACTG
* * *
15667659 CACCGCTTGGGAGATAAGAT
128 CACCGCCTAGGAGGTAAGAT
15667679 CTATAATTCT
Statistics
Matches: 306, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
198 1 0.00
199 4 0.01
200 297 0.97
201 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (199 bp):
ACCGATGTGGCTTTAATCTGTTCCACTGCACCATCAGGGAAGTAAGATTCCCTGTTGTAGCTTTA
ATCTCTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTTGGCTTTAATCTGTTCCACTGCAC
CGCCTAGGAGGTAAGATTCGCTGCTGTAGCATTAATCTTTTAAACTGCAATGTCAGGAAGGCAAG
ATTC
Found at i:15671376 original size:28 final size:28
Alignment explanation
Indices: 15671344--15671399 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
15671334 GGTAAGTTAA
*
15671344 AATCACGTTGGTCCAGTCAATTTATGAT
1 AATCAAGTTGGTCCAGTCAATTTATGAT
15671372 AATCAAGTTGGTCCAGTCAATTTATGAT
1 AATCAAGTTGGTCCAGTCAATTTATGAT
15671400 TCATCGAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (28 bp):
AATCAAGTTGGTCCAGTCAATTTATGAT
Found at i:15671872 original size:29 final size:30
Alignment explanation
Indices: 15671821--15671882 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
15671811 TGAATTATTT
*
15671821 TTAAAAATTTGGTTGCTCTTTTTGTAAATA
1 TTAAAAATTTGGATGCTCTTTTTGTAAATA
15671851 TTAAAAA-TTGGATGTCTCTTTTTGTAAATA
1 TTAAAAATTTGGATG-CTCTTTTTGTAAATA
15671881 TT
1 TT
15671883 TTCAAAAAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.50
Consensus pattern (30 bp):
TTAAAAATTTGGATGCTCTTTTTGTAAATA
Found at i:15675725 original size:18 final size:19
Alignment explanation
Indices: 15675697--15675733 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15675687 GCATTCACAT
15675697 CTTTCCTCTCTTCTCTCCA
1 CTTTCCTCTCTTCTCTCCA
*
15675716 CTTT-CTCTCTTCTTTCCA
1 CTTTCCTCTCTTCTCTCCA
15675734 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTCCTCTCTTCTCTCCA
Found at i:15688770 original size:27 final size:28
Alignment explanation
Indices: 15688740--15688944 Score: 226
Period size: 27 Copynumber: 7.6 Consensus size: 28
15688730 GTAATGGGCC
* * *
15688740 TAAAATGGCTAAAATGCCCTCGAAA-GG
1 TAAAATGACTGAAATACCCTCGAAAGGG
**
15688767 TAAAATGACCAAAATACCCTCG-AAGGG
1 TAAAATGACTGAAATACCCTCGAAAGGG
* *
15688794 TAAAATGACTGAAACACCCTTG-AAGGG
1 TAAAATGACTGAAATACCCTCGAAAGGG
* * *
15688821 TAAAATGACCGAAACACCCT-TAAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGGG
15688848 TAAAATGACTGAAATACCCTC-AAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGGG
15688875 TAAAATGACTGAAATACCCTC-AAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGGG
* * **
15688902 TAAAATGACCGAAATACCCTTG-AAGCA
1 TAAAATGACTGAAATACCCTCGAAAGGG
*
15688929 TAAAATGTCTGAAATA
1 TAAAATGACTGAAATA
15688945 AACTGATCAA
Statistics
Matches: 157, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 155 0.99
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (28 bp):
TAAAATGACTGAAATACCCTCGAAAGGG
Found at i:15688827 original size:54 final size:54
Alignment explanation
Indices: 15688751--15689165 Score: 347
Period size: 54 Copynumber: 7.5 Consensus size: 54
15688741 AAAATGGCTA
* * * * *
15688751 AAATGCCCTCGAAAGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCG
* * * * *
15688805 AAACACCCTTGAAGGGTAAAATGACCGAAACACCCTTAAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCG
* *
15688859 AAATACCCTCAAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCG
* ** * *
15688913 AAATACCCTTGAAGCATAAAATGTCTGAAATAAACTGATCAAAATACCCTCGAAA-GGTAAAATG
1 AAATACCCTCGAAGGGTAAAA----TG------ACCGA--AAT--ACCCTC-AAAGGGTAAAATG
*
15688977 ACTG
51 ACCG
* *
15688981 AAATACCCT-GAAGGGTAAAATGACCGAAATGCCC-CGAAA-GATAAAATGACCG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTC-AAAGGGTAAAATGACCG
* * * * **
15689033 AAATACCCTCAAAAGGTAACATGACCGAAATACCCTCGAAGGGTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCG
* * *
15689087 AAATACCCTCAAAGGGTAAAATGACCAAAATACCC-CAAAAGGGTAAAATTACCG
1 AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTC-AAAGGGTAAAATGACCG
**
15689141 AAATAACCCTATAA-GGTAAAATGAC
1 AAAT-ACCCTCGAAGGGTAAAATGAC
15689166 TGCTATACCC
Statistics
Matches: 296, Mismatches: 45, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
52 25 0.08
53 27 0.09
54 181 0.61
55 9 0.03
57 4 0.01
58 2 0.01
63 2 0.01
64 5 0.02
66 2 0.01
67 9 0.03
68 27 0.09
69 3 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (54 bp):
AAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCG
Found at i:15688875 original size:81 final size:81
Alignment explanation
Indices: 15688765--15689165 Score: 364
Period size: 81 Copynumber: 4.8 Consensus size: 81
15688755 GCCCTCGAAA
* * *
15688765 GGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAACACCCTTGAAGGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGAC
*
15688830 CGAAACACCCTTAAAG
66 CGAAATACCCTTAAAG
* **
15688846 GGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGAC
*
15688911 CGAAATACCCTTGAAG
66 CGAAATACCCTTAAAG
** * *
15688927 CATAAAATGTCTGAAATAAACTGATCAAAATACCCTCGAAA-GGTAAAATGACTGAAATACCC-T
1 GGTAAAA----TG------ACCGA--AAT--ACCCTC-AAAGGGTAAAATGACTGAAATACCCTT
* **
15688990 GAAGGGTAAAATGACCGAAATGCCCCGAAA-
51 GAAGGGTAAAATGACCGAAATACCCTTAAAG
* * * * *
15689020 GATAAAATGACCGAAATACCCTCAAAAGGTAACATGACCGAAATACCCTCGAAGGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGAC
** *
15689085 TAAAATACCCTCAAAG
66 CGAAATACCCTTAAAG
* * *
15689101 GGTAAAATGACCAAAATACCC-CAAAAGGGTAAAATTACCGAAATAACCCTAT-AA-GGTAAAAT
1 GGTAAAATGACCGAAATACCCTC-AAAGGGTAAAATGACTGAAAT-ACCCT-TGAAGGGTAAAAT
15689163 GAC
63 GAC
15689166 TGCTATACCC
Statistics
Matches: 265, Mismatches: 34, Indels: 42
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.01
79 25 0.09
80 26 0.10
81 128 0.48
82 7 0.03
83 4 0.02
85 2 0.01
89 2 0.01
91 5 0.02
93 8 0.03
94 25 0.09
95 27 0.10
96 3 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (81 bp):
GGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGAC
CGAAATACCCTTAAAG
Found at i:15689002 original size:26 final size:27
Alignment explanation
Indices: 15688954--15689165 Score: 238
Period size: 27 Copynumber: 7.9 Consensus size: 27
15688944 AAACTGATCA
*
15688954 AAATACCCTCGAAAGGTAAAATGACTG
1 AAATACCCTCGAAAGGTAAAATGACCG
*
15688981 AAATACCCT-GAAGGGTAAAATGACCG
1 AAATACCCTCGAAAGGTAAAATGACCG
* *
15689007 AAATGCCC-CGAAAGATAAAATGACCG
1 AAATACCCTCGAAAGGTAAAATGACCG
* *
15689033 AAATACCCTCAAAAGGTAACATGACCG
1 AAATACCCTCGAAAGGTAAAATGACCG
* **
15689060 AAATACCCTCGAAGGGTAAAATGACTA
1 AAATACCCTCGAAAGGTAAAATGACCG
*
15689087 AAATACCCTC-AAAGGGTAAAATGACCA
1 AAATACCCTCGAAA-GGTAAAATGACCG
* *
15689114 AAATACCC-CAAAAGGGTAAAATTACCG
1 AAATACCCTCGAAA-GGTAAAATGACCG
15689141 AAATAACCCT--ATAAGGTAAAATGAC
1 AAAT-ACCCTCGA-AAGGTAAAATGAC
15689166 TGCTATACCC
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
26 47 0.30
27 106 0.67
28 6 0.04
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.16
Consensus pattern (27 bp):
AAATACCCTCGAAAGGTAAAATGACCG
Found at i:15712265 original size:79 final size:79
Alignment explanation
Indices: 15712129--15712346 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
15712119 TTGAATGATG
* * * ** *
15712129 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCAAT
15712193 TGTGCGAGATACTA-A
64 TGTGCGAGATACTATA
*
15712208 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCAAT
*
15712272 TGTGCGAGTTACTATA
64 TGTGCGAGATACTATA
* * * * *
15712288 ACCGGGCTATGTCCCGAAGGCATTTTTACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
15712347 TACGTGATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 70 0.59
80 47 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAATTG
TGCGAGATACTATA
Found at i:15712327 original size:40 final size:40
Alignment explanation
Indices: 15712130--15712312 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
15712120 TGAATGATGT
* * * *
15712130 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
15712170 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
15712210 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
15712248 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15712289 CCGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
15712313 TTACGAGTAG
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:15721674 original size:79 final size:79
Alignment explanation
Indices: 15721543--15721857 Score: 603
Period size: 79 Copynumber: 4.0 Consensus size: 79
15721533 CTAATTATAA
15721543 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
15721608 TCTTCTAAACTCAG
66 TCTTCTAAACTCAG
15721622 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
15721687 TCTTCTAAACTCAG
66 TCTTCTAAACTCAG
15721701 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
15721766 TCTTCTAAACTCAG
66 TCTTCTAAACTCAG
* *
15721780 AAAATCCTAAATATTCATGCAATTCTGACTATAGTAAATACATCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
*
15721845 TCTTATAAACTCA
66 TCTTCTAAACTCA
15721858 ATTTTTGTAT
Statistics
Matches: 233, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 233 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (79 bp):
AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
TCTTCTAAACTCAG
Found at i:15730278 original size:18 final size:19
Alignment explanation
Indices: 15730249--15730285 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15730239 GCATTCGCAT
15730249 CTTTCTTCTCTTCTCTCCA
1 CTTTCTTCTCTTCTCTCCA
*
15730268 CTTTC-TCTCTTCTTTCCA
1 CTTTCTTCTCTTCTCTCCA
15730286 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.05, C:0.41, G:0.00, T:0.54
Consensus pattern (19 bp):
CTTTCTTCTCTTCTCTCCA
Found at i:15734222 original size:25 final size:25
Alignment explanation
Indices: 15734187--15734237 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
15734177 GTTCTTCAAG
*
15734187 TTTGTGCTTGCTGCCCCTTGTTCTT
1 TTTGTGCTTGCCGCCCCTTGTTCTT
*
15734212 TTTGTGTTTGCCGCCCCTTGTTCTT
1 TTTGTGCTTGCCGCCCCTTGTTCTT
15734237 T
1 T
15734238 CCCTCACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.00, C:0.27, G:0.20, T:0.53
Consensus pattern (25 bp):
TTTGTGCTTGCCGCCCCTTGTTCTT
Found at i:15752083 original size:149 final size:149
Alignment explanation
Indices: 15751813--15752117 Score: 565
Period size: 149 Copynumber: 2.0 Consensus size: 149
15751803 AGATTGAACG
* *
15751813 AGTCAAAGTGAGTCCTCAACATCAGACCTCAATTTCTTACTTTATATTATTTAATGTTCGACCTT
1 AGTCAAAGTGAGTCCTCAACATCAGACCTCAATTTCTTACTTTATACTATTTAATGCTCGACCTT
*
15751878 AAACGAGTCATTTCAAATAATGCCTGAGCTGATTCATACTAAAAACGTGGTGGTCGTAAGACGAC
66 AAACGAGTCATTTCAAAGAATGCCTGAGCTGATTCATACTAAAAACGTGGTGGTCGTAAGACGAC
15751943 AAGGATTATGGAATTAGAT
131 AAGGATTATGGAATTAGAT
15751962 AGTCAAAGTGAGTCCTCAACATCAGACCTCAATTTCTTACTTTATACTATTTAATGCTCGACCTT
1 AGTCAAAGTGAGTCCTCAACATCAGACCTCAATTTCTTACTTTATACTATTTAATGCTCGACCTT
* *
15752027 AAACGAGTCATTTCAAAGCATGCCTTAGCTGATTCATACTAAAAACGTGGTGGTCGTAAGACGAC
66 AAACGAGTCATTTCAAAGAATGCCTGAGCTGATTCATACTAAAAACGTGGTGGTCGTAAGACGAC
15752092 AAGGATTATGGAATTAGAT
131 AAGGATTATGGAATTAGAT
15752111 AGTCAAA
1 AGTCAAA
15752118 CTGACTTCTT
Statistics
Matches: 151, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (149 bp):
AGTCAAAGTGAGTCCTCAACATCAGACCTCAATTTCTTACTTTATACTATTTAATGCTCGACCTT
AAACGAGTCATTTCAAAGAATGCCTGAGCTGATTCATACTAAAAACGTGGTGGTCGTAAGACGAC
AAGGATTATGGAATTAGAT
Found at i:15753400 original size:3 final size:3
Alignment explanation
Indices: 15753392--15753437 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
15753382 AACTGGTTTC
* *
15753392 TCT TCT TCT TCT TCT T-T TCC TCT TCT TCT TC- TCC TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
15753438 ACTACCTAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:15753415 original size:14 final size:14
Alignment explanation
Indices: 15753398--15753437 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
15753388 TTTCTCTTCT
*
15753398 TCTTCTTCTTTTCC
1 TCTTCTTCTTCTCC
15753412 TCTTCTTCTTCTCC
1 TCTTCTTCTTCTCC
15753426 TCTTCTTCTTCT
1 TCTTCTTCTTCT
15753438 ACTACCTAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTCTTCTTCTCC
Found at i:15753417 original size:17 final size:15
Alignment explanation
Indices: 15753392--15753437 Score: 69
Period size: 14 Copynumber: 3.2 Consensus size: 15
15753382 AACTGGTTTC
*
15753392 TCTTCTTCTTCTTCT
1 TCTTCCTCTTCTTCT
15753407 T-TTCCTCTTCTTCT
1 TCTTCCTCTTCTTCT
15753421 TC-TCCTCTTCTTCT
1 TCTTCCTCTTCTTCT
15753435 TCT
1 TCT
15753438 ACTACCTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 27 0.96
15 1 0.04
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (15 bp):
TCTTCCTCTTCTTCT
Found at i:15757350 original size:30 final size:30
Alignment explanation
Indices: 15757315--15757392 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
15757305 GTAATCTAAC
* *
15757315 ATGTGAGCCCTTGTGGCAAGAACTTGTTAT
1 ATGTGAGCCATTGTGGCAAGAACTTGATAT
* **
15757345 ATGTGAGCCTTTGTGGTGAGAACTTGATAT
1 ATGTGAGCCATTGTGGCAAGAACTTGATAT
*
15757375 ATATGAGCCATTGTGGCA
1 ATGTGAGCCATTGTGGCA
15757393 TAATTATGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.33
Consensus pattern (30 bp):
ATGTGAGCCATTGTGGCAAGAACTTGATAT
Found at i:15760036 original size:16 final size:17
Alignment explanation
Indices: 15760009--15760045 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
15759999 ATAACGAATT
*
15760009 ATATTGATAAATTTGAA
1 ATATTGATAAATTTAAA
15760026 ATATTGA-AAATTTAAA
1 ATATTGATAAATTTAAA
15760042 ATAT
1 ATAT
15760046 GAGTTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (17 bp):
ATATTGATAAATTTAAA
Found at i:15761533 original size:222 final size:221
Alignment explanation
Indices: 15761139--15761572 Score: 742
Period size: 222 Copynumber: 2.0 Consensus size: 221
15761129 CGCTACAAGC
* *
15761139 CATTCCTTGTGCCTTCGATTGCCATCGATCCATCTTCTCTTTATCATGCACTCTTTTTTGAAAAA
1 CATTCCTTGTGACTTCGATTGCCATCGATCCATCTTCTCTTTATCATGCACTCCTTTTTGAAAAA
*
15761204 AATTAAATTTATATCCTATGTTCATTTCCGGCTCACAAGAATTCTATAAATAAAAAATAATCCTA
66 AAGTAAATTTATATCCTATGTTCATTTCCGGCTCACAAGAATTCTATAAATAAAAAATAATCCTA
* * * *
15761269 TGTGAAGATGATAGCCCACGGTCTATTTCCTAAGAGCCACAACCTTGGCAAAAATAATAATTATA
131 CGTAAAAATGATAGCCCACGGTCTATTTCCTAAGAACCACAACCTTGGCAAAAATAATAATTATA
15761334 TAACAAATATATATAATGCCAGAAAG
196 TAACAAATATATATAATGCCAGAAAG
* *
15761360 CATTCCTTGTGATTTCGATTGCCATTGATCCATCTTCTCTTTATCATGCACTCCTTTTTGAAAAA
1 CATTCCTTGTGACTTCGATTGCCATCGATCCATCTTCTCTTTATCATGCACTCCTTTTTG-AAAA
* * *
15761425 AAAGTACATTTATATCCTATGTTCGTTTCCGGCTCATAAGAATTCTATAAATAAAAAATAATCCT
65 AAAGTAAATTTATATCCTATGTTCATTTCCGGCTCACAAGAATTCTATAAATAAAAAATAATCCT
*
15761490 ACGTAAAAATGATAGCCCACGGTCTATTTCTTAAGAACCACAACCTTGGCAAAAATAATAATTAT
130 ACGTAAAAATGATAGCCCACGGTCTATTTCCTAAGAACCACAACCTTGGCAAAAATAATAATTAT
15761555 ATAACAAATATATATAAT
195 ATAACAAATATATATAAT
15761573 ATTATATTCA
Statistics
Matches: 199, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
221 56 0.28
222 143 0.72
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (221 bp):
CATTCCTTGTGACTTCGATTGCCATCGATCCATCTTCTCTTTATCATGCACTCCTTTTTGAAAAA
AAGTAAATTTATATCCTATGTTCATTTCCGGCTCACAAGAATTCTATAAATAAAAAATAATCCTA
CGTAAAAATGATAGCCCACGGTCTATTTCCTAAGAACCACAACCTTGGCAAAAATAATAATTATA
TAACAAATATATATAATGCCAGAAAG
Found at i:15767725 original size:28 final size:28
Alignment explanation
Indices: 15767692--15767775 Score: 141
Period size: 28 Copynumber: 3.0 Consensus size: 28
15767682 GTAACAGTAC
*
15767692 AATGTGGGCTTTAGCCTAATACAGTAAT
1 AATGTGGGCCTTAGCCTAATACAGTAAT
* *
15767720 AATGTGGGCCTTAGCCCAATACAGTAAC
1 AATGTGGGCCTTAGCCTAATACAGTAAT
15767748 AATGTGGGCCTTAGCCTAATACAGTAAT
1 AATGTGGGCCTTAGCCTAATACAGTAAT
15767776 CAGTACAATG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (28 bp):
AATGTGGGCCTTAGCCTAATACAGTAAT
Found at i:15768190 original size:27 final size:27
Alignment explanation
Indices: 15768168--15768832 Score: 374
Period size: 27 Copynumber: 25.0 Consensus size: 27
15768158 AGGGGTATAA
15768168 CAATCATTTTACCCTATGAGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
15768195 CAATCATTTTACCCTATG-GGAGTATTT
1 CAATCATTTTACCCTATGAGG-GTATTT
** *
15768222 CGGTCATTTTACCCGAT-AGGGGTATTT
1 CAATCATTTTACCCTATGA-GGGTATTT
** *
15768249 CGGTCATTTTACCCTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* * *
15768276 CGATCACTTTACCCTGTGAGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* * * *
15768303 CAGTCATTCTACCTTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* * *
15768330 CAGTCATTCTACCCTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* *
15768357 CGATCATTTTACCCTATGTA-GATATTT
1 CAATCATTTTACCCTATG-AGGGTATTT
*** * *
15768384 CGGCCATTTTACCCTATGGGGGTTTTT
1 CAATCATTTTACCCTATGAGGGTATTT
* *
15768411 C-GTCATTCTACCCTATGAGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* * *
15768437 CAGTCATTATGCCCTATG-GGGATATTT
1 CAATCATTTTACCCTATGAGGG-TATTT
*** * * * *
15768464 TGGTCATTCTACGCTATGGGGGTAATT
1 CAATCATTTTACCCTATGAGGGTATTT
* * *
15768491 CGATCATTCTACCCTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
** *
15768518 CGGTCA-TTTACCCTAT-AGGGGTAATT
1 CAATCATTTTACCCTATGA-GGGTATTT
** ** * *
15768544 CGGTCATTCGACCCTATGGGGGTAATT
1 CAATCATTTTACCCTATGAGGGTATTT
* * *
15768571 CGATCATTCTACCCTATG-GGGTAATT
1 CAATCATTTTACCCTATGAGGGTATTT
** * * *
15768597 CGGTCATTCTACCCTATGGGGGTAATT
1 CAATCATTTTACCCTATGAGGGTATTT
* * * *
15768624 CGATCATTCTACCCTATGGGGGTGTTT
1 CAATCATTTTACCCTATGAGGGTATTT
* *
15768651 CGATCA--TT---CTA--CGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
* *
15768671 CGATCATTCTACCCTAT-AGAGGTATTT
1 CAATCATTTTACCCTATGAG-GGTATTT
** * *
15768698 CGGTCATTCTACCCTATGAGGGTAATT
1 CAATCATTTTACCCTATGAGGGTATTT
** * *
15768725 CGGTCATTCTACCCTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
** * * *
15768752 CGGTCATTCTACCCTATGGGGGAATTT
1 CAATCATTTTACCCTATGAGGGTATTT
*** * *
15768779 TTTTCATTCTACCCTATG-GGTTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
*** * * *
15768805 TGGTCATTCTACCTTATGGGGGTATTT
1 CAATCATTTTACCCTATGAGGGTATTT
15768832 C
1 C
15768833 GGTCATAACA
Statistics
Matches: 540, Mismatches: 76, Indels: 44
0.82 0.12 0.07
Matches are distributed among these distances:
20 13 0.02
22 4 0.01
25 4 0.01
26 96 0.18
27 416 0.77
28 7 0.01
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.38
Consensus pattern (27 bp):
CAATCATTTTACCCTATGAGGGTATTT
Found at i:15768234 original size:54 final size:54
Alignment explanation
Indices: 15768171--15768838 Score: 748
Period size: 54 Copynumber: 12.6 Consensus size: 54
15768161 GGTATAACAA
* * ** * *
15768171 TCATTTTACCCTATGAGGGTATTTCAATCATTTTACCCTATGGGAGTATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * * *
15768225 TCATTTTACCCGATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGA
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * * *
15768279 TCACTT-TACCCTGTGAGGGTATTTCAGTCATTCTACCTTATGGGGGTATTTCAG
1 TCA-TTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * ** *
15768333 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGTAGATATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * * *
15768387 CCATTTTACCCTATGGGGGTTTTTC-GTCATTCTACCCTATGAGGGTATTTCAG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * * * * *
15768440 TCATTATGCCCTATGGGGATATTTTGGTCATTCTACGCTATGGGGGTAATTCGA
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* *
15768494 TCATTCTACCCTATGGGGGTATTTCGGTCATT-TACCCTATAGGGGTAATTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * *
15768547 TCATTCGACCCTATGGGGGTAATTCGATCATTCTACCCTAT-GGGGTAATTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * * *
15768600 TCATTCTACCCTATGGGGGTAATTCGATCATTCTACCCTATGGGGGTGTTTCGA
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* * *
15768654 TCATTCTA--C-----GGGTATTTCGATCATTCTACCCTATAGAGGTATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* *
15768701 TCATTCTACCCTATGAGGGTAATTCGGTCATTCTACCCTATGGGGGTATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
* *** * *
15768755 TCATTCTACCCTATGGGGGAATTTTTTTCATTCTACCCTAT-GGGTTATTTTGG
1 TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
*
15768808 TCATTCTACCTTATGGGGGTATTTCGGTCAT
1 TCATTCTACCCTATGGGGGTATTTCGGTCAT
15768839 AACAGTGTAA
Statistics
Matches: 520, Mismatches: 82, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
47 41 0.08
49 1 0.00
52 1 0.00
53 178 0.34
54 297 0.57
55 2 0.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.38
Consensus pattern (54 bp):
TCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTCGG
Found at i:15768243 original size:81 final size:80
Alignment explanation
Indices: 15768159--15768838 Score: 654
Period size: 81 Copynumber: 8.5 Consensus size: 80
15768149 TCATATCCTA
* * * * *
15768159 GGGGTATAACAATCATTTTACCCTATGAGGGTATTTCAATCATTTTACCCTATGGGAGTATTTCG
1 GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGG-GTATTTCG
* * *
15768224 GTCATTTTACCCGATA
65 GTCATTCTACCCTATG
* * * * * *
15768240 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCACTTTACCCTGTGAGGGTATTTCA
1 GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATG-GGGTATTTCG
*
15768305 GTCATTCTACCTTATG
65 GTCATTCTACCCTATG
* * *
15768321 GGGGTATTTC-AGTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGTAGATATTTC
1 GGGGTATATCGA-TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATG-GGGTATTTC
* *
15768385 GGCCATTTTACCCTATG
64 GGTCATTCTACCCTATG
* * * * * *
15768402 GGGGTTTTTCG-TCATTCTACCCTATGAGGGTATTTC-AGTCATTATGCCCTATGGGGATATTTT
1 GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATGGGG-TATTTC
*
15768465 GGTCATTCTACGCTATG
64 GGTCATTCTACCCTATG
* *
15768482 GGGGTA-ATTCGATCATTCTACCCTATGGGGGTATTTCGGTCA-TTTACCCTATAGGGGTAATTC
1 GGGGTATA-TCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTC
*
15768545 GGTCATTCGACCCTATG
64 GGTCATTCTACCCTATG
* * * *
15768562 GGGGTA-ATTCGATCATTCTACCCTAT-GGGGTAATTCGGTCATTCTACCCTATGGGGGTAATTC
1 GGGGTATA-TCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTC
*
15768625 GATCATTCTACCCTATG
64 GGTCATTCTACCCTATG
* * * *
15768642 GGGGTGTTTCGATCATTCTA--C-----GGGTATTTCGATCATTCTACCCTATAGAGGTATTTCG
1 GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTCG
15768700 GTCATTCTACCCTATG
65 GTCATTCTACCCTATG
* * * * * *
15768716 AGGGTA-ATTCGGTCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGGAATTTT
1 GGGGTATA-TCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTC
**
15768780 TTTCATTCTACCCTAT-
64 GGTCATTCTACCCTATG
* * * * * *
15768796 GGGTTATTTTGGTCATTCTACCTTATGGGGGTATTTCGGTCAT
1 GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGATCAT
15768839 AACAGTGTAA
Statistics
Matches: 506, Mismatches: 73, Indels: 41
0.82 0.12 0.07
Matches are distributed among these distances:
74 62 0.12
76 1 0.00
78 1 0.00
79 16 0.03
80 205 0.41
81 219 0.43
82 2 0.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (80 bp):
GGGGTATATCGATCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGTATTTCGG
TCATTCTACCCTATG
Found at i:15768671 original size:20 final size:20
Alignment explanation
Indices: 15768643--15768682 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
15768633 TACCCTATGG
*
15768643 GGGTGTTTCGATCATTCTAC
1 GGGTATTTCGATCATTCTAC
15768663 GGGTATTTCGATCATTCTAC
1 GGGTATTTCGATCATTCTAC
15768683 CCTATAGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (20 bp):
GGGTATTTCGATCATTCTAC
Found at i:15768722 original size:101 final size:100
Alignment explanation
Indices: 15768171--15768763 Score: 397
Period size: 107 Copynumber: 5.6 Consensus size: 100
15768161 GGTATAACAA
* * * * * *
15768171 TCATTTTACCCTATGAGGGTATTTCAATCATTTTACCCTATGGGAGTATTTCGGTCATTTTACCC
1 TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGATCA--TT---C
* * * * * * *
15768236 GATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGA
61 --TACGGGTAATTCGATCATTCTACCCTAT-GAGGTAATTCGG
* * *
15768279 TCACTT-TACCCTGTGAGGGTATTTC-AGTCATTCTACCTTATGGGGGTATTTC-AGTCATTCTA
1 TCA-TTCTACCCTATGAGGGTAATTCGA-TCATTCTACCCTATGGGGGTATTTCGA-TCATTCTA
* * * *
15768341 CCCTATGGGGGTATTTCGATCATTTTACCCTATGTAGATATTTCGG
63 --C-----GGGTAATTCGATCATTCTACCCTATG-AGGTAATTCGG
* * * ** *
15768387 CCATTTTACCCTATGGGGGTTTTTCG-TCATTCTACCCTATGAGGGTATTTC-AGTCATTATGCC
1 TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGA-TCA-T-T---
* * * * * * *
15768450 CTATGGGGATATTTTGGTCATTCTACGCTATGGGGGTAATTCGA
60 CTA-CGGG-TAATTCGATCATTCTACCCTAT-GAGGTAATTCGG
* * * * * *
15768494 TCATTCTACCCTATGGGGGTATTTCGGTCATT-TACCCTATAGGGGTAATTCGGTCATTCGACCC
1 TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGATCATT-----C
* *
15768558 TATGGGGGTAATTCGATCATTCTACCCTATGGGGTAATTCGG
61 TA--CGGGTAATTCGATCATTCTACCCTATGAGGTAATTCGG
* *
15768600 TCATTCTACCCTATGGGGGTAATTCGATCATTCTACCCTATGGGGGTGTTTCGATCATTCTACGG
1 TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGATCATTCTACGG
* *
15768665 GTATTTCGATCATTCTACCCTATAGAGGTATTTCGG
66 GTAATTCGATCATTCTACCCTAT-GAGGTAATTCGG
* *
15768701 TCATTCTACCCTATGAGGGTAATTCGGTCATTCTACCCTATGGGGGTATTTCGGTCATTCTAC
1 TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGATCATTCTAC
15768764 CCTATGGGGG
Statistics
Matches: 404, Mismatches: 54, Indels: 61
0.78 0.10 0.12
Matches are distributed among these distances:
100 24 0.06
101 71 0.18
102 3 0.01
103 1 0.00
105 1 0.00
106 47 0.12
107 144 0.36
108 107 0.26
109 3 0.01
112 3 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (100 bp):
TCATTCTACCCTATGAGGGTAATTCGATCATTCTACCCTATGGGGGTATTTCGATCATTCTACGG
GTAATTCGATCATTCTACCCTATGAGGTAATTCGG
Found at i:15777304 original size:24 final size:24
Alignment explanation
Indices: 15777271--15777327 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
15777261 AAACCTAATT
* *
15777271 CTAATCAATGTCAAATATATTATG
1 CTAATAAATGTCAAATATATTATA
*
15777295 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATTATA
15777319 CTAATAAAT
1 CTAATAAAT
15777328 ATTAAATCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATTATA
Found at i:15777332 original size:24 final size:24
Alignment explanation
Indices: 15777283--15777334 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
15777273 AATCAATGTC
* *
15777283 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATATT
15777307 AAATATATTATACTAATAAATATT
1 AAATATATTATACTAATAAATATT
15777331 AAAT
1 AAAT
15777335 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATATT
Found at i:15780904 original size:42 final size:42
Alignment explanation
Indices: 15780821--15780908 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
15780811 ATGACCTACC
** * * *
15780821 ACACGGCCTGCGACACGGTTGTGTGTCACAAGTTAGAGAGTT
1 ACACGGCCTGCGACACGGTCATGTGACACAACTCAGAGAGTT
*
15780863 ACACGGCCTGCGACACGGTCATGTGAC-CTAACTCAGTGAGTT
1 ACACGGCCTGCGACACGGTCATGTGACAC-AACTCAGAGAGTT
15780905 ACAC
1 ACAC
15780909 TGTTTGAGAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.03
42 38 0.97
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (42 bp):
ACACGGCCTGCGACACGGTCATGTGACACAACTCAGAGAGTT
Found at i:15788005 original size:12 final size:13
Alignment explanation
Indices: 15787980--15788016 Score: 53
Period size: 11 Copynumber: 3.1 Consensus size: 13
15787970 AGTGATTTCA
15787980 TTTA-GTTTTATT
1 TTTATGTTTTATT
15787992 TTT-TG-TTTATT
1 TTTATGTTTTATT
15788003 TTTATGTTTTATT
1 TTTATGTTTTATT
15788016 T
1 T
15788017 GTTAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 9 0.41
12 6 0.27
13 7 0.32
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (13 bp):
TTTATGTTTTATT
Found at i:15788031 original size:24 final size:24
Alignment explanation
Indices: 15787980--15788029 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
15787970 AGTGATTTCA
**
15787980 TTTA-GTTTTATTTTTTGTTTATT
1 TTTATGTTTTATTTTTAATTTATT
15788003 TTTATGTTTTATTTGTTAATTTATT
1 TTTATGTTTTATTT-TTAATTTATT
15788028 TT
1 TT
15788030 ATTTTTCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 9 0.39
25 10 0.43
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (24 bp):
TTTATGTTTTATTTTTAATTTATT
Found at i:15788044 original size:30 final size:31
Alignment explanation
Indices: 15787997--15788064 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
15787987 TTATTTTTTG
* *
15787997 TTTATTTTTATGTTTTATTTG-TTAATTTAT
1 TTTATTTTTATGATTTATATGCTTAATTTAT
*
15788027 TTTATTTTTCA-GATTTATATGCTTTATTTTAT
1 TTTATTTTT-ATGATTTATATGC-TTAATTTAT
15788059 TTTATT
1 TTTATT
15788065 ATGTACTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 17 0.53
31 1 0.03
32 14 0.44
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (31 bp):
TTTATTTTTATGATTTATATGCTTAATTTAT
Found at i:15788991 original size:16 final size:18
Alignment explanation
Indices: 15788958--15788993 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
15788948 TTGTTCGAAA
15788958 AAAAATGTAAACAAAATT
1 AAAAATGTAAACAAAATT
15788976 AAAAAT-TAAA-AAAATT
1 AAAAATGTAAACAAAATT
15788992 AA
1 AA
15788994 TTGAGCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (18 bp):
AAAAATGTAAACAAAATT
Found at i:15808493 original size:24 final size:23
Alignment explanation
Indices: 15808466--15808510 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
15808456 CTCAATATTG
15808466 TATTTATTAAGTTTTATATTTTTC
1 TATTTATTAAGTTTTA-ATTTTTC
* *
15808490 TATTTATTTATTTTTAATTTT
1 TATTTATTAAGTTTTAATTTT
15808511 AGGATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (23 bp):
TATTTATTAAGTTTTAATTTTTC
Found at i:15816963 original size:30 final size:30
Alignment explanation
Indices: 15816779--15816962 Score: 305
Period size: 30 Copynumber: 6.1 Consensus size: 30
15816769 TTTTATTATG
*
15816779 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
15816810 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
15816840 CCATTATTCGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
15816870 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
15816900 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
15816930 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
15816960 CCA
1 CCA
15816963 TAAATATGGA
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
30 137 0.95
31 7 0.05
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:15821528 original size:30 final size:30
Alignment explanation
Indices: 15821482--15821605 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
15821472 TTTTATTATG
*
15821482 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
15821513 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
15821543 CTAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
15821573 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
15821603 CCA
1 CCA
15821606 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:15821537 original size:15 final size:15
Alignment explanation
Indices: 15821492--15821599 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
15821482 CCAATATCTC
15821492 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
15821507 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
15821522 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
15821537 GACTTTCTA-ATATTT
1 GA-TACCCATATCTTT
15821552 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
15821567 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
15821582 GATACCCATATCTTT
1 GATACCCATATCTTT
15821597 GAT
1 GAT
15821600 TTTCCATAAA
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:15838272 original size:13 final size:13
Alignment explanation
Indices: 15838256--15838280 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15838246 TGTTTATAAT
15838256 ATGTATGTATATC
1 ATGTATGTATATC
15838269 ATGTATGTATAT
1 ATGTATGTATAT
15838281 TACAATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
ATGTATGTATATC
Found at i:15846957 original size:32 final size:32
Alignment explanation
Indices: 15846915--15846975 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
15846905 TTTTTTGAAA
15846915 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
15846947 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
15846976 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:15846968 original size:20 final size:20
Alignment explanation
Indices: 15846934--15846975 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
15846924 AACTATTTAA
** *
15846934 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
15846954 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
15846974 AT
1 AT
15846976 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:15853086 original size:114 final size:113
Alignment explanation
Indices: 15852879--15853114 Score: 393
Period size: 114 Copynumber: 2.1 Consensus size: 113
15852869 ATAAATACTC
* *
15852879 AAGTATTG-AGGAGTATTGTTAGGCATAAAGCTTCAAATTAAGTTTGGGGGTGGTAAAACTCGTT
1 AAGTATTGAAGGAGTATTGTTAGGAATAAAGCTTCAAATTAAGTTTGGGGGTGGTAAAACCCGTT
*
15852943 AGTAGGAAGCATGTACCTTGAAAGGATCCAAGACAAAGTTAGGGTTAA
66 AGTAGGAAGCATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAA
*
15852991 AAGTATTGAAGGAGTATTGTTGGGAATAAAGCTTCAAATTAAGTTTGGAGGGTGGTAAAACCCGT
1 AAGTATTGAAGGAGTATTGTTAGGAATAAAGCTTCAAATTAAGTTTGG-GGGTGGTAAAACCCGT
*
15853056 TAGTAGGAAGGATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAA
65 TAGTAGGAAGCATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAA
* *
15853105 GATTATTGAA
1 AAGTATTGAA
15853115 CCTAAAAATT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
112 8 0.07
113 37 0.32
114 70 0.61
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (113 bp):
AAGTATTGAAGGAGTATTGTTAGGAATAAAGCTTCAAATTAAGTTTGGGGGTGGTAAAACCCGTT
AGTAGGAAGCATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAA
Found at i:15858165 original size:15 final size:15
Alignment explanation
Indices: 15858142--15858177 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
15858132 TTACAGAGTA
* *
15858142 CACCTACTCTTGCTC
1 CACCAACTCTTACTC
15858157 CACCAACTCTTACTC
1 CACCAACTCTTACTC
15858172 CACCAA
1 CACCAA
15858178 TTGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.25
Consensus pattern (15 bp):
CACCAACTCTTACTC
Found at i:15859266 original size:35 final size:36
Alignment explanation
Indices: 15859227--15859336 Score: 143
Period size: 38 Copynumber: 3.0 Consensus size: 36
15859217 TCTTAAACCG
* * *
15859227 ATCTTAAACCCAAATTGTAACAAAATGTTA-AATAC
1 ATCTTAAACCCAAATTGCAACAAAATGTAAGAACAC
*
15859262 ATCTTAAACCCAAATTGCAACAAAACATCTAAGAACAC
1 ATCTTAAACCCAAATTGCAAC-AAA-ATGTAAGAACAC
15859300 ATCTTAAACCCAAATTGCAACAAAATGTCAA-AACAC
1 ATCTTAAACCCAAATTGCAACAAAATGT-AAGAACAC
15859336 A
1 A
15859337 CAAAGCCTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
35 20 0.30
36 12 0.18
37 9 0.14
38 25 0.38
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.22
Consensus pattern (36 bp):
ATCTTAAACCCAAATTGCAACAAAATGTAAGAACAC
Found at i:15859548 original size:16 final size:16
Alignment explanation
Indices: 15859527--15859561 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15859517 ATGTAGACGT
15859527 GAAAGAGAT-GGAAAAC
1 GAAAGAGATAGG-AAAC
15859543 GAAAGAGATAGGAAAC
1 GAAAGAGATAGGAAAC
15859559 GAA
1 GAA
15859562 GAAGTGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.57, C:0.06, G:0.31, T:0.06
Consensus pattern (16 bp):
GAAAGAGATAGGAAAC
Found at i:15859675 original size:51 final size:48
Alignment explanation
Indices: 15859620--15859717 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 48
15859610 AATAGATGTT
*
15859620 AGAGAAAATGAAAGA-AAAAGAGACTGGAATGAAAAATGTTGAAGACGATGC
1 AGAGAAAATGAAAGAGAAAAGAG-CAGG---GAAAAATGTTGAAGACGATGC
*
15859671 AGAGAAAATGAAAGAGAAAATAGCAGGGAAAAATGTTGAAGACGATG
1 AGAGAAAATGAAAGAGAAAAGAGCAGGGAAAAATGTTGAAGACGATG
15859718 GTGAATAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
48 20 0.45
51 18 0.41
52 6 0.14
ACGTcount: A:0.53, C:0.05, G:0.29, T:0.13
Consensus pattern (48 bp):
AGAGAAAATGAAAGAGAAAAGAGCAGGGAAAAATGTTGAAGACGATGC
Found at i:15859677 original size:24 final size:24
Alignment explanation
Indices: 15859650--15859717 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 24
15859640 AGACTGGAAT
15859650 GAAAAATGTTGAAGACGATGCAGA
1 GAAAAATGTTGAAGACGATGCAGA
** ** *
15859674 G-AAAATG-AAAGAGAAAATAGCAGG
1 GAAAAATGTTGA-AGACGAT-GCAGA
15859698 GAAAAATGTTGAAGACGATG
1 GAAAAATGTTGAAGACGATG
15859718 GTGAATAAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 8
0.65 0.19 0.17
Matches are distributed among these distances:
22 1 0.03
23 11 0.35
24 7 0.23
25 11 0.35
26 1 0.03
ACGTcount: A:0.50, C:0.06, G:0.29, T:0.15
Consensus pattern (24 bp):
GAAAAATGTTGAAGACGATGCAGA
Found at i:15876334 original size:12 final size:12
Alignment explanation
Indices: 15876318--15876378 Score: 68
Period size: 12 Copynumber: 4.8 Consensus size: 12
15876308 AAAATATTTC
*
15876318 AAAAAAAAAGAGG
1 AAAAAGAAA-AGG
15876331 AAAAAGAAAAGG
1 AAAAAGAAAAGG
*
15876343 AAAAAGGAAAAAAG
1 AAAAA-G-AAAAGG
*
15876357 AAAAAGAAAAAG
1 AAAAAGAAAAGG
15876369 AAAAAGAAAA
1 AAAAAGAAAA
15876379 AGTAAAAGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
12 24 0.55
13 10 0.23
14 10 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGG
Found at i:15876349 original size:7 final size:6
Alignment explanation
Indices: 15876330--15876386 Score: 78
Period size: 6 Copynumber: 9.2 Consensus size: 6
15876320 AAAAAAAGAG
*
15876330 GAAAAA GAAAAG GAAAAA GGAAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA -G-AAAAA GAAAAA GAAAAA GAAAAA GAAAAA
*
15876380 GTAAAA G
1 GAAAAA G
15876387 GAGAGGCCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
6 39 0.85
7 2 0.04
8 5 0.11
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (6 bp):
GAAAAA
Found at i:15877857 original size:44 final size:44
Alignment explanation
Indices: 15877805--15878635 Score: 255
Period size: 44 Copynumber: 19.2 Consensus size: 44
15877795 GATAGTGGGA
*
15877805 AGCAGATTAAAGTCGACAATCCTATCTCCCTAAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * *
15877849 AGCGGATTAAAATC-ACAGATCTTATC-CCTCTGAAGTTGCAG-AG
1 AGCAGATTAAAGTCGACA-ATCTTATCTCC-CTAAAGTTGCAGTGG
*** * * * *
15877892 AGCAGATCGCA-TC--TAGTCTTATCTCCCTGAAGTTACAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * *
15877933 AGCAGACT-AAGT-AAGCAAGTCTTATC-CTTCTAAAGTTACAGT-G
1 AGCAGATTAAAGTCGA-CAA-TCTTATCTC-CCTAAAGTTGCAGTGG
* * * *
15877976 AGGCAGACTGAAGAT-GGCAAATCTTATCTTCCTAAAGTTGCAGTGG
1 A-GCAGATTAAAG-TCGAC-AATCTTATCTCCCTAAAGTTGCAGTGG
* * *
15878022 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * * * * *
15878066 AGCGGATTAAAAT-TACAAATCTTATCTCTCTGAAGTTACAG-AG
1 AGCAGATTAAAGTCGAC-AATCTTATCTCCCTAAAGTTGCAGTGG
*** * * * *
15878109 AGCAGATCGCA-TC--TAGTCTTATCTCCCTTAAGTTGCGGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * *
15878150 A-CAAGACT-AAGT-AAGCAAGTCTTATC-CTCCTGAAGTTACAGT-G
1 AGC-AGATTAAAGTCGA-CAA-TCTTATCTC-CCTAAAGTTGCAGTGG
* * * * * *
15878193 AGGCAGACTGAAGAT-GGCAAATCTTATCTTCCTGAAGTTACAGTGG
1 A-GCAGATTAAAG-TCGAC-AATCTTATCTCCCTAAAGTTGCAGTGG
* * *
15878239 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * * * * *
15878283 AGCGGATTAAAAT-TACAGATCTTACCTCTCTAAAGTTACAG-AG
1 AGCAGATTAAAGTCGACA-ATCTTATCTCCCTAAAGTTGCAGTGG
*** * * * * *
15878326 AGCAGATCGCA-TC--TAGTCTTATCTTCCTGAAGTTGCGGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * **
15878367 A-CAAGACT-AAGT-AAGCAAGTCTTATC-CTCCTGAAGTTATAGT-G
1 AGC-AGATTAAAGTCGA-CAA-TCTTATCTC-CCTAAAGTTGCAGTGG
* * * * *
15878410 AGGCAGACTGAAGAT-GGCAAATCTTATCTCCCTGAAGTTGCAGTAG
1 A-GCAGATTAAAG-TCGAC-AATCTTATCTCCCTAAAGTTGCAGTGG
* * * * * *
15878456 AACAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTAG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * * * *
15878500 AGCGGATTAAAATC-ACAGATCTTATCTCTCTGAAGTTGCAG-AG
1 AGCAGATTAAAGTCGACA-ATCTTATCTCCCTAAAGTTGCAGTGG
*** * * * * *
15878543 AGCAGATCGCA-TC--TAGTCTTATATCCCTGAAGTTGCAGTAG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
* * ** *
15878584 AGCAGACTAAGGAAG-CAAGTCTTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAA-TCTTATCTCCCTAAAGTTGCAGTGG
*
15878628 AGTAGATT
1 AGCAGATT
15878636 GAAGCACTAA
Statistics
Matches: 589, Mismatches: 140, Indels: 116
0.70 0.17 0.14
Matches are distributed among these distances:
40 78 0.13
41 33 0.06
42 6 0.01
43 57 0.10
44 295 0.50
45 104 0.18
46 16 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
AGCAGATTAAAGTCGACAATCTTATCTCCCTAAAGTTGCAGTGG
Found at i:15878188 original size:217 final size:217
Alignment explanation
Indices: 15877805--15878626 Score: 1335
Period size: 217 Copynumber: 3.8 Consensus size: 217
15877795 GATAGTGGGA
* *
15877805 AGCAGATTAAAGTCGACAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* * *
15877870 TTATCCCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAG
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* *
15877935 CAGACTAAGTAAGCAAGTCTTATCCTTCTAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
131 CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
*
15878000 TATCTTCCTAAAGTTGCAGTGG
196 TATCTTCCTGAAGTTGCAGTGG
* *
15878022 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAAATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* *
15878087 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTTAAGTTGCGGTGGA-
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
15878151 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATC
131 C-AGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATC
*
15878216 TTATCTTCCTGAAGTTACAGTGG
195 TTATCTTCCTGAAGTTGCAGTGG
*
15878239 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* * * *
15878304 TTACCTCTCTAAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTTCCTGAAGTTGCGGTGGA-
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
*
15878368 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTATAGTGAGGCAGACTGAAGATGGCAAATC
131 C-AGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATC
* *
15878433 TTATCTCCCTGAAGTTGCAGTAG
195 TTATCTTCCTGAAGTTGCAGTGG
* * *
15878456 AACAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* * *
15878521 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATATCCCTGAAGTTGCAGTAGAG
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* *
15878586 CAGACTAAGGAAGCAAGTCTTAT-CTCCCTGAAGTTGCAGTG
131 CAGACTAAGTAAGCAAGTCTTATCCT-CCTGAAGTTACAGTG
15878627 GAGTAGATTG
Statistics
Matches: 566, Mismatches: 36, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
216 3 0.01
217 562 0.99
218 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (217 bp):
AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
TATCTTCCTGAAGTTGCAGTGG
Found at i:15878659 original size:128 final size:128
Alignment explanation
Indices: 15878431--15878668 Score: 277
Period size: 128 Copynumber: 1.9 Consensus size: 128
15878421 AGATGGCAAA
* * **
15878431 TCTTATCTCCCTGAAGTTGCAGTAGAACAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCA
1 TCTTATATCCCTGAAGTTGCAGTAGAACAGACTAAAGAAGATAATCCTATCTCCCTGAAGTTGCA
* * * *
15878496 GTAGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAG
66 GTAGAGCAGATTAAAAGCACAGATCCTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAG
* * * *
15878559 TCTTATATCCCTGAAGTTGCAGTAGAGCAGACTAAGGAAGCA-AGTCTTATCTCCCTGAAGTTGC
1 TCTTATATCCCTGAAGTTGCAGTAGAACAGACTAAAGAAG-ATAATCCTATCTCCCTGAAGTTGC
* * *
15878623 AGTGGAGTAGATT-GAAGCACTA-ATTCCTATAC-CTCTGAAGATGCAG
65 AGTAGAGCAGATTAAAAGCAC-AGA-TCCTAT-CTCTCTGAAGATGCAG
15878669 TAGGAAGGAA
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
127 6 0.07
128 83 0.91
129 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (128 bp):
TCTTATATCCCTGAAGTTGCAGTAGAACAGACTAAAGAAGATAATCCTATCTCCCTGAAGTTGCA
GTAGAGCAGATTAAAAGCACAGATCCTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAG
Found at i:15878867 original size:19 final size:19
Alignment explanation
Indices: 15878843--15878955 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
15878833 AATTTTTGAG
15878843 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
15878862 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
15878881 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
15878902 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
15878921 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15878940 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
15878956 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15878888 original size:40 final size:40
Alignment explanation
Indices: 15878844--15878950 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
15878834 ATTTTTGAGG
*
15878844 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
**
15878884 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
15878924 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
15878951 TTAGAATATA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 23 0.36
40 41 0.64
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
Found at i:15880057 original size:98 final size:98
Alignment explanation
Indices: 15879928--15880120 Score: 341
Period size: 98 Copynumber: 2.0 Consensus size: 98
15879918 AAATAATAAT
* *
15879928 GGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAA
1 GGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAA
15879993 ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAA
66 ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAA
* *
15880026 GGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAA
1 GGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAA
*
15880091 ATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 ATCTTGGATAAGTGGATGTTCTTTTAAAGT
15880121 TTTATTGTAC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
GGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAA
ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAA
Found at i:15881094 original size:16 final size:17
Alignment explanation
Indices: 15881049--15881094 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
15881039 AGAGCGAAAA
15881049 AGAGAGAAAAGAAAGAGG
1 AGAGA-AAAAGAAAGAGG
*
15881067 A-AGGAGAAAGAAAG-GG
1 AGA-GAAAAAGAAAGAGG
15881083 AGAGAAAAAGAA
1 AGAGAAAAAGAA
15881095 GGAAATCCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
16 11 0.46
17 10 0.42
18 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (17 bp):
AGAGAAAAAGAAAGAGG
Found at i:15894705 original size:62 final size:63
Alignment explanation
Indices: 15894602--15894730 Score: 226
Period size: 62 Copynumber: 2.1 Consensus size: 63
15894592 TTTCTATAAT
15894602 GTATATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTT-TATATATAC
1 GTATATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTATATATATAC
*
15894664 GTATCATATACGTACTTTTT-AAAAAAATTATTATAAATATATATTTCATTTTTATATATATAC
1 GTAT-ATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTATATATATAC
15894727 GTAT
1 GTAT
15894731 TTTAATATAT
Statistics
Matches: 64, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
62 36 0.56
63 28 0.44
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (63 bp):
GTATATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTATATATATAC
Found at i:15894747 original size:22 final size:23
Alignment explanation
Indices: 15894721--15894764 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
15894711 ATTTTTATAT
*
15894721 ATATACGTATTTT-AATATATGC
1 ATATACATATTTTAAATATATGC
15894743 ATATACATATTTTCAAATATAT
1 ATATACATATTTT-AAATATAT
15894765 ACGTACTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (23 bp):
ATATACATATTTTAAATATATGC
Found at i:15894773 original size:92 final size:91
Alignment explanation
Indices: 15894669--15894857 Score: 344
Period size: 92 Copynumber: 2.1 Consensus size: 91
15894659 TATACGTATC
*
15894669 ATATACGTACTTTTT-AAAAAAATTATTATAAATATATATTTCATTTTTATATATATACGTATTT
1 ATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTT-TATATATACGTATTT
15894733 TAATATATGCATATACATATTTTCAAA
65 TAATATATGCATATACATATTTTCAAA
15894760 TATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTTATATATACGTATTT
1 -ATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTTATATATACGTATTT
15894825 TAATATATGCATATACATATTTTCAAA
65 TAATATATGCATATACATATTTTCAAA
15894852 ATATAC
1 ATATAC
15894858 TTATATATAT
Statistics
Matches: 95, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
91 6 0.06
92 57 0.60
93 32 0.34
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (91 bp):
ATATACGTACTTTTTAAAAAAAATTATTATAAATATATATTTCATATTTTATATATACGTATTTT
AATATATGCATATACATATTTTCAAA
Found at i:15894862 original size:23 final size:22
Alignment explanation
Indices: 15894813--15894909 Score: 63
Period size: 21 Copynumber: 4.5 Consensus size: 22
15894803 CATATTTTAT
* * *
15894813 ATATACGTATTTTAATATATGC
1 ATATACATATTTTAAAATATAC
15894835 ATATACATATTTTCAAAATATAC
1 ATATACATATTTT-AAAATATAC
* * ** ** *
15894858 TTATATATATCAT-ACTTATAT
1 ATATACATATTTTAAAATATAC
**
15894879 ATATACATATTTTGTAA-ATAC
1 ATATACATATTTTAAAATATAC
15894900 ATATACATAT
1 ATATACATAT
15894910 ATAATTCATA
Statistics
Matches: 55, Mismatches: 18, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
21 27 0.49
22 12 0.22
23 16 0.29
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.44
Consensus pattern (22 bp):
ATATACATATTTTAAAATATAC
Found at i:15894874 original size:15 final size:16
Alignment explanation
Indices: 15894854--15894887 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
15894844 TTTTCAAAAT
15894854 ATACTTATATATAT-C
1 ATACTTATATATATAC
15894869 ATACTTATATATATAC
1 ATACTTATATATATAC
15894885 ATA
1 ATA
15894888 TTTTGTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
ATACTTATATATATAC
Found at i:15902505 original size:72 final size:72
Alignment explanation
Indices: 15902417--15902557 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
15902407 ATGATCAAAG
* *
15902417 TTTTGAATCATGTAAGAAACA-TAAATCTATTCATGAGTTAACCTAAAATTTTAAACCGACATTC
1 TTTTGAATCATGTAAGAAA-ATTAAATCTATTCATAAGTTAACCTAAAATTCTAAACCGACATTC
15902481 GAGTGTAA
65 GAGTGTAA
* * * *
15902489 TTTTGAATCATGTAAGAAAATTAAATCTATTCATAAGTTAACTTAGAATTCTAAATCGGCATTCG
1 TTTTGAATCATGTAAGAAAATTAAATCTATTCATAAGTTAACCTAAAATTCTAAACCGACATTCG
15902554 AGTG
66 AGTG
15902558 AACATATAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
71 1 0.02
72 61 0.98
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (72 bp):
TTTTGAATCATGTAAGAAAATTAAATCTATTCATAAGTTAACCTAAAATTCTAAACCGACATTCG
AGTGTAA
Found at i:15915122 original size:52 final size:51
Alignment explanation
Indices: 15915062--15915164 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 51
15915052 TAAACCTATG
*
15915062 CTACTAACATTTATAAAATCTTAACTTTACCATTCCAGCTATGCTTTGTTT
1 CTACTAACATTTATAAAATCTTAACTTTACCATTCCAGCTAAGCTTTGTTT
*
15915113 NCTACTAACATTTATAAAATCTTAACTTTACCATTCCTGCTAAGCTTTGTTT
1 -CTACTAACATTTATAAAATCTTAACTTTACCATTCCAGCTAAGCTTTGTTT
15915165 TGATCATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.43
Consensus pattern (51 bp):
CTACTAACATTTATAAAATCTTAACTTTACCATTCCAGCTAAGCTTTGTTT
Found at i:15918587 original size:16 final size:16
Alignment explanation
Indices: 15918558--15918596 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
15918548 TCCTAATTCT
*
15918558 AAAAAA-AAATATTTA
1 AAAAAATAAAAATTTA
*
15918573 AAAAAATAAAAATTTT
1 AAAAAATAAAAATTTA
15918589 AAAAAATA
1 AAAAAATA
15918597 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAAATAAAAATTTA
Found at i:15918619 original size:29 final size:28
Alignment explanation
Indices: 15918561--15918620 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
15918551 TAATTCTAAA
**
15918561 AAAAAATATTTAAAAAAATAAAAATTTT
1 AAAAAATATTTAAAAAAATAAAAACATT
* **
15918589 AAAAAATATTTCAAAATTTCAAAAACATT
1 AAAAAATATTTAAAAAAAT-AAAAACATT
15918618 AAA
1 AAA
15918621 TGTAAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (28 bp):
AAAAAATATTTAAAAAAATAAAAACATT
Found at i:15921209 original size:29 final size:29
Alignment explanation
Indices: 15921141--15921210 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
15921131 GTGGTAGACC
* *
15921141 GTGTGGGTCACACGACCGTGTGGTAAGCT
1 GTGTGGGTCACACGACAGTGCGGTAAGCT
* * * * *
15921170 GTATAGATCACACGACAGTGCGGTAGGTT
1 GTGTGGGTCACACGACAGTGCGGTAAGCT
15921199 GTGTGGGTCACA
1 GTGTGGGTCACA
15921211 AGGTTGTTTG
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.36, T:0.24
Consensus pattern (29 bp):
GTGTGGGTCACACGACAGTGCGGTAAGCT
Found at i:15922576 original size:9 final size:9
Alignment explanation
Indices: 15922564--15922631 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
15922554 TTAATTTGGG
15922564 TAATTCAGT
1 TAATTCAGT
15922573 TAATTC-GAT
1 TAATTCAG-T
*
15922582 TAATT-AGGG
1 TAATTCA-GT
*
15922591 TAATTCGGT
1 TAATTCAGT
* *
15922600 TAATTCGGG
1 TAATTCAGT
15922609 TAATTCAGT
1 TAATTCAGT
*
15922618 TAATTCGGT
1 TAATTCAGT
15922627 TAATT
1 TAATT
15922632 TTTAACCAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
8 1 0.02
9 46 0.96
10 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (9 bp):
TAATTCAGT
Found at i:15922579 original size:27 final size:27
Alignment explanation
Indices: 15922547--15922631 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
15922537 GTAGTGATTC
* *
15922547 AATTCGGTTAATTTGGGTAATTCAGTT
1 AATTCGGTTAATTAGGGTAATTCGGTT
*
15922574 AATTCGATTAATTAGGGTAATTCGGTT
1 AATTCGGTTAATTAGGGTAATTCGGTT
* *
15922601 AATTCGGGTAATTCA-GTTAATTCGGTT
1 AATTCGGTTAATT-AGGGTAATTCGGTT
15922628 AATT
1 AATT
15922632 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AATTCGGTTAATTAGGGTAATTCGGTT
Found at i:15922624 original size:18 final size:18
Alignment explanation
Indices: 15922581--15922631 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
15922571 GTTAATTCGA
* *
15922581 TTAATTAGGGTAATTCGG
1 TTAATTCGGGTAATTCAG
15922599 TTAATTCGGGTAATTCAG
1 TTAATTCGGGTAATTCAG
*
15922617 TTAATTCGGTTAATT
1 TTAATTCGGGTAATT
15922632 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (18 bp):
TTAATTCGGGTAATTCAG
Found at i:15939122 original size:19 final size:19
Alignment explanation
Indices: 15939095--15939136 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
15939085 CAATTGTCCA
*
15939095 TGCAGTATCACTACATATT
1 TGCACTATCACTACATATT
15939114 TGCACTATCACTACATATT
1 TGCACTATCACTACATATT
15939133 TGCA
1 TGCA
15939137 TCTTTAGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36
Consensus pattern (19 bp):
TGCACTATCACTACATATT
Found at i:15953918 original size:30 final size:30
Alignment explanation
Indices: 15953879--15954008 Score: 152
Period size: 30 Copynumber: 4.3 Consensus size: 30
15953869 ATGGTTGTCA
* **
15953879 CCATACCTTTTCATAATTTTATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
* * * *
15953909 CTATCCCTTTTCATAATTCAATAGCTGAAC
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
* * * *
15953939 CCATCACTTTTCATAATTTGATAGCTGAAA
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
15953969 CCATCCCTTTTCATAATTCGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
*
15953999 CTATCCCTTT
1 CCATCCCTTT
15954009 CCATTGGTCG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 84 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCGATAGCCGAAG
Found at i:15955144 original size:29 final size:31
Alignment explanation
Indices: 15955069--15955145 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
15955059 GAGTTTAAAG
*
15955069 TATCAGGTACTGTGTACCAATGATTACATTA
1 TATCAGGTACTATGTACCAATGATTACATTA
* *
15955100 TATCAAGTACTATGTACCGATGACTTA-A-T-
1 TATCAGGTACTATGTACCAATGA-TTACATTA
*
15955129 TATCAGGTACTTTGTAC
1 TATCAGGTACTATGTAC
15955146 TGGTGTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 15 0.38
30 1 0.03
31 21 0.52
32 3 0.08
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (31 bp):
TATCAGGTACTATGTACCAATGATTACATTA
Found at i:15961907 original size:31 final size:30
Alignment explanation
Indices: 15961793--15961907 Score: 99
Period size: 31 Copynumber: 3.8 Consensus size: 30
15961783 GGGTTTAAAG
* **
15961793 TATCAGGTATTATAG-ACCGGTGACTATA-T
1 TATCAGGTACTAT-GTACCGGTGTTTATATT
* *
15961822 TATCAGGTACTTTGTACCGGTGTGTATATT
1 TATCAGGTACTATGTACCGGTGTTTATATT
* ** *
15961852 GTATCAGGCACTATGTGTCGGTGTTTTTATCT
1 -TATCAGGTACTATGTACCGGTGTTTATAT-T
*
15961884 TATCAGGTACTATGTACCAGTGTT
1 TATCAGGTACTATGTACCGGTGTT
15961908 GGATACCTTA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
28 1 0.01
29 22 0.32
30 1 0.01
31 43 0.63
32 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (30 bp):
TATCAGGTACTATGTACCGGTGTTTATATT
Found at i:15964033 original size:22 final size:21
Alignment explanation
Indices: 15963994--15964034 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
15963984 TAGAAGAGAA
*
15963994 GCAAAAAGAGGTGATGTTCTT
1 GCAAAAAGAGGTAATGTTCTT
15964015 GCAAAAAGAGGTAAGTGTTC
1 GCAAAAAGAGGTAA-TGTTC
15964035 GTTTTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (21 bp):
GCAAAAAGAGGTAATGTTCTT
Found at i:15967213 original size:9 final size:9
Alignment explanation
Indices: 15967199--15967235 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
15967189 TATAGTTTGA
15967199 TATTCGAAT
1 TATTCGAAT
15967208 TATTCGAAT
1 TATTCGAAT
*
15967217 TATTCGAGT
1 TATTCGAAT
15967226 TATTCGAAT
1 TATTCGAAT
15967235 T
1 T
15967236 CGAAAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:15968152 original size:19 final size:19
Alignment explanation
Indices: 15968128--15968165 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15968118 GCCACTGCCA
*
15968128 CCCACCGTAATCAAATTTG
1 CCCACCATAATCAAATTTG
15968147 CCCACCATAATCAAATTTG
1 CCCACCATAATCAAATTTG
15968166 TTATTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.32, G:0.08, T:0.26
Consensus pattern (19 bp):
CCCACCATAATCAAATTTG
Found at i:15968581 original size:27 final size:26
Alignment explanation
Indices: 15968518--15968582 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 26
15968508 ATTTGAAAAA
15968518 AAAAGTTTTTGGGGTTTGGGAGAAAGT
1 AAAAG-TTTTGGGGTTTGGGAGAAAGT
*
15968545 AAAAGTTTTGCGGGATTTGGG-GGAAGT
1 AAAAGTTTTG-GGG-TTTGGGAGAAAGT
15968572 AAAAGTTTTGG
1 AAAAGTTTTGG
15968583 AGAGAAAGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
26 6 0.17
27 23 0.66
28 6 0.17
ACGTcount: A:0.29, C:0.02, G:0.37, T:0.32
Consensus pattern (26 bp):
AAAAGTTTTGGGGTTTGGGAGAAAGT
Found at i:15968619 original size:55 final size:54
Alignment explanation
Indices: 15968545--15968702 Score: 175
Period size: 51 Copynumber: 2.9 Consensus size: 54
15968535 GGGAGAAAGT
*
15968545 AAAAGTTTTGCGGGATTTGGGGGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGAATA
1 AAAAGTTTTGAGGG-TTTGGGGGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGAA-A
*
15968601 AAAAGTTTT-AGGGGTTTGGAGGAAGTAAAAGTTTT-GAGAGGAAAGT--AA-AAA
1 AAAAGTTTTGA-GGGTTTGGGGGAAGTAAAAGTTTTGGAGA-GAAAGTAAAAGAAA
* ** *
15968652 AAAAGTTTTGAGGGTTTGGGGGGAGTACAATTTTTTGG-GGGAAAGTAAAAG
1 AAAAGTTTTGAGGGTTTGGGGGAAGTA-AAAGTTTTGGAGAGAAAGTAAAAG
15968703 GGCTTGAGGG
Statistics
Matches: 87, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
51 30 0.34
52 10 0.11
53 5 0.06
54 4 0.05
55 26 0.30
56 12 0.14
ACGTcount: A:0.39, C:0.01, G:0.34, T:0.27
Consensus pattern (54 bp):
AAAAGTTTTGAGGGTTTGGGGGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGAAA
Found at i:15974226 original size:1 final size:1
Alignment explanation
Indices: 15974222--15974250 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
15974212 GTGTATGTTC
15974222 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15974251 GGTTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:15974748 original size:2 final size:2
Alignment explanation
Indices: 15974736--15974770 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
15974726 ATAGTATGTA
*
15974736 TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
15974771 AGAGAGAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.03, G:0.49, T:0.49
Consensus pattern (2 bp):
TG
Found at i:15976037 original size:21 final size:20
Alignment explanation
Indices: 15976011--15976049 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
15976001 AACAACTCAA
*
15976011 TTTTAATAGCTTTCTAAAAAC
1 TTTTAATAACTTT-TAAAAAC
15976032 TTTTAATAACTTTTAAAA
1 TTTTAATAACTTTTAAAA
15976050 GATTAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (20 bp):
TTTTAATAACTTTTAAAAAC
Found at i:15978661 original size:88 final size:87
Alignment explanation
Indices: 15978508--15978704 Score: 219
Period size: 89 Copynumber: 2.3 Consensus size: 87
15978498 CAAGTTTTTG
* * * *
15978508 TTAAAAAAAGCAATTAA-T--CTCTTTTTTTGCACTCATTTAGATATTTAAACTTTTAAAATGTA
1 TTAAAAAAAGCAATTAAGTCCCTCTTTTTTTGCACTCATTGAGATACTTAAACTTTCAAAATGCA
* *
15978570 TC-AAAAAGGCTCTCAATCCTTT
66 TCAAAAAAGACTCTCAA-ACTTT
*
15978592 TTAAAAAAAGCAATTAAGTCCCTACTTTTTTTTGCACTCAATTGAG-TACTT-ACCTTTCAAAAT
1 TTAAAAAAAGCAATTAAGTCCCT-C-TTTTTTTGCACTC-ATTGAGATACTTAAACTTTCAAAAT
15978655 GCATCAAAAAAGACTCTCAAACTTT
63 GCATCAAAAAAGACTCTCAAACTTT
15978680 TTCAAAAAAAAAGCAATTAAG-CCCT
1 TT---AAAAAAAGCAATTAAGTCCCT
15978705 TGCTTTTATT
Statistics
Matches: 96, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
84 17 0.18
85 1 0.01
87 2 0.02
88 21 0.22
89 30 0.31
90 9 0.09
91 16 0.17
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (87 bp):
TTAAAAAAAGCAATTAAGTCCCTCTTTTTTTGCACTCATTGAGATACTTAAACTTTCAAAATGCA
TCAAAAAAGACTCTCAAACTTT
Done.