Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 58 of 182
Found at i:17801922 original size:11 final size:11
Alignment explanation
Indices: 17801906--17801944 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
17801896 TATATAAATA
17801906 TATAAATTAAT
1 TATAAATTAAT
*
17801917 TATAAAGTATAT
1 TATAAATTA-AT
17801929 TATTAAATTAAT
1 TA-TAAATTAAT
17801941 TATA
1 TATA
17801945 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:17801956 original size:14 final size:17
Alignment explanation
Indices: 17801924--17801961 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
17801914 AATTATAAAG
17801924 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
17801941 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
17801955 TATATTA
1 TATATTA
17801962 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:17802208 original size:5 final size:6
Alignment explanation
Indices: 17802191--17802215 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
17802181 AGGGGAAAGG
17802191 AGAAAA AGAAAA AGAAAA AGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA A
17802216 CTAGAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:17803097 original size:21 final size:22
Alignment explanation
Indices: 17803069--17803132 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
17803059 GCTTTGCCGA
17803069 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
*
17803091 T-AGGCACCA-AGTGTGTCGT-T
1 TCAGGCACTATA-TGTGTCGTAT
* *
17803111 TCAGGCACTTTATGTGTTGTAT
1 TCAGGCACTATATGTGTCGTAT
17803133 ACTGCTTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 3 0.09
21 28 0.82
22 3 0.09
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (22 bp):
TCAGGCACTATATGTGTCGTAT
Found at i:17805384 original size:25 final size:26
Alignment explanation
Indices: 17805335--17805384 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
17805325 CTTTTTCTTT
* * *
17805335 TCTTTTCATTTTTAGATTTGGTTTTC
1 TCTTTTCATTTTTAGAATAGATTTTC
17805361 TCTTTTCA-TTTTAGAATAGATTTT
1 TCTTTTCATTTTTAGAATAGATTTT
17805385 ATTTTTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAATAGATTTTC
Found at i:17821431 original size:3 final size:3
Alignment explanation
Indices: 17821425--17821546 Score: 244
Period size: 3 Copynumber: 40.7 Consensus size: 3
17821415 AGGTATAGAC
17821425 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
17821473 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
17821521 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
17821547 AGATTTGAGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 119 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:17822024 original size:21 final size:21
Alignment explanation
Indices: 17821983--17822044 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 21
17821973 ATTTAGTCAT
* *
17821983 ATAATA-AA-TTATTAATATA
1 ATAATATAATTTATTATTTTA
17822002 ATAATATAATTTATTATTTTA
1 ATAATATAATTTATTATTTTA
*
17822023 ATAA-ACT-ATTTAATATTTTA
1 ATAATA-TAATTTATTATTTTA
17822043 AT
1 AT
17822045 TTTATTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.16
20 17 0.46
21 14 0.38
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATATAATTTATTATTTTA
Found at i:17822600 original size:16 final size:16
Alignment explanation
Indices: 17822581--17822634 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
17822571 GCTGTAATAA
17822581 AATAGAGTTATAATGG
1 AATAGAGTTATAATGG
17822597 AATAGAGTTGA-AATGG
1 AATAGAGTT-ATAATGG
**
17822613 AATAGAACTATAATGG
1 AATAGAGTTATAATGG
17822629 AATAGA
1 AATAGA
17822635 ACTGTAATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 32 0.94
17 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (16 bp):
AATAGAGTTATAATGG
Found at i:17822635 original size:16 final size:16
Alignment explanation
Indices: 17822589--17822642 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
17822579 AAAATAGAGT
**
17822589 TATAATGGAATAGAGT
1 TATAATGGAATAGAAC
17822605 TGA-AATGGAATAGAAC
1 T-ATAATGGAATAGAAC
17822621 TATAATGGAATAGAAC
1 TATAATGGAATAGAAC
*
17822637 TGTAAT
1 TATAAT
17822643 CAGTAATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 1 0.03
16 31 0.94
17 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.22, T:0.28
Consensus pattern (16 bp):
TATAATGGAATAGAAC
Found at i:17822851 original size:43 final size:45
Alignment explanation
Indices: 17822798--17822881 Score: 111
Period size: 43 Copynumber: 1.9 Consensus size: 45
17822788 AATTATTGTT
* *
17822798 ATTAAATTTTACTA-AGATTATTATTAAA-ATAA-TAAATAATTTA
1 ATTAAATTTTAATATA-ATTATTACTAAATATAATTAAATAATTTA
*
17822841 ATTATATTTTAATATAATTATTACTAAATATAATTAAATAA
1 ATTAAATTTTAATATAATTATTACTAAATATAATTAAATAA
17822882 AAATAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 23 0.66
44 5 0.14
45 7 0.20
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (45 bp):
ATTAAATTTTAATATAATTATTACTAAATATAATTAAATAATTTA
Found at i:17838261 original size:24 final size:27
Alignment explanation
Indices: 17838225--17838277 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 27
17838215 TTTCACACAC
17838225 TTTTATTAGATTTTTT-AGGGTTAGGG
1 TTTTATTAGATTTTTTAAGGGTTAGGG
17838251 TTTT-TTA-ATTTTTTAAGGGTTAGGG
1 TTTTATTAGATTTTTTAAGGGTTAGGG
17838276 TT
1 TT
17838278 AAAGTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 7 0.27
25 15 0.58
26 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.57
Consensus pattern (27 bp):
TTTTATTAGATTTTTTAAGGGTTAGGG
Found at i:17849991 original size:12 final size:12
Alignment explanation
Indices: 17849971--17850013 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
17849961 CAAGAATAAA
17849971 TAAAAAATATAT
1 TAAAAAATATAT
*
17849983 TATAAAATATGA-
1 TAAAAAATAT-AT
17849995 TAAAAAATATA-
1 TAAAAAATATAT
17850006 TAAAAAAT
1 TAAAAAAT
17850014 TAGTCAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 9 0.32
12 18 0.64
13 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (12 bp):
TAAAAAATATAT
Found at i:17850170 original size:103 final size:103
Alignment explanation
Indices: 17850055--17850356 Score: 532
Period size: 103 Copynumber: 2.9 Consensus size: 103
17850045 TAAAAATGAC
* * ** * *
17850055 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGGCACCAATAAAATAGTGCCACAT
1 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
* *
17850120 CATTAAATTTTAAAGGTAACAAAGTATTATTATACGAG
66 CAGTAAATTTTAAAGATAACAAAGTATTATTATACGAG
17850158 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
1 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
17850223 CAGTAAATTTTAAAGATAACAAAGTATTATTATACGAG
66 CAGTAAATTTTAAAGATAACAAAGTATTATTATACGAG
17850261 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
1 AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
17850326 CAGTAAATTTTAAAGATAACAAAGTATTATT
66 CAGTAAATTTTAAAGATAACAAAGTATTATT
17850357 GTACACCCAT
Statistics
Matches: 191, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 191 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (103 bp):
AATAACTTATATTAGGATCATCCTAAAAAACATAATTTTTAGACACTAATAAAATAAAGTCGCAT
CAGTAAATTTTAAAGATAACAAAGTATTATTATACGAG
Found at i:17854842 original size:33 final size:33
Alignment explanation
Indices: 17854800--17854866 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
17854790 TCAACTTAAG
* *
17854800 CTCTTTTGTCTTCTTAAATTTCACTCCATAATT
1 CTCTTTTGTCTTCTCAAAATTCACTCCATAATT
17854833 CTCTTTTGTCTTCTCAAAATTCACTCCATAATT
1 CTCTTTTGTCTTCTCAAAATTCACTCCATAATT
17854866 C
1 C
17854867 AAAGTCCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.48
Consensus pattern (33 bp):
CTCTTTTGTCTTCTCAAAATTCACTCCATAATT
Found at i:17863194 original size:79 final size:78
Alignment explanation
Indices: 17863071--17863217 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 78
17863061 TTATTTTTGC
* * *
17863071 TATCTTATTATTATATTAATTAATTTAACATTATTATTACTATTATTATTTTCCTTTTTAT-TT-
1 TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTA-TA-TTT-CTTTTTATATTG
17863134 ATTTACTTGTTATTAT
63 ATTTACTTGTTATTAT
* * ** *
17863150 TATCATATTATTAAATTAGTTAGTTTTGCATAATTATTTCTATTATATTTCTTTTTATATTGATT
1 TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTATATTTCTTTTTATATTGATT
17863215 TAC
66 TAC
17863218 CTAATATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
76 8 0.14
77 5 0.09
78 8 0.14
79 37 0.64
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.60
Consensus pattern (78 bp):
TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTATATTTCTTTTTATATTGATT
TACTTGTTATTAT
Found at i:17863326 original size:3 final size:3
Alignment explanation
Indices: 17863299--17863363 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
17863289 CAAACCTTAG
* * * *
17863299 ATT ATT CATT ATTT ATT ATT TTT ATT ATC ATT CA-T ATT ATT CTC ATT
1 ATT ATT -ATT A-TT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
*
17863346 ATT ATT AGT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
17863364 TTGAAAACTC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
2 1 0.02
3 40 0.83
4 7 0.15
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:17865903 original size:37 final size:37
Alignment explanation
Indices: 17865853--17865929 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
17865843 CAGATGGCGT
17865853 TGGCACCGAGATGAGAGGTCCAATGTAAGACCATGTC
1 TGGCACCGAGATGAGAGGTCCAATGTAAGACCATGTC
* *
17865890 TGGCACCGAGATGAGAGGTCCCATGTAAGACTATGTC
1 TGGCACCGAGATGAGAGGTCCAATGTAAGACCATGTC
17865927 TGG
1 TGG
17865930 GACATGGCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (37 bp):
TGGCACCGAGATGAGAGGTCCAATGTAAGACCATGTC
Found at i:17865949 original size:50 final size:50
Alignment explanation
Indices: 17865890--17866045 Score: 204
Period size: 50 Copynumber: 3.1 Consensus size: 50
17865880 AGACCATGTC
* *
17865890 TGGCACCGAGATGAGAGGTCCCATGTAAGACTATGTCTGGGACATGGCGT
1 TGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
**
17865940 TGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT
1 TGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
* * * ** * *
17865990 GGGCACCAATATGAGAATATCCCATGTAAGACCATGTTTGGGACATGGCTT
1 TGGCACCGAGATGAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
17866041 TGGCA
1 TGGCA
17866046 TGTTATGATC
Statistics
Matches: 91, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 58 0.64
51 33 0.36
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
TGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
Found at i:17865959 original size:87 final size:85
Alignment explanation
Indices: 17865815--17865979 Score: 258
Period size: 87 Copynumber: 1.9 Consensus size: 85
17865805 CCTTGAGGTC
* *
17865815 ATGAGAGGTCCCATGTAAGACCATGTCTCAGATGGCGTTGGCACCGAGATGAGAGGTCCAATGTA
1 ATGAGAGGTCCCATGTAAGACCATGTCTCACATGGCGTTGGCACCGAGATGAGAGGTCCAACGTA
17865880 AGACCATGTCTGGCACCGAG
66 AGACCATGTCTGGCACCGAG
* * **
17865900 ATGAGAGGTCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCG
1 ATGAGAGGTCCCATGTAAGACCATGTCT--CACATGGCGTTGGCACCGAGATGAGAGGTCCAACG
17865965 TAAGACCATGTCTGG
64 TAAGACCATGTCTGG
17865980 GACATGGCAT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
85 27 0.38
87 45 0.62
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (85 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTCACATGGCGTTGGCACCGAGATGAGAGGTCCAACGTA
AGACCATGTCTGGCACCGAG
Found at i:17878058 original size:44 final size:44
Alignment explanation
Indices: 17877993--17878564 Score: 370
Period size: 44 Copynumber: 12.9 Consensus size: 44
17877983 CATTATGACG
*
17877993 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGTTACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTACA
* * * *
17878037 AGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGACT-AAATATAGCA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGT-TA-CA
* * *
17878082 AATCTTATCT-TCCTG-AGATTACAGTGGAGCAGATTGAAGATACG
1 AATCTTATCTCT-CTGAAG-TTGCAGTGGAGCAGATTGAAGTTACA
* * ** * *
17878126 AACCTCATCTC-CTTGAAGTTATAGCGGAGTAGATTGAAGTTACA
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * * *
17878170 AGTTTTATCTCCCTGAAGTTGCAGTAGAGCAAATTGAAGATAGTA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* ** * * **
17878215 AATCTTATCTCTCTGAGGCCGCAGCGGAGTAGATTGAAGACACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* **
17878259 AATCTCATCTC-CTTGAAGTTGCAGCAGAGCAGATTGAAGTTACA
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * **
17878303 AGTCTTATCTC-CTCGAAGTTGTAGTGGAGCAGCCTGAAGGTTACA
1 AATCTTATCTCTCT-GAAGTTGCAGTGGAGCAGATTGAA-GTTACA
* * * ** * ** *
17878348 AATATTGTCTCCCTGAAGTTTTAGTGGGGTGGATTGAAGTTATA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * * *
17878392 GATATTATCT-TCTGAAGTTGCAGTGGAGTAGATCGGAGATAGTA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * * *
17878436 AATCTTATCTCTCCGAAGTTGCAGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * *
17878480 AACCTTATCTCGT-TGAAGTTGTAGTGGAGCAGGTTGAAAATAAACA
1 AATCTTATCTC-TCTGAAGTTGCAGTGGAGCAGATTG-AAGT-TACA
* * * *
17878526 AATCTTATTTCCCTAAAGTTGCAGTGGAGTAGATTGAAG
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG
17878565 ATAAGCTCCA
Statistics
Matches: 402, Mismatches: 105, Indels: 41
0.73 0.19 0.07
Matches are distributed among these distances:
43 29 0.07
44 212 0.53
45 127 0.32
46 34 0.08
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
Found at i:17878341 original size:133 final size:134
Alignment explanation
Indices: 17877993--17878341 Score: 420
Period size: 133 Copynumber: 2.6 Consensus size: 134
17877983 CATTATGACG
* * *
17877993 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGTTACAAGTCTTATCT-CTCTGAAGT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGA-TTGAAGTTACAAGTCTTATCTCCTCTGAAGT
* * ** *
17878056 TGCAGTAGAGCAGACTAAATATAGCAAATCTTATCTTCCTGAGATTACAGTGGAGCAGATTGAAG
65 TGCAGTAGAGCAGACTGAAGATAGCAAATCTTATCTTCCTGAGACCACAGCGGAGCAGATTGAAG
* *
17878121 ATACG
130 ACACA
* ** * *
17878126 AACCTCATCTCCTTGAAGTTATAGCGGAGTAGATTGAAGTTACAAGTTTTATCTCC-CTGAAGTT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
* * * * * *
17878190 GCAGTAGAGCAAATTGAAGATAGTAAATCTTATC-TCTCTGAGGCCGCAGCGGAGTAGATTGAAG
66 GCAGTAGAGCAGACTGAAGATAGCAAATCTTATCTTC-CTGAGACCACAGCGGAGCAGATTGAAG
17878254 ACACA
130 ACACA
*
17878259 AATCTCATCTCCTTGAAGTTGCAGCAGAGCAGATTGAAGTTACAAGTCTTATCTCCTC-GAAGTT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
* * *
17878323 GTAGTGGAGCAGCCTGAAG
66 GCAGTAGAGCAGACTGAAG
17878342 GTTACAAATA
Statistics
Matches: 180, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
132 2 0.01
133 175 0.97
134 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (134 bp):
AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
GCAGTAGAGCAGACTGAAGATAGCAAATCTTATCTTCCTGAGACCACAGCGGAGCAGATTGAAGA
CACA
Found at i:17878349 original size:89 final size:88
Alignment explanation
Indices: 17877993--17878567 Score: 353
Period size: 89 Copynumber: 6.5 Consensus size: 88
17877983 CATTATGACG
* *
17877993 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGTTACAAGTCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TTGAAGATACAAGTCTTATCTCTCTGAAGTT
** *
17878057 GCAGTAGAGCAGACT-AAATATAGCA
65 GCAGCGGAGCAGACTGAAGT-TA-CA
* * * * *
17878082 AATCTTATCTTCCTG-AGATTACAGTGGAGCAGATTGAAGATACGAA-CCTCATCTC-CTTGAAG
1 AATCTTATCTCCCTGAAG-TTGCAGTAGAGCAGATTGAAGATAC-AAGTCTTATCTCTC-TGAAG
** * *
17878144 TTATAGCGGAGTAGATTGAAGTTACA
63 TTGCAGCGGAGCAGACTGAAGTTACA
* * * * * * **
17878170 AGTTTTATCTCCCTGAAGTTGCAGTAGAGCAAATTGAAGATAGTAAATCTTATCTCTCTGAGGCC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAGTCTTATCTCTCTGAAGTT
* * **
17878235 GCAGCGGAGTAGATTGAAGACACA
65 GCAGCGGAGCAGACTGAAGTTACA
* * * *
17878259 AATCTCATCTCCTTGAAGTTGCAGCAGAGCAGATTGAAGTTACAAGTCTTATCTC-CTCGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAGTCTTATCTCTCT-GAAGTT
* * *
17878323 GTAGTGGAGCAGCCTGAAGGTTACA
65 GCAGCGGAGCAGACTGAA-GTTACA
* * ** * * ** * * *
17878348 AATATTGTCTCCCTGAAGTTTTAGTGGGGTGGATTGAAGTTA-TAGATATTATCT-TCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAG-TCTTATCTCTCTGAAGTT
* * * * *
17878411 GCAGTGGAGTAGA-TCGGAGATAGTA
65 GCAGCGGAGCAGACT-GAAGTTA-CA
* * * **
17878436 AATCTTATCTCTCC-GAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCGT-TGAAGT
1 AATCTTATCTC-CCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAGTCTTATCTC-TCTGAAGT
* * ** * *
17878499 TGTAGTGGAGCAGGTTGAAAATAAACA
64 TGCAGCGGAGCAGACTG-AAGT-TACA
* * * *
17878526 AATCTTATTTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA
17878568 AGCTCCAAAT
Statistics
Matches: 369, Mismatches: 94, Indels: 45
0.73 0.19 0.09
Matches are distributed among these distances:
87 6 0.02
88 123 0.33
89 195 0.53
90 44 0.12
91 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAGTCTTATCTCTCTGAAGTTG
CAGCGGAGCAGACTGAAGTTACA
Found at i:17878383 original size:133 final size:134
Alignment explanation
Indices: 17877993--17878468 Score: 412
Period size: 133 Copynumber: 3.6 Consensus size: 134
17877983 CATTATGACG
* * *
17877993 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGTTACAAGTCTTATCT-CTCTGAAGT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGA-TTGAAGTTACAAGTCTTATCTCCTCTGAAGT
* * *
17878056 TGCAGTAGAGCAGACT-AAATATAGCAAATCTTATCTTCCTG-AGATTACAGTGGAGCAGATTGA
65 TGCAGTAGAGCAGACTGAAGT-TAGCAAATCTTATCTCCCTGAAG-TTACAGTGGAGTAGATTGA
* *
17878119 AGATACG
128 AGACACA
* ** * *
17878126 AACCTCATCTCCTTGAAGTTATAGCGGAGTAGATTGAAGTTACAAGTTTTATCTCC-CTGAAGTT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
* * * * * * *** *
17878190 GCAGTAGAGCAAATTGAAGATAGTAAATCTTATCTCTCTGAGGCCGCAGCGGAGTAGATTGAAGA
66 GCAGTAGAGCAGACTGAAGTTAGCAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGA
17878255 CACA
131 CACA
*
17878259 AATCTCATCTCCTTGAAGTTGCAGCAGAGCAGATTGAAGTTACAAGTCTTATCTCCTC-GAAGTT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
* * * * * ** * *
17878323 GTAGTGGAGCAGCCTGAAGGTTA-CAAATATTGTCTCCCTGAAGTTTTAGTGGGGTGGATTGAAG
66 GCAGTAGAGCAGACTGAA-GTTAGCAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAG
** *
17878387 TTATA
130 ACACA
* * * * * * * * * * * *
17878392 GATATTATCTTC-TGAAGTTGCAGTGGAGTAGATCGGAGATAGTAAATCTTATCT-CTCCGAAGT
1 AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTA-CAAGTCTTATCTCCTCTGAAGT
17878455 TGCAGTAGAGCAGA
65 TGCAGTAGAGCAGA
17878469 TTAAAGCTAT
Statistics
Matches: 270, Mismatches: 65, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
132 26 0.10
133 235 0.87
134 9 0.03
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (134 bp):
AATCTCATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGTTACAAGTCTTATCTCCTCTGAAGTT
GCAGTAGAGCAGACTGAAGTTAGCAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGA
CACA
Found at i:17878545 original size:46 final size:47
Alignment explanation
Indices: 17878495--17878613 Score: 125
Period size: 49 Copynumber: 2.5 Consensus size: 47
17878485 TATCTCGTTG
*
17878495 AAGTTGTAGTGGAGCAGGTTGAAAATAA-ACAAATCTTATTTCCCTA
1 AAGTTGTAGTGGAGCAGGTTGAAAATAACACAAATCTTATCTCCCTA
* * * * * * *
17878541 AAGTTGCAGTGGAGTAGATTGAAGATAAGCTCCAAATCTTATCTCCTTG
1 AAGTTGTAGTGGAGCAGGTTGAAAATAA-C-ACAAATCTTATCTCCCTA
*
17878590 AAGTTGTAATGGAGCAGGTT-AAAA
1 AAGTTGTAGTGGAGCAGGTTGAAAA
17878614 GCTGCAAACC
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
46 24 0.42
48 3 0.05
49 30 0.53
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (47 bp):
AAGTTGTAGTGGAGCAGGTTGAAAATAACACAAATCTTATCTCCCTA
Found at i:17878824 original size:44 final size:44
Alignment explanation
Indices: 17878771--17878910 Score: 131
Period size: 44 Copynumber: 3.2 Consensus size: 44
17878761 AATTTCATCT
* * *
17878771 CCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATAAGTCTTATCA
1 CCCTGAAGTTGCAGCGGAACAGATCGAAGCTACAAGTCTTATCA
* * * ** *
17878815 CCCTTAAGTTACAGTGGAATGGATCGAAGCTACAAGTCTTATCT
1 CCCTGAAGTTGCAGCGGAACAGATCGAAGCTACAAGTCTTATCA
* * * *
17878859 CCCTGAAGTTGCAGTGGATTCA-ATCGAAGCGACAATTCTTAT-A
1 CCCTGAAGTTGCAGCGGA-ACAGATCGAAGCTACAAGTCTTATCA
17878902 CCCCTGAAG
1 -CCCTGAAG
17878911 ATACAGTGAG
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
44 77 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
CCCTGAAGTTGCAGCGGAACAGATCGAAGCTACAAGTCTTATCA
Found at i:17880308 original size:79 final size:78
Alignment explanation
Indices: 17880185--17880331 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 78
17880175 TTATTTTTGC
* * *
17880185 TATCTTATTATTATATTAATTAATTTAACATTATTATTACTATTATTATTTTCCTTTTTAT-TT-
1 TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTA-TA-TTT-CTTTTTATATTG
17880248 ATTTACTTGTTATTAT
63 ATTTACTTGTTATTAT
* * ** *
17880264 TATCATATTATTAAATTAGTTAGTTTTGCATAATTATTTCTATTATATTTCTTTTTATATTGATT
1 TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTATATTTCTTTTTATATTGATT
17880329 TAC
66 TAC
17880332 CTAATATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
76 8 0.14
77 5 0.09
78 8 0.14
79 37 0.64
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.60
Consensus pattern (78 bp):
TATCATATTATTAAATTAATTAATTTAACATAATTATTACTATTATATTTCTTTTTATATTGATT
TACTTGTTATTAT
Found at i:17880453 original size:3 final size:3
Alignment explanation
Indices: 17880413--17880477 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
17880403 CAAGCCTTAG
* * * *
17880413 ATT ATT CATT ATT CATT ATT TTT ATT ATC ATT CA-T ATT ATT CTC ATT
1 ATT ATT -ATT ATT -ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
*
17880460 ATT ATT AGT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
17880478 TTGAAAACCC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
2 1 0.02
3 40 0.83
4 7 0.15
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:17882489 original size:20 final size:20
Alignment explanation
Indices: 17882442--17882489 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
17882432 GAGCTAGAGA
* *
17882442 TATCGATACTAAAGAAAAAT
1 TATCGATACCAAAGAAAAAG
* * *
17882462 TATTGATACCAAATAAAAGG
1 TATCGATACCAAAGAAAAAG
17882482 TATCGATA
1 TATCGATA
17882490 TTGGATTGAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.27
Consensus pattern (20 bp):
TATCGATACCAAAGAAAAAG
Found at i:17891153 original size:32 final size:32
Alignment explanation
Indices: 17891116--17891176 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
17891106 ATTTAGCTTT
*
17891116 AACTTTCAAATTTTAATTAAATTATTTTAGCC
1 AACTTTCAAAATTTAATTAAATTATTTTAGCC
* *
17891148 AACTTTTAAAATTTAATTTAATTATTTTA
1 AACTTTCAAAATTTAATTAAATTATTTTA
17891177 TTTTGAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (32 bp):
AACTTTCAAAATTTAATTAAATTATTTTAGCC
Found at i:17891304 original size:21 final size:21
Alignment explanation
Indices: 17891278--17891349 Score: 85
Period size: 22 Copynumber: 3.5 Consensus size: 21
17891268 TAAATTTGTC
17891278 AAAATTTTAAATATTTTTATT
1 AAAATTTTAAATATTTTTATT
*
17891299 AAAATTTT-AA-ATTTTTATG
1 AAAATTTTAAATATTTTTATT
* * *
17891318 AAAAATATACATTATTTTTATT
1 AAAATTTTA-AATATTTTTATT
17891340 AAAATTTTAA
1 AAAATTTTAA
17891350 TAGTTGAGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 14 0.34
20 2 0.05
21 10 0.24
22 15 0.37
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (21 bp):
AAAATTTTAAATATTTTTATT
Found at i:17891322 original size:20 final size:21
Alignment explanation
Indices: 17891278--17891349 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
17891268 TAAATTTGTC
*
17891278 AAAATTTTAAATATTTTTATT
1 AAAATTTTAAATATTTTTATA
17891299 AAAATTTT-AA-ATTTTTATGA
1 AAAATTTTAAATATTTTTAT-A
* * *
17891319 AAAA-TATACATTATTTTTATT
1 AAAATTTTA-AATATTTTTATA
17891340 AAAATTTTAA
1 AAAATTTTAA
17891350 TAGTTGAGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
19 10 0.24
20 6 0.15
21 14 0.34
22 11 0.27
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (21 bp):
AAAATTTTAAATATTTTTATA
Found at i:17894986 original size:27 final size:26
Alignment explanation
Indices: 17894956--17895020 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
17894946 TATTGTATAT
17894956 TTAAATTTATAATGGTT-TAT-TTTAATA
1 TTAAATTTATAAT--TTATATATTTAA-A
*
17894983 TTAAA-ATATAATTTATATATTTAAA
1 TTAAATTTATAATTTATATATTTAAA
17895008 TTAAATTTCATAA
1 TTAAATTT-ATAA
17895021 ATACTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 2 0.06
25 9 0.28
26 12 0.38
27 9 0.28
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (26 bp):
TTAAATTTATAATTTATATATTTAAA
Found at i:17895178 original size:21 final size:18
Alignment explanation
Indices: 17895143--17895181 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
17895133 AAATTAAATA
17895143 TTATTTAAATACATATTT
1 TTATTTAAATACATATTT
17895161 TTATTGTACAATACCATATTT
1 TTATT-TA-AATA-CATATTT
17895182 AAAATAGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 2 0.11
20 4 0.22
21 7 0.39
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (18 bp):
TTATTTAAATACATATTT
Found at i:17896422 original size:31 final size:30
Alignment explanation
Indices: 17896380--17896437 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
17896370 TACACTAATG
* *
17896380 GTCACTCAACTTCGATTAAAATAACAAAATA
1 GTCACTAAACTT-GAGTAAAATAACAAAATA
*
17896411 GTCACTAAACTTTAGTAAAATAACAAA
1 GTCACTAAACTTGAGTAAAATAACAAA
17896438 CCAGTCACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.26
Consensus pattern (30 bp):
GTCACTAAACTTGAGTAAAATAACAAAATA
Found at i:17900192 original size:35 final size:35
Alignment explanation
Indices: 17900146--17900219 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
17900136 AATGGCAGAC
* * *
17900146 AATAACGAAAGAAATCTAAACCTGCCATACACTTT
1 AATAACCAAAGAAATCCAAACATGCCATACACTTT
* *
17900181 AATAACCAAAGAAATCCAAATATGTCATACACTTT
1 AATAACCAAAGAAATCCAAACATGCCATACACTTT
17900216 AATA
1 AATA
17900220 CAAACAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (35 bp):
AATAACCAAAGAAATCCAAACATGCCATACACTTT
Found at i:17909736 original size:20 final size:21
Alignment explanation
Indices: 17909713--17909751 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17909703 TGGACGAGCC
17909713 ACCAG-AAA-TGCAGATAAAAT
1 ACCAGTAAATTGC-GATAAAAT
17909733 ACCAGTAAATTGCGATAAA
1 ACCAGTAAATTGCGATAAA
17909752 CCGCCAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.18
Consensus pattern (21 bp):
ACCAGTAAATTGCGATAAAAT
Found at i:17911248 original size:51 final size:51
Alignment explanation
Indices: 17911189--17911532 Score: 324
Period size: 51 Copynumber: 6.8 Consensus size: 51
17911179 TATCGATGAA
* *
17911189 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
* * * * * * *
17911240 CACATGTGTAGTATTAAGTGAAGGCTA-TAATGTGTATCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACT-ACGTGAATCGATAA-ATGTTGGT
* * * * *
17911291 CACGTGTGTAGTACTGTGTGAAGACTACTATGTGAATCAATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
* * * * * *
17911342 CACATGTGTAATACTAAGTGAAGGCTACTATGTGTACCGA-AAA-GCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATG--TTGGT
* ** *
17911393 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAA-CTG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATC-GATAAATGTTGGT
* * ** *
17911443 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
*
17911493 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
17911533 ATGATAAAAG
Statistics
Matches: 241, Mismatches: 41, Indels: 22
0.79 0.13 0.07
Matches are distributed among these distances:
49 1 0.00
50 92 0.38
51 146 0.61
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
Found at i:17911365 original size:102 final size:102
Alignment explanation
Indices: 17911189--17911526 Score: 423
Period size: 102 Copynumber: 3.3 Consensus size: 102
17911179 TATCGATGAA
* * *
17911189 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAT
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
* *
17911254 TAAGTGAAGGCTA-TAATGTGTATCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACT-ATGTGTACCGAAAAGCTTTGGT
* *
17911291 CACGTGTGTAGTACTGTGTGAAGACTACTATGTGAATCAATAAATGATGGTCACATGTGTAATAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
17911356 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
* * ** *** * * * *
17911393 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAA-CTGTAAAACTTGATCACGTGTATAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
* * * *
17911457 TATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
*
17911493 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTG
17911527 TATCGAATGA
Statistics
Matches: 209, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
100 37 0.18
101 42 0.20
102 129 0.62
103 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
Found at i:17911769 original size:38 final size:37
Alignment explanation
Indices: 17911723--17911795 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
17911713 ATGTGTGGAA
*
17911723 TTGAATTGAATATTGACTTGAAAATGGAAAA-GTGAATT
1 TTGAATTGAATAGTGA-TTGAAAAT-GAAAATGTGAATT
*
17911761 TTGAATTGAATAGTGATTGAAAGTGAAAATGTGAA
1 TTGAATTGAATAGTGATTGAAAATGAAAATGTGAA
17911796 ATTACGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 5 0.16
37 12 0.38
38 15 0.47
ACGTcount: A:0.42, C:0.01, G:0.23, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTGAAAATGAAAATGTGAATT
Found at i:17918462 original size:3 final size:3
Alignment explanation
Indices: 17918423--17918449 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
17918413 AAACGGGAAA
17918423 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
17918450 GGTACTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:17933791 original size:10 final size:10
Alignment explanation
Indices: 17933772--17933819 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
17933762 AGTTGTATGT
*
17933772 ATTATGTCAA
1 ATTATATCAA
17933782 ATTATATCAA
1 ATTATATCAA
*
17933792 ATTATAATAAA
1 ATTAT-ATCAA
17933803 TATTATATCAA
1 -ATTATATCAA
17933814 ATTATA
1 ATTATA
17933820 ATGAAATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 20 0.61
11 8 0.24
12 5 0.15
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (10 bp):
ATTATATCAA
Found at i:17933810 original size:22 final size:23
Alignment explanation
Indices: 17933782--17933828 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
17933772 ATTATGTCAA
17933782 ATTATATCAAATTATAAT-AAAT
1 ATTATATCAAATTATAATGAAAT
17933804 ATTATATCAAATTATAATGAAAT
1 ATTATATCAAATTATAATGAAAT
17933827 AT
1 AT
17933829 AATAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
ATTATATCAAATTATAATGAAAT
Found at i:17933814 original size:32 final size:32
Alignment explanation
Indices: 17933771--17933836 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
17933761 AAGTTGTATG
*
17933771 TATTATGTCAAATTAT-ATCAAATTATAATAAA
1 TATTATATCAAATTATAATCAAA-TATAATAAA
*
17933803 TATTATATCAAATTATAATGAAATATAATAAA
1 TATTATATCAAATTATAATCAAATATAATAAA
17933835 TA
1 TA
17933837 AATAAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 26 0.84
33 5 0.16
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (32 bp):
TATTATATCAAATTATAATCAAATATAATAAA
Found at i:17946033 original size:35 final size:36
Alignment explanation
Indices: 17945975--17946043 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
17945965 AGTAAGGAAA
* *
17945975 ATGATGAAAATGTATGCGCTGATTAGGAAGGTATAG
1 ATGATGAAAATGTATACGCTGATTAGAAAGGTATAG
* *
17946011 ATGATG-AAATGTGTACGTTGATTAGAAAGGTAT
1 ATGATGAAAATGTATACGCTGATTAGAAAGGTAT
17946044 CTGCCAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 23 0.79
36 6 0.21
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.30
Consensus pattern (36 bp):
ATGATGAAAATGTATACGCTGATTAGAAAGGTATAG
Found at i:17949342 original size:20 final size:22
Alignment explanation
Indices: 17949302--17949350 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
17949292 TTATTTATAT
*
17949302 TAAATATTTTTAATATAAATAA
1 TAAAAATTTTTAATATAAATAA
*
17949324 TATAAATTTTT-AT-TAAATAA
1 TAAAAATTTTTAATATAAATAA
17949344 TAAAAAT
1 TAAAAAT
17949351 ATAAATATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 13 0.54
21 2 0.08
22 9 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAAAATTTTTAATATAAATAA
Found at i:17950409 original size:23 final size:23
Alignment explanation
Indices: 17950374--17950417 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
17950364 ATTTCAGATC
*
17950374 AATAAAAATTTTATTATTTTAAAA
1 AATAAAAATTTTAAT-TTTTAAAA
17950398 AATAAAAA-TTTAATTTTTAA
1 AATAAAAATTTTAATTTTTAA
17950418 TGTCAACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 5 0.26
24 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATAAAAATTTTAATTTTTAAAA
Found at i:17950751 original size:28 final size:29
Alignment explanation
Indices: 17950719--17950820 Score: 102
Period size: 28 Copynumber: 3.5 Consensus size: 29
17950709 AATTACCTGT
*
17950719 AAAATTTATTATATATAAAAT-AT-TTTAA
1 AAAATTTAATATA-ATAAAATAATATTTAA
*
17950747 AAAATTAAATATAAT-AAATAATATTTAA
1 AAAATTTAATATAATAAAATAATATTTAA
* * *
17950775 ATAATTTAATATAATGATAAATGATGTTTAA
1 AAAATTTAATATAAT-A-AAATAATATTTAA
*
17950806 ATAATTTAATATAAT
1 AAAATTTAATATAAT
17950821 GATACATGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.06
27 4 0.06
28 29 0.46
31 26 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (29 bp):
AAAATTTAATATAATAAAATAATATTTAA
Found at i:17950805 original size:31 final size:31
Alignment explanation
Indices: 17950760--17950829 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
17950750 ATTAAATATA
*
17950760 ATAAATAATATTTAAATAATTTAATATAATG
1 ATAAATGATATTTAAATAATTTAATATAATG
*
17950791 ATAAATGATGTTTAAATAATTTAATATAATG
1 ATAAATGATATTTAAATAATTTAATATAATG
*
17950822 ATACATGA
1 ATAAATGA
17950830 AACATAAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.40
Consensus pattern (31 bp):
ATAAATGATATTTAAATAATTTAATATAATG
Found at i:17950815 original size:158 final size:157
Alignment explanation
Indices: 17950637--17950950 Score: 538
Period size: 158 Copynumber: 2.0 Consensus size: 157
17950627 GTTAAATTAC
* *
17950637 ATGATATTTAAATAATTTAATATAATGATACATGAAAAATAAATCTTAAATGTATTTTAAGTAAT
1 ATGATATTTAAATAATTTAATATAATGATACATGAAAAATAAATCTTAAATGCATTTTAAATAAT
*
17950702 TAATATAAATTACCTGTAAAATTTATTATATATAAAATATTTTAAAAAATTAAATATAATAAATA
66 TAATATAAATTACCAGTAAAATTTATTATATATAAAATATTTT-AAAAATTAAATATAATAAATA
* *
17950767 ATATTTAAATAATTTAATATAATGATAA
130 AGATTTAAATAATTAAATATAATGATAA
* *
17950795 ATGATGTTTAAATAATTTAATATAATGATACATGAAACATAAATCTTAAATGCATTTTAAATAAT
1 ATGATATTTAAATAATTTAATATAATGATACATGAAAAATAAATCTTAAATGCATTTTAAATAAT
*
17950860 TAATATAAATTACCAGTAAAATTTATTATATATAAAATATTTTTAAAATTAAATATAATAAATAA
66 TAATATAAATTACCAGTAAAATTTATTATATATAAAATATTTTAAAAATTAAATATAATAAATAA
*
17950925 GATTTATATAATTAAATATAATGATA
131 GATTTAAATAATTAAATATAATGATA
17950951 TTTCAAATTT
Statistics
Matches: 147, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
157 44 0.30
158 103 0.70
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (157 bp):
ATGATATTTAAATAATTTAATATAATGATACATGAAAAATAAATCTTAAATGCATTTTAAATAAT
TAATATAAATTACCAGTAAAATTTATTATATATAAAATATTTTAAAAATTAAATATAATAAATAA
GATTTAAATAATTAAATATAATGATAA
Found at i:17950838 original size:31 final size:31
Alignment explanation
Indices: 17950772--17950838 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
17950762 AAATAATATT
****
17950772 TAAATAATTTAATATAATGATAAATGATGTT
1 TAAATAATTTAATATAATGATAAATGAAACA
*
17950803 TAAATAATTTAATATAATGATACATGAAACA
1 TAAATAATTTAATATAATGATAAATGAAACA
17950834 TAAAT
1 TAAAT
17950839 CTTAAATGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.37
Consensus pattern (31 bp):
TAAATAATTTAATATAATGATAAATGAAACA
Found at i:17950915 original size:25 final size:27
Alignment explanation
Indices: 17950876--17950944 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 27
17950866 AAATTACCAG
* * * *
17950876 TAAAATTTATTATATATAA-AATATTTT
1 TAAAATTAAATATATA-AATAAGATTTA
17950903 TAAAATTAAATATAATAAATAAGATTTA
1 TAAAATTAAATAT-ATAAATAAGATTTA
*
17950931 TATAATTAAATATA
1 TAAAATTAAATATA
17950945 ATGATATTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (27 bp):
TAAAATTAAATATATAAATAAGATTTA
Found at i:17954629 original size:20 final size:21
Alignment explanation
Indices: 17954606--17954644 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17954596 TGGACGAGCC
17954606 ACCAG-AAA-TGCAGATAAAAT
1 ACCAGTAAATTGC-GATAAAAT
17954626 ACCAGTAAATTGCGATAAA
1 ACCAGTAAATTGCGATAAA
17954645 CCGCCAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.18
Consensus pattern (21 bp):
ACCAGTAAATTGCGATAAAAT
Found at i:17956140 original size:51 final size:51
Alignment explanation
Indices: 17956081--17956424 Score: 324
Period size: 51 Copynumber: 6.8 Consensus size: 51
17956071 TATCGATGAA
* *
17956081 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
* * * * * * *
17956132 CACATGTGTAGTATTAAGTGAAGGCTA-TAATGTGTATCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACT-ACGTGAATCGATAA-ATGTTGGT
* * * * *
17956183 CACGTGTGTAGTACTGTGTGAAGACTACTATGTGAATCAATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
* * * * * *
17956234 CACATGTGTAATACTAAGTGAAGGCTACTATGTGTACCGA-AAA-GCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATG--TTGGT
* ** *
17956285 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAA-CTG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATC-GATAAATGTTGGT
* * ** *
17956335 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
*
17956385 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
17956425 ATGATAAAAG
Statistics
Matches: 241, Mismatches: 41, Indels: 22
0.79 0.13 0.07
Matches are distributed among these distances:
49 1 0.00
50 92 0.38
51 146 0.61
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGTTGGT
Found at i:17956257 original size:102 final size:102
Alignment explanation
Indices: 17956081--17956418 Score: 423
Period size: 102 Copynumber: 3.3 Consensus size: 102
17956071 TATCGATGAA
* * *
17956081 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAT
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
* *
17956146 TAAGTGAAGGCTA-TAATGTGTATCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACT-ATGTGTACCGAAAAGCTTTGGT
* *
17956183 CACGTGTGTAGTACTGTGTGAAGACTACTATGTGAATCAATAAATGATGGTCACATGTGTAATAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
17956248 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
* * ** *** * * * *
17956285 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAA-CTGTAAAACTTGATCACGTGTATAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
* * * *
17956349 TATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
*
17956385 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTG
17956419 TATCGAATGA
Statistics
Matches: 209, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
100 37 0.18
101 42 0.20
102 129 0.62
103 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAATAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
Found at i:17956661 original size:38 final size:37
Alignment explanation
Indices: 17956615--17956687 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
17956605 ATGTGTGGAA
*
17956615 TTGAATTGAATATTGACTTGAAAATGGAAAA-GTGAATT
1 TTGAATTGAATAGTGA-TTGAAAAT-GAAAATGTGAATT
*
17956653 TTGAATTGAATAGTGATTGAAAGTGAAAATGTGAA
1 TTGAATTGAATAGTGATTGAAAATGAAAATGTGAA
17956688 ATTACGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 5 0.16
37 12 0.38
38 15 0.47
ACGTcount: A:0.42, C:0.01, G:0.23, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTGAAAATGAAAATGTGAATT
Found at i:17961465 original size:51 final size:51
Alignment explanation
Indices: 17961373--17961560 Score: 227
Period size: 51 Copynumber: 3.7 Consensus size: 51
17961363 CATGAGAACT
* * * * *
17961373 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGTTCA
1 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAGGATAGTTATGGTCA
* * *
17961424 CATGTGTAGTACTAAGTGCAGGCTATTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAGGATAG-TTATGGTCA
* * * * *
17961475 CGTGTGTAGTACTATGTGTAGGCTTCTACGTGTACAGGAT-GGTATTGGTCA
1 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAGGATAGTTA-TGGTCA
17961526 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTAC
1 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTAC
17961561 CGAATAGCAT
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 110 0.96
52 2 0.02
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.35
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAGGATAGTTATGGTCA
Found at i:17961556 original size:102 final size:102
Alignment explanation
Indices: 17961375--17961568 Score: 282
Period size: 102 Copynumber: 1.9 Consensus size: 102
17961365 TGAGAACTCA
* * *
17961375 TGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGTTCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGTAGGCTACTACGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAG
* *
17961440 TGCAGGCTATTATGTGTACCGGATAGCTTTGGTCACG
66 TGCAGGCTACTATGTGTACCGAATAGCTTTGGTCACG
* * * *
17961477 TGTGTAGTACTATGTGTAGGCTTCTACGTGTACAGGAT-GGTATTGGTCACATGTGTAGTACTAA
1 TGTGTAGTACTATGTGTAGGCTACTACGAGTACAAGATAGTTA-TGGTCACATGTGTAGTACTAA
*
17961541 GTGTAGGCTACTATGTGTACCGAATAGC
65 GTGCAGGCTACTATGTGTACCGAATAGC
17961569 ATTGATCATA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 3 0.04
102 78 0.96
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (102 bp):
TGTGTAGTACTATGTGTAGGCTACTACGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGTGTACCGAATAGCTTTGGTCACG
Found at i:17965529 original size:27 final size:27
Alignment explanation
Indices: 17965498--17965552 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
17965488 TGTGTGTATG
*
17965498 TCAAAACCACTGTTGATGGATATGTAA
1 TCAAAACCACTGTTGATAGATATGTAA
17965525 TCAAAACCACTGTTGATAGATATGTAA
1 TCAAAACCACTGTTGATAGATATGTAA
17965552 T
1 T
17965553 TCTACATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (27 bp):
TCAAAACCACTGTTGATAGATATGTAA
Found at i:17969731 original size:26 final size:26
Alignment explanation
Indices: 17969695--17969744 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17969685 TTAATCGCCC
17969695 ATTTAAAAGTAGAATAGAATAAGACA
1 ATTTAAAAGTAGAATAGAATAAGACA
17969721 ATTTAAAAGTAGAATAGAATAAGA
1 ATTTAAAAGTAGAATAGAATAAGA
17969745 TAAGTGTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.02, G:0.16, T:0.24
Consensus pattern (26 bp):
ATTTAAAAGTAGAATAGAATAAGACA
Found at i:17977248 original size:19 final size:19
Alignment explanation
Indices: 17977221--17977268 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
17977211 CTCGGAGGGG
*
17977221 GCACGCGCGCAGAGGCGCA
1 GCACACGCGCAGAGGCGCA
**
17977240 GCACACGCGTGGAGGCGCA
1 GCACACGCGCAGAGGCGCA
17977259 G-A-ACGCGCAG
1 GCACACGCGCAG
17977269 GGGAGGACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 17 0.71
ACGTcount: A:0.23, C:0.33, G:0.42, T:0.02
Consensus pattern (19 bp):
GCACACGCGCAGAGGCGCA
Found at i:17979181 original size:31 final size:31
Alignment explanation
Indices: 17979145--17979206 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
17979135 TTTAATTTTG
17979145 ATTGCATACTTAGTTTCTTATTTACTTACAT
1 ATTGCATACTTAGTTTCTTATTTACTTACAT
17979176 ATTGCATACTTAGTTTCTTATTTACTTACAT
1 ATTGCATACTTAGTTTCTTATTTACTTACAT
17979207 TTATTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (31 bp):
ATTGCATACTTAGTTTCTTATTTACTTACAT
Found at i:17984455 original size:6 final size:6
Alignment explanation
Indices: 17984446--17984529 Score: 97
Period size: 6 Copynumber: 14.5 Consensus size: 6
17984436 TTTAATTTTA
17984446 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-T TTTA-T TTTA-T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
17984491 TTTA-T TTTATT TTTATG GTTACTT TTT-TAT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTA-TT TTTAT-T TTTATT TTT
17984530 CAGATTTATA
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
5 21 0.30
6 45 0.64
7 4 0.06
ACGTcount: A:0.17, C:0.01, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:17984499 original size:44 final size:45
Alignment explanation
Indices: 17984432--17984528 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 45
17984422 GATCAGTGAC
* **
17984432 TTTATTTAATTTTATTTATTTTTATTTTTATTTTTA--TTTTTATT
1 TTTATTTTATTTTATTTATTTTTATTTTTATGGTTACTTTTTTA-T
17984476 TTTATTTTATTTTATTT-TATTTTATTTTTATGGTTACTTTTTTAT
1 TTTATTTTATTTTATTTAT-TTTTATTTTTATGGTTACTTTTTTAT
17984521 TTTATTTT
1 TTTATTTT
17984529 TCAGATTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
43 1 0.02
44 31 0.66
45 9 0.19
46 6 0.13
ACGTcount: A:0.19, C:0.01, G:0.02, T:0.78
Consensus pattern (45 bp):
TTTATTTTATTTTATTTATTTTTATTTTTATGGTTACTTTTTTAT
Found at i:17984503 original size:10 final size:11
Alignment explanation
Indices: 17984440--17984555 Score: 103
Period size: 11 Copynumber: 9.9 Consensus size: 11
17984430 ACTTTATTTA
*
17984440 ATTTTATTTAT
1 ATTTTATTTTT
17984451 -TTTTATTTTT
1 ATTTTATTTTT
17984461 ATTTTTATTTTT
1 A-TTTTATTTTT
17984473 ATTTT-TATTTT
1 ATTTTAT-TTTT
17984484 ATTTTA-TTTT
1 ATTTTATTTTT
17984494 ATTTTATTTTT
1 ATTTTATTTTT
*
17984505 ATGGTTACTTTTTT
1 AT-TTTA--TTTTT
17984519 ATTTTATTTTT
1 ATTTTATTTTT
17984530 CAGATTTATATGTTTT
1 ---ATTT-TAT-TTTT
17984546 ATTTTATTTT
1 ATTTTATTTT
17984556 AGTATGCACT
Statistics
Matches: 89, Mismatches: 3, Indels: 26
0.75 0.03 0.22
Matches are distributed among these distances:
10 20 0.22
11 27 0.30
12 17 0.19
13 7 0.08
14 11 0.12
15 3 0.03
16 4 0.04
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:17984528 original size:5 final size:5
Alignment explanation
Indices: 17984432--17984503 Score: 83
Period size: 5 Copynumber: 13.6 Consensus size: 5
17984422 GATCAGTGAC
*
17984432 TTTAT TTAAT TTTA- TTTATT TTTATT TTTATT TTTATT TTTATT TTTAT
1 TTTAT TTTAT TTTAT TTTA-T TTTA-T TTTA-T TTTA-T TTTA-T TTTAT
17984481 TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTT
17984504 TATGGTTACT
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.06
5 31 0.49
6 28 0.44
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:17987935 original size:33 final size:33
Alignment explanation
Indices: 17987895--17987958 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
17987885 GAGTGACTAA
17987895 AAATAATTATTAATAATTTAA-TGAACATTTTAT
1 AAATAATTATTAATAA-TTAAGTGAACATTTTAT
* *
17987928 AAATAATTTTTAATAATTAAGTGATCATTTT
1 AAATAATTATTAATAATTAAGTGAACATTTT
17987959 CCTAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (33 bp):
AAATAATTATTAATAATTAAGTGAACATTTTAT
Found at i:17990147 original size:28 final size:27
Alignment explanation
Indices: 17990082--17990172 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 27
17990072 TAAAAATTGC
17990082 TAAAAATTATTTTAAAAATAGGAAAATAT
1 TAAAAATTA--TTAAAAATAGGAAAATAT
* * *
17990111 TAAATATTATATAAAATTATGAAAATA-
1 TAAAAATTAT-TAAAAATAGGAAAATAT
* *
17990138 TAACAAATTATTAAAAA-ATTGAGAATAT
1 TAA-AAATTATTAAAAATA-GGAAAATAT
17990166 TAAAAAT
1 TAAAAAT
17990173 ATTGAAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
26 1 0.02
27 20 0.38
28 23 0.44
29 8 0.15
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (27 bp):
TAAAAATTATTAAAAATAGGAAAATAT
Found at i:17990172 original size:27 final size:27
Alignment explanation
Indices: 17990082--17990172 Score: 69
Period size: 29 Copynumber: 3.3 Consensus size: 27
17990072 TAAAAATTGC
* * *
17990082 TAAAAATTATTTTAAAAATAGGAAAATAT
1 TAAAAATTA-TTAAAAAAT-TGAGAATAT
* * *
17990111 TAAATATTA-TATAAAATT-ATGAAAAT
1 TAAAAATTATTAAAAAATTGA-GAATAT
17990137 ATAACAAATTATTAAAAAATTGAGAATAT
1 -TAA-AAATTATTAAAAAATTGAGAATAT
17990166 TAAAAAT
1 TAAAAAT
17990173 ATTGAAATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 13 0.27
28 8 0.17
29 21 0.44
30 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (27 bp):
TAAAAATTATTAAAAAATTGAGAATAT
Found at i:17998660 original size:14 final size:14
Alignment explanation
Indices: 17998627--17998669 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
17998617 ACTATACTTA
*
17998627 AATATTTAAATA-T
1 AATAATTAAATATT
17998640 AATAATTAAATATT
1 AATAATTAAATATT
* *
17998654 TATAATTAGATATT
1 AATAATTAAATATT
17998668 AA
1 AA
17998670 CACAATTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
AATAATTAAATATT
Found at i:17998944 original size:16 final size:17
Alignment explanation
Indices: 17998913--17998945 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17998903 GTTCTTTATT
17998913 ACTTTTTAAGGAAAAAC
1 ACTTTTTAAGGAAAAAC
*
17998930 ACTTTTTAATGAAAAA
1 ACTTTTTAAGGAAAAA
17998946 TTCATCTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.33
Consensus pattern (17 bp):
ACTTTTTAAGGAAAAAC
Found at i:18008655 original size:3 final size:3
Alignment explanation
Indices: 18008647--18008684 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
18008637 TCGACATTGC
18008647 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
18008685 CTCAATAGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:18009543 original size:18 final size:19
Alignment explanation
Indices: 18009500--18009570 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
18009490 AAAAAGATAT
* * *
18009500 ATATATATAATTTTCTTAA
1 ATATTTATAATTTTATAAA
18009519 ATATTTATAATTTTATAAA
1 ATATTTATAATTTTATAAA
*
18009538 AT-TTTATAACTTCTA-AAA
1 ATATTTATAA-TTTTATAAA
*
18009556 TATATTTTTAATTTT
1 -ATATTTATAATTTT
18009571 TTCCATTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
18 10 0.23
19 27 0.63
20 6 0.14
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATTTATAATTTTATAAA
Found at i:18009714 original size:17 final size:16
Alignment explanation
Indices: 18009684--18009760 Score: 57
Period size: 19 Copynumber: 4.3 Consensus size: 16
18009674 ACATAATAAT
18009684 ATTTTATAATTTTTA-A
1 ATTTT-TAATTTTTATA
18009700 CATTTTTAATATTTTATA
1 -ATTTTTAAT-TTTTATA
*
18009718 ATTTTTATAGTTTTCTTTA
1 ATTTTTA-A-TTTT-TATA
18009737 ATTTTATAATATTTTAATA
1 ATTTT-TAAT-TTTT-ATA
18009756 ATTTT
1 ATTTT
18009761 AAGCTAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
16 4 0.08
17 17 0.34
18 7 0.14
19 20 0.40
20 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (16 bp):
ATTTTTAATTTTTATA
Found at i:18009723 original size:9 final size:9
Alignment explanation
Indices: 18009679--18009760 Score: 64
Period size: 9 Copynumber: 8.9 Consensus size: 9
18009669 TCATAACATA
18009679 ATAATATTTT
1 ATAAT-TTTT
18009689 ATAATTTTT
1 ATAATTTTT
18009698 A-ACA-TTTT
1 ATA-ATTTTT
18009706 -TAATATTTT
1 ATAAT-TTTT
18009715 ATAATTTTT
1 ATAATTTTT
*
18009724 ATAGTTTTCT
1 ATAATTTT-T
*
18009734 TTAA-TTTT
1 ATAATTTTT
18009742 ATAATATTTT
1 ATAAT-TTTT
18009752 AATAATTTT
1 -ATAATTTT
18009761 AAGCTAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
7 1 0.02
8 10 0.17
9 24 0.41
10 19 0.32
11 5 0.08
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:18009757 original size:19 final size:19
Alignment explanation
Indices: 18009680--18009761 Score: 70
Period size: 17 Copynumber: 4.6 Consensus size: 19
18009670 CATAACATAA
18009680 TAAT-ATTTTATAAT-TTT
1 TAATAATTTTATAATATTT
*
18009697 TAA-CATTTT-TAATATTT
1 TAATAATTTTATAATATTT
18009714 T-ATAATTTT-T-ATAGTTT
1 TAATAATTTTATAATA-TTT
**
18009731 TCTTTAATTTTATAATATTT
1 T-AATAATTTTATAATATTT
18009751 TAATAATTTTA
1 TAATAATTTTA
18009762 AGCTAAAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
16 8 0.15
17 22 0.42
19 15 0.28
20 5 0.09
21 3 0.06
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (19 bp):
TAATAATTTTATAATATTT
Found at i:18019404 original size:230 final size:230
Alignment explanation
Indices: 18019001--18019461 Score: 823
Period size: 230 Copynumber: 2.0 Consensus size: 230
18018991 CTTATTAGAA
*
18019001 GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
1 GTTTACAAATTGCAGTAGGATTTTCGCATAAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
* *
18019066 AACCATAAGATCTTTTATCACAAAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
66 AACCATAAGATCTTCTATCACAAAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCGGTATTG
* *
18019131 ATAATTTGCAAGCCTTTAGGAGCCCGTTTCACCATTACACTTAGTATATAAAGCTTCATGGTTAA
131 ATAATTTGCAAGCCTTTAGGACCCCGTTTCACCATTACACTTAGTATACAAAGCTTCATGGTTAA
* *
18019196 GGGATCTTCACATCTCAAACATCAGGGATCATGAT
196 AGGAACTTCACATCTCAAACATCAGGGATCATGAT
*
18019231 GTTTACAGATTGCAGTAGGATTTTCGCATAAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
1 GTTTACAAATTGCAGTAGGATTTTCGCATAAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
** *
18019296 AACTGTAAGATCTTCTATCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCGGTATTG
66 AACCATAAGATCTTCTATCACAAAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCGGTATTG
18019361 ATAATTTGCAAGCCTTTAGGACCCCGTTTCACCATTACACTTAGTATACAAAGCTTCATGGTTAA
131 ATAATTTGCAAGCCTTTAGGACCCCGTTTCACCATTACACTTAGTATACAAAGCTTCATGGTTAA
18019426 AGGAACTTCACATCTCAAACATCAGGGATCATGAT
196 AGGAACTTCACATCTCAAACATCAGGGATCATGAT
18019461 G
1 G
18019462 CATCTGATAA
Statistics
Matches: 220, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 220 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (230 bp):
GTTTACAAATTGCAGTAGGATTTTCGCATAAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
AACCATAAGATCTTCTATCACAAAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCGGTATTG
ATAATTTGCAAGCCTTTAGGACCCCGTTTCACCATTACACTTAGTATACAAAGCTTCATGGTTAA
AGGAACTTCACATCTCAAACATCAGGGATCATGAT
Found at i:18019731 original size:5 final size:5
Alignment explanation
Indices: 18019721--18019749 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
18019711 GACCAAGAAC
18019721 CAAAA CAAAA CAAAA CAAAA CAAAA CAAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CAAA
18019750 GGATATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:18029525 original size:21 final size:21
Alignment explanation
Indices: 18029467--18029531 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 21
18029457 TACTCCTTTT
* *
18029467 ATAAAGTTTATATAATTTTAA
1 ATAAAATTTAGATAATTTTAA
**
18029488 A-AAAATTTAG-TCTTTTTAA
1 ATAAAATTTAGATAATTTTAA
* *
18029507 ATAAAATTTTGATAATTTTTA
1 ATAAAATTTAGATAATTTTAA
18029528 ATAA
1 ATAA
18029532 TTTCTAAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 8 0.24
20 15 0.44
21 11 0.32
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
ATAAAATTTAGATAATTTTAA
Found at i:18030391 original size:15 final size:13
Alignment explanation
Indices: 18030363--18030396 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
18030353 ATAATAAATG
18030363 TTTTAAAAAAGTT
1 TTTTAAAAAAGTT
*
18030376 TTTTCAAAAAAGGT
1 TTTT-AAAAAAGTT
18030390 TTTTAAA
1 TTTTAAA
18030397 TTTTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAAGTT
Found at i:18031205 original size:24 final size:25
Alignment explanation
Indices: 18031177--18031225 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
18031167 TTCCTTACCA
18031177 TTTATTTT-T-AAAATAATAATTTTT
1 TTTATTTTGTGAAAATAAT-ATTTTT
*
18031201 TTTATTTTGTGAAAATTATATTTTT
1 TTTATTTTGTGAAAATAATATTTTT
18031226 CTTAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 7 0.32
26 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTATTTTGTGAAAATAATATTTTT
Found at i:18032857 original size:23 final size:23
Alignment explanation
Indices: 18032830--18032905 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
18032820 AGTGTTATTG
18032830 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACGT
*
18032853 TTCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACGT
* * *
18032876 AACAGTGATAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACGT
18032899 ATCAGTG
1 ATCAGTG
18032906 TTGCACTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACGT
Found at i:18043974 original size:44 final size:45
Alignment explanation
Indices: 18043926--18044458 Score: 411
Period size: 44 Copynumber: 11.9 Consensus size: 45
18043916 AGAGGTATAG
*
18043926 GATTTGTCA-CTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
18043970 GATTTGT-AGCTTCAA--T-CT--ACT----CTTCAGGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * *
18044005 GATTTGT-AGCTTCAATCTACTCTACTGCAACTTCAAGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * *
18044049 GATTTGT-AGCTTTC-ATTTGCTCCACTGCAACTTTAAGGAGATAA
1 GATTTGTCAGC-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** * * *
18044093 AATTTGTTATGGTGACTTCAATCCAAC-CCACTGCAACTTTAGAGG-TATAG
1 GATTTGTCA----G-CTTCAAT-CTGCTCCACTGCAACTTCAG-GGAGATAA
*
18044143 GATTTGTC-GCTTCAATATGCTCCACTGCAACTTCAGGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
*
18044187 GATTTG-CAGCTTCAATCTGCTCCACTGCAACTTCTGGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
*
18044231 GATTTGT-AGCTTTC-ATCTGCTCTACTGCAACTTCAGGGAGATAA
1 GATTTGTCAGC-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * *
18044275 GATTT-TCTATGGTGGCTTCAATCTAAC-CCACTGTAACTTCA-GAAGTATAG
1 GATTTGTC-A-----GCTTCAATCT-GCTCCACTGCAACTTCAGGGAG-ATAA
* *
18044325 GATTTGTC-GCTTCAATATGTTCCACTGCAACTTCAGGGAGATAA
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
18044369 GATTTG-CTATGGTGGCTTCAATCTGAC-CCACTGCAACTTCA-GAAGTATAG
1 GATTTGTC-A-----GCTTCAATCTG-CTCCACTGCAACTTCAGGGAG-ATAA
*
18044419 GATTTGTC-GCTTCTATCTGCTCCACTGCAACTTCAGGGAG
1 GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
18044459 TTAGGATTCG
Statistics
Matches: 398, Mismatches: 41, Indels: 99
0.74 0.08 0.18
Matches are distributed among these distances:
35 29 0.07
37 1 0.00
38 2 0.01
39 3 0.01
40 3 0.01
41 2 0.01
42 1 0.00
43 8 0.02
44 229 0.58
45 15 0.04
49 13 0.03
50 85 0.21
51 7 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (45 bp):
GATTTGTCAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
Found at i:18044002 original size:35 final size:35
Alignment explanation
Indices: 18043956--18044027 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
18043946 TCCACTACAA
18043956 CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACT
1 CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACT
18043991 CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACT
1 CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACT
18044026 CT
1 CT
18044028 ACTGCAACTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (35 bp):
CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACT
Found at i:18044130 original size:94 final size:94
Alignment explanation
Indices: 18044028--18044517 Score: 518
Period size: 94 Copynumber: 5.3 Consensus size: 94
18044018 AATCTACTCT
* * * *
18044028 ACTGCAACTTCAAGGAG-ATAAGATTTGTAGCTTTC-ATTTGCTCCACTGCAACTTTAAGGAGAT
1 ACTGCAACTTC-AGGAGTATAAGATTTGTCGC-TTCAATATGCTCCACTGCAACTTCAGGGAGAT
* *
18044091 AAAATTTGTTATGGTGACTTCAATCCAACCC
64 AAGATTTGCTATGGTGACTTCAATCCAACCC
* *
18044122 ACTGCAACTTTA-GAGGTATAGGATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGGA-GTATAAGATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATA
**
18044186 AGATTTGC-A----G-CTTCAAT-CTGCTCC
65 AGATTTGCTATGGTGACTTCAATCCAAC-CC
* * * *
18044210 ACTGCAACTTCTGGGAG-ATAAGATTTGTAGCTTTC-ATCTGCTCTACTGCAACTTCAGGGAGAT
1 ACTGCAACTTC-AGGAGTATAAGATTTGTCGC-TTCAATATGCTCCACTGCAACTTCAGGGAGAT
* * *
18044273 AAGATTTTCTATGGTGGCTTCAATCTAACCC
64 AAGATTTGCTATGGTGACTTCAATCCAACCC
* * * *
18044304 ACTGTAACTTCAGAAGTATAGGATTTGTCGCTTCAATATGTTCCACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGGAGTATAAGATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAA
* **
18044369 GATTTGCTATGGTGGCTTCAATCTGACCC
66 GATTTGCTATGGTGACTTCAATCCAACCC
* * * * * *
18044398 ACTGCAACTTCAGAAGTATAGGATTTGTCGCTTCTATCTGCTCCACTGCAACTTCAGGGAGTTAG
1 ACTGCAACTTCAGGAGTATAAGATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAA
* * *
18044463 GATTCGCTATGGTGACTTCAATCCGACCT
66 GATTTGCTATGGTGACTTCAATCCAACCC
* * *
18044492 ATTACAACTTCAGGGGTATAAGATTT
1 ACTGCAACTTCAGGAGTATAAGATTT
18044518 TTGGTTTCAC
Statistics
Matches: 335, Mismatches: 45, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
87 2 0.01
88 65 0.19
89 6 0.02
90 2 0.01
92 2 0.01
93 13 0.04
94 244 0.73
95 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (94 bp):
ACTGCAACTTCAGGAGTATAAGATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAA
GATTTGCTATGGTGACTTCAATCCAACCC
Found at i:18044232 original size:182 final size:181
Alignment explanation
Indices: 18043991--18044504 Score: 665
Period size: 182 Copynumber: 2.8 Consensus size: 181
18043981 TCAATCTACT
* * *
18043991 CTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCTACTGCAACTTCAAGGAGATAAGATTTGT
1 CTTCAGGGAGATAAGATTTGCAGCTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATTTGT
* * * *
18044056 AGCTTTCATTTGCTCCACTGCAACTTTAAGGAGATAAAATTTGTTATGGTGACTTCAATCCAACC
65 AGCTTTCATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATGGTGACTTCAATCCAACC
* *
18044121 CACTGCAACTTTAGAGGTATAGGATTTGTCGCTTCAATATGCTCCACTGCAA
130 CACTGCAACTTCAGAAGTATAGGATTTGTCGCTTCAATATGCTCCACTGCAA
*
18044173 CTTCAGGGAGATAAGATTTGCAGCTTCAATCTGCTCCACTGCAACTTCTGGGAGATAAGATTTGT
1 CTTCAGGGAGATAAGATTTGCAGCTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATTTGT
* * *
18044238 AGCTTTCATCTGCTCTACTGCAACTTCAGGGAGATAAGATTT-TCTATGGTGGCTTCAATCTAAC
65 AGCTTTCATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-TATGGTGACTTCAATCCAAC
* *
18044302 CCACTGTAACTTCAGAAGTATAGGATTTGTCGCTTCAATATGTTCCACTGCAA
129 CCACTGCAACTTCAGAAGTATAGGATTTGTCGCTTCAATATGCTCCACTGCAA
* *
18044355 CTTCAGGGAGATAAGATTTGCTATGGTGGCTTCAATCTGAC-CCACTGCAACTTCAGAAGTATAG
1 CTTCAGGGAGATAAGATTTGC-A-----GCTTCAATCTG-CTCCACTGCAACTTCAGGAG-ATAA
* * * * *
18044419 GATTTGTCGC-TTCTATCTGCTCCACTGCAACTTCAGGGAGTTAGGATTCGCTATGGTGACTTCA
58 GATTTGTAGCTTTC-ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATGGTGACTTCA
* * * *
18044483 ATCCGACCTATTACAACTTCAG
122 ATCCAACCCACTGCAACTTCAG
18044505 GGGTATAAGA
Statistics
Matches: 289, Mismatches: 32, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
181 1 0.00
182 185 0.64
183 1 0.00
187 6 0.02
188 95 0.33
189 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (181 bp):
CTTCAGGGAGATAAGATTTGCAGCTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGATTTGTA
GCTTTCATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATGGTGACTTCAATCCAACCC
ACTGCAACTTCAGAAGTATAGGATTTGTCGCTTCAATATGCTCCACTGCAA
Found at i:18044466 original size:138 final size:136
Alignment explanation
Indices: 18044005--18044458 Score: 451
Period size: 138 Copynumber: 3.3 Consensus size: 136
18043995 AGGGAGATAA
* * * * *
18044005 GATTTGTAGCTTCAATCTACTCTACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTC-ATTTGC
1 GATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTCGC-TTCAATATGC
* * * ** *
18044069 TCCACTGCAACTTTAAGGAGATAAAATTTGTTATGGTGACTTCAATCCAACCCACTGCAACTTTA
65 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATGGTG-CTTCAATCTGACCCACTGCAACTTCA
*
18044134 GAGGTATAG
128 GAAGTATAG
* * *
18044143 GATTTGTCGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CAGCTTCAATCTGC
1 GATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTC-GCTTCAATATGC
* * *
18044207 TCCACTGCAACTTCTGGGAGATAAGATTTGTA-GCT--TTC-ATCTG-CTCTACTGCAACTTCAG
65 TCCACTGCAACTTCAGGGAGATAAGATTTGTATGGTGCTTCAATCTGAC-CCACTGCAACTTCA-
* *
18044267 GGAG-ATAA
128 GAAGTATAG
* * * *
18044275 GATTTTCTATGGTGGCTTCAATCTAAC-CCACTGTAACTTCA-GAAGTATAGGATTTGTCGCTTC
1 GA---T-T-T-GTCGCTTCAATCT-ACTCCACTGCAACTTCAGGGAG-ATAAGATTTGTCGCTTC
*
18044338 AATATGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTATGGTGGCTTCAATCTGACCCACTGC
58 AATATGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATGGT-GCTTCAATCTGACCCACTGC
18044403 AACTTCAGAAGTATAG
121 AACTTCAGAAGTATAG
* *
18044419 GATTTGTCGCTTCTATCTGCTCCACTGCAACTTCAGGGAG
1 GATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGAG
18044459 TTAGGATTCG
Statistics
Matches: 256, Mismatches: 37, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
131 1 0.00
132 20 0.08
133 5 0.02
135 1 0.00
136 3 0.01
137 10 0.04
138 174 0.68
139 8 0.03
140 3 0.01
141 1 0.00
143 6 0.02
144 23 0.09
145 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (136 bp):
GATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTCGCTTCAATATGCT
CCACTGCAACTTCAGGGAGATAAGATTTGTATGGTGCTTCAATCTGACCCACTGCAACTTCAGAA
GTATAG
Found at i:18054970 original size:5 final size:5
Alignment explanation
Indices: 18054960--18055031 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
18054950 TGTTAAAAAA
* *
18054960 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
18055006 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
18055032 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:18055013 original size:19 final size:19
Alignment explanation
Indices: 18054989--18055031 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
18054979 ATTATGTTTT
18054989 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
18055008 TATATTATATTATATTATA
1 TATATTATATTATATTATA
18055027 TATAT
1 TATAT
18055032 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:18055064 original size:18 final size:19
Alignment explanation
Indices: 18055036--18055075 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
18055026 ATATATACAT
*
18055036 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
18055055 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
18055073 AAA
1 AAA
18055076 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:18056040 original size:44 final size:45
Alignment explanation
Indices: 18055945--18056078 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
18055935 ACAGGACAGA
* *
18055945 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
18055991 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
18056035 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
18056079 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:18066495 original size:132 final size:132
Alignment explanation
Indices: 18066327--18066747 Score: 547
Period size: 132 Copynumber: 3.2 Consensus size: 132
18066317 AACACCAAGG
* * * *
18066327 AGATAGGATTCGCTGCCTTCGATCTGCTCTACTACTGCTTAGGGATACAAGATCTACAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
* * * ** *
18066392 ACCTACTCCATTGCTGCTCAGGGAGA-AGGGATTGATGGCTTAAATCTATTTCTCTACTACCTTG
66 ACCTACTCCACTGCTGCTCAGGGAGATA-GGATTGGTGACTTAAATCTGCTTCCCTACTACCTTG
*
18066456 GAA
130 GGA
* * * * * *
18066459 AGATATGATTTGCTGCCTTCAATCTGCTCCACTACTGCTTAGGGAGATAGGGTCTATAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
* *
18066524 ACCTACTCCACTGCTGCCCAGGGAGATAGGACTGGTGACTTAAATCTGCTTCCCTACTACCTTGG
66 ACCTACTCCACTGCTGCTCAGGGAGATAGGATTGGTGACTTAAATCTGCTTCCCTACTACCTTGG
18066589 GA
131 GA
* *** *
18066591 AGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
* * * *
18066656 ACCTATTCCACTACTACTCAGGGAGATAGGATTGGTGACTTAAATATGCTTCCCTACTACCTTGG
66 ACCTACTCCACTGCTGCTCAGGGAGATAGGATTGGTGACTTAAATCTGCTTCCCTACTACCTTGG
18066721 GA
131 GA
* * *
18066723 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTTGCTGCCTTCGATCT
18066748 ACTTCGCTAC
Statistics
Matches: 250, Mismatches: 38, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
132 249 1.00
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
AGATAAGATTTGCTGCCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
ACCTACTCCACTGCTGCTCAGGGAGATAGGATTGGTGACTTAAATCTGCTTCCCTACTACCTTGG
GA
Found at i:18066523 original size:44 final size:44
Alignment explanation
Indices: 18066475--18066683 Score: 138
Period size: 44 Copynumber: 4.8 Consensus size: 44
18066465 GATTTGCTGC
* * *
18066475 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAGGGTCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* * * ** * ***
18066519 CTTCAACCTACTCCACTGCTGCCCAGGGAGATAGGA-CTGGTGA-
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAAT
* * * *
18066562 CTTAAATCTGCTTCC-CTACTACCTT-GGGAAGATAAGATTTACCAT
1 CTTCAATCTGC-TCCACTACT-GCTTAGGG-AGATAAGATCTACAAT
* * *
18066607 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* ** * *
18066651 CTTCAACCTATTCCACTACTACTCAGGGAGATA
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATA
18066684 GGATTGGTGA
Statistics
Matches: 123, Mismatches: 34, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
43 17 0.14
44 88 0.72
45 18 0.15
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
Found at i:18066787 original size:45 final size:45
Alignment explanation
Indices: 18066738--18067456 Score: 617
Period size: 45 Copynumber: 16.0 Consensus size: 45
18066728 AGATTCGCCG
* *
18066738 TCTTCGATCTACTTCGCTACCAGTACAGAAAGACAAGATATGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* *
18066783 TCTTCGATCTACTTCACT-CCCGATACAGGAAA-ACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAG-TACA-GAAAGACAAGATCTGCTA
* * * *
18066828 CCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* ** * * * * * *
18066873 TTTTTTTAACTTACTCCACTG-CTGCT-CA-AGGAGACAAG-GCTTG-TGA
1 -TCTTCGATC-TACTTCGCTGCCAG-TACAGA-AAGACAAGATC-TGCT-A
*
18066919 -CTTCGATCTACTTCGCTGAC-GATACATG-AAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAG-TACA-GAAAGACAAGATCTGCTA
* * *
18066963 TCTTCGATCTACTTCGCTGCCAGTATAGAAAGACAAGATATGTTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* *
18067008 TCTTCGATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* * * * * *
18067053 TCTTTGATCTACTTCGCTGCCAGTATAGGAAGATAAAATTTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* ** *
18067098 TCTTCGACCTACTTTACTGCCAGTACAGAAAGACAAGATCT-TTCA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCT-A
* * *
18067143 TCTTCGATCTACTTCGCTACCAATACA-AGAAGACAAAATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGA-AAGACAAGATCTGCTA
*** **
18067188 TCTTCGATCTACTTTTTTGCCAGTACAGGGAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* ** * *
18067233 TCTTCGATATACTTTACTGCCAGTACAGAAAGACAAGATCTACCA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* * *
18067278 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* * *
18067323 TCTTCGATCTACTTCGTTGCCAGTACAGGAAGACAAGATCTACTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
* * * * * * * *
18067368 TTTTCGACCTACTTCACTG-CTGCT-CA-AGGAGATAAGGT-TGGTA
1 TCTTCGATCTACTTCGCTGCCAG-TACAGA-AAGACAAGATCTGCTA
* * *
18067411 TCTTCGATCAACTTCGCTGCCAATACA-AGAAGACAAGATTTGCTA
1 TCTTCGATCTACTTCGCTGCCAGTACAGA-AAGACAAGATCTGCTA
18067456 T
1 T
18067457 TTTCAACCTA
Statistics
Matches: 535, Mismatches: 111, Indels: 56
0.76 0.16 0.08
Matches are distributed among these distances:
43 29 0.05
44 49 0.09
45 424 0.79
46 24 0.04
47 9 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (45 bp):
TCTTCGATCTACTTCGCTGCCAGTACAGAAAGACAAGATCTGCTA
Found at i:18067062 original size:135 final size:135
Alignment explanation
Indices: 18066738--18067456 Score: 706
Period size: 135 Copynumber: 5.3 Consensus size: 135
18066728 AGATTCGCCG
* * * * *
18066738 TCTTCGATCTACTTCGCTACCAGTACAGAAAGACAAGATATGCTATCTTCGATCTACTTCACT-C
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGC
* * * * * * *
18066802 CCGATACAGGAAAACAAGATCTGCTACCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGAT
66 CAG-TACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAGTACAGAAAGACAAGAT
18066867 CTGCTA
130 CTGCTA
* ** * * * *** *
18066873 TTTTTTTAACTTACTCCACTGCTGCT-CAAGG-AGACAAG-GCTTG-TGA-CTTCGATCTACTTC
1 -TCTTCGATC-TACTTCGCTGCCAATAC-AGGAAGACAAGATC-TGCT-ATCTTCGATCTACTTC
* * * *
18066933 GCTGAC-GATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAGTATAGAAAGAC
61 GCTGCCAG-TACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAGTACAGAAAGAC
* *
18066997 AAGATATGTTA
125 AAGATCTGCTA
* * *
18067008 TCTTCGATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGC
* * * * * *
18067073 CAGTATAGGAAGATAAAATTTGCTATCTTCGACCTACTTTACTGCCAGTACAGAAAGACAAGATC
66 CAGTACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAGTACAGAAAGACAAGATC
*
18067138 T-TTCA
131 TGCT-A
* * * ***
18067143 TCTTCGATCTACTTCGCTACCAATACAAGAAGACAAAATCTGCTATCTTCGATCTACTTTTTTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGC
* * *
18067208 CAGTACAGGGAGACAAGATCTGCTATCTTCGATATACTTTACTGCCAGTACAGAAAGACAAGATC
66 CAGTACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAGTACAGAAAGACAAGATC
* *
18067273 TACCA
131 TGCTA
* *
18067278 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCGATCTACTTCGTTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGC
* * * * * * *
18067343 CAGTACAGGAAGACAAGATCTACTATTTTCGACCTACTTCACTG-CTGCT-CA-AGGAGATAAGG
66 CAGTACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAG-TACAGA-AAGACAAGA
*
18067405 T-TGGTA
129 TCTGCTA
* * *
18067411 TCTTCGATCAACTTCGCTGCCAATACAAGAAGACAAGATTTGCTAT
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT
18067457 TTTCAACCTA
Statistics
Matches: 484, Mismatches: 84, Indels: 33
0.81 0.14 0.05
Matches are distributed among these distances:
133 59 0.12
134 29 0.06
135 367 0.76
136 18 0.04
137 11 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (135 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGC
CAGTACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTGCCAGTACAGAAAGACAAGATC
TGCTA
Found at i:18073804 original size:16 final size:17
Alignment explanation
Indices: 18073774--18073813 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
18073764 GGCCAAACAT
* *
18073774 AAATAAACAGATAAATA
1 AAATAAAAAGATAAAGA
18073791 AAATAAAAAG-TAAAGA
1 AAATAAAAAGATAAAGA
18073807 AAATAAA
1 AAATAAA
18073814 GTAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (17 bp):
AAATAAAAAGATAAAGA
Found at i:18076066 original size:22 final size:22
Alignment explanation
Indices: 18076026--18076067 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18076016 AATTTTAAAA
**
18076026 TATTTTTAAAATACTTTTTTTT
1 TATTTTTAAAATAAATTTTTTT
18076048 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAATAAATTTTT
18076068 AGTGTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTTAAAATAAATTTTTTT
Found at i:18078594 original size:13 final size:13
Alignment explanation
Indices: 18078576--18078601 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18078566 CCCGACCCGT
18078576 TTTTATTTTTTTA
1 TTTTATTTTTTTA
18078589 TTTTATTTTTTTA
1 TTTTATTTTTTTA
18078602 CTTAAAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:18080751 original size:13 final size:13
Alignment explanation
Indices: 18080733--18080836 Score: 90
Period size: 13 Copynumber: 8.2 Consensus size: 13
18080723 TATATTAAAG
*
18080733 TTAAAACATTATA
1 TTAAAACAGTATA
*
18080746 TTAAAACAATATA
1 TTAAAACAGTATA
*
18080759 TTAAAAAAGTATA
1 TTAAAACAGTATA
* *
18080772 TTTATAATAGTATA
1 -TTAAAACAGTATA
*
18080786 TTAAAACGGTATA
1 TTAAAACAGTATA
*
18080799 TTACAA-A-T-T-
1 TTAAAACAGTATA
*
18080808 TTATAACAGTATA
1 TTAAAACAGTATA
*
18080821 TTAAAATAGTATA
1 TTAAAACAGTATA
18080834 TTA
1 TTA
18080837 CATTAAAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
11 2 0.03
12 1 0.01
13 52 0.71
14 11 0.15
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:18080765 original size:27 final size:27
Alignment explanation
Indices: 18080733--18080800 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
18080723 TATATTAAAG
* *
18080733 TTAAAACATTATA-TTAAAACAATATA
1 TTAAAAAAGTATATTTAAAACAATATA
* * *
18080759 TTAAAAAAGTATATTTATAATAGTATA
1 TTAAAAAAGTATATTTAAAACAATATA
**
18080786 TTAAAACGGTATATT
1 TTAAAAAAGTATATT
18080801 ACAAATTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 11 0.32
27 23 0.68
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (27 bp):
TTAAAAAAGTATATTTAAAACAATATA
Found at i:18080819 original size:35 final size:35
Alignment explanation
Indices: 18080772--18080838 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
18080762 AAAAAGTATA
* *
18080772 TTTATAATAGTATATTAAAACGGTATATTACAAAT
1 TTTATAACAGTATATTAAAACAGTATATTACAAAT
*
18080807 TTTATAACAGTATATTAAAATAGTATATTACA
1 TTTATAACAGTATATTAAAACAGTATATTACA
18080839 TTAAAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (35 bp):
TTTATAACAGTATATTAAAACAGTATATTACAAAT
Found at i:18082730 original size:13 final size:14
Alignment explanation
Indices: 18082712--18082750 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
18082702 ACGGGGTCGA
*
18082712 GGAAATGGG-GAGG
1 GGAAATGGGAAAGG
*
18082725 GGAAATGGGAAATG
1 GGAAATGGGAAAGG
18082739 GGAAATGGGAAA
1 GGAAATGGGAAA
18082751 TGTAAAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.41, C:0.00, G:0.49, T:0.10
Consensus pattern (14 bp):
GGAAATGGGAAAGG
Found at i:18082736 original size:7 final size:7
Alignment explanation
Indices: 18082724--18082752 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
18082714 AAATGGGGAG
18082724 GGGAAAT
1 GGGAAAT
18082731 GGGAAAT
1 GGGAAAT
18082738 GGGAAAT
1 GGGAAAT
18082745 GGGAAAT
1 GGGAAAT
18082752 G
1 G
18082753 TAAAATGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (7 bp):
GGGAAAT
Found at i:18082758 original size:14 final size:14
Alignment explanation
Indices: 18082727--18082770 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
18082717 TGGGGAGGGG
**
18082727 AAATGGGAAATGGG
1 AAATGGGAAATGTA
18082741 AAATGGGAAATGTA
1 AAATGGGAAATGTA
**
18082755 AAATGTAAAATGTA
1 AAATGGGAAATGTA
18082769 AA
1 AA
18082771 TGTAATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.27, T:0.20
Consensus pattern (14 bp):
AAATGGGAAATGTA
Found at i:18083400 original size:13 final size:13
Alignment explanation
Indices: 18083382--18083406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18083372 AATTTTAATG
18083382 TAATATACTGTTT
1 TAATATACTGTTT
18083395 TAATATACTGTT
1 TAATATACTGTT
18083407 ATAAAATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
TAATATACTGTTT
Found at i:18096263 original size:49 final size:48
Alignment explanation
Indices: 18096200--18096296 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 48
18096190 TCTTGGGGCA
18096200 TCGACTATAGATCTCCTAAACACATGTCAAACTTAGAATGATCTTCAG
1 TCGACTATAGATCTCCTAAACACATGTCAAACTTAGAATGATCTTCAG
18096248 NTCGACTATAGATCTCCTAAACACATGTCAAACTTAGAATGATCTTCAG
1 -TCGACTATAGATCTCCTAAACACATGTCAAACTTAGAATGATCTTCAG
18096297 AAAGTTTGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (48 bp):
TCGACTATAGATCTCCTAAACACATGTCAAACTTAGAATGATCTTCAG
Found at i:18097381 original size:41 final size:41
Alignment explanation
Indices: 18097270--18097551 Score: 165
Period size: 41 Copynumber: 6.6 Consensus size: 41
18097260 AAGTAAATCC
* *
18097270 TATCTCCCTGAAGTTGCAGTGGAGC-GAATTTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAG-A--TAAAATCA-AG-TCT
* * * *** * *
18097315 TATCTCTCTTAAGTTGCAAAAGAGCAGATCACATCAAGTCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATAAAATCAAGTCT
* *
18097356 TATCTCCCTGAAGTTGTAGTGGAGCAGAAAAAAAGTCAA-TCC
1 TATCTCCCTGAAGTTGTAGTGGAGCAG-ATAAAA-TCAAGTCT
* * * *
18097398 TATCTCTCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGA--TAAAATCA-AG-TCT
* * * * *
18097443 TATCTCTCTGAAGTTGTAGTAGAGCAGATCACATCAAGTTT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATAAAATCAAGTCT
* * * * *
18097484 TATCTTCCTGAAGTTGTAGTGGAGAAGACAGAAGAAACTAA-TCC
1 TATCTCCCTGAAGTTGTAGTGGAGCAG--ATAA-AATC-AAGTCT
*
18097528 TATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGTAGTGGAG
18097552 TGGATTAAAA
Statistics
Matches: 182, Mismatches: 43, Indels: 25
0.73 0.17 0.10
Matches are distributed among these distances:
41 50 0.27
42 35 0.19
43 21 0.12
44 25 0.14
45 50 0.27
46 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAGATAAAATCAAGTCT
Found at i:18097455 original size:45 final size:43
Alignment explanation
Indices: 18097270--18097591 Score: 162
Period size: 45 Copynumber: 7.5 Consensus size: 43
18097260 AAGTAAATCC
* *
18097270 TATCTCCCTGAAGTTGCAGTGGAGC-GAATTTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAG-A--TAAAACCATAGATCT
* *** * * *
18097315 TATCTCTCTTAAGTTGCAAAAGAGCAGATCACATCA-AG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATAAAACCATAGATCT
* * * *
18097356 TATCTCCCTGAAGTTGTAGTGGAGCAGA-AAAA-AAGTCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATAAAACCA-T-AGATCT
*
18097398 TATCTCTCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGA--TAAAACCATAGATCT
* * * * * *
18097443 TATCTCTCTGAAGTTGTAGTAGAGCAGATCACATCA-AG-TTT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATAAAACCATAGATCT
* * * * *
18097484 TATCT-TCCTGAAGTTGTAGTGGAGAAGACAGAAGA-AACTA-ATCC
1 TATCTCT-CTGAAGTTGCAGTGGAGCAGATA-AA-ACCA-TAGATCT
* ** ** * *
18097528 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATGATAAACCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGA-TAAAACCATAGATCT
*
18097572 TATCTCTCTAAAGTTGCAGT
1 TATCTCTCTGAAGTTGCAGT
18097592 AGAGTAGGTC
Statistics
Matches: 209, Mismatches: 48, Indels: 41
0.70 0.16 0.14
Matches are distributed among these distances:
39 1 0.00
40 3 0.01
41 51 0.24
42 34 0.16
43 14 0.07
44 49 0.23
45 55 0.26
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (43 bp):
TATCTCTCTGAAGTTGCAGTGGAGCAGATAAAACCATAGATCT
Found at i:18097487 original size:128 final size:129
Alignment explanation
Indices: 18097256--18097595 Score: 479
Period size: 128 Copynumber: 2.6 Consensus size: 129
18097246 AGAACAAATT
* *
18097256 GAAAAAGTAAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTTAAAACCACAGATCTTATCTC
1 GAAAAAGT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCTTATCTC
* ** *
18097321 TCTTAAGTTGCAAAAGAGCAGATCACATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-A
65 TCTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGAAGACA
*
18097385 -AAAAAGTCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCTTATCTC
1 GAAAAAGT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCTTATCTC
* * * *
18097449 TCTGAAGTTGTAGTAGAGCAGATCACATCAAGTTTTATCTTCCTGAAGTTGTAGTGGAGAAGACA
65 TCTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGAAGACA
* * ** * *
18097514 GAAGAAACTAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGA-TTAAAATGATAAACCTTATCTC
1 GAA-AAAGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCTTATCTC
18097578 TCTAAAGTTGCAGTAGAG
65 TCTAAAGTTGCAGTAGAG
18097596 TAGGTCGCAT
Statistics
Matches: 188, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
128 116 0.62
129 35 0.19
130 33 0.18
131 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (129 bp):
GAAAAAGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTTAAAACCATAGATCTTATCTCT
CTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGAAGACA
Found at i:18099604 original size:8 final size:9
Alignment explanation
Indices: 18099590--18099614 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18099580 TTATCACTGT
18099590 TTTTTTTTA
1 TTTTTTTTA
18099599 TTTTTTTTA
1 TTTTTTTTA
18099608 TTTTTTT
1 TTTTTTT
18099615 GTTTCGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:18100715 original size:44 final size:44
Alignment explanation
Indices: 18100667--18101014 Score: 172
Period size: 44 Copynumber: 7.8 Consensus size: 44
18100657 CCTCGGTTGC
* * * *
18100667 AGTGGAGCAGGTTAAAGATTACAGATCTTATCTCCCTGAGTATT
1 AGTGGAGCAGATCAAAGATTACAGATCTTATCTCCCTAAGTAGT
* ** * * * *
18100711 AGTGGAGCAGATCGAAGA-CCCTAG-CCTTGTCTCCCTGAGTAGC
1 AGTGGAGCAGATCAAAGATTAC-AGATCTTATCTCCCTAAGTAGT
** * * *
18100754 AGTGGAATAGGTTGAAAAAAATTACAGATCTTATCTCCCTAAGTAGT
1 AGTGGAGCA-GAT--CAAAGATTACAGATCTTATCTCCCTAAGTAGT
* * *
18100801 AGTGGAGCAGAACGAAGATGT-CAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCAAAGAT-TACAGATCTTATCTCCCTAAGTAGT
** * * ** *
18100845 AGTGGAGCAGATTGAAG---CCAGTAATCCTATCTCTTTGAAGTTA-C
1 AGTGGAGCAGATCAAAGATTACAG--ATCTTATCTCCCT-AAG-TAGT
* * * * *
18100889 AGTGGAGCAGATTAAA-ATAATAGATCTTATCTCTCTGAAGTTGT
1 AGTGGAGCAGATCAAAGATTACAGATCTTATCTCCCT-AAGTAGT
* * * * * *
18100933 AGTGGAGTAGACCGAAGAATATCAGATCTTATCTCCATAAGCAGT
1 AGTGGAGCAGATCAAAGATTA-CAGATCTTATCTCCCTAAGTAGT
* * * *
18100978 AGTGGAGCAGATCGAAGATGACAGATTTTACCTCCCT
1 AGTGGAGCAGATCAAAGATTACAGATCTTATCTCCCT
18101015 GAGGATACAG
Statistics
Matches: 225, Mismatches: 61, Indels: 36
0.70 0.19 0.11
Matches are distributed among these distances:
41 3 0.01
43 34 0.15
44 118 0.52
45 26 0.12
46 21 0.09
47 23 0.10
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
AGTGGAGCAGATCAAAGATTACAGATCTTATCTCCCTAAGTAGT
Found at i:18100745 original size:87 final size:88
Alignment explanation
Indices: 18100646--18100818 Score: 233
Period size: 90 Copynumber: 2.0 Consensus size: 88
18100636 TCGAAAACAA
* * * *
18100646 AGCCTTGCCTCCCTCG-GTTGCAGTGGAGCAGGTT-AAAGATTACAGATCTTATCTCCCTGAGTA
1 AGCCTTGCCTCCCT-GAGTAGCAGTGGAACAGGTTAAAAAATTACAGATCTTATCTCCCTAAGTA
* *
18100709 TTAGTGGAGCAGATCGAAGACCCT
65 GTAGTGGAGCAGAACGAAGACCCT
* *
18100733 AGCCTTGTCTCCCTGAGTAGCAGTGGAATAGGTTGAAAAAAATTACAGATCTTATCTCCCTAAGT
1 AGCCTTGCCTCCCTGAGTAGCAGTGGAACAGGTT--AAAAAATTACAGATCTTATCTCCCTAAGT
18100798 AGTAGTGGAGCAGAACGAAGA
64 AGTAGTGGAGCAGAACGAAGA
18100819 TGTCAGATCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
86 1 0.01
87 28 0.38
90 45 0.61
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (88 bp):
AGCCTTGCCTCCCTGAGTAGCAGTGGAACAGGTTAAAAAATTACAGATCTTATCTCCCTAAGTAG
TAGTGGAGCAGAACGAAGACCCT
Found at i:18101064 original size:178 final size:177
Alignment explanation
Indices: 18100778--18101121 Score: 474
Period size: 178 Copynumber: 1.9 Consensus size: 177
18100768 AAAAAAATTA
* * * *
18100778 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGAACGAAGATGTCAGATCTTATCTCCCTAAGCA
1 CAGATCTTATCTCCATAAGCAGTAGTGGAGCAGAACGAAGATGACAGATCTTACCTCCCTAAGCA
* * * **
18100843 GTAGTGGAGCAGATTGAAGCCAGTAATCCTATCTCTTTGAAGTTACAGTGGAGCAGATTAAAATA
66 GTAGTAGAGCACATTGAAGCCACTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATA
* * *
18100908 ATAGATCTTATCTCTCTGAAGTTGTAGTGGAGTAGACCGAAGAATAT
131 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGACCGAAGAATAT
* * * *
18100955 CAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGATGACAGATTTTACCTCCCTGAGGA
1 CAGATCTTATCTCCATAAGCAGTAGTGGAGCAGAACGAAGATGACAGATCTTACCTCCCTAAGCA
* * **
18101020 -TACAGTAGAGTACATTGAAGCCACTAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 GT--AGTAGAGCACATTGAAGCCACTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAA
*
18101084 TAACAGATCTTATCTCTCTGAGGTTGCAGTAGAGTAGA
129 TAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
18101122 TCGCATCAGG
Statistics
Matches: 144, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
176 1 0.01
177 57 0.40
178 86 0.60
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
CAGATCTTATCTCCATAAGCAGTAGTGGAGCAGAACGAAGATGACAGATCTTACCTCCCTAAGCA
GTAGTAGAGCACATTGAAGCCACTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATA
ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGACCGAAGAATAT
Found at i:18101098 original size:44 final size:44
Alignment explanation
Indices: 18100880--18101122 Score: 148
Period size: 44 Copynumber: 5.5 Consensus size: 44
18100870 CCTATCTCTT
* * * *
18100880 TGAAGTTACAGTGGAGCAGATTAAAATAATAGATCTTATCTCTC
1 TGAAGTTGCAGTGGAGTAGATTAAAATAACAGATCTTATCTCCC
* ** * *
18100924 TGAAGTTGTAGTGGAGTAGACCGAAGAATATCAGATCTTATCTCCA
1 TGAAGTTGCAGTGGAGTAGA-TTAA-AATAACAGATCTTATCTCCC
** * * * * * * *
18100970 T-AAGCAGTAGTGGAGCAGATCGAAGATGACAGATTTTACCTCCC
1 TGAAGTTGCAGTGGAGTAGAT-TAAAATAACAGATCTTATCTCCC
* * * * * * *** *
18101014 TGAGGATACAGTAGAGTACATTGAAGCCACTA-ATCCTATCTCCC
1 TGAAGTTGCAGTGGAGTAGATTAAAATAAC-AGATCTTATCTCCC
* *
18101058 TGAAGTTGCAGTGGAGTGGATTAAAATAACAGATCTTATCTCTC
1 TGAAGTTGCAGTGGAGTAGATTAAAATAACAGATCTTATCTCCC
* *
18101102 TGAGGTTGCAGTAGAGTAGAT
1 TGAAGTTGCAGTGGAGTAGAT
18101123 CGCATCAGGT
Statistics
Matches: 142, Mismatches: 51, Indels: 12
0.69 0.25 0.06
Matches are distributed among these distances:
43 1 0.01
44 92 0.65
45 32 0.23
46 17 0.12
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGTAGATTAAAATAACAGATCTTATCTCCC
Found at i:18101292 original size:219 final size:217
Alignment explanation
Indices: 18100913--18101600 Score: 872
Period size: 219 Copynumber: 3.1 Consensus size: 217
18100903 AAATAATAGA
* * * * * *
18100913 TCTTATCTCTCTGAAGTTGTAGTGGAGTAGACCGAAGAATATCAGATCTTATCTCCATAAGCAGT
1 TCTTATCTCCCTGAGGTTGCAG-CGAGCAGACCGAAGAATAGCAGATCTTATCTCC-TAAGCAGT
** * * ** * * *
18100978 AGTGGAGCAGATCGAAGAT-GACAGATTTTACCTCCCTGAGGATACAGTAGAGTACATTGAAGCC
64 AGTGGAGCAGATCGAAGATGGTGA-ATCTTATCTCCCTGAGTTTACAGTGGAGCAGATTGAAGCC
* * *
18101042 AC-TAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAACAGATCTTATCTCTCTGAG
128 -CGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAG
*
18101106 GTTGCAGTAGAGTAGATCGCATCAGG
192 GTTGCAGTAGAGTAGATCACATCAGG
18101132 TCTTATCTCCCT-AGAGTTGCAGCGAAGCAGACCGAAGAATTA-CAGATCTTATCTTCCTAAGCA
1 TCTTATCTCCCTGAG-GTTGCAGCG-AGCAGACCGAAGAA-TAGCAGATCTTATC-TCCTAAGCA
* *
18101195 GTAGTGGAGCGGATCGAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGCAGATTGAAGC
62 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGCAGATTGAAGC
* ** *
18101260 CCGTAATCCTATCTTCCTGAAGTTATAGTGGAGCGGATTAAAAACAATTGATCTTATCTCTCTGA
127 CCGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAACAATAGATCTTATCTCTCTGA
18101325 GGTTGCAGTAGAGTAGATCACATCAGG
191 GGTTGCAGTAGAGTAGATCACATCAGG
** * **
18101352 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGATTG-AGAA-AGCA-AGTCTTATCCCCCTGAAGTT
1 TCTTATCTCCCTGAGGTTGCAGC-GAGCAGACCGAAGAATAGCAGA-TCTTAT-CTCCT-AAGCA
18101414 GTAGTGG-GACAGA-CTGAAGATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGCAGATTGAA
62 GTAGTGGAG-CAGATC-GAAGATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGCAGATTGAA
*
18101477 GCCTGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTG
125 GCCCGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTG
* *
18101542 AAGTTGCAGCAGAGTAGATCACATCAGG
190 AGGTTGCAGTAGAGTAGATCACATCAGG
18101570 TCTTATCTCCCTGAGGTTGCAGCTGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGC-GAGCAGA
18101601 TTGAGAAAGC
Statistics
Matches: 415, Mismatches: 39, Indels: 31
0.86 0.08 0.06
Matches are distributed among these distances:
217 2 0.00
218 95 0.23
219 233 0.56
220 82 0.20
221 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (217 bp):
TCTTATCTCCCTGAGGTTGCAGCGAGCAGACCGAAGAATAGCAGATCTTATCTCCTAAGCAGTAG
TGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGCAGATTGAAGCCCGT
AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAGGTTG
CAGTAGAGTAGATCACATCAGG
Found at i:18101408 original size:44 final size:44
Alignment explanation
Indices: 18101351--18101620 Score: 164
Period size: 44 Copynumber: 6.2 Consensus size: 44
18101341 ATCACATCAG
*
18101351 GTCTTATCTCCCTGAGGTTGCAGCGGAGCAGATTGAGAAAGCAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGAAAGCAA
* * * * ** *
18101395 GTCTTATCCCCCTGAAGTTGTAGTGG-GACAGACTGAAGATGGTGAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAG-CAGATTG-AGAAAG-CAA
* * *** *
18101441 -TCTTATCTCCCTG-AGTTTACAGTGGAGCAGATTGAAGCCTGTAA
1 GTCTTATCTCCCTGAAG-TTGCAGCGGAGCAGATTG-AGAAAGCAA
* * *
18101485 -TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-A-AAA-CAATA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGAAAGC-A-A
* * * * * * *
18101527 GATCTTATCTCTCTGAAGTTGCAGCAGAGTAGA-T--CACATCAG
1 G-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGAAAGCAA
* *
18101569 GTCTTATCTCCCTGAGGTTGCAGCTGAGCAGATTGAGAAAGCAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGAAAGCAA
18101613 GTCTTATC
1 GTCTTATC
18101621 CCTTTGAAGT
Statistics
Matches: 172, Mismatches: 39, Indels: 30
0.71 0.16 0.12
Matches are distributed among these distances:
41 28 0.16
42 4 0.02
43 5 0.03
44 97 0.56
45 35 0.20
46 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGAAAGCAA
Found at i:18101811 original size:50 final size:49
Alignment explanation
Indices: 18101655--18101811 Score: 143
Period size: 50 Copynumber: 3.1 Consensus size: 49
18101645 CTGAAGACGG
** * *
18101655 CAAATCTTACTTCCCAGGCAGTGCATTGGAACAGATTAAAGCCACAACAA
1 CAAATCTTACTT-CTTGGCAGTGCAGTGGAACAGATTAAAGCCACGACAA
* * * ** * * *
18101705 CGAATCTTACTTCTCTGACATTGCAGTTAAATAGATTGAAGCCACGATAA
1 CAAATCTTACTTCT-TGGCAGTGCAGTGGAACAGATTAAAGCCACGACAA
* * **
18101755 CGAATCTTACGTTCTTGGCAGTGCAGTGGAACAGATTAAAGCTACGACGG
1 CAAATCTTAC-TTCTTGGCAGTGCAGTGGAACAGATTAAAGCCACGACAA
18101805 CAAATCT
1 CAAATCT
18101812 CATTTCCCTG
Statistics
Matches: 82, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
49 1 0.01
50 77 0.94
51 4 0.05
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (49 bp):
CAAATCTTACTTCTTGGCAGTGCAGTGGAACAGATTAAAGCCACGACAA
Found at i:18103331 original size:5 final size:6
Alignment explanation
Indices: 18103279--18103336 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
18103269 AACAATTTAG
* * * *
18103279 TTTATC TTTATT TTTCCTT TTTATT TATATT TGTAATGT TTTATT TTTATT
1 TTTATT TTTATT TTT-ATT TTTATT TTTATT T-TTAT-T TTTATT TTTATT
18103330 TTTATT T
1 TTTATT T
18103337 GAATTCCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
6 30 0.71
7 10 0.24
8 2 0.05
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:18103370 original size:3 final size:3
Alignment explanation
Indices: 18103362--18103404 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
18103352 TTTTTAATCC
18103362 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
18103405 CCTTCTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:18105088 original size:14 final size:14
Alignment explanation
Indices: 18105061--18105178 Score: 71
Period size: 13 Copynumber: 9.3 Consensus size: 14
18105051 GGTTTCAACA
*
18105061 ATACTGTT-TTAAT
1 ATACTGTTATAAAT
*
18105074 ATACTATTATAAAT
1 ATACTGTTATAAAT
* *
18105088 ATACT-TTTTTAAT
1 ATACTGTTATAAAT
* *
18105101 ATATTGTT-TTAAT
1 ATACTGTTATAAAT
18105114 ATACTGTTATAAAT
1 ATACTGTTATAAAT
* *
18105128 ATATTGTT-TTAAT
1 ATACTGTTATAAAT
*
18105141 ATAATGTT-T---T
1 ATACTGTTATAAAT
18105151 A-ACT-TT-T-AAT
1 ATACTGTTATAAAT
18105161 ATACTGTTATAAAT
1 ATACTGTTATAAAT
18105175 ATAC
1 ATAC
18105179 ATCTAATTTG
Statistics
Matches: 85, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
8 3 0.04
9 2 0.02
10 4 0.05
11 3 0.04
12 2 0.02
13 42 0.49
14 29 0.34
ACGTcount: A:0.37, C:0.06, G:0.05, T:0.52
Consensus pattern (14 bp):
ATACTGTTATAAAT
Found at i:18105109 original size:40 final size:40
Alignment explanation
Indices: 18105065--18105152 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 40
18105055 TCAACAATAC
*
18105065 TGTTTTAATATACTATTATAAATATACTT-TTTTAATATAT
1 TGTTTTAATATACTATTATAAATATA-TTGTTTTAATATAA
*
18105105 TGTTTTAATATACTGTTATAAATATATTGTTTTAATATAA
1 TGTTTTAATATACTATTATAAATATATTGTTTTAATATAA
18105145 TGTTTTAA
1 TGTTTTAA
18105153 CTTTTAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 43 0.96
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (40 bp):
TGTTTTAATATACTATTATAAATATATTGTTTTAATATAA
Done.