Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 51 of 182
Found at i:15978818 original size:10 final size:10
Alignment explanation
Indices: 15978781--15978906 Score: 106
Period size: 10 Copynumber: 13.2 Consensus size: 10
15978771 TAAAAAATTC
15978781 AAATAT-TAA
1 AAATATATAA
* *
15978790 AAATTTATTA
1 AAATATATAA
* *
15978800 AATTTTATAA
1 AAATATATAA
15978810 AAATATATAA
1 AAATATATAA
15978820 AAATCATA-AA
1 AAAT-ATATAA
15978830 AAATATA-AA
1 AAATATATAA
15978839 AAAT-TATAA
1 AAATATATAA
* *
15978848 AATTTTATAA
1 AAATATATAA
15978858 AAATAGTA-AA
1 AAATA-TATAA
15978868 AAAT-TAT-A
1 AAATATATAA
*
15978876 AAATATATAG
1 AAATATATAA
*
15978886 AAATATAAAA
1 AAATATATAA
15978896 AAAT-TATAA
1 AAATATATAA
15978905 AA
1 AA
15978907 TTTTATAAAG
Statistics
Matches: 96, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
8 9 0.09
9 28 0.29
10 54 0.56
11 5 0.05
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (10 bp):
AAATATATAA
Found at i:15978840 original size:19 final size:18
Alignment explanation
Indices: 15978808--15978897 Score: 76
Period size: 19 Copynumber: 4.8 Consensus size: 18
15978798 TAAATTTTAT
15978808 AAAAATATATAAAAATCATA
1 AAAAATATA-AAAAAT-ATA
15978828 AAAAATATAAAAAAT-TA
1 AAAAATATAAAAAATATA
* *
15978845 TAAAATTTTATAAAAATAGTA
1 -AAAAATATA-AAAAATA-TA
*
15978866 AAAAAT-TATAAAATATA
1 AAAAATATAAAAAATATA
*
15978883 TAGAAATATAAAAAA
1 -AAAAATATAAAAAA
15978898 ATTATAAAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
17 4 0.07
18 18 0.31
19 20 0.34
20 14 0.24
21 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAAATATAAAAAATATA
Found at i:15978853 original size:48 final size:48
Alignment explanation
Indices: 15978781--15978884 Score: 147
Period size: 48 Copynumber: 2.1 Consensus size: 48
15978771 TAAAAAATTC
* *
15978781 AAATATTAAAAATTTATTAAATTTTATAAAAATA-TATAAAAATCATAAA
1 AAATA-TAAAAAATTATAAAATTTTATAAAAATAGTA-AAAAATCATAAA
*
15978830 AAATATAAAAAATTATAAAATTTTATAAAAATAGTAAAAAATTATAAA
1 AAATATAAAAAATTATAAAATTTTATAAAAATAGTAAAAAATCATAAA
*
15978878 ATATATA
1 AAATATA
15978885 GAAATATAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
48 43 0.86
49 7 0.14
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (48 bp):
AAATATAAAAAATTATAAAATTTTATAAAAATAGTAAAAAATCATAAA
Found at i:15978857 original size:38 final size:39
Alignment explanation
Indices: 15978781--15978899 Score: 118
Period size: 38 Copynumber: 3.1 Consensus size: 39
15978771 TAAAAAATTC
* * * **
15978781 AAATATTAAAAATTTATTAAATTTTATAAAAATATATAA
1 AAATAGTAAAAAATTATAAAAAATTATAAAAATATATAA
* *
15978820 AAATCA-TAAAAAA-TATAAAAAATTATAAAATTTTATAA
1 AAAT-AGTAAAAAATTATAAAAAATTATAAAAATATATAA
* * *
15978858 AAATAGTAAAAAATTATAAAATA-TATAGAAATATAAAA
1 AAATAGTAAAAAATTATAAAAAATTATAAAAATATATAA
15978896 AAAT
1 AAAT
15978900 TATAAAATTT
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.02
38 46 0.70
39 18 0.27
40 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (39 bp):
AAATAGTAAAAAATTATAAAAAATTATAAAAATATATAA
Found at i:15978876 original size:57 final size:55
Alignment explanation
Indices: 15978770--15978953 Score: 171
Period size: 57 Copynumber: 3.3 Consensus size: 55
15978760 TTAAATTTTA
* * * **
15978770 ATAAAAAAT-TCAAATATTA-AAAA-TTTATTAAATTTTATAAAAATATATAAAAAT
1 ATAAAAAATATAAAAAATTATAAAATTTTATAAAATCATA-AAAAAT-TATAAAAAT
15978824 CATAAAAAATATAAAAAATTATAAAATTTTATAAAAAT-AGTAAAAAATTAT-AAAAT
1 -ATAAAAAATATAAAAAATTATAAAATTTTAT-AAAATCA-TAAAAAATTATAAAAAT
* *
15978880 ATATAGAAATATAAAAAAATTATAAAATTTTATAAAGTCATAAGAAAATTATACAAAAT
1 ATA-AAAAATAT-AAAAAATTATAAAATTTTATAAAATCATAA-AAAATTATA-AAAAT
*
15978939 GTAAAGAAATATAAA
1 ATAAA-AAATATAAA
15978954 TTTCGTAAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
55 12 0.11
56 27 0.25
57 36 0.33
58 15 0.14
59 19 0.17
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (55 bp):
ATAAAAAATATAAAAAATTATAAAATTTTATAAAATCATAAAAAATTATAAAAAT
Found at i:15978906 original size:38 final size:37
Alignment explanation
Indices: 15978805--15978915 Score: 111
Period size: 38 Copynumber: 3.0 Consensus size: 37
15978795 TATTAAATTT
*
15978805 TATA-AAAATATATAAAAATCATAAAAAA-TATAAAA
1 TATATAAAATATATAAAAATTATAAAAAATTATAAAA
* *
15978840 AATTATAAAATTTTATAAAAA-TAGTAAAAAATTATAAAA
1 TA-TATAAAA-TATATAAAAATTA-TAAAAAATTATAAAA
* **
15978879 TATATAGAAATATAAAAAAATTATAAAATTTTATAAA
1 TATATA-AAATATATAAAAATTATAAAAAATTATAAA
15978916 GTCATAAGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
35 1 0.02
36 2 0.03
37 5 0.08
38 40 0.66
39 13 0.21
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.32
Consensus pattern (37 bp):
TATATAAAATATATAAAAATTATAAAAAATTATAAAA
Found at i:15979578 original size:30 final size:30
Alignment explanation
Indices: 15979531--15979590 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
15979521 TTCCCGAGCC
15979531 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
15979561 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
15979591 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:15980063 original size:47 final size:48
Alignment explanation
Indices: 15980011--15980142 Score: 166
Period size: 47 Copynumber: 2.8 Consensus size: 48
15980001 ATGGTTGAAC
*
15980011 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AACAGG
* *
15980059 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAC-AGG
*
15980104 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15980143 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
43 2 0.03
44 5 0.07
45 2 0.03
46 2 0.03
47 57 0.80
48 2 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACAGG
Found at i:15981515 original size:43 final size:43
Alignment explanation
Indices: 15981454--15981543 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
15981444 GCATTACAGA
* * *
15981454 TTTTCCCGCAAATGCCGCTAAAGACCATGACCTTTAGCGGCGC
1 TTTTCCCGCAAACGCCGCTAAAAACCATGACCTTTAGCGGCAC
*
15981497 TTTTCCCGCAAACGCCGCTAAAAATCATGACCTTTAGCGGCAC
1 TTTTCCCGCAAACGCCGCTAAAAACCATGACCTTTAGCGGCAC
15981540 TTTT
1 TTTT
15981544 TTTTGAAAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (43 bp):
TTTTCCCGCAAACGCCGCTAAAAACCATGACCTTTAGCGGCAC
Found at i:15981814 original size:24 final size:24
Alignment explanation
Indices: 15981771--15981817 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
15981761 ATAATAGAAG
15981771 CTACAAAACTAGTAATAATTAACA
1 CTACAAAACTAGTAATAATTAACA
*
15981795 CTACAAAACTCGTAATAATTAAC
1 CTACAAAACTAGTAATAATTAAC
15981818 CATCATGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.26
Consensus pattern (24 bp):
CTACAAAACTAGTAATAATTAACA
Found at i:15983598 original size:3 final size:3
Alignment explanation
Indices: 15983590--15983621 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15983580 GCTTTAACAT
15983590 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
15983622 TGTTACCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:15986205 original size:47 final size:47
Alignment explanation
Indices: 15986145--15986925 Score: 1562
Period size: 47 Copynumber: 16.6 Consensus size: 47
15986135 GATGCGAATG
15986145 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986239 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986333 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986380 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986427 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986474 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986521 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986568 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986662 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986709 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986756 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986850 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15986897 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15986926 ACTTATGGAT
Statistics
Matches: 734, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 734 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:15994492 original size:47 final size:47
Alignment explanation
Indices: 15994432--15994554 Score: 246
Period size: 47 Copynumber: 2.6 Consensus size: 47
15994422 GATGCGAATG
15994432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15994479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15994526 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15994555 ACTTATGGAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:15997976 original size:7 final size:7
Alignment explanation
Indices: 15997960--15998113 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
15997950 TATAGAATAT
15997960 AACCCATA
1 AACCC-TA
15997968 AACCCTA
1 AACCCTA
15997975 AACCTCTA
1 AACC-CTA
15997983 AACCCCT-
1 AA-CCCTA
*
15997990 AACCTTA
1 AACCCTA
*
15997997 AACCC-C
1 AACCCTA
15998003 AACCCTTA
1 AACCC-TA
*
15998011 AACCATA
1 AACCCTA
* *
15998018 AATCATA
1 AACCCTA
*
15998025 AACACTA
1 AACCCTA
15998032 AACCC-A
1 AACCCTA
15998038 TAACCCATA
1 -AACCC-TA
*
15998047 AACCTTA
1 AACCCTA
*
15998054 AA--ATA
1 AACCCTA
*
15998059 GTAACTCTTA
1 --AAC-CCTA
* *
15998069 AATCTTA
1 AACCCTA
*
15998076 AACCTTA
1 AACCCTA
15998083 AACCCTA
1 AACCCTA
*
15998090 AACCATA
1 AACCCTA
* *
15998097 TACACTA
1 AACCCTA
15998104 AACCCTA
1 AACCCTA
15998111 AAC
1 AAC
15998114 TATAATGATA
Statistics
Matches: 111, Mismatches: 22, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
5 2 0.02
6 9 0.08
7 73 0.66
8 22 0.20
9 3 0.03
10 2 0.02
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:15998036 original size:72 final size:73
Alignment explanation
Indices: 15997960--15998113 Score: 172
Period size: 72 Copynumber: 2.2 Consensus size: 73
15997950 TATAGAATAT
* * * *
15997960 AACCCATAAACCC-TAAACCTCTAAACCCCTAAC-CTTAAACCCCAACCCTTAAACCATAAATCA
1 AACCCATAAACCCATAAACCT-TAAAACACTAACTCTTAAACCCCAAACCTTAAACCATAAACCA
15998023 TAAACACTA
65 TAAACACTA
* * * ** *
15998032 AACCCAT-AACCCATAAACCTTAAAATAGTAACTCTTAAATCTTAAACCTTAAACCCTAAACCAT
1 AACCCATAAACCCATAAACCTTAAAACACTAACTCTTAAACCCCAAACCTTAAACCATAAACCAT
*
15998096 ATACACTA
66 AAACACTA
15998104 AACCC-TAAAC
1 AACCCATAAAC
15998114 TATAATGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
71 14 0.21
72 54 0.79
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (73 bp):
AACCCATAAACCCATAAACCTTAAAACACTAACTCTTAAACCCCAAACCTTAAACCATAAACCAT
AAACACTA
Found at i:15998055 original size:22 final size:21
Alignment explanation
Indices: 15998006--15998055 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
15997996 AAACCCCAAC
*
15998006 CCTTAAACCATAAATCATAAA
1 CCTTAAACCATAAACCATAAA
*
15998027 CAC-TAAACCCATAACCCATAAA
1 C-CTTAAA-CCATAAACCATAAA
15998049 CCTTAAA
1 CCTTAAA
15998056 ATAGTAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:15998091 original size:14 final size:14
Alignment explanation
Indices: 15997966--15998113 Score: 79
Period size: 14 Copynumber: 10.4 Consensus size: 14
15997956 ATATAACCCA
15997966 TAAACCCTAAACCT
1 TAAACCCTAAACCT
15997980 CTAAACCCCT-AACCT
1 -TAAA-CCCTAAACCT
* *
15997995 TAAACCCCAACCCT
1 TAAACCCTAAACCT
* * *
15998009 TAAACCATAAATCA
1 TAAACCCTAAACCT
*
15998023 TAAACACTAAACC-
1 TAAACCCTAAACCT
*
15998036 CATAACCCATAAACCT
1 TA-AACCC-TAAACCT
*
15998052 TAAA--ATAGTAACTCT
1 TAAACCCTA--AAC-CT
* *
15998067 TAAATCTTAAACCT
1 TAAACCCTAAACCT
*
15998081 TAAACCCTAAACCA
1 TAAACCCTAAACCT
* * *
15998095 TATACACTAAACCC
1 TAAACCCTAAACCT
15998109 TAAAC
1 TAAAC
15998114 TATAATGATA
Statistics
Matches: 101, Mismatches: 22, Indels: 21
0.70 0.15 0.15
Matches are distributed among these distances:
12 2 0.02
13 4 0.04
14 62 0.61
15 26 0.26
16 5 0.05
17 2 0.02
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:15998327 original size:41 final size:41
Alignment explanation
Indices: 15998270--15998582 Score: 493
Period size: 41 Copynumber: 7.6 Consensus size: 41
15998260 TATATTTTTT
* *
15998270 GCGGCGTTTTT-CAAAAGCGCCGCTAAAAGCTCGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
* *
15998310 GCGGCGCTTCTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
15998351 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
15998392 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
15998433 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
* *
15998474 GCGGCGTTTTTCCAGAAGTGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
* * * *
15998515 GTGGCGTTTTTCCAGAAGCGCCTCTAAAACCTCGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
** *
15998556 GCGGCGTTTGGACCAAAAACGCCGCTA
1 GCGGCGTTT-TTCCAAAAGCGCCGCTA
15998583 TTGCTCAGTT
Statistics
Matches: 253, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
40 9 0.04
41 232 0.92
42 12 0.05
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
Found at i:15998599 original size:41 final size:41
Alignment explanation
Indices: 15998554--15998646 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
15998544 CCTCGATCTA
*
15998554 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
*
15998595 TAGCGGCGTTTGGACCAAAAACGTCGCTATTGCTCAATTTT
1 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
*
15998636 TTGCGGCGTTT
1 TAGCGGCGTTT
15998647 TATTGCAAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (41 bp):
TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAATTTT
Found at i:16000087 original size:30 final size:30
Alignment explanation
Indices: 16000053--16000119 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
16000043 CTATCTATTT
16000053 TTAATTTATGCTATTGTACTATTATATTAA
1 TTAATTTATGCTATTGTACTATTATATTAA
16000083 TTAATTTATGCTATTGTACTATTATATTAA
1 TTAATTTATGCTATTGTACTATTATATTAA
16000113 TTAATTT
1 TTAATTT
16000120 TTAATTTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (30 bp):
TTAATTTATGCTATTGTACTATTATATTAA
Found at i:16006980 original size:49 final size:50
Alignment explanation
Indices: 16006903--16007081 Score: 159
Period size: 50 Copynumber: 3.6 Consensus size: 50
16006893 AAGTGTTTAG
* * *
16006903 TATTTAATTATGACATGTATT-TCATAACTCAT-ATGTTAATAAAG-TT-CA
1 TATTTAATTATGACATGCATTAT-GTAACTC-TCATGATAATAAAGTTTGCA
* * *
16006951 TGATTTAATTATGCCATGCATTATGTAACTCTCATGATAGTTAAGTTTGCA
1 T-ATTTAATTATGACATGCATTATGTAACTCTCATGATAATAAAGTTTGCA
* * * * *
16007002 TATTAAATGATGACATGCATTATGTAACTCCCATGATAATTAAGTGTGCA
1 TATTTAATTATGACATGCATTATGTAACTCTCATGATAATAAAGTTTGCA
* * * * *
16007052 TCTTTAATTAAGTCTTGCATTAAGTAACTC
1 TATTTAATTATGACATGCATTATGTAACTC
16007082 ATTTGTTCAT
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.02
49 33 0.31
50 69 0.64
51 3 0.03
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (50 bp):
TATTTAATTATGACATGCATTATGTAACTCTCATGATAATAAAGTTTGCA
Found at i:16010599 original size:12 final size:13
Alignment explanation
Indices: 16010557--16010593 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
16010547 TCATTTTGTA
16010557 AAAGTTTAGGGGC
1 AAAGTTTAGGGGC
16010570 AAAGTTTAGGGGC
1 AAAGTTTAGGGGC
16010583 AAAGTTTAGGG
1 AAAGTTTAGGG
16010594 CCAAGTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.38, T:0.24
Consensus pattern (13 bp):
AAAGTTTAGGGGC
Found at i:16011034 original size:47 final size:44
Alignment explanation
Indices: 16010924--16011093 Score: 137
Period size: 46 Copynumber: 3.7 Consensus size: 44
16010914 TCATGTGTGC
* *
16010924 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGG-C-CATTACGAGA
* * *
16010970 GCCATTGTAAGACCATGTTTGGGACATGGCATTGG-CATTGAAACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCATT---ACGAGA
* **
16011018 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCC-TCGCGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCATTACGA-G--A
* * *
16011064 GCCAGCGTAAGACATGTCAGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
16011094 CGGCTACGAG
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 45 0.45
47 27 0.27
48 21 0.21
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCATTACGAGA
Found at i:16017002 original size:27 final size:27
Alignment explanation
Indices: 16016964--16017018 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
16016954 TATAATTCCA
16016964 AGTCGGTGATCGAGTGTTTTTAAAGGT
1 AGTCGGTGATCGAGTGTTTTTAAAGGT
16016991 AGTCGGTGATCGAGTGTTTTTAAAGGT
1 AGTCGGTGATCGAGTGTTTTTAAAGGT
16017018 A
1 A
16017019 TCCCCGTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36
Consensus pattern (27 bp):
AGTCGGTGATCGAGTGTTTTTAAAGGT
Found at i:16018832 original size:45 final size:44
Alignment explanation
Indices: 16018719--16018841 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
16018709 CATGTCTGGA
* *
16018719 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGACGT-AGCC
* * * *
16018765 AGCGTAAGACATGTCGGGGACATGCATCGGCTACGAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGTAGCC
*
16018809 AGTGTAATACAATGTCTGGGACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
16018842 ACGGAGAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.15
45 15 0.23
46 40 0.62
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGTAGCC
Found at i:16021880 original size:75 final size:75
Alignment explanation
Indices: 16021790--16021939 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
16021780 TTATGTGTTC
16021790 TTAATTCTTATCTTGATATTCCAGGATATTAATTCAAGTTAAGCTCTTATTCAGAGGAGGAATAG
1 TTAATTCTTATCTTGATATTCCAGGATATTAATTCAAGTTAAGCTCTTATTCAGAGGAGGAATAG
16021855 ACCCTATCTA
66 ACCCTATCTA
16021865 TTAATTCTTATCTTGATATTCCAGGATATTAATTCAAGTTAAGCTCTTATTCAGAGGAGGAATAG
1 TTAATTCTTATCTTGATATTCCAGGATATTAATTCAAGTTAAGCTCTTATTCAGAGGAGGAATAG
*
16021930 ACCCTGTCTA
66 ACCCTATCTA
16021940 AGAGTACATT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (75 bp):
TTAATTCTTATCTTGATATTCCAGGATATTAATTCAAGTTAAGCTCTTATTCAGAGGAGGAATAG
ACCCTATCTA
Found at i:16027754 original size:22 final size:23
Alignment explanation
Indices: 16027732--16027783 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
16027722 ATGTTTTTAC
16027732 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
16027755 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
16027777 TTTTATT
1 TTTTATT
16027784 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:16034195 original size:28 final size:28
Alignment explanation
Indices: 16034164--16034222 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
16034154 GTTAGATACT
*
16034164 TTAATAAAATTTTATCTAAATTTTA-TTA
1 TTAATAAAATTTTATC-AAATTTAATTTA
* *
16034192 TTAATTAAATTTTTTCAAATTTAATTTA
1 TTAATAAAATTTTATCAAATTTAATTTA
16034220 TTA
1 TTA
16034223 GATAGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (28 bp):
TTAATAAAATTTTATCAAATTTAATTTA
Found at i:16035501 original size:98 final size:96
Alignment explanation
Indices: 16035310--16035504 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 96
16035300 TGCTTGTTTT
* *
16035310 GTTGGCATATTTTGATTAGATTATTGTGACTATTTTTGTGCATTTTTAAGGGATATTATTCAATA
1 GTTGGCATATTTTGATTAGATTATTGTGACTATTTTTGTGCATTTTTAAAGGATATTATGCAATA
16035375 TATTTCATTATTTACATGAGGAAGATATTTA
66 TATTTCATTATTTACATGAGGAAGATATTTA
16035406 GTTGGCATATTTTGATTCA-ATTATTGTGACTATTTTTGTGCACTTTCTTAAAGGATATTATGCA
1 GTTGGCATATTTTGATT-AGATTATTGTGACTATTTTTGTGCA-TTT-TTAAAGGATATTATGCA
*
16035470 ATATATTTCA-TAGTTTACTTGAGGAAGATATTTA
63 ATATATTTCATTA-TTTACATGAGGAAGATATTTA
16035504 G
1 G
16035505 ATAAGTAAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
96 40 0.43
97 6 0.07
98 46 0.50
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.47
Consensus pattern (96 bp):
GTTGGCATATTTTGATTAGATTATTGTGACTATTTTTGTGCATTTTTAAAGGATATTATGCAATA
TATTTCATTATTTACATGAGGAAGATATTTA
Found at i:16037671 original size:1 final size:1
Alignment explanation
Indices: 16037665--16038426 Score: 1515
Period size: 1 Copynumber: 762.0 Consensus size: 1
16037655 AATTCCTTTC
*
16037665 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16037730 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16037795 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16037860 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16037925 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16037990 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038055 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038120 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038185 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038250 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038315 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038380 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16038427 GCTTTAAACA
Statistics
Matches: 759, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 759 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:16075364 original size:10 final size:11
Alignment explanation
Indices: 16075305--16075344 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
16075295 TAACTTCCAT
16075305 TTCAGCTCAA-
1 TTCAGCTCAAC
*
16075315 -TAAGCTCAAC
1 TTCAGCTCAAC
16075325 TT-AGCTCAAC
1 TTCAGCTCAAC
16075335 TTCAGCTCAA
1 TTCAGCTCAA
16075345 ACATTTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
9 8 0.31
10 10 0.38
11 8 0.31
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.28
Consensus pattern (11 bp):
TTCAGCTCAAC
Found at i:16076818 original size:15 final size:15
Alignment explanation
Indices: 16076798--16076849 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 15
16076788 TCTCTTTCAA
16076798 TTTCTTTTTTTGCTT
1 TTTCTTTTTTTGCTT
*
16076813 TTTC-TTTTTCGCTT
1 TTTCTTTTTTTGCTT
* *
16076827 TTTCTTTTCTT-CAT
1 TTTCTTTTTTTGCTT
16076841 TTTCTTTTT
1 TTTCTTTTT
16076850 CTCTCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 23 0.74
15 8 0.26
ACGTcount: A:0.02, C:0.17, G:0.04, T:0.77
Consensus pattern (15 bp):
TTTCTTTTTTTGCTT
Found at i:16076849 original size:6 final size:6
Alignment explanation
Indices: 16076804--16076918 Score: 79
Period size: 6 Copynumber: 18.5 Consensus size: 6
16076794 TCAATTTCTT
* * **
16076804 TTTTTGC TTTTTC TTTTTCGC TTTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC
1 TTTTT-C TTTTTC TTTTT--C TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC
** * ** *
16076857 TTTTTC GATTTC TTTTTC TTTTGC AATTTC TTTTTC TTTTTC GTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
16076905 TTTTT- GTTTTC TTT
1 TTTTTC TTTTTC TTT
16076919 CAACTTCTTT
Statistics
Matches: 81, Mismatches: 22, Indels: 11
0.71 0.19 0.10
Matches are distributed among these distances:
5 4 0.05
6 58 0.72
7 10 0.12
8 9 0.11
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.72
Consensus pattern (6 bp):
TTTTTC
Found at i:16076871 original size:12 final size:12
Alignment explanation
Indices: 16076856--16076977 Score: 51
Period size: 12 Copynumber: 10.6 Consensus size: 12
16076846 TTTTCTCTCA
16076856 CTTTTTCGATTT
1 CTTTTTCGATTT
*
16076868 CTTTTTC-TTTT
1 CTTTTTCGATTT
** **
16076879 GCAATTTCTTTTT
1 -CTTTTTCGATTT
*
16076892 CTTTTTCGTTTT
1 CTTTTTCGATTT
16076904 CTTTTT-G-TTT
1 CTTTTTCGATTT
* * *
16076914 -TCTTTCAACTT
1 CTTTTTCGATTT
* *
16076925 CTTTTTCAATCT
1 CTTTTTCGATTT
*
16076937 CTTTTTTCGTTTT
1 C-TTTTTCGATTT
16076950 CTTTTT-G-TTT
1 CTTTTTCGATTT
* *
16076960 -TCTTTCAATTT
1 CTTTTTCGATTT
16076971 CTTTTTC
1 CTTTTTC
16076978 AATCTCTTTC
Statistics
Matches: 83, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
9 8 0.10
10 6 0.07
11 10 0.12
12 46 0.55
13 13 0.16
ACGTcount: A:0.07, C:0.18, G:0.05, T:0.70
Consensus pattern (12 bp):
CTTTTTCGATTT
Found at i:16076913 original size:11 final size:12
Alignment explanation
Indices: 16076812--16076964 Score: 84
Period size: 12 Copynumber: 12.7 Consensus size: 12
16076802 TTTTTTTGCT
16076812 TTTTCTTTTTCG
1 TTTTCTTTTTCG
*
16076824 CTTTTTCTTTTCTTCA
1 --TTTTC-TTT-TTCG
16076840 TTTTCTTTTTC-
1 TTTTCTTTTTCG
**
16076851 TCTCACTTTTTCG
1 T-TTTCTTTTTCG
*
16076864 ATTTCTTTTTC-
1 TTTTCTTTTTCG
** *
16076875 TTTTGCAATTTCT
1 TTTT-CTTTTTCG
16076888 TTTTCTTTTTCG
1 TTTTCTTTTTCG
16076900 TTTTCTTTTT-G
1 TTTTCTTTTTCG
*
16076911 TTTTC--TTTCA
1 TTTTCTTTTTCG
** *
16076921 ACTTCTTTTTCA
1 TTTTCTTTTTCG
* *
16076933 ATCTCTTTTTTCG
1 TTTTC-TTTTTCG
16076946 TTTTCTTTTT-G
1 TTTTCTTTTTCG
16076957 TTTTCTTT
1 TTTTCTTT
16076965 CAATTTCTTT
Statistics
Matches: 109, Mismatches: 20, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
9 3 0.03
10 3 0.03
11 19 0.17
12 52 0.48
13 16 0.15
14 10 0.09
15 3 0.03
16 3 0.03
ACGTcount: A:0.06, C:0.19, G:0.05, T:0.71
Consensus pattern (12 bp):
TTTTCTTTTTCG
Found at i:16076946 original size:46 final size:46
Alignment explanation
Indices: 16076893--16076986 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
16076883 TTTCTTTTTC
16076893 TTTTTCGTTTTCTTTTTGTTTTCTTTCAACTTCTTTTTCAATCTCT
1 TTTTTCGTTTTCTTTTTGTTTTCTTTCAACTTCTTTTTCAATCTCT
*
16076939 TTTTTCGTTTTCTTTTTGTTTTCTTTCAATTTCTTTTTCAATCTCT
1 TTTTTCGTTTTCTTTTTGTTTTCTTTCAACTTCTTTTTCAATCTCT
16076985 TT
1 TT
16076987 CTCCTTTTCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.69
Consensus pattern (46 bp):
TTTTTCGTTTTCTTTTTGTTTTCTTTCAACTTCTTTTTCAATCTCT
Found at i:16078015 original size:28 final size:25
Alignment explanation
Indices: 16077984--16078060 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 25
16077974 CTTTTCACTT
16077984 TTTTTTTAACTTGATTTTTTTTGCTC-A
1 TTTTTTT-ACTT--TTTTTTTTGCTCGA
*
16078011 CTTTTTTTTCTTTCTTTTTTTTTGCTCGA
1 -TTTTTTTAC--T-TTTTTTTTTGCTCGA
16078040 TTTTTTTCACTTTTTTTTTTG
1 TTTTTTT-ACTTTTTTTTTTG
16078061 AATTTCGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
26 10 0.24
27 2 0.05
28 26 0.62
29 3 0.07
30 1 0.02
ACGTcount: A:0.08, C:0.13, G:0.06, T:0.73
Consensus pattern (25 bp):
TTTTTTTACTTTTTTTTTTGCTCGA
Found at i:16083589 original size:24 final size:24
Alignment explanation
Indices: 16083554--16083601 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
16083544 ACATTTTAGC
16083554 ACTCTTTTCCATCCCCAGACAGAT
1 ACTCTTTTCCATCCCCAGACAGAT
16083578 NACTC-TTTCCATCCCCAGACAGAT
1 -ACTCTTTTCCATCCCCAGACAGAT
16083602 GGTTAATCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.25, C:0.38, G:0.08, T:0.27
Consensus pattern (24 bp):
ACTCTTTTCCATCCCCAGACAGAT
Found at i:16085217 original size:49 final size:50
Alignment explanation
Indices: 16085114--16085226 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 50
16085104 AAGAAATTTC
** *
16085114 AGCACTATGTGTGCGAGGTTATGCGGCACTATGTGTGCAAAAACTACATG
1 AGCACTATGTGTGCGAGGAAACGCGGCACTATGTGTGCAAAAACTACATG
* ** *
16085164 -GCACTATGTGTGTGAGGAAACGCGGCACTATGTGTGCGAATGAGTA-A-G
1 AGCACTATGTGTGCGAGGAAACGCGGCACTATGTGTGC-AAAAACTACATG
16085212 AGCACTATGTGTGCG
1 AGCACTATGTGTGCG
16085227 GACCTTTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.02
49 47 0.89
50 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (50 bp):
AGCACTATGTGTGCGAGGAAACGCGGCACTATGTGTGCAAAAACTACATG
Found at i:16097444 original size:100 final size:101
Alignment explanation
Indices: 16097317--16097523 Score: 398
Period size: 100 Copynumber: 2.1 Consensus size: 101
16097307 TAAACTAAAA
*
16097317 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
1 TGAGCTAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
16097382 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAG
66 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAG
16097418 TGAGC-AAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
1 TGAGCTAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
16097482 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAG
66 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAG
16097518 TGAGCT
1 TGAGCT
16097524 CGGTTTAGCT
Statistics
Matches: 104, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
100 99 0.95
101 5 0.05
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.29
Consensus pattern (101 bp):
TGAGCTAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAG
Found at i:16097823 original size:228 final size:227
Alignment explanation
Indices: 16097418--16097856 Score: 860
Period size: 228 Copynumber: 1.9 Consensus size: 227
16097408 GAGCTAGGAG
16097418 TGAGCAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGCT
1 TGAGCAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGCT
16097483 AAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAGTGAGCTCGGTTTAGCTCAGACAAGATGGAT
66 AAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAGTGAGCTCGGTTTAGCTCAGACAAGATGGAT
16097548 TGAGCTCGAATAAGCTGGATTTGAGCTAGACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCAG
131 TGAGCTCGAATAAGCTGGATTTGAGCTAGACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCAG
16097613 CTTGCCAACATGTCCTCGAGTTTAAACTAAAA
196 CTTGCCAACATGTCCTCGAGTTTAAACTAAAA
*
16097645 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
1 TGAGC-AAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGC
16097710 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAGTGAGCTCGGTTTAGCTCAGACAAGATGGA
65 TAAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAGTGAGCTCGGTTTAGCTCAGACAAGATGGA
16097775 TTGAGCTCGAATAAGCTGGATTTGAGCTAGACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCA
130 TTGAGCTCGAATAAGCTGGATTTGAGCTAGACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCA
16097840 GCTTGCCAACATGTCCT
195 GCTTGCCAACATGTCCT
16097857 TGCTCGACTT
Statistics
Matches: 210, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
227 5 0.02
228 205 0.98
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (227 bp):
TGAGCAAACTTTAGCTTGTGAGCTAAAGTTGAACTGAGATTAAACTCCTAAGCTGAAGTTGAGCT
AAGGTTTAGCTCGTGAGTTGAAAGTGAGCTAGGAGTGAGCTCGGTTTAGCTCAGACAAGATGGAT
TGAGCTCGAATAAGCTGGATTTGAGCTAGACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCAG
CTTGCCAACATGTCCTCGAGTTTAAACTAAAA
Found at i:16099926 original size:30 final size:30
Alignment explanation
Indices: 16099855--16099937 Score: 80
Period size: 30 Copynumber: 2.7 Consensus size: 30
16099845 CTTTTGTTTC
* *
16099855 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
*
16099886 AATTTC-TTTTCGTTCTCTTTTTCAATCT-T
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
16099915 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
16099938 GCTTTTCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 5 0.11
30 31 0.70
31 8 0.18
ACGTcount: A:0.13, C:0.20, G:0.01, T:0.65
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:16100009 original size:5 final size:5
Alignment explanation
Indices: 16099999--16100055 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
16099989 TACTTGCCTC
*
16099999 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTT TGCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTTT T-CTTT
16100046 TCTTT TCTTT
1 TCTTT TCTTT
16100056 GTTTTCTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.56
6 15 0.33
7 1 0.02
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:16100065 original size:16 final size:16
Alignment explanation
Indices: 16099997--16100066 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
16099987 CTTACTTGCC
16099997 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTAT
*
16100013 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTAT
* **
16100029 TCT-TTTGCTTTTGCT
1 TCTCTTTTCTTTTTAT
*
16100044 TTTCTTTTCTTTGTT-T
1 TCTCTTTTCTTT-TTAT
16100060 TCTCTTT
1 TCTCTTT
16100067 ACAAGAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
15 14 0.33
16 27 0.63
17 2 0.05
ACGTcount: A:0.03, C:0.19, G:0.04, T:0.74
Consensus pattern (16 bp):
TCTCTTTTCTTTTTAT
Found at i:16102713 original size:30 final size:29
Alignment explanation
Indices: 16102679--16102775 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 29
16102669 TAAACTAAAA
*
16102679 TGAGCTAAACTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAA-TTTAGCTCGTGAGCTAAAGT
* * * * * *
16102709 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCT-AAATTTAGCTCGTGAGCTAAAGT
*
16102739 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAA-ATTTAGCTCGTGAGCTAAAGT
16102768 ATGAGCTA
1 -TGAGCTA
16102776 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 46 0.92
31 2 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (29 bp):
TGAGCTAAATTTAGCTCGTGAGCTAAAGT
Found at i:16102905 original size:46 final size:46
Alignment explanation
Indices: 16102838--16102928 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
16102828 ATTTGAGCTA
*
16102838 GACGGAGCTCGTGGAGCTGGAAACGAGCTGGGATCAGCTTGCCAAG
1 GACGGAGCTCGTGGAGCTGGAAACGAGATGGGATCAGCTTGCCAAG
*
16102884 GACGGAGCTCGTGGAGTTGGAAACGAGATGGGATCAGCTTGCCAA
1 GACGGAGCTCGTGGAGCTGGAAACGAGATGGGATCAGCTTGCCAA
16102929 CATGTCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.38, T:0.16
Consensus pattern (46 bp):
GACGGAGCTCGTGGAGCTGGAAACGAGATGGGATCAGCTTGCCAAG
Found at i:16107035 original size:24 final size:23
Alignment explanation
Indices: 16106981--16107058 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 23
16106971 GGATAATTAA
**
16106981 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
16107004 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
*
16107028 GAAATGGTA--TGGAATTGGTAT
1 GAAATGGTATTTGGAATTGGTAC
*
16107049 GAAATAGTAT
1 GAAATGGTAT
16107059 GGTATTTGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
21 18 0.42
22 1 0.02
23 9 0.21
24 15 0.35
ACGTcount: A:0.27, C:0.03, G:0.31, T:0.40
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:16107043 original size:21 final size:21
Alignment explanation
Indices: 16107017--16107083 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
16107007 TTGGTATTTG
16107017 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
16107038 GGAATTGGTATGAAATAGTAT
1 GGAATTGGTACGAAATGGTAT
* *
16107059 GGTATTTGGTACGAATTGGTTAT
1 GG-AATTGGTACGAAATGG-TAT
16107082 GG
1 GG
16107084 TTCAAAGAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 21 0.55
22 12 0.32
23 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.34
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:16111357 original size:17 final size:17
Alignment explanation
Indices: 16111332--16111387 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
16111322 TCTCTTTTCA
*
16111332 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
16111349 TTCTTTTTTTTT-ATCATTT
1 TTCTTTTTTTTTGA--A-TT
* *
16111368 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
16111385 TTC
1 TTC
16111388 GCTCTTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 1 0.03
17 16 0.50
18 2 0.06
19 13 0.41
ACGTcount: A:0.09, C:0.12, G:0.04, T:0.75
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:16113624 original size:12 final size:12
Alignment explanation
Indices: 16113603--16113636 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
16113593 TGCAATTTTT
16113603 TTTTTCTTTTCAA
1 TTTTT-TTTTCAA
16113616 TTTTTTTTTCAA
1 TTTTTTTTTCAA
16113628 TTTTTTTTT
1 TTTTTTTTT
16113637 TCGAACTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:16119579 original size:27 final size:25
Alignment explanation
Indices: 16119549--16119604 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 25
16119539 TTTTGTTCAA
*
16119549 TCTCAATCTCAATCTCGTTTTTCTTTT
1 TCTCAATCTCAATCTC-TTTTT-TTCT
* *
16119576 TCTCACTCTCACTCTCTTTTTTTCT
1 TCTCAATCTCAATCTCTTTTTTTCT
16119601 TCTC
1 TCTC
16119605 TTGAGTTCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 5 0.19
27 14 0.54
ACGTcount: A:0.11, C:0.32, G:0.02, T:0.55
Consensus pattern (25 bp):
TCTCAATCTCAATCTCTTTTTTTCT
Found at i:16125270 original size:52 final size:52
Alignment explanation
Indices: 16125209--16125309 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
16125199 CATGCACATA
*
16125209 TTTGAGCTTCAACCAAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
1 TTTGAGCTTCAACCAAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
*
16125261 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
1 TTTGAGCTTCAACCAAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
16125310 CTTTTCCTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (52 bp):
TTTGAGCTTCAACCAAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
Found at i:16131511 original size:27 final size:27
Alignment explanation
Indices: 16131455--16131579 Score: 187
Period size: 27 Copynumber: 4.6 Consensus size: 27
16131445 TAAATTGTGC
16131455 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
16131483 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
16131510 AGCACTAACTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
16131538 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
16131565 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
16131580 GACTTAATAA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
27 49 0.54
28 42 0.46
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:16131523 original size:55 final size:55
Alignment explanation
Indices: 16131455--16131579 Score: 196
Period size: 55 Copynumber: 2.3 Consensus size: 55
16131445 TAAATTGTGC
* *
16131455 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGACTATAT
* * *
16131510 AGCACTAACTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGACTATAT
*
16131565 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
16131580 GACTTAATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:16145888 original size:70 final size:69
Alignment explanation
Indices: 16145768--16145951 Score: 244
Period size: 70 Copynumber: 2.7 Consensus size: 69
16145758 AACCCAAAAG
* * *
16145768 GTTAATGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTAACAGGTTCAATA-CAACAGCCCT
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAA-AGCCC-
16145832 TAAACA
64 TAAACA
* * * *
16145838 GTTAGTGAGAGTTAAAAGCTCCCAACTATCATTCTAATGCTCGCAAGTTCAATATCAAAGCTCTA
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAAAGCCCTA
16145903 AACA
66 AACA
* * * *
16145907 GTTAGCGATAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTCACA
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACA
16145952 GGTTTAACAT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 44 0.44
70 52 0.53
71 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (69 bp):
GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAAAGCCCTA
AACA
Found at i:16146105 original size:58 final size:56
Alignment explanation
Indices: 16145985--16146160 Score: 176
Period size: 58 Copynumber: 3.1 Consensus size: 56
16145975 CAGCTCACGA
* * * *
16145985 ATTTACATTCCCGACTAATTATTTCAAAAA-AAGGCCTAAGTTCAAAACAACTTGCGG
1 ATTTACATTCCCTACTAAGTATTTCAAAAATAA-GCCTAAGTT-AAAACAACTCGAGG
* * *
16146042 ATTTACATT-CCTAGCTGAGTATTTCAGAAAATATGCCTAAGTTGAAAACAGCTCGAGG
1 ATTTACATTCCCTA-CTAAGTATTTCA-AAAATAAGCCTAAGTT-AAAACAACTCGAGG
* * * *
16146100 GTTTACATTCCCTACTAATTATATCAAAAAATAAGCCTAAGCTTAAAACAACTTGAGG
1 ATTTACATTCCCTACTAAGTATTTC-AAAAATAAGCCTAAG-TTAAAACAACTCGAGG
16146158 ATT
1 ATT
16146161 CACAATCGAT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
56 3 0.03
57 19 0.20
58 67 0.69
59 8 0.08
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (56 bp):
ATTTACATTCCCTACTAAGTATTTCAAAAATAAGCCTAAGTTAAAACAACTCGAGG
Found at i:16147845 original size:15 final size:16
Alignment explanation
Indices: 16147815--16147846 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16147805 ACTTTAGGGG
16147815 CAAAAATGTAATTTTT
1 CAAAAATGTAATTTTT
*
16147831 CAAAAATGTGATTTTT
1 CAAAAATGTAATTTTT
16147847 GGACTTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (16 bp):
CAAAAATGTAATTTTT
Found at i:16148189 original size:51 final size:49
Alignment explanation
Indices: 16148068--16148314 Score: 230
Period size: 51 Copynumber: 4.9 Consensus size: 49
16148058 GTGAAAGTGA
* ** * *
16148068 TGGTCACGTGTGTAGTACTATGTTCAGGCTACTACGTGTACTAGAAT-GAT
1 TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTA-TCGGATAG-T
* ** * * *
16148118 AGGTCGTATGTGTAGTACTATGAGCAGGCTACTATGAGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGATAG-T
* *
16148168 TCGATCACGTGTGTAGTACTAT-ATGCAGGCTACTACGTGTATCGGATAGT
1 T-GGTCACATGTGTAGTACTATGA-GCAGGCTACTACGTGTATCGGATAGT
* *
16148218 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAATGA
1 --TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGAT-A-GT
* *
16148271 TGGTCACATGTGTAGTACTATGTA-CAGGCTACTATGTGAATCGG
1 TGGTCACATGTGTAGTACTATG-AGCAGGCTACTACGTGTATCGG
16148315 TATCATTAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 3 0.02
50 36 0.22
51 119 0.74
52 2 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGATAGT
Found at i:16148283 original size:102 final size:100
Alignment explanation
Indices: 16148065--16148314 Score: 290
Period size: 102 Copynumber: 2.5 Consensus size: 100
16148055 AAAGTGAAAG
* * **
16148065 TGATGGTCACGTGTGTAGTACTATGTTCAGGCTACTACGTGTA-CTAGAATGATAGGTCGTATGT
1 TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATC-GGAATGATAGGTCACATGT
*
16148129 GTAGTACTATGAGCAGGCTACTATGAGTACCGGATA
65 GTAGTACTATGAGCAGGCTACTACGAGTACCGGATA
* * * *
16148165 -GCTTCGATCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACA
1 TG-AT-GGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGGA-A-TGATAGGTCACA
* * *
16148228 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAA
62 TGTGTAGTACTATGAGCAGGCTACTACGAGTACCGGAT-A
* * *
16148268 TGATGGTCACATGTGTAGTACTATGTACAGGCTACTATGTGAATCGG
1 TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGG
16148315 TATCATTAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
99 1 0.01
100 1 0.01
101 38 0.30
102 78 0.62
103 6 0.05
104 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (100 bp):
TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGGAATGATAGGTCACATGTG
TAGTACTATGAGCAGGCTACTACGAGTACCGGATA
Found at i:16148553 original size:16 final size:16
Alignment explanation
Indices: 16148532--16148563 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
16148522 TGATTGAAAG
16148532 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
16148548 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
16148564 GCAACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:16154936 original size:5 final size:5
Alignment explanation
Indices: 16154926--16154950 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
16154916 GCATTCGTTG
16154926 TTCTT TTCTT TTCTT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT
16154951 GTTTTGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:16155512 original size:19 final size:19
Alignment explanation
Indices: 16155490--16155526 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16155480 TTATTAAAAT
* *
16155490 TTAAAAATATATAAAATTA
1 TTAAAAAAACATAAAATTA
16155509 TTAAAAAAACATAAAATT
1 TTAAAAAAACATAAAATT
16155527 CAATCCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
TTAAAAAAACATAAAATTA
Found at i:16163198 original size:15 final size:16
Alignment explanation
Indices: 16163180--16163217 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
16163170 TGTTAACAGC
*
16163180 TTAATAATTAACT-AT
1 TTAATAATTAAATAAT
16163195 TTAA-AATTAAATAAT
1 TTAATAATTAAATAAT
16163210 TTAATAAT
1 TTAATAAT
16163218 ATTTTCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 7 0.35
15 10 0.50
16 3 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATAATTAAATAAT
Found at i:16163378 original size:7 final size:7
Alignment explanation
Indices: 16163368--16163458 Score: 155
Period size: 7 Copynumber: 12.9 Consensus size: 7
16163358 AAGGATTGGG
16163368 AATTGAA
1 AATTGAA
16163375 AATTGAA
1 AATTGAA
16163382 AATTGAA
1 AATTGAA
16163389 AATTGAA
1 AATTGAA
*
16163396 AATTGAT
1 AATTGAA
*
16163403 GATTGAAA
1 AATTG-AA
16163411 AATTGAA
1 AATTGAA
16163418 AATTGAA
1 AATTGAA
16163425 AATTGAA
1 AATTGAA
16163432 AATTGAA
1 AATTGAA
16163439 AATTGAA
1 AATTGAA
16163446 AATTGAA
1 AATTGAA
16163453 AATTGA
1 AATTGA
16163459 GGATTGAGGA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
7 74 0.94
8 5 0.06
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (7 bp):
AATTGAA
Found at i:16163471 original size:14 final size:14
Alignment explanation
Indices: 16163359--16163501 Score: 81
Period size: 14 Copynumber: 10.1 Consensus size: 14
16163349 AAAATAACTA
*
16163359 AGGATTGGGAATTG
1 AGGATTGAGAATTG
** *
16163373 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
16163387 AAAATTGAAAATTG
1 AGGATTGAGAATTG
* *
16163401 ATGATTGAAAAATTG
1 AGGATTG-AGAATTG
** *
16163416 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
16163430 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
16163444 AAAATTGAAAATTG
1 AGGATTGAGAATTG
*
16163458 AGGATTGAGGATTG
1 AGGATTGAGAATTG
16163472 AGGATTGAGAACTT-
1 AGGATTGAGAA-TTG
*
16163486 AGGATTGAGTATTG
1 AGGATTGAGAATTG
16163500 AG
1 AG
16163502 TTGAAAAGAA
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
13 2 0.02
14 96 0.86
15 14 0.12
ACGTcount: A:0.45, C:0.01, G:0.24, T:0.29
Consensus pattern (14 bp):
AGGATTGAGAATTG
Found at i:16163502 original size:7 final size:7
Alignment explanation
Indices: 16163454--16163501 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
16163444 AAAATTGAAA
16163454 ATTGAGG
1 ATTGAGG
16163461 ATTGAGG
1 ATTGAGG
16163468 ATTGAGG
1 ATTGAGG
*
16163475 ATTGAGA
1 ATTGAGG
16163482 ACTT-AGG
1 A-TTGAGG
*
16163489 ATTGAGT
1 ATTGAGG
16163496 ATTGAG
1 ATTGAG
16163502 TTGAAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 2 0.06
7 32 0.89
8 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.35, T:0.31
Consensus pattern (7 bp):
ATTGAGG
Found at i:16163836 original size:10 final size:9
Alignment explanation
Indices: 16163813--16163943 Score: 61
Period size: 10 Copynumber: 13.7 Consensus size: 9
16163803 TTGGATTGTT
*
16163813 TTTTTATTA
1 TTTTTATAA
16163822 TTTTTATAA
1 TTTTTATAA
*
16163831 TATTTTATTTA
1 T-TTTTA-TAA
16163842 TATTTTA-ACA
1 T-TTTTATA-A
16163852 -TTTTATAA
1 TTTTTATAA
*
16163860 TATTTTATGA
1 T-TTTTATAA
* *
16163870 TTTTTTTATT
1 TTTTTATA-A
*
16163880 TTTTTAGAA
1 TTTTTATAA
16163889 TTTTTTATCAA
1 -TTTTTAT-AA
**
16163900 TTAATAGTAA
1 TTTTTA-TAA
16163910 TTTTTAT-A
1 TTTTTATAA
*
16163918 TTTTTATATT
1 TTTTTATA-A
16163928 TTTTTATAA
1 TTTTTATAA
16163937 TATTTTA
1 T-TTTTA
16163944 AACTAAATCT
Statistics
Matches: 92, Mismatches: 17, Indels: 25
0.69 0.13 0.19
Matches are distributed among these distances:
8 14 0.15
9 17 0.18
10 49 0.53
11 12 0.13
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:16163838 original size:19 final size:19
Alignment explanation
Indices: 16163814--16163882 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
16163804 TGGATTGTTT
16163814 TTTTATTATTTTTATAATA
1 TTTTATTATTTTTATAATA
* *
16163833 TTTTATTTATATTT-TAACA
1 TTTTA-TTATTTTTATAATA
* *
16163852 TTTTATAATATTTTATGAT-
1 TTTTATTAT-TTTTATAATA
16163871 TTTT-TTATTTTT
1 TTTTATTATTTTT
16163883 TTAGAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 6 0.15
19 21 0.52
20 9 0.22
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (19 bp):
TTTTATTATTTTTATAATA
Found at i:16163884 original size:29 final size:27
Alignment explanation
Indices: 16163811--16163896 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 27
16163801 ATTTGGATTG
16163811 TTTTTTTATTATTTTTATAATATTTTAT
1 TTTTTTTATT-TTTTTATAATATTTTAT
***
16163839 TTATATTTTAACATTTTATAATATTTTAT
1 TT-T-TTTTATTTTTTTATAATATTTTAT
* *
16163868 GATTTTTTTATTTTTTTAGAATTTTTTAT
1 --TTTTTTTATTTTTTTATAATATTTTAT
16163897 CAATTAATAG
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
28 2 0.04
29 36 0.78
30 6 0.13
31 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTTTTATTTTTTTATAATATTTTAT
Found at i:16163885 original size:48 final size:48
Alignment explanation
Indices: 16163813--16163944 Score: 135
Period size: 48 Copynumber: 2.7 Consensus size: 48
16163803 TTGGATTGTT
* * * *
16163813 TTTTTATTATTTTTATAATATTTTATTTATATTTTAAC-ATT-TTA-TAA
1 TTTTTA-TATTTTTATATTTTTTTA-TAATATTTTAACAATTAATAGTAA
* * * *
16163860 TATTTTATGATTTTTTTATTTTTTTAGAATTTTTTATCAATTAATAGTAA
1 T-TTTTAT-ATTTTTATATTTTTTTATAATATTTTAACAATTAATAGTAA
16163910 TTTTTATATTTTTATATTTTTTTATAATATTTTAA
1 TTTTTATATTTTTATATTTTTTTATAATATTTTAA
16163945 ACTAAATCTA
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
47 10 0.15
48 46 0.68
49 8 0.12
50 4 0.06
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (48 bp):
TTTTTATATTTTTATATTTTTTTATAATATTTTAACAATTAATAGTAA
Found at i:16165094 original size:16 final size:16
Alignment explanation
Indices: 16165042--16165094 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
16165032 GAAAGACCCT
16165042 AAAAATTTAAG-CTCAA
1 AAAAATTTAAGTC-CAA
* *
16165058 AAAAATTTAAATCCGA
1 AAAAATTTAAGTCCAA
*
16165074 AAAAATTCAAGTCCAA
1 AAAAATTTAAGTCCAA
16165090 AAAAA
1 AAAAA
16165095 CTAAAACTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.60, C:0.13, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAAATTTAAGTCCAA
Found at i:16174986 original size:166 final size:165
Alignment explanation
Indices: 16174690--16175246 Score: 740
Period size: 166 Copynumber: 3.4 Consensus size: 165
16174680 GGAAAGTGTC
* * *
16174690 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACATGTAGTGGCACTAGCAGCGTTTATCT
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
* * ** *
16174755 GGAAACGCCGATAAAGATCCAGCATTTGCGACGCTTATAAAATAACGCCGCTAATGA-CTGGTAC
66 GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAAAA-AACGCCGCTAAAGATC-GGTAC
* *
16174819 ATTAGCGGCGCTACCACAAAAACGCCACTAATGCTCA
129 ATTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* * *
16174856 GCAAATAATTAAACAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCC
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
* * * *
16174921 GTAAACGCCGGTAAAGATCTAGTATTTGCGGTGCTTATAACAAAACGCCACTAAAGATCGGTACA
66 GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAA-AAAACGCCGCTAAAGATCGGTACA
* * * *
16174986 TTATCGGTGCTACTACAAAAACTCCACTAATGCTCT
130 TTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* *
16175022 GCAAATAATTAAGCAGAAAACCATCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTATT-
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTT-TTC
* * * *
16175086 TGGAAACACCGGTAAAGATCAAGCAGTTACGGTGCTTATATTAAAACGCCGCTAAAGATCGGTAC
65 TGGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATA-AAAAACGCCGCTAAAGATCGGTAC
* * * *
16175151 ATTAGCGACGCTGCTATAAAAACACCACTAATGCTCC
129 ATTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* * * *
16175188 GTAAATAATTAAGCATAACGCCGTCGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGT
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGT
16175247 CTTTATACAA
Statistics
Matches: 342, Mismatches: 45, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
166 337 0.99
167 5 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (165 bp):
GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAAAAAACGCCGCTAAAGATCGGTACAT
TAGCGGCGCTACTACAAAAACACCACTAATGCTCA
Found at i:16175656 original size:23 final size:24
Alignment explanation
Indices: 16175605--16175650 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
16175595 GTCTTAGTTA
16175605 CTATTCATGGTTTAACAGGTTAGG
1 CTATTCATGGTTTAACAGGTTAGG
*
16175629 CTATT-ATGGTTTAA-GGGTTAGG
1 CTATTCATGGTTTAACAGGTTAGG
16175651 GTTATTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 9 0.43
24 5 0.24
ACGTcount: A:0.24, C:0.09, G:0.28, T:0.39
Consensus pattern (24 bp):
CTATTCATGGTTTAACAGGTTAGG
Found at i:16175860 original size:22 final size:22
Alignment explanation
Indices: 16175802--16175861 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
16175792 GTTGAGTGTT
* *
16175802 TAGGGGTGAG-GGCTTAGGGTT
1 TAGGGGTTAGTGGCTTAGGGTC
*
16175823 TAGGGGTTA-TAAGCTTAGGGTC
1 TAGGGGTTAGT-GGCTTAGGGTC
16175845 TAGGGGTTAGTGGCTTA
1 TAGGGGTTAGTGGCTTA
16175862 AAGTTACTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.43, T:0.32
Consensus pattern (22 bp):
TAGGGGTTAGTGGCTTAGGGTC
Found at i:16176004 original size:28 final size:28
Alignment explanation
Indices: 16175973--16176035 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
16175963 TAGGGTGTGT
*
16175973 ATTTACGGTTTAA-AGATTAAGGTTTAGG
1 ATTTA-GGTTTAAGAGATTAAGGTTTACG
* * *
16176001 ATTTAGTTTTAAGAGTTTAGGGTTTACG
1 ATTTAGGTTTAAGAGATTAAGGTTTACG
16176029 ATTTAGG
1 ATTTAGG
16176036 GTGTATGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (28 bp):
ATTTAGGTTTAAGAGATTAAGGTTTACG
Found at i:16176033 original size:14 final size:14
Alignment explanation
Indices: 16175973--16176067 Score: 54
Period size: 14 Copynumber: 6.9 Consensus size: 14
16175963 TAGGGTGTGT
*
16175973 ATTTACGGTTTAAAG
1 ATTTAGGGTTT-AAG
* *
16175988 A-TTAAGGTTTAGG
1 ATTTAGGGTTTAAG
*
16176001 ATTTA-GTTTTAAG
1 ATTTAGGGTTTAAG
*
16176014 AGTTTAGGGTTTACG
1 A-TTTAGGGTTTAAG
* *
16176029 ATTTAGGGTGTATG
1 ATTTAGGGTTTAAG
*
16176043 -TTTATGG-TTAAG
1 ATTTAGGGTTTAAG
*
16176055 TGTTTAGGGTTTA
1 -ATTTAGGGTTTA
16176068 GAGGTTAGAA
Statistics
Matches: 62, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
12 3 0.05
13 16 0.26
14 32 0.52
15 11 0.18
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (14 bp):
ATTTAGGGTTTAAG
Found at i:16176126 original size:21 final size:21
Alignment explanation
Indices: 16176102--16176154 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
16176092 GGCTAAGGGC
16176102 TTATGGTTTAGGGTTTAAAT-T
1 TTATGGTTTAGGGTTT-AATGT
** *
16176123 TTATATTTTAAGGTTTAATGT
1 TTATGGTTTAGGGTTTAATGT
*
16176144 TTAAGGTTTAG
1 TTATGGTTTAG
16176155 CTAAAAACAT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (21 bp):
TTATGGTTTAGGGTTTAATGT
Found at i:16176665 original size:83 final size:83
Alignment explanation
Indices: 16176543--16176794 Score: 248
Period size: 83 Copynumber: 3.1 Consensus size: 83
16176533 ACTGAAAGCA
* * * *
16176543 CCGCAAGGGTTT-TTAACAATTTGCCAATGCGGCACCGTTTTTGTACTGGAATAAAAATAATAGT
1 CCGCAAGGATTTATTAA-AATTTCCCAATGCGGCGCCGTTTCTGTACTGGAATAAAAATAATAGT
16176607 GGCGTTTTTTAGGAAAACG
65 GGCGTTTTTTAGGAAAACG
* * * ** *
16176626 CCGCAAGGATTTATTAAACTTTCCCAATGTGGCGTCGTTTCTGTACTGGGAA-AAATTTGATAGT
1 CCGCAAGGATTTATTAAAATTTCCCAATGCGGCGCCGTTTCTGTACT-GGAATAAAAATAATAGT
16176690 GGCGTTTTTTAGGAAAA--
65 GGCGTTTTTTAGGAAAACG
* * * * * ** *
16176707 -TGC-ATGTTTTATTAAATTTTTCCAATGCGGCGCCGTTTCTGTACT-TCATAAAAATCTAATAT
1 CCGCAAGGATTTATTAAAATTTCCCAATGCGGCGCCGTTTCTGTACTGGAATAAAAA--TAATAG
16176769 TGGCGTTTTTTAGGAAAACG
64 TGGCGTTTTTTAGGAAAACG
*
16176789 CTGCAA
1 CCGCAA
16176795 AAATGAATTA
Statistics
Matches: 137, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
77 1 0.01
78 3 0.02
79 36 0.26
80 24 0.18
83 64 0.47
84 9 0.07
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (83 bp):
CCGCAAGGATTTATTAAAATTTCCCAATGCGGCGCCGTTTCTGTACTGGAATAAAAATAATAGTG
GCGTTTTTTAGGAAAACG
Found at i:16178601 original size:18 final size:20
Alignment explanation
Indices: 16178570--16178715 Score: 95
Period size: 19 Copynumber: 7.2 Consensus size: 20
16178560 ACATAACTTA
16178570 TTAATATATA-TTTTAAAA-
1 TTAATATATATTTTTAAAAT
16178588 TT-ATATATATTTTTAAAAT
1 TTAATATATATTTTTAAAAT
16178607 TTAATATATATTTTT-AAAT
1 TTAATATATATTTTTAAAAT
* * *
16178626 TTAATTTAGCTTATTAACTTAACAT
1 TTAATATA---TATT--TTTAAAAT
* **
16178651 ATTAATATATATAATTTAACGT
1 -TTAATATATAT-TTTTAAAAT
* * *
16178673 ATTAATATATGTATTAAAAAT
1 -TTAATATATATTTTTAAAAT
*
16178694 TT-ATATATATTTTAAAAAT
1 TTAATATATATTTTTAAAAT
16178713 TTA
1 TTA
16178716 TCAATCATAT
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.07
18 10 0.10
19 30 0.29
20 14 0.14
21 6 0.06
22 21 0.20
23 3 0.03
24 2 0.02
25 3 0.03
26 7 0.07
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATATATATTTTTAAAAT
Found at i:16178796 original size:12 final size:12
Alignment explanation
Indices: 16178727--16178872 Score: 69
Period size: 12 Copynumber: 12.2 Consensus size: 12
16178717 CAATCATATC
16178727 ATAACTTACATA
1 ATAACTTACATA
*
16178739 CATAACTTAAATA
1 -ATAACTTACATA
* *
16178752 A-AATTTATAT-
1 ATAACTTACATA
16178762 ATAAACTTACACAATA
1 AT-AACTT--AC-ATA
16178778 CATAACTTACATA
1 -ATAACTTACATA
16178791 ATAACTTAC---
1 ATAACTTACATA
*
16178800 ATAACTTATAT-
1 ATAACTTACATA
*
16178811 ATAAACTTATAT-
1 AT-AACTTACATA
*
16178823 ATAAACTTATAT-
1 AT-AACTTACATA
*
16178835 ATAACTTTCATA
1 ATAACTTACATA
*
16178847 ACTTACTT--ATA
1 A-TAACTTACATA
16178858 ATAACTTACATA
1 ATAACTTACATA
16178870 ATA
1 ATA
16178873 CATAGCCTAC
Statistics
Matches: 109, Mismatches: 10, Indels: 29
0.74 0.07 0.20
Matches are distributed among these distances:
9 8 0.07
10 6 0.06
11 20 0.18
12 44 0.40
13 19 0.17
14 3 0.03
15 2 0.02
16 5 0.05
17 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:16178825 original size:14 final size:12
Alignment explanation
Indices: 16178802--16178838 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
16178792 TAACTTACAT
16178802 AACTTATATATA
1 AACTTATATATA
16178814 AACTTATATATA
1 AACTTATATATA
16178826 AACTTATATATA
1 AACTTATATATA
16178838 A
1 A
16178839 CTTTCATAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (12 bp):
AACTTATATATA
Found at i:16178892 original size:9 final size:9
Alignment explanation
Indices: 16178858--16179149 Score: 169
Period size: 9 Copynumber: 34.7 Consensus size: 9
16178848 CTTACTTATA
16178858 ATAACTTAC
1 ATAACTTAC
16178867 ATAA--TAC
1 ATAACTTAC
* *
16178874 ATAGCCTAC
1 ATAACTTAC
*
16178883 ATGACTTAC
1 ATAACTTAC
16178892 ATAA--TAC
1 ATAACTTAC
*
16178899 ACAACTTAC
1 ATAACTTAC
*
16178908 ATAACTTAA
1 ATAACTTAC
*
16178917 ATAACTTAT
1 ATAACTTAC
*
16178926 ATGA--TAC
1 ATAACTTAC
*
16178933 ATAACTTCC
1 ATAACTTAC
16178942 ATAACTTAC
1 ATAACTTAC
*
16178951 ATTA--TAC
1 ATAACTTAC
*
16178958 ACAACTTAC
1 ATAACTTAC
16178967 ATAACTTAC
1 ATAACTTAC
*
16178976 ATAGCTTAC
1 ATAACTTAC
*
16178985 AT-TC-TAC
1 ATAACTTAC
* *
16178992 ACAACTTAT
1 ATAACTTAC
16179001 ATAA-TATAC
1 ATAACT-TAC
16179010 ATAA--TAC
1 ATAACTTAC
*
16179017 ACAACTTAC
1 ATAACTTAC
*
16179026 ATAACATAC
1 ATAACTTAC
16179035 ATAA--TAC
1 ATAACTTAC
16179042 ATAACTTAC
1 ATAACTTAC
* *
16179051 ATAGCTAAC
1 ATAACTTAC
*
16179060 ATAA--AAC
1 ATAACTTAC
16179067 ATAACTTAC
1 ATAACTTAC
*
16179076 ATAACTTAT
1 ATAACTTAC
16179085 ATAA--TAC
1 ATAACTTAC
16179092 ATAACTTAC
1 ATAACTTAC
* *
16179101 ACAATTTAC
1 ATAACTTAC
*
16179110 TTAA--TAC
1 ATAACTTAC
* *
16179117 ATAA-ATAT
1 ATAACTTAC
* *
16179125 ATATCATATC
1 ATAACTTA-C
16179135 ATAACTTAC
1 ATAACTTAC
16179144 ATAACT
1 ATAACT
16179150 CATTTATACT
Statistics
Matches: 217, Mismatches: 44, Indels: 44
0.71 0.14 0.14
Matches are distributed among these distances:
7 58 0.27
8 8 0.04
9 145 0.67
10 6 0.03
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAACTTAC
Found at i:16178899 original size:16 final size:16
Alignment explanation
Indices: 16178886--16179053 Score: 55
Period size: 16 Copynumber: 10.6 Consensus size: 16
16178876 AGCCTACATG
16178886 ACTTACATAATACACA
1 ACTTACATAATACACA
* *
16178902 ACTTACATAACTTAAATA
1 ACTTACATAA--TACACA
* * *
16178920 ACTTATATGATACATA
1 ACTTACATAATACACA
*
16178936 ACTT-C--CATA-AC-
1 ACTTACATAATACACA
*
16178947 --TTACATTATACACA
1 ACTTACATAATACACA
*
16178961 ACTTACATAACTTACATA
1 ACTTACATAA--TACACA
* **
16178979 GCTTACATTCTACACA
1 ACTTACATAATACACA
* *
16178995 ACTTATATAATATACA
1 ACTTACATAATACACA
* * *
16179011 TA-ATACACAACTTACATA
1 -ACTTACATAA--TACACA
* *
16179029 ACATACATAATACATA
1 ACTTACATAATACACA
16179045 ACTTACATA
1 ACTTACATA
16179054 GCTAACATAA
Statistics
Matches: 110, Mismatches: 27, Indels: 30
0.66 0.16 0.18
Matches are distributed among these distances:
9 2 0.02
10 1 0.01
12 4 0.04
13 5 0.05
16 61 0.55
17 2 0.02
18 35 0.32
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (16 bp):
ACTTACATAATACACA
Found at i:16178924 original size:59 final size:58
Alignment explanation
Indices: 16178851--16179095 Score: 215
Period size: 59 Copynumber: 4.3 Consensus size: 58
16178841 TTCATAACTT
* *
16178851 ACTTATAATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTACATA
1 ACTTA-AATAACTTACATAATACATAACTTACAT-ACTTACATAATACACAACTTACATA
* * * *
16178911 ACTTAAATAACTTATATGATACATAACTTCCATAACTTACATTATACACAACTTACATA
1 ACTTAAATAACTTACATAATACATAACTTACAT-ACTTACATAATACACAACTTACATA
* * ** * * *
16178970 ACTTACATAGCTTACATTCTACACAACTTATATAATATACATAATACACAACTTACATA
1 ACTTAAATAACTTACATAATACATAACTTACATACT-TACATAATACACAACTTACATA
* * *
16179029 AC-------A--TACATAATACATAACTTACATAGCTAACATAAAACATAACTTACATA
1 ACTTAAATAACTTACATAATACATAACTTACATA-CTTACATAATACACAACTTACATA
*
16179079 ACTTATATAA--TACATAA
1 ACTTAAATAACTTACATAA
16179096 CTTACACAAT
Statistics
Matches: 150, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
50 39 0.26
51 1 0.01
57 8 0.05
58 2 0.01
59 95 0.63
60 5 0.03
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (58 bp):
ACTTAAATAACTTACATAATACATAACTTACATACTTACATAATACACAACTTACATA
Found at i:16178933 original size:25 final size:25
Alignment explanation
Indices: 16178835--16178977 Score: 109
Period size: 25 Copynumber: 5.8 Consensus size: 25
16178825 AAACTTATAT
* *
16178835 ATAACTTTCATAACTTAC-TTATA-
1 ATAACTTACATAACTTACATGATAC
*
16178858 ATAACTTACATAA--TACATAGCCTAC
1 ATAACTTACATAACTTACAT-G-ATAC
* **
16178883 ATGACTTACATAA--TACACAACTTAC
1 ATAACTTACATAACTTACATGA--TAC
* *
16178908 ATAACTTAAATAACTTATATGATAC
1 ATAACTTACATAACTTACATGATAC
* *
16178933 ATAACTTCCATAACTTACATTATAC
1 ATAACTTACATAACTTACATGATAC
*
16178958 ACAACTTACATAACTTACAT
1 ATAACTTACATAACTTACAT
16178978 AGCTTACATT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
21 3 0.03
22 1 0.01
23 12 0.13
24 2 0.02
25 72 0.77
27 4 0.04
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (25 bp):
ATAACTTACATAACTTACATGATAC
Found at i:16178992 original size:25 final size:25
Alignment explanation
Indices: 16178964--16179120 Score: 172
Period size: 25 Copynumber: 6.3 Consensus size: 25
16178954 ATACACAACT
* **
16178964 TACATAACTTACATAGCTTACATTC
1 TACATAACTTACATAACTTACATAA
* *
16178989 TACACAACTTATATAA-TATACATAA
1 TACATAACTTACATAACT-TACATAA
* *
16179014 TACACAACTTACATAACATACATAA
1 TACATAACTTACATAACTTACATAA
* *
16179039 TACATAACTTACATAGCTAACATAA
1 TACATAACTTACATAACTTACATAA
* *
16179064 AACATAACTTACATAACTTATATAA
1 TACATAACTTACATAACTTACATAA
* * *
16179089 TACATAACTTACACAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
16179114 TACATAA
1 TACATAA
16179121 ATATATATCA
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
24 1 0.01
25 109 0.99
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:16179062 original size:50 final size:50
Alignment explanation
Indices: 16178941--16179120 Score: 186
Period size: 50 Copynumber: 3.6 Consensus size: 50
16178931 ACATAACTTC
* * **
16178941 CATAACTTACAT--TATACACAACTTACATAACTTACATAGCTTACATTCTA
1 CATAACTTACATAATATACATAA--TACATAACTTACATAACTTACATAATA
* * * *
16178991 CACAACTTATATAATATACATAATACACAACTTACATAACATACATAATA
1 CATAACTTACATAATATACATAATACATAACTTACATAACTTACATAATA
* * *
16179041 CATAACTTACATAGCTA-ACATAAAACATAACTTACATAACTTATATAATA
1 CATAACTTACATA-ATATACATAATACATAACTTACATAACTTACATAATA
* * *
16179091 CATAACTTACACAATTTACTTAATACATAA
1 CATAACTTACATAATATACATAATACATAA
16179121 ATATATATCA
Statistics
Matches: 106, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
49 1 0.01
50 95 0.90
51 2 0.02
52 8 0.08
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (50 bp):
CATAACTTACATAATATACATAATACATAACTTACATAACTTACATAATA
Found at i:16184643 original size:21 final size:21
Alignment explanation
Indices: 16184619--16184660 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
16184609 AGTAGAGGCG
*
16184619 GCAGCGAGGGAAGCAGAGGTT
1 GCAGCGAGAGAAGCAGAGGTT
16184640 GCAGCGAGAGAAGCAGAGGTT
1 GCAGCGAGAGAAGCAGAGGTT
16184661 CAAAAGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.45, T:0.10
Consensus pattern (21 bp):
GCAGCGAGAGAAGCAGAGGTT
Found at i:16184719 original size:87 final size:87
Alignment explanation
Indices: 16184568--16184744 Score: 255
Period size: 87 Copynumber: 2.0 Consensus size: 87
16184558 GACCATAGTT
* * * *
16184568 GAGGTTCAAAGGAAATATGAAGAACTCTAGCTACAACTTAAAGTAGAGGCGGCAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
* *
16184633 AGAGGTTGCAGCGAGAGAAGCA
66 AGAGGCTGCAGCGAGAGAAACA
* * * *
16184655 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAATTTAAAGCAGATGTGGCATCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
*
16184720 AGAGGCTGCAGCGAGGGAAACA
66 AGAGGCTGCAGCGAGAGAAACA
16184742 GAG
1 GAG
16184745 CAGAGCAGAA
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.40, C:0.15, G:0.32, T:0.14
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
AGAGGCTGCAGCGAGAGAAACA
Found at i:16185211 original size:43 final size:43
Alignment explanation
Indices: 16185134--16185363 Score: 261
Period size: 43 Copynumber: 5.3 Consensus size: 43
16185124 AGAACATGAC
* * *
16185134 CTTTACCGGCGTTTGTGGGAAAAAACGCCGCTAAAAGTCATGCT
1 CTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAAGTCATGTT
* *
16185178 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTCATATT
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTCATGTT
* *
16185221 CTTTAGCGGCGTTTGTTGG-AGAAGCACCGCTAAAAGTCATGTT
1 CTTTAGCGGCGTTTG-TGGAAAAAGCGCCGCTAAAAGTCATGTT
* * * *
16185264 CTTTAGTGGCGTTTGTGAAAAAAGCGCCGCT-AAAGAACATGTC
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAG-TCATGTT
**
16185307 CTTTAGCGGCGTTTGTAGGAAAAA-CGCCGCTAAAGAG-CATGAC
1 CTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAA-AGTCATGTT
*
16185350 CTTTAGTGGCGTTT
1 CTTTAGCGGCGTTT
16185364 ATTTCTATAA
Statistics
Matches: 161, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
42 6 0.04
43 128 0.80
44 25 0.16
45 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTCATGTT
Found at i:16185286 original size:86 final size:86
Alignment explanation
Indices: 16185120--16185363 Score: 296
Period size: 86 Copynumber: 2.8 Consensus size: 86
16185110 AGAAGCACTT
* * * *
16185120 CTAAAGAACATGA-CCTTTACCGGCGTTTGTGGGAAAAAACGCCGCTAAAAGTCATGCTCTATAG
1 CTAAAGAACAT-ATCCTTTAGCGGCGTTTGTAGG-AAAAACGCCGCTAAAAGTCATGATCTTTAG
* *
16185184 CGGCGTTTGTGGAAAAAGCGCCG
64 TGGCGTTTGTGAAAAAAGCGCCG
* * * * * * *
16185207 CTAAA-AGTCATATTCTTTAGCGGCGTTTGTTGGAGAAGCACCGCTAAAAGTCATGTTCTTTAGT
1 CTAAAGA-ACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAAGTCATGATCTTTAGT
16185271 GGCGTTTGTGAAAAAAGCGCCG
65 GGCGTTTGTGAAAAAAGCGCCG
* *
16185293 CTAAAGAACATGTCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAGAG-CATGACCTTTAGT
1 CTAAAGAACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAA-AGTCATGATCTTTAGT
16185357 GGCGTTT
65 GGCGTTT
16185364 ATTTCTATAA
Statistics
Matches: 133, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
86 105 0.79
87 28 0.21
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (86 bp):
CTAAAGAACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAAGTCATGATCTTTAGTG
GCGTTTGTGAAAAAAGCGCCG
Found at i:16185689 original size:9 final size:9
Alignment explanation
Indices: 16185672--16185708 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
16185662 TGGGTTTTTG
16185672 AATTCGAAT
1 AATTCGAAT
*
16185681 AACTCGAAT
1 AATTCGAAT
16185690 AATTCGAAT
1 AATTCGAAT
16185699 AATTCGAAT
1 AATTCGAAT
16185708 A
1 A
16185709 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:16185956 original size:30 final size:31
Alignment explanation
Indices: 16185922--16185981 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
16185912 AAACATTTTA
*
16185922 TTTTTCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
* *
16185952 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCA
16185982 TGTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:16188536 original size:6 final size:6
Alignment explanation
Indices: 16188527--16188575 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
16188517 TATTTCCTAA
* * *
16188527 TTTGAG TTTGAG TTTGAC TTTAAC TTTGAC TTTGAC TTTGAC TTTGAC
1 TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC
16188575 T
1 T
16188576 AGCGAACCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.51
Consensus pattern (6 bp):
TTTGAC
Found at i:16189105 original size:15 final size:15
Alignment explanation
Indices: 16189065--16189101 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
16189055 GTAGAAAAAT
16189065 AATAATAATAATCAA
1 AATAATAATAATCAA
*
16189080 AATGATAATAAT-AA
1 AATAATAATAATCAA
16189094 AATAATAA
1 AATAATAA
16189102 ATAACATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (15 bp):
AATAATAATAATCAA
Found at i:16192192 original size:42 final size:43
Alignment explanation
Indices: 16192136--16192223 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 43
16192126 TAGCGACATT
* * *
16192136 TTTAGAAATAAACGCCGCTAAAGGTGT-TGGTCTATAGCGGCGC
1 TTTACAAATAAACGCCGCTAAAGAT-TAGGGTCTATAGCGGCGC
*
16192179 TTTACAAA-AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGC
1 TTTACAAATAAACGCCGCTAAAGATTAGGGTCTATAGCGGCGC
16192221 TTT
1 TTT
16192224 CCCCACAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.03
42 32 0.80
43 7 0.17
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
TTTACAAATAAACGCCGCTAAAGATTAGGGTCTATAGCGGCGC
Found at i:16192255 original size:43 final size:43
Alignment explanation
Indices: 16192170--16192353 Score: 189
Period size: 43 Copynumber: 4.3 Consensus size: 43
16192160 TGTTGGTCTA
* *
16192170 TAGCGGCGCTTTA-CAAAAAACGCCGCTAAAG-A--TTAGGGTCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTA---TCTT
** * *
16192212 TAGCGGCGCTTTCCCCACAAACGCCGCAAAAGAACCTGATCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
** *
16192255 TAGCGGTACTTTATCCACAAACGCCGCTAAAGACCCTTATCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
*
16192298 TAGCGGCGCTTTATCCACAAACACCGCTAAAG-ACCATTATCTTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACC-TTATC-TT
*
16192342 TAGCGACGCTTT
1 TAGCGGCGCTTT
16192354 TGTTGAAAAC
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
42 14 0.12
43 89 0.75
44 14 0.12
46 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
Found at i:16192792 original size:66 final size:66
Alignment explanation
Indices: 16192722--16192863 Score: 198
Period size: 66 Copynumber: 2.2 Consensus size: 66
16192712 ACGCTGCACT
* *
16192722 GCTTCTCTCGCTGCCGTATCTACTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACC
1 GCTTCTCTCGCTACCGCATCTACTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTTGAACC
16192785 TCA
64 TCA
* * * *
16192788 GCTTCTCTCGCTACTGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTC
1 GCTTCTCTCGCTACCGCATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTC
16192853 A
66 A
16192854 GCTTCTCTCG
1 GCTTCTCTCG
16192864 ATGTTGCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 1 0.01
66 63 0.93
67 4 0.06
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (66 bp):
GCTTCTCTCGCTACCGCATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTC
A
Found at i:16192879 original size:66 final size:66
Alignment explanation
Indices: 16192756--16192886 Score: 192
Period size: 66 Copynumber: 2.0 Consensus size: 66
16192746 TTAAGCTGCT
* *
16192756 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTACTGCATCTGCTTTAAGTTGT
1 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTGT
16192821 A
66 A
* ** *
16192822 GCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTG
1 GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTG
16192886 T
65 T
16192887 GTAATTTGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
66 54 0.93
67 4 0.07
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.41
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTGT
A
Found at i:16209052 original size:9 final size:9
Alignment explanation
Indices: 16209038--16209339 Score: 214
Period size: 9 Copynumber: 35.9 Consensus size: 9
16209028 AATTGCACGA
16209038 GTAAGTTAT
1 GTAAGTTAT
16209047 GTAAGTTAT
1 GTAAGTTAT
*
16209056 TTAAGTTAT
1 GTAAGTTAT
*
16209065 GTAAGTTGT
1 GTAAGTTAT
16209074 GT-A-TTAT
1 GTAAGTTAT
16209081 GTAAGTTAT
1 GTAAGTTAT
*
16209090 -T-A-TTCT
1 GTAAGTTAT
16209096 GTAAGTTAT
1 GTAAGTTAT
* *
16209105 GAAAGTAAT
1 GTAAGTTAT
16209114 GT-A-TTAT
1 GTAAGTTAT
*
16209121 GTAAGTTGT
1 GTAAGTTAT
*
16209130 GT-A-TAAT
1 GTAAGTTAT
*
16209137 GTTAGTTAT
1 GTAAGTTAT
**
16209146 CAAAGTTAT
1 GTAAGTTAT
16209155 GT-A-TTAT
1 GTAAGTTAT
16209162 GTAAGTTAT
1 GTAAGTTAT
*
16209171 TTAAGTTAT
1 GTAAGTTAT
*
16209180 GTAAGTTGT
1 GTAAGTTAT
16209189 GT-A-TTAT
1 GTAAGTTAT
16209196 GTAAGTTAT
1 GTAAGTTAT
* *
16209205 GTAGGCTAT
1 GTAAGTTAT
* *
16209214 GTATGTTAA
1 GTAAGTTAT
*
16209223 GTAAGTAAT
1 GTAAGTTAT
16209232 GT-A-TTAT
1 GTAAGTTAT
*
16209239 GTAAGTTGT
1 GTAAGTTAT
*
16209248 GT-A-TAAT
1 GTAAGTTAT
*
16209255 GTTAGTTAT
1 GTAAGTTAT
**
16209264 CAAAGTTAT
1 GTAAGTTAT
16209273 GT-A-TTAT
1 GTAAGTTAT
16209280 GTAAGTTAT
1 GTAAGTTAT
*
16209289 TTAAGTTAT
1 GTAAGTTAT
*
16209298 GTAAGTTGT
1 GTAAGTTAT
16209307 GT-A-TTAT
1 GTAAGTTAT
16209314 GTAAGTTAT
1 GTAAGTTAT
* *
16209323 GTAGGCTAT
1 GTAAGTTAT
*
16209332 GTATGTTA
1 GTAAGTTA
16209340 AGTTTCTGTC
Statistics
Matches: 223, Mismatches: 49, Indels: 42
0.71 0.16 0.13
Matches are distributed among these distances:
6 3 0.01
7 47 0.21
8 20 0.09
9 153 0.69
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:16209086 original size:25 final size:26
Alignment explanation
Indices: 16209041--16209339 Score: 175
Period size: 25 Copynumber: 11.9 Consensus size: 26
16209031 TGCACGAGTA
*
16209041 AGTTATGTAAGTTATTTAAGTTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
*
16209067 AAGTTGTGT-A-TTATGTAAGTTAT-T
1 -AGTTATGTAAGTTATGTAAGTTATGT
* * *
16209091 A-TTCTGTAAGTTATGAAAGTAATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
16209116 A-TTATGTAAGTTGTGT-A-TAATGTT
1 AGTTATGTAAGTTATGTAAGTTATG-T
**
16209140 AGTTATCAAAGTTATGT-A-TTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
16209164 AAGTTATTTAAGTTATGTAAGTTGTGT
1 -AGTTATGTAAGTTATGTAAGTTATGT
* *
16209191 A-TTATGTAAGTTATGTAGGCTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
16209216 ATGTTAAGTAAGTAATGT-A-TTATGT
1 A-GTTATGTAAGTTATGTAAGTTATGT
* * * **
16209241 AAGTTGTGT-A-TAATGTTAGTTATCAA
1 -AGTTATGTAAGTTATGTAAGTTAT-GT
*
16209267 AGTTATGT-A-TTATGTAAGTTATTT
1 AGTTATGTAAGTTATGTAAGTTATGT
*
16209291 AAGTTATGTAAGTTGTGT-A-TTATGT
1 -AGTTATGTAAGTTATGTAAGTTATGT
* * *
16209316 AAGTTATGTAGGCTATGTATGTTA
1 -AGTTATGTAAGTTATGTAAGTTA
16209340 AGTTTCTGTC
Statistics
Matches: 215, Mismatches: 38, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
22 5 0.02
23 13 0.06
24 18 0.08
25 140 0.65
26 6 0.03
27 33 0.15
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (26 bp):
AGTTATGTAAGTTATGTAAGTTATGT
Found at i:16209098 original size:15 final size:16
Alignment explanation
Indices: 16209043--16209325 Score: 134
Period size: 16 Copynumber: 17.0 Consensus size: 16
16209033 CACGAGTAAG
*
16209043 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
16209060 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
16209077 TTATGTAAGTTAT-TA
1 TTATGTAAGTTATGTA
* *
16209092 TTCTGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
*
16209109 GTAATGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* *
16209125 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
16209141 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
*
16209158 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
16209175 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
16209192 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* * *
16209208 GGCTATGTATGTTAAGTAA
1 --TTATGTAAGTTATGT-A
*
16209227 GTAATGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* *
16209243 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
16209259 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
*
16209276 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
16209293 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
16209310 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
16209326 GGCTATGTAT
Statistics
Matches: 207, Mismatches: 41, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
15 14 0.07
16 109 0.53
17 15 0.07
18 68 0.33
19 1 0.00
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:16209271 original size:118 final size:118
Alignment explanation
Indices: 16209043--16209342 Score: 534
Period size: 118 Copynumber: 2.6 Consensus size: 118
16209033 CACGAGTAAG
* * * *
16209043 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTAT-TA--TTCTGTAAGTTAT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
*
16209105 GAAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
16209158 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
16209223 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
16209276 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
16209341 GT
66 GT
16209343 TTCTGTCGAG
Statistics
Matches: 177, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
115 47 0.27
116 2 0.01
118 128 0.72
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (118 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:16209334 original size:34 final size:34
Alignment explanation
Indices: 16209043--16209221 Score: 115
Period size: 34 Copynumber: 4.9 Consensus size: 34
16209033 CACGAGTAAG
* * *
16209043 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
* * *
16209077 TTATGTAAGTTATTATTCTGTAAGTTATGAAAGTAATGTA
1 TTATGTAAG---TTA---TGTAAGCTATGTAAGTTATGTA
* * *
16209117 TTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
1 TTATGTAAGTTATG--TAA-GCTA--TGT--AAGTTATGTA
* * *
16209158 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
* *
16209192 TTATGTAAGTTATGTAGGCTATGTATGTTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTA
16209222 AGTAAGTAAT
Statistics
Matches: 115, Mismatches: 17, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
34 45 0.39
36 5 0.04
37 9 0.08
38 4 0.03
39 4 0.03
40 27 0.23
41 21 0.18
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
Found at i:16209641 original size:9 final size:9
Alignment explanation
Indices: 16209627--16209730 Score: 92
Period size: 9 Copynumber: 11.8 Consensus size: 9
16209617 AATTGCACGA
16209627 GTAAGTTAT
1 GTAAGTTAT
16209636 GTAAGTTAT
1 GTAAGTTAT
*
16209645 TTAAGTTAT
1 GTAAGTTAT
*
16209654 GTAAGTTGT
1 GTAAGTTAT
16209663 GT-A-TTAT
1 GTAAGTTAT
16209670 GTAAGTTAT
1 GTAAGTTAT
* *
16209679 GTAGGCTAT
1 GTAAGTTAT
16209688 GT-A-TTAT
1 GTAAGTTAT
16209695 GTAAGTTAT
1 GTAAGTTAT
*
16209704 -TATGTTATTAT
1 GTAAG---TTAT
16209715 GTAAGTTAT
1 GTAAGTTAT
*
16209724 GCAAGTT
1 GTAAGTT
16209731 TATATATCAG
Statistics
Matches: 76, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
7 10 0.13
8 6 0.08
9 53 0.70
11 4 0.05
12 3 0.04
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:16209671 original size:16 final size:16
Alignment explanation
Indices: 16209632--16209681 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
16209622 CACGAGTAAG
*
16209632 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
16209649 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
16209666 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
16209682 GGCTATGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.52
17 1 0.03
18 13 0.45
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:16209714 original size:20 final size:19
Alignment explanation
Indices: 16209685--16209723 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
16209675 TTATGTAGGC
16209685 TATGTATTATGTAAGTTAT
1 TATGTATTATGTAAGTTAT
16209704 TATGTTATTATGTAAGTTAT
1 TATG-TATTATGTAAGTTAT
16209724 GCAAGTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (19 bp):
TATGTATTATGTAAGTTAT
Found at i:16209925 original size:121 final size:121
Alignment explanation
Indices: 16209777--16210095 Score: 593
Period size: 121 Copynumber: 2.6 Consensus size: 121
16209767 TATGTATCCT
*
16209777 ATTTATAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
16209842 CATACCATATATGGGGTGATATATTAAAAATATAAGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAAGTTTTAATATTTAAAAATAAC
*
16209898 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAACTGACATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
*
16209963 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAAGTTTTAATATTTAAAAATAAC
* *
16210019 ATTTACAATTATTTTTAAAATTATAAAATTTATGGACAATAAAATTGAAATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
16210084 CATACCATATAT
66 CATACCATATAT
16210096 ATAAATTTTA
Statistics
Matches: 192, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 192 1.00
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (121 bp):
ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
CATACCATATATGGGGTGATATATTAAAAATATAAGTTTTAATATTTAAAAATAAC
Found at i:16210180 original size:17 final size:17
Alignment explanation
Indices: 16210115--16210974 Score: 211
Period size: 17 Copynumber: 50.1 Consensus size: 17
16210105 AAATATATAT
16210115 ATATATTTTAAGTAATGTA
1 ATATATTTT-AGTAA-GTA
*
16210134 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210152 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210173 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210191 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
* ** *
16210208 ATGTAAGTAATGTAA-TA
1 ATATATTTTA-GTAAGTA
*
16210225 TATACTTTAATTTTAGTAAGTC
1 -ATA---T-ATTTTAGTAAGTA
*
16210247 ATGTA--TT--TAAGTA
1 ATATATTTTAGTAAGTA
16210260 ATATA--TT--TAAGT-
1 ATATATTTTAGTAAGTA
*
16210272 A-A-ATTTTAGTAATTA
1 ATATATTTTAGTAAGTA
*
16210287 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210305 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210326 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210344 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
* ** *
16210361 ATGTAAGTAATGTAA-TA
1 ATATATTTTA-GTAAGTA
*
16210378 TATACTTTAATTTTAGTAAGTC
1 -ATA---T-ATTTTAGTAAGTA
*
16210400 ATGTA--TT--TAAGTA
1 ATATATTTTAGTAAGTA
16210413 ATATA--TT--TAAGT-
1 ATATATTTTAGTAAGTA
*
16210425 A-A-ATTTTAGTAATTA
1 ATATATTTTAGTAAGTA
*
16210440 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210458 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210479 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210497 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
* ** *
16210514 ATGTAAGTAATGTAA-TA
1 ATATATTTTA-GTAAGTA
*
16210531 TATACTTTAATTTTAGTAAGTC
1 -ATA---T-ATTTTAGTAAGTA
*
16210553 ATGTA--TT--TAAGTA
1 ATATATTTTAGTAAGTA
16210566 ATATA--TT--TAAGT-
1 ATATATTTTAGTAAGTA
*
16210578 A-A-ATTTTAGTAATTA
1 ATATATTTTAGTAAGTA
*
16210593 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210611 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210632 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210650 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
* ** *
16210667 ATGTAAGTAATGTAA-TA
1 ATATATTTTA-GTAAGTA
*
16210684 TATACTTTAATTTTAGTAAGTC
1 -ATA---T-ATTTTAGTAAGTA
*
16210706 ATGTA--TT--TAAGTA
1 ATATATTTTAGTAAGTA
16210719 ATATA--TT--TAAGT-
1 ATATATTTTAGTAAGTA
*
16210731 A-A-ATTTTAGTAATTA
1 ATATATTTTAGTAAGTA
*
16210746 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210764 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210785 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210803 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
* ** *
16210820 ATGTAAGTAATGTAA-TA
1 ATATATTTTA-GTAAGTA
*
16210837 TATACTTTAATTTTAGTAAGTC
1 -ATA---T-ATTTTAGTAAGTA
*
16210859 ATGTA--TT--TAAGTA
1 ATATATTTTAGTAAGTA
16210872 ATATA--TT--TAAGT-
1 ATATATTTTAGTAAGTA
*
16210884 A-A-ATTTTAGTAATTA
1 ATATATTTTAGTAAGTA
*
16210899 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
*
16210917 AGTTATAAATTTTTGTAAGTA
1 A--TAT--ATTTTAGTAAGTA
*
16210938 ATATATTTAAGTAATGTA
1 ATATATTTTAGTAA-GTA
16210956 ATATATTTTAGTAAGTA
1 ATATATTTTAGTAAGTA
16210973 AT
1 AT
16210975 GTAAGTAATG
Statistics
Matches: 630, Mismatches: 106, Indels: 212
0.66 0.11 0.22
Matches are distributed among these distances:
10 5 0.01
11 5 0.01
12 15 0.02
13 80 0.13
14 20 0.03
15 15 0.02
16 5 0.01
17 158 0.25
18 156 0.25
19 26 0.04
20 18 0.03
21 59 0.09
22 68 0.11
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (17 bp):
ATATATTTTAGTAAGTA
Found at i:16210266 original size:13 final size:13
Alignment explanation
Indices: 16210250--16210340 Score: 64
Period size: 13 Copynumber: 6.9 Consensus size: 13
16210240 GTAAGTCATG
16210250 TATTTAAGTAATA
1 TATTTAAGTAATA
16210263 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16210275 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
*
16210290 TATTTAAGTAATG
1 TATTTAAGTAATA
*
16210303 TAAGTT-A-TAA-A
1 T-ATTTAAGTAATA
*
16210314 TTTTTGTAAGTAATA
1 -TATT-TAAGTAATA
16210329 TATTTAAGTAAT
1 TATTTAAGTAAT
16210341 GTAATATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 15 0.25
15 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16210419 original size:13 final size:13
Alignment explanation
Indices: 16210403--16210493 Score: 64
Period size: 13 Copynumber: 6.9 Consensus size: 13
16210393 GTAAGTCATG
16210403 TATTTAAGTAATA
1 TATTTAAGTAATA
16210416 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16210428 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
*
16210443 TATTTAAGTAATG
1 TATTTAAGTAATA
*
16210456 TAAGTT-A-TAA-A
1 T-ATTTAAGTAATA
*
16210467 TTTTTGTAAGTAATA
1 -TATT-TAAGTAATA
16210482 TATTTAAGTAAT
1 TATTTAAGTAAT
16210494 GTAATATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 15 0.25
15 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16210572 original size:13 final size:13
Alignment explanation
Indices: 16210556--16210646 Score: 64
Period size: 13 Copynumber: 6.9 Consensus size: 13
16210546 GTAAGTCATG
16210556 TATTTAAGTAATA
1 TATTTAAGTAATA
16210569 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16210581 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
*
16210596 TATTTAAGTAATG
1 TATTTAAGTAATA
*
16210609 TAAGTT-A-TAA-A
1 T-ATTTAAGTAATA
*
16210620 TTTTTGTAAGTAATA
1 -TATT-TAAGTAATA
16210635 TATTTAAGTAAT
1 TATTTAAGTAAT
16210647 GTAATATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 15 0.25
15 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16210725 original size:13 final size:13
Alignment explanation
Indices: 16210709--16210799 Score: 64
Period size: 13 Copynumber: 6.9 Consensus size: 13
16210699 GTAAGTCATG
16210709 TATTTAAGTAATA
1 TATTTAAGTAATA
16210722 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16210734 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
*
16210749 TATTTAAGTAATG
1 TATTTAAGTAATA
*
16210762 TAAGTT-A-TAA-A
1 T-ATTTAAGTAATA
*
16210773 TTTTTGTAAGTAATA
1 -TATT-TAAGTAATA
16210788 TATTTAAGTAAT
1 TATTTAAGTAAT
16210800 GTAATATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 15 0.25
15 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16210878 original size:13 final size:13
Alignment explanation
Indices: 16210862--16210952 Score: 64
Period size: 13 Copynumber: 6.9 Consensus size: 13
16210852 GTAAGTCATG
16210862 TATTTAAGTAATA
1 TATTTAAGTAATA
16210875 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16210887 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
*
16210902 TATTTAAGTAATG
1 TATTTAAGTAATA
*
16210915 TAAGTT-A-TAA-A
1 T-ATTTAAGTAATA
*
16210926 TTTTTGTAAGTAATA
1 -TATT-TAAGTAATA
16210941 TATTTAAGTAAT
1 TATTTAAGTAAT
16210953 GTAATATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 15 0.25
15 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16211031 original size:13 final size:13
Alignment explanation
Indices: 16211015--16211066 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
16211005 GTAAGTCATG
16211015 TATTTAAGTAATA
1 TATTTAAGTAATA
16211028 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
16211040 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
16211055 TATTTAAGTAAT
1 TATTTAAGTAAT
16211067 GTAAGTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 4 0.12
13 18 0.56
14 6 0.19
15 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:16211097 original size:153 final size:153
Alignment explanation
Indices: 16210119--16211082 Score: 1910
Period size: 153 Copynumber: 6.3 Consensus size: 153
16210109 ATATATATAT
16210119 ATTTTAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAG
1 ATTTT-AGTAAT-TAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAG
16210184 TAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCAT
64 TAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCAT
16210249 GTATTTAAGTAATATATTTAAGTAA
129 GTATTTAAGTAATATATTTAAGTAA
16210274 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
16210339 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
66 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
16210404 ATTTAAGTAATATATTTAAGTAA
131 ATTTAAGTAATATATTTAAGTAA
16210427 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
16210492 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
66 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
16210557 ATTTAAGTAATATATTTAAGTAA
131 ATTTAAGTAATATATTTAAGTAA
16210580 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
16210645 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
66 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
16210710 ATTTAAGTAATATATTTAAGTAA
131 ATTTAAGTAATATATTTAAGTAA
16210733 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
16210798 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
66 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
16210863 ATTTAAGTAATATATTTAAGTAA
131 ATTTAAGTAATATATTTAAGTAA
16210886 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
16210951 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
66 ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
16211016 ATTTAAGTAATATATTTAAGTAA
131 ATTTAAGTAATATATTTAAGTAA
16211039 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTT
1 ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTT
16211083 AAAAATATAT
Statistics
Matches: 809, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
153 798 0.99
154 6 0.01
155 5 0.01
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (153 bp):
ATTTTAGTAATTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAAGTCATGT
ATTTAAGTAATATATTTAAGTAA
Found at i:16211118 original size:21 final size:21
Alignment explanation
Indices: 16211094--16211133 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16211084 AAAATATATA
* *
16211094 TATTAATAATTCATTGACATT
1 TATTAACAATTCACTGACATT
*
16211115 TATTCACAATTCACTGACA
1 TATTAACAATTCACTGACA
16211134 GTCAATCAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (21 bp):
TATTAACAATTCACTGACATT
Found at i:16212278 original size:12 final size:12
Alignment explanation
Indices: 16212261--16212292 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16212251 AAAATCTCGC
*
16212261 AAAACAGACTAG
1 AAAACAAACTAG
16212273 AAAACAAACTAG
1 AAAACAAACTAG
16212285 AAAACAAA
1 AAAACAAA
16212293 ACCCAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.16, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAACAAACTAG
Found at i:16214104 original size:448 final size:450
Alignment explanation
Indices: 16213267--16214160 Score: 1432
Period size: 448 Copynumber: 2.0 Consensus size: 450
16213257 ATTGCTTCCA
*
16213267 TAATTGCCAAAATTAAATTATGAAACAACACCGTTTTAAGAACCTTAAATATATATTTGTGGCGT
1 TAATTGCCAAAATTAAATTATGAAACAACACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
* * *
16213332 TTTTAGCAAAAATGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTT
66 TTTTA-CAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTT
* *
16213397 AATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAATAGT
130 AATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGT
*
16213462 GACGTTTTGAAAAACATTAATACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
195 GACGTTTTGAAAAACATTAATACATAATTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTAC
* * * *
16213527 ACTCCTCTTCTGAAACAGTGTCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
260 ACTACTCTTCTGAAACAGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAA
* * * **
16213592 AATGCCACAAATTAAATTAAATTTCTAAATGGGTACAACGCCGTTTTGAAAAAAATGGGTACATA
325 AACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATA
16213657 GTTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTT-TTCCTTATAATGTGGTCCTGCG
390 GTTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTCCTTATAATGTGGTCCTGCG
* ** *
16213717 TAATTGCCAAAATTAAATTCTGAAACAGTACCGTTTTAAGAACCTTCAATATATAGTTGTGGCGT
1 TAATTGCCAAAATTAAATTATGAAACAACACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
16213782 TTTTA-AAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
66 TTTTACAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
* * ** ** *
16213846 ATTCATATTTTTGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAGTCCTGAAGTGAAACAGTG
131 ATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGTG
** *
16213911 ACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAACGCCACTAGTAGATTACA
196 ACGTTTTGAAAAACATTAATACATAATTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTACA
* * * *
16213976 CTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTTGTGGCATTTTCCCATAAA
261 CTACTCTTCTGAAACAGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAAA
* *
16214041 ACGCCACAAATTAAATTAAATTTCTAAATGGATACGATGCCATTTCCAAAAAAATGGGTACATAG
326 ACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATAG
*
16214106 TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTTCTTATAATGTGGTC
391 TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTCCTTATAATGTGGTC
16214161 TTAAATATCA
Statistics
Matches: 406, Mismatches: 37, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
448 325 0.80
449 16 0.04
450 65 0.16
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (450 bp):
TAATTGCCAAAATTAAATTATGAAACAACACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
TTTTACAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
ATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGTG
ACGTTTTGAAAAACATTAATACATAATTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTACA
CTACTCTTCTGAAACAGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAAA
ACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATAG
TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTCCTTATAATGTGGTCCTGCG
Found at i:16214497 original size:7 final size:7
Alignment explanation
Indices: 16214474--16214511 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
16214464 ATATAATTCT
16214474 TAACCCC
1 TAACCCC
**
16214481 TAACGTC
1 TAACCCC
16214488 TAACCCC
1 TAACCCC
16214495 TAACCCC
1 TAACCCC
16214502 TAACCCC
1 TAACCCC
16214509 TAA
1 TAA
16214512 ACCTTGAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.32, C:0.47, G:0.03, T:0.18
Consensus pattern (7 bp):
TAACCCC
Done.