Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 70 of 182
Found at i:21259221 original size:19 final size:19
Alignment explanation
Indices: 21259199--21259240 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
21259189 TCGTGTTTCT
21259199 AAAATGCTTGTATTTT-AAA
1 AAAAT-CTTGTATTTTCAAA
* *
21259218 AAAATTTTGTGTTTTCAAA
1 AAAATCTTGTATTTTCAAA
21259237 AAAA
1 AAAA
21259241 AAGAGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (19 bp):
AAAATCTTGTATTTTCAAA
Found at i:21259570 original size:85 final size:85
Alignment explanation
Indices: 21259425--21259593 Score: 329
Period size: 85 Copynumber: 2.0 Consensus size: 85
21259415 TAATTTTCTT
*
21259425 TGGATTTTCACGCAGACCTAAAATTACCTCTTTTTTAGGAAAATTTAAAAATAAATTTTTCTTCT
1 TGGATTTTCACGCAGACCTAAAATTACCTCTTTTTTAGGAAAATTTAAAAATAAAATTTTCTTCT
21259490 AAAAAGAGAATTTATTAGGC
66 AAAAAGAGAATTTATTAGGC
21259510 TGGATTTTCACGCAGACCTAAAATTACCTCTTTTTTAGGAAAATTTAAAAATAAAATTTTCTTCT
1 TGGATTTTCACGCAGACCTAAAATTACCTCTTTTTTAGGAAAATTTAAAAATAAAATTTTCTTCT
21259575 AAAAAGAGAATTTATTAGG
66 AAAAAGAGAATTTATTAGG
21259594 TGTCCGATCA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37
Consensus pattern (85 bp):
TGGATTTTCACGCAGACCTAAAATTACCTCTTTTTTAGGAAAATTTAAAAATAAAATTTTCTTCT
AAAAAGAGAATTTATTAGGC
Found at i:21259886 original size:17 final size:16
Alignment explanation
Indices: 21259864--21259922 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 16
21259854 TCGTATTTTA
21259864 TCAAAAATTTTATGTTT
1 TCAAAAATTTT-TGTTT
21259881 TCAAAAAAATTTTGTGTTT
1 TC--AAAAATTTT-TGTTT
*
21259900 T-AAAAATTTTCGTGTT
1 TCAAAAATTTTTGT-TT
21259916 TCAAAAA
1 TCAAAAA
21259923 GAAAATTCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 2 0.06
16 12 0.33
17 7 0.19
19 15 0.42
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (16 bp):
TCAAAAATTTTTGTTT
Found at i:21259888 original size:19 final size:18
Alignment explanation
Indices: 21259866--21259905 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
21259856 GTATTTTATC
21259866 AAAAATTTTATGTTTTCAA
1 AAAAATTTTATGTTTT-AA
*
21259885 AAAAATTTTGTGTTTTAA
1 AAAAATTTTATGTTTTAA
21259903 AAA
1 AAA
21259906 TTTTCGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (18 bp):
AAAAATTTTATGTTTTAA
Found at i:21259933 original size:20 final size:19
Alignment explanation
Indices: 21259908--21259960 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
21259898 TTTAAAAATT
21259908 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAA-AAAA
**
21259928 TTCGTGTTTC-CTAAAAAA
1 TTCGTGTTTCAAAAAAAAA
21259946 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
21259961 TTTTCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TTCGTGTTTCAAAAAAAAA
Found at i:21260023 original size:18 final size:19
Alignment explanation
Indices: 21260002--21260038 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21259992 TCTAAAATGC
21260002 TTGTATTTT-AAAAAAAAA
1 TTGTATTTTCAAAAAAAAA
*
21260020 TTGTGTTTTCAAAAAAAAA
1 TTGTATTTTCAAAAAAAAA
21260039 AGGAAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
TTGTATTTTCAAAAAAAAA
Found at i:21271944 original size:69 final size:69
Alignment explanation
Indices: 21271770--21271944 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
21271760 CTTTCCAAGG
* ** *
21271770 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
21271835 TTTT
66 TTTT
* ** * *
21271839 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
21271904 TGTTTT
64 TGTTTT
** *
21271910 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
21271945 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:21272234 original size:148 final size:147
Alignment explanation
Indices: 21271948--21272293 Score: 441
Period size: 148 Copynumber: 2.3 Consensus size: 147
21271938 TAAGCCTTTT
* *
21271948 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTG-GTTGAGCCTCAGGACACGCTGAGG
1 AATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
21272012 TAATTTTAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 TAATTTTAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
21272077 GATACGCTGAGGTAATTTC
129 GATACGCTGAGGTAATTTC
* ** *
21272096 AATTTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTTTGTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
* * **
21272161 T-ATTTTCAATTTCTGTT-TT-CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-G
65 TAATTTT-AATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
* *
21272222 GTTCACATGCTGAGGTATTTTC
129 GAT-AC--GCTGAGGTAATTTC
* *
21272244 AATTTCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTTTGTTTT---CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
21272294 GTCAGATTAC
Statistics
Matches: 172, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
145 3 0.02
146 39 0.23
147 9 0.05
148 57 0.33
149 33 0.19
150 27 0.16
151 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (147 bp):
AATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTTAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
TACGCTGAGGTAATTTC
Found at i:21272269 original size:76 final size:74
Alignment explanation
Indices: 21271962--21272298 Score: 423
Period size: 76 Copynumber: 4.5 Consensus size: 74
21271952 TTTGTTTTTC
*
21271962 AAAATCAACTCATATTGCTAGAGGTG-GTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTC
21272025 TGTTGTTAAAAAA
65 TGTT-TT--AAAA
** * * *
21272038 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGATACGCTGAGGTAATTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
21272103 GTTTT--CA
66 GTTTTAAAA
* * ** * *
21272110 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
21272175 GTTTTCAAA
66 GTTTTAAAA
* *
21272184 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
21272248 TCTGTTTTAAAA
63 TCTGTTTTAAAA
*
21272260 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCGTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
21272299 ATTACACACT
Statistics
Matches: 229, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
72 64 0.28
73 1 0.00
74 35 0.15
76 95 0.41
77 34 0.15
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAA
Found at i:21272835 original size:73 final size:72
Alignment explanation
Indices: 21272708--21272904 Score: 279
Period size: 73 Copynumber: 2.7 Consensus size: 72
21272698 TCAACTCATA
* * * * *
21272708 TTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTCGAGCCTCAAGACACGTTGAGGTAT
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
21272773 TTTCAAT
66 TTTCAAT
*
21272780 TTCTGCTTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTA
1 TTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTA
21272845 ATTTCAAT
65 ATTTCAAT
* *
21272853 TTCTGTTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
21272905 TTCACATGTT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
72 8 0.07
73 70 0.62
74 34 0.30
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (72 bp):
TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
TTTCAAT
Found at i:21274168 original size:5 final size:5
Alignment explanation
Indices: 21274158--21274209 Score: 65
Period size: 5 Copynumber: 11.0 Consensus size: 5
21274148 AAGCCAAAGG
* *
21274158 GAGAA GAGAA GAGAA G-GAA GAGAA -A-AA GGGAA GAGAA AAGAA GAGAA
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA
21274205 GAGAA
1 GAGAA
21274210 CGCCGAGACT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 2 0.05
4 5 0.12
5 33 0.82
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
GAGAA
Found at i:21274771 original size:17 final size:16
Alignment explanation
Indices: 21274749--21274807 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 16
21274739 TCGTATTTTA
21274749 TCAAAAATTTTATGTTT
1 TCAAAAATTTT-TGTTT
21274766 TCAAAAAAATTTTGTGTTT
1 TC--AAAAATTTT-TGTTT
*
21274785 T-AAAAATTTTCGTGTT
1 TCAAAAATTTTTGT-TT
21274801 TCAAAAA
1 TCAAAAA
21274808 GAAAATTCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 2 0.06
16 12 0.33
17 7 0.19
19 15 0.42
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (16 bp):
TCAAAAATTTTTGTTT
Found at i:21274773 original size:19 final size:18
Alignment explanation
Indices: 21274751--21274790 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
21274741 GTATTTTATC
21274751 AAAAATTTTATGTTTTCAA
1 AAAAATTTTATGTTTT-AA
*
21274770 AAAAATTTTGTGTTTTAA
1 AAAAATTTTATGTTTTAA
21274788 AAA
1 AAA
21274791 TTTTCGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (18 bp):
AAAAATTTTATGTTTTAA
Found at i:21274818 original size:20 final size:19
Alignment explanation
Indices: 21274793--21274845 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
21274783 TTTAAAAATT
21274793 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAA-AAAA
**
21274813 TTCGTGTTTC-CTAAAAAA
1 TTCGTGTTTCAAAAAAAAA
21274831 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
21274846 TTTTCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TTCGTGTTTCAAAAAAAAA
Found at i:21274830 original size:56 final size:55
Alignment explanation
Indices: 21274764--21274884 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 55
21274754 AATTTTATGT
* * *
21274764 TTTCAAAAAAATTTTGTGTTTTAAAAATTTTCGTGTTTCAAAAAGAAA-A-TTCGTG
1 TTTCTAAAAAATCTCGTG-TTTAAAAATTTTCGTGTTTCAAAAA-AAAGAGTTCGTG
* * *
21274819 TTTCCTAAAAAATCTCGTGTTTCAAAATTTTCGTTTTTTAAAAAAAAGAGTTTCGTG
1 TTT-CTAAAAAATCTCGTGTTTAAAAATTTTCGTGTTTCAAAAAAAAGAG-TTCGTG
21274876 TTTCTAAAA
1 TTTCTAAAA
21274885 TGCTTGTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
54 3 0.05
55 26 0.46
56 18 0.32
57 9 0.16
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (55 bp):
TTTCTAAAAAATCTCGTGTTTAAAAATTTTCGTGTTTCAAAAAAAAGAGTTCGTG
Found at i:21274903 original size:19 final size:19
Alignment explanation
Indices: 21274881--21274922 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
21274871 TCGTGTTTCT
21274881 AAAATGCTTGTATTTT-AAA
1 AAAAT-CTTGTATTTTCAAA
* *
21274900 AAAATTTTGTGTTTTCAAA
1 AAAATCTTGTATTTTCAAA
21274919 AAAA
1 AAAA
21274923 AAGAGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (19 bp):
AAAATCTTGTATTTTCAAA
Found at i:21280577 original size:38 final size:35
Alignment explanation
Indices: 21280496--21280581 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 35
21280486 AAAATAAAAA
* * *
21280496 AATATATAAATAATATAGTATTAAAGATGTATACAT
1 AATATATAAA-AATACAATATTAAAGATATATACAT
* *
21280532 AACATATAAAAATACAATATTAAATGATATATATATGT
1 AATATATAAAAATACAATATTAAA-GATATATACA--T
21280570 AATATATAAAAA
1 AATATATAAAAA
21280582 AATGTATACA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
35 12 0.29
36 17 0.41
38 12 0.29
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (35 bp):
AATATATAAAAATACAATATTAAAGATATATACAT
Found at i:21280607 original size:25 final size:27
Alignment explanation
Indices: 21280579--21280632 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
21280569 TAATATATAA
*
21280579 AAAAATGTATACATA-ATATA-ATATT
1 AAAAATATATACATAGATATACATATT
*
21280604 AAAAATATTTACATAGTATATACATATT
1 AAAAATATATACATAG-ATATACATATT
21280632 A
1 A
21280633 GAGATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 13 0.54
27 5 0.21
28 6 0.25
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (27 bp):
AAAAATATATACATAGATATACATATT
Found at i:21285702 original size:47 final size:46
Alignment explanation
Indices: 21285633--21285725 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 46
21285623 TTCAATGTCA
21285633 CCCAGGATCCTCATTGGTCTCGAGGGATCAAAAACCGAGATTTTAG
1 CCCAGGATCCTCATTGGTCTCGAGGGATCAAAAACCGAGATTTTAG
* *
21285679 NCCCAGGATCCTCATTGGTCTCGAGGTATCAAAACCCGAGATTTTAG
1 -CCCAGGATCCTCATTGGTCTCGAGGGATCAAAAACCGAGATTTTAG
21285726 TGGAGTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (46 bp):
CCCAGGATCCTCATTGGTCTCGAGGGATCAAAAACCGAGATTTTAG
Found at i:21303276 original size:26 final size:27
Alignment explanation
Indices: 21303247--21303301 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
21303237 TGAATACTTA
*
21303247 ATTTTAATATACATATTT-AAATTTTT
1 ATTTTAATATAAATATTTAAAATTTTT
* *
21303273 ATTTTATTATAAATTTTTAGAAATTTTT
1 ATTTTAATATAAATATTTA-AAATTTTT
21303301 A
1 A
21303302 GAAATCTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.62
28 9 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (27 bp):
ATTTTAATATAAATATTTAAAATTTTT
Found at i:21305948 original size:130 final size:130
Alignment explanation
Indices: 21305753--21306013 Score: 486
Period size: 130 Copynumber: 2.0 Consensus size: 130
21305743 GAGGGTGCTA
21305753 ATCATTCCTCGTGCGTAACCGACTCCCGAACCCGTTTTCTGAATTCCGTAGACCAAAATCATTGT
1 ATCATTCCTCGTGCGTAACCGACTCCCGAACCCGTTTTCTGAATTCCGTAGACCAAAATCATTGT
* *
21305818 TTTGATAAAAATTAAATCGGTTATTAAAAACAACTACTTTTCGAGGTGACCCGATCACACCTCAC
66 TTCGATAAAAATTAAATCGGTTATTAAAAACAACTACTTTTCGAGGTGACCCGATCAAACCTCAC
*
21305883 ATCATTCCTCGTGCGTAACCGACTCCCGAACCCGTTTTCTGAATTCCGTAGACCAAAATCGTTGT
1 ATCATTCCTCGTGCGTAACCGACTCCCGAACCCGTTTTCTGAATTCCGTAGACCAAAATCATTGT
*
21305948 TTCGATAAAAATTAAATCGGTTTTTAAAAACAACTACTTTTCGAGGTGACCCGATCAAACCTCAC
66 TTCGATAAAAATTAAATCGGTTATTAAAAACAACTACTTTTCGAGGTGACCCGATCAAACCTCAC
21306013 A
1 A
21306014 ACAAAAAAAG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (130 bp):
ATCATTCCTCGTGCGTAACCGACTCCCGAACCCGTTTTCTGAATTCCGTAGACCAAAATCATTGT
TTCGATAAAAATTAAATCGGTTATTAAAAACAACTACTTTTCGAGGTGACCCGATCAAACCTCAC
Found at i:21309179 original size:45 final size:46
Alignment explanation
Indices: 21309126--21309225 Score: 127
Period size: 45 Copynumber: 2.2 Consensus size: 46
21309116 TCAAAAGGAA
21309126 AATG-AAAAAATCAAAAATCAAAAT-AAAAAAACAAAAA-AAAGAAAG
1 AATGAAAAAAATC-AAAATCAAAATGAAAAAAACAAAAAGAAAG-AAG
** *
21309171 AA-GAAAAAAATCAAAATCAAAATGAAAATGAGAAAAAGAAAGAAG
1 AATGAAAAAAATCAAAATCAAAATGAAAAAAACAAAAAGAAAGAAG
21309216 AATGAAAAAA
1 AATGAAAAAA
21309226 GAGAAATCTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 12 0.25
45 25 0.52
46 11 0.23
ACGTcount: A:0.75, C:0.05, G:0.11, T:0.09
Consensus pattern (46 bp):
AATGAAAAAAATCAAAATCAAAATGAAAAAAACAAAAAGAAAGAAG
Found at i:21310151 original size:13 final size:13
Alignment explanation
Indices: 21310133--21310158 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21310123 GAGTCAAAAA
21310133 AAAATGAAAAATG
1 AAAATGAAAAATG
21310146 AAAATGAAAAATG
1 AAAATGAAAAATG
21310159 GAGAGGCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:21311552 original size:44 final size:43
Alignment explanation
Indices: 21311502--21311788 Score: 192
Period size: 44 Copynumber: 6.6 Consensus size: 43
21311492 CGAGGACACT
*
21311502 ATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAATAAAGG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA-G
* ** * *
21311546 ATCCTATCTCTCTGAAGTTACAGCAGAGCAGG--TCACATAAAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGC-GGATTAAAATAAAG
* * * * *
21311588 CT-TTATCTCCCTGAAGTTACAGTGGGGCAGG-TTGAATATGCAAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGC-GGATT-AAAAT-AAAG
* * ** **
21311632 -TCCTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATTTCAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-TAAAG
* * * * ** *
21311677 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGGAGCTAGTA-
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATT-AAAATA-AAG
21311721 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA-G
*
21311765 AT-CTCATCTCTCTGAAGTTACAGT
1 ATCCT-ATCTCCCTGAAGTTACAGT
21311789 AGAGTAGATC
Statistics
Matches: 186, Mismatches: 42, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
41 24 0.13
42 4 0.02
43 18 0.10
44 104 0.56
45 6 0.03
46 30 0.16
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
Found at i:21311690 original size:46 final size:46
Alignment explanation
Indices: 21311635--21311909 Score: 180
Period size: 46 Copynumber: 6.2 Consensus size: 46
21311625 ATGCAAGTCC
*
21311635 TATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATTTCAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
* ** * * * *
21311681 TATCTCCCTGAGGTTACAGTGGAGCAGATTGGAG-CTAGT-A-ATCC
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT-TTCAGATCT
* ** ** **
21311725 TATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
* * * * * * *
21311769 CATCTCTCTGAAGTTACAGTAGAGTAGATCG-CG----TCAGGTCT
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
* *
21311810 TATCTCCCTAAGGTTACAGTGGAGTAAACCGAAGAATTTCAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
* ** *
21311856 TATCTCCCTGAGGTTACAGTGGAGCAGGTCGAAG-ATAGT-AGATCT
1 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT-TTCAGATCT
21311901 TATCTCCCT
1 TATCTCCCT
21311910 AAGCAGTAGT
Statistics
Matches: 174, Mismatches: 42, Indels: 27
0.72 0.17 0.11
Matches are distributed among these distances:
41 28 0.16
42 3 0.02
43 2 0.01
44 55 0.32
45 19 0.11
46 67 0.39
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (46 bp):
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
Found at i:21311923 original size:219 final size:218
Alignment explanation
Indices: 21311502--21311928 Score: 505
Period size: 219 Copynumber: 1.9 Consensus size: 218
21311492 CGAGGACACT
*
21311502 ATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTAC
* ** * **
21311567 AGCAGAGCAGGTCACATAAAGCTTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCAAG
66 AGCAGAGCAGATCACATAAAGCTTTATCTCCCTGAAGTTACAGTGGGAAACGAAGAATATGCAAG
* * *
21311632 TCCTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTA
131 TCCTATCTCCCTGAGGTTACAGTGGAGAGGACCGAAGAATGTCAGATCTTATCTCCCTAAGGTTA
21311697 CAGTGGAGCAGATTGGAGCTAGTA
196 -AGTGGAGCAGATTGGAGCTAGTA
21311721 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGAT-CTCATCTCTCTGAAGTTA
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCCT-ATCTCTCTGAAGTTA
* * * * * *
21311785 CAGTAGAGTAGATCGCGT-CAGGTCTTATCTCCCT-AAGGTTACAGTGGAGTAAACCGAAGAAT-
65 CAGCAGAGCAGATCACATAAAGCT-TTATCTCCCTGAA-GTTACAGTGG-G-AAA-CGAAGAATA
* * *
21311847 TTC-AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGG-TCGAAG-ATAGT-AGATCTTATCTCC
125 TGCAAG-TCCTATCTCCCTGAGGTTACAGTGGAG-AGGACCGAAGAAT-GTCAGATCTTATCTCC
21311908 CTAAGCAG-T-AGTGGAGCAGAT
187 CTAAG--GTTAAGTGGAGCAGAT
21311929 CGAAAATGGC
Statistics
Matches: 178, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
218 7 0.04
219 105 0.59
220 22 0.12
221 36 0.20
222 8 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (218 bp):
ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTAC
AGCAGAGCAGATCACATAAAGCTTTATCTCCCTGAAGTTACAGTGGGAAACGAAGAATATGCAAG
TCCTATCTCCCTGAGGTTACAGTGGAGAGGACCGAAGAATGTCAGATCTTATCTCCCTAAGGTTA
AGTGGAGCAGATTGGAGCTAGTA
Found at i:21311932 original size:44 final size:43
Alignment explanation
Indices: 21311873--21312054 Score: 174
Period size: 44 Copynumber: 4.3 Consensus size: 43
21311863 CTGAGGTTAC
* *
21311873 AGTGGAGCAGGTCGAAGATAGTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCGAAGATAGCAG-TCTTATCTCCCTAAGCAGT
* * * * *
21311917 AGTGGAGCAGATCGAAAATGGCAAATCTCATCTTCCTAAGCAGT
1 AGTGGAGCAGATCGAAGATAGC-AGTCTTATCTCCCTAAGCAGT
* ** ** * *
21311961 AGTGAAGCAGATTTAAGCCACCAGTCTTATCTCCCTAAACAGT
1 AGTGGAGCAGATCGAAGATAGCAGTCTTATCTCCCTAAGCAGT
*
21312004 AGTGGAGCAGATCG--CAT--CAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCGAAGATAGC-AGTCTTATCTCCCTAAGCAGT
21312044 AGTGGAGCAGA
1 AGTGGAGCAGA
21312055 CAAAAGAAAC
Statistics
Matches: 110, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
39 1 0.01
40 31 0.28
43 28 0.25
44 49 0.45
45 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (43 bp):
AGTGGAGCAGATCGAAGATAGCAGTCTTATCTCCCTAAGCAGT
Found at i:21312004 original size:87 final size:83
Alignment explanation
Indices: 21311898--21312054 Score: 224
Period size: 87 Copynumber: 1.8 Consensus size: 83
21311888 AGATAGTAGA
* *
21311898 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAAATCTCATCTTCCTAAGCAGTAG
1 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCG--AAT--CAAATCTCATCTCCCTAAGCAGTAG
21311963 TGAAGCAGATTTAAGCCACCAG
62 TGAAGCAGATTTAAGCCACCAG
* * * *
21311985 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAATCAAATCTCATCTCCCTAAGCAGTAGTGAA
21312050 GCAGA
66 GCAGA
21312055 CAAAAGAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
83 30 0.47
85 2 0.03
87 32 0.50
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (83 bp):
TCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAATCAAATCTCATCTCCCTAAGCAGTAGTGAA
GCAGATTTAAGCCACCAG
Found at i:21312038 original size:40 final size:41
Alignment explanation
Indices: 21311898--21312054 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 41
21311888 AGATAGTAGA
* *
21311898 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-ACAT--CAAG
* * * * * *
21311942 TCTCATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCA-CCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CGACATCAAG
*
21311985 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCG-CATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACATCAAG
21312025 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
21312055 CAAAAGAAAC
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 2 0.02
40 33 0.35
41 1 0.01
43 28 0.30
44 27 0.29
46 2 0.02
47 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (41 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACATCAAG
Found at i:21316021 original size:19 final size:19
Alignment explanation
Indices: 21315997--21316035 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
21315987 TATCTTTTCA
21315997 AAGGGAAGAAGGGGTGATT
1 AAGGGAAGAAGGGGTGATT
*
21316016 AAGGGAAGAATGGGTGATT
1 AAGGGAAGAAGGGGTGATT
21316035 A
1 A
21316036 GAGTCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.18
Consensus pattern (19 bp):
AAGGGAAGAAGGGGTGATT
Found at i:21317494 original size:46 final size:46
Alignment explanation
Indices: 21317427--21317611 Score: 298
Period size: 46 Copynumber: 4.0 Consensus size: 46
21317417 ACATTGCTAT
* * * **
21317427 AACTCAATATGGCTTTCTTCACGGAATTACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
21317473 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTAATTTTCAT
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
21317519 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
21317565 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
21317611 A
1 A
21317612 CTTTGTCATG
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
Found at i:21318882 original size:16 final size:17
Alignment explanation
Indices: 21318836--21318883 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
21318826 AAATTCTTTT
*
21318836 TAAACCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
21318853 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
21318870 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
21318884 TTCTAAATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.25
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:21320453 original size:25 final size:29
Alignment explanation
Indices: 21320419--21320494 Score: 115
Period size: 25 Copynumber: 2.7 Consensus size: 29
21320409 ATATTTATGG
21320419 AAAGTCAAAGATATGGGTATC-AA-A-T-
1 AAAGTCAAAGATATGGGTATCAAATATTA
21320444 AAAGTCAAAGATATGGGTATCAAATATTA
1 AAAGTCAAAGATATGGGTATCAAATATTA
21320473 GAAAGTCAAAGATATGGGTATC
1 -AAAGTCAAAGATATGGGTATC
21320495 GAGATATTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
25 21 0.46
26 2 0.04
27 1 0.02
28 1 0.02
30 21 0.46
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.25
Consensus pattern (29 bp):
AAAGTCAAAGATATGGGTATCAAATATTA
Found at i:21321196 original size:14 final size:16
Alignment explanation
Indices: 21321167--21321205 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
21321157 TTTTAAATAG
21321167 TTTAATATTAAATTTT
1 TTTAATATTAAATTTT
21321183 TTTAAT-TT-AATTTT
1 TTTAATATTAAATTTT
21321197 TTTAA-ATTA
1 TTTAATATTA
21321206 TTAACTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 13 0.62
15 2 0.10
16 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTAATATTAAATTTT
Found at i:21323081 original size:25 final size:25
Alignment explanation
Indices: 21323024--21323086 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 25
21323014 GGGTTTTTAA
*
21323024 TATTAATATAATA--ATTTAAATAT
1 TATTAATCTAATATTATTTAAATAT
*
21323047 TATTAATCTATTATTATTTAAA-A-
1 TATTAATCTAATATTATTTAAATAT
21323070 TATTAATGTCTAATATT
1 TATTAA--TCTAATATT
21323087 TATGTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 17 0.52
24 1 0.03
25 15 0.45
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTAATCTAATATTATTTAAATAT
Found at i:21323925 original size:14 final size:15
Alignment explanation
Indices: 21323899--21323928 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
21323889 ATGCATTAGA
21323899 TTAATTAAAATAAAT
1 TTAATTAAAATAAAT
21323914 TTAATT-AAATAAAT
1 TTAATTAAAATAAAT
21323928 T
1 T
21323929 ATTTCAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTAATTAAAATAAAT
Found at i:21330328 original size:30 final size:32
Alignment explanation
Indices: 21330292--21330353 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
21330282 AATCAGAATC
21330292 TATAATA-AAAATTATATAAAA-GAAT-TATTT
1 TATAATATAAAATT-TATAAAAGGAATATATTT
21330322 TATAATATAAAATTTATAAAAGGAATATATTT
1 TATAATATAAAATTTATAAAAGGAATATATTT
21330354 ATTTCACCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 14 0.48
31 10 0.34
32 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (32 bp):
TATAATATAAAATTTATAAAAGGAATATATTT
Found at i:21338510 original size:16 final size:16
Alignment explanation
Indices: 21338474--21338504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21338464 TAAAATATAT
*
21338474 TATTATTTAAATAAAG
1 TATTAATTAAATAAAG
21338490 TATTAATTAAATAAA
1 TATTAATTAAATAAA
21338505 TAATTATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TATTAATTAAATAAAG
Found at i:21338901 original size:43 final size:43
Alignment explanation
Indices: 21338818--21338957 Score: 117
Period size: 43 Copynumber: 3.3 Consensus size: 43
21338808 CCGGAAAAAA
* * *
21338818 CGCCGCTAAAAACCAAGACCTTTAGCGGCGCTT-TTCCCACAAAT
1 CGCCGCT-AAAATCAAGACCTTTAGCGACACTTCTTCCCAC-AAT
*
21338862 -GCCGCTATAAATCACGACCTTTAGCGACACTTCTT-CCACAAT
1 CGCCGCTA-AAATCAAGACCTTTAGCGACACTTCTTCCCACAAT
* * * * * * *
21338904 CGACGCTAAAGATCATGACCTTTAGTGATACTTC-TCGCAAAAA
1 CGCCGCTAAA-ATCAAGACCTTTAGCGACACTTCTTCCCACAAT
21338947 CGCCGCTAAAA
1 CGCCGCTAAAA
21338958 CATAACCTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
42 8 0.10
43 69 0.87
44 2 0.03
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAATCAAGACCTTTAGCGACACTTCTTCCCACAAT
Found at i:21339260 original size:34 final size:35
Alignment explanation
Indices: 21339216--21339281 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
21339206 CTATGAAAAT
21339216 TTTAACTTTAAAA-CTAAATATAA-AAATTAATGAA
1 TTTAACTTTAAAATCTAAA-ATAATAAATTAATGAA
* *
21339250 TTTAATTTTAAAATTTAAAATAATAAATTAAT
1 TTTAACTTTAAAATCTAAAATAATAAATTAAT
21339282 AACACAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (35 bp):
TTTAACTTTAAAATCTAAAATAATAAATTAATGAA
Found at i:21341600 original size:45 final size:45
Alignment explanation
Indices: 21341529--21341618 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
21341519 ATGCCTCGAG
21341529 AGATTAGAATATGATCCAGCTCATGTTGTTGCCTAACAAAATACT
1 AGATTAGAATATGATCCAGCTCATGTTGTTGCCTAACAAAATACT
* *
21341574 AGATTAGAATATGATCCAGTTTATGTTGTTGCCTAACAAAATACT
1 AGATTAGAATATGATCCAGCTCATGTTGTTGCCTAACAAAATACT
21341619 TTGAGATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (45 bp):
AGATTAGAATATGATCCAGCTCATGTTGTTGCCTAACAAAATACT
Found at i:21344407 original size:41 final size:41
Alignment explanation
Indices: 21344299--21344410 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 41
21344289 AGATTTTATT
** * **
21344299 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCTTGAGC
1 ATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCCGAGC
* *
21344340 TTTAGCGGC-ATTTCCCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCCGAGC
21344380 ATTAGCGGCGCTTTCCCAAAAACGCCGCTAA
1 ATTAGCGGCGCTTTCCCAAAAACGCCGCTAA
21344411 TACTTATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 33 0.54
41 28 0.46
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (41 bp):
ATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCCGAGC
Found at i:21344471 original size:40 final size:40
Alignment explanation
Indices: 21344402--21344513 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
21344392 TTCCCAAAAA
* *
21344402 CGCCGCTAATACT-TATTTTTAGCGGCGTTTTTCAG-AATG
1 CGCCGCTAATACTCGATTTTTAGCGGCGTTTTTC-GTAAAG
* *
21344441 CGCCGCTAATACTCGATCTTTAGCGGCGTTTTACGTAAAG
1 CGCCGCTAATACTCGATTTTTAGCGGCGTTTTTCGTAAAG
* *
21344481 CGCCGCTAATGCTCGATTTTTAGTGGCGTTTTT
1 CGCCGCTAATACTCGATTTTTAGCGGCGTTTTT
21344514 TATCCAAACG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 14 0.22
40 49 0.78
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (40 bp):
CGCCGCTAATACTCGATTTTTAGCGGCGTTTTTCGTAAAG
Found at i:21353611 original size:3 final size:3
Alignment explanation
Indices: 21353605--21353639 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
21353595 TCCTCCTCCT
*
21353605 CCA CCA CCA CCA CCA CCA CCA CCC CCA CCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
21353640 TCCTCCTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.71, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:21357546 original size:13 final size:13
Alignment explanation
Indices: 21357530--21357555 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21357520 AATAGATATG
21357530 GATAACAAATACA
1 GATAACAAATACA
21357543 GATAACAAATACA
1 GATAACAAATACA
21357556 AATTTACAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.08, T:0.15
Consensus pattern (13 bp):
GATAACAAATACA
Found at i:21361710 original size:9 final size:9
Alignment explanation
Indices: 21361693--21361729 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
21361683 TGAGTTTTCG
21361693 AATTCGAAT
1 AATTCGAAT
*
21361702 AACTCGAAT
1 AATTCGAAT
21361711 AATTCGAAT
1 AATTCGAAT
21361720 AATTCGAAT
1 AATTCGAAT
21361729 A
1 A
21361730 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:21366316 original size:107 final size:107
Alignment explanation
Indices: 21366130--21366345 Score: 371
Period size: 107 Copynumber: 2.0 Consensus size: 107
21366120 AAGAAAAAAA
* *
21366130 AAGCATTAATTATAGTAATATTGCCATATTGATAAAAATTATAATTAATGCATTATTTTTTAATC
1 AAGCATTAATTAAAGTAATATTGCCATATTGATAAAAAATATAATTAATGCATTATTTTTTAATC
* *
21366195 CAATTAAATTAATATTAAATACATATTTT-TAGAAATGGTAAT
66 CAATTAAATCAATATTAAATACATATTTTCTA-AAATGATAAT
*
21366237 AAGCATTAATTAAAGTAATATTGCTATATTGATAAAAAATATAATTAATGCATTATTTTTTAATC
1 AAGCATTAATTAAAGTAATATTGCCATATTGATAAAAAATATAATTAATGCATTATTTTTTAATC
21366302 CAATTAAATCAATATTAAATACATATTTTCTAAAATGATAAT
66 CAATTAAATCAATATTAAATACATATTTTCTAAAATGATAAT
21366344 AA
1 AA
21366346 AATAATGTAT
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
107 101 0.98
108 2 0.02
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (107 bp):
AAGCATTAATTAAAGTAATATTGCCATATTGATAAAAAATATAATTAATGCATTATTTTTTAATC
CAATTAAATCAATATTAAATACATATTTTCTAAAATGATAAT
Found at i:21374559 original size:2 final size:2
Alignment explanation
Indices: 21374544--21374579 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
21374534 GTTTGTACAT
*
21374544 TA TA TA CA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21374580 TTGAAGGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:21379784 original size:21 final size:21
Alignment explanation
Indices: 21379758--21379798 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21379748 AGACGAGCAA
* *
21379758 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
21379779 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
21379799 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:21381737 original size:16 final size:16
Alignment explanation
Indices: 21381704--21381737 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
21381694 GGAGATTGTT
* *
21381704 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
21381720 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
21381736 AA
1 AA
21381738 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:21387478 original size:18 final size:19
Alignment explanation
Indices: 21387440--21387476 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
21387430 TAATAAACAT
*
21387440 TAAAAAATTATTTTAAAAA
1 TAAAAAAATATTTTAAAAA
21387459 TAAAAAAATATTTTAAAA
1 TAAAAAAATATTTTAAAA
21387477 TACTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAAAAATATTTTAAAAA
Found at i:21388959 original size:21 final size:22
Alignment explanation
Indices: 21388935--21388989 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
21388925 TAGGGATCCT
*
21388935 ACACGGGCGTGTGTT-TTG-GAC
1 ACACGGGCGTGTGTTGATGAG-C
*
21388956 ACACGGTCGTGT-TTGATGAGC
1 ACACGGGCGTGTGTTGATGAGC
21388977 ACACGGGCGTGTG
1 ACACGGGCGTGTG
21388990 AGACCCTCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.16, C:0.20, G:0.38, T:0.25
Consensus pattern (22 bp):
ACACGGGCGTGTGTTGATGAGC
Found at i:21390916 original size:19 final size:19
Alignment explanation
Indices: 21390856--21390918 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
21390846 ATAATATTAC
21390856 TATTATTAAATTCAT-A-T
1 TATTATTAAATTCATCATT
* *
21390873 TATTAAATTTAACTTGA-CATAT
1 TATT--A-TTAAATTCATCAT-T
21390895 TATTATTAAATTCATCATT
1 TATTATTAAATTCATCATT
21390914 TATTA
1 TATTA
21390919 ATATATTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 4 0.11
19 14 0.40
20 12 0.34
22 5 0.14
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.51
Consensus pattern (19 bp):
TATTATTAAATTCATCATT
Found at i:21394106 original size:15 final size:15
Alignment explanation
Indices: 21394088--21394120 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
21394078 TTATTTTTGC
21394088 TTTTATTTT-CTCCCT
1 TTTTATTTTACT-CCT
21394103 TTTTATTTTACTCCT
1 TTTTATTTTACTCCT
21394118 TTT
1 TTT
21394121 CAATTTGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTTTACTCCT
Found at i:21394621 original size:16 final size:16
Alignment explanation
Indices: 21394597--21394637 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
21394587 TATTTTATCT
*
21394597 TTTATTTTGTTTATTTA
1 TTTA-TTTGTTCATTTA
21394614 TTTATTTGTTCATTTA
1 TTTATTTGTTCATTTA
21394630 TTTATTTG
1 TTTATTTG
21394638 CCTATCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.73
Consensus pattern (16 bp):
TTTATTTGTTCATTTA
Found at i:21396190 original size:44 final size:45
Alignment explanation
Indices: 21396095--21396447 Score: 188
Period size: 44 Copynumber: 7.7 Consensus size: 45
21396085 TCTTATCTCT
* *
21396095 CTGAAGTTGCAGTGGAATAGATTAAAGCTACGAATAT-C-AT-CTCC
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTAC-AA-ATCCTATACTCC
* *
21396139 CTAAAGTTGCAATGGAGTAGATTGAAGCTACAAATCCTATAC-CC
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCCTATACTCC
* * * * * ** *
21396183 TTGAAGTTACAATGG-GTCGGATTAAATATATCATAGTTAACCT-TATCTCC
1 CTGAAGTTGCAGTGGAGT-AGATTGAAGCTA-CA-A---ATCCTATA-CTCC
* *
21396233 CTGAAGTTGCAGTGGAGCAGATTGACGCTACAAATCCTATAC-CC
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCCTATACTCC
* * * * * *
21396277 TTGAAGTTGTAGTGG-GTCGGATTAAATCTACCATAGCAAACCT-TATCTCC
1 CTGAAGTTGCAGTGGAGT-AGATTGAAGCTA-C--A--AATCCTATA-CTCC
* * * *
21396327 CTGAAGTTGCAATGGAGCAGATTGAAGCTACGAATCTTAT-CTCC
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCCTATACTCC
* * * * **
21396371 CTGAAGTTGTAGTGGAGCAAATTGAAGCTACAATTCCTATAC-GA
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCCTATACTCC
* * *
21396415 CTGAAGTTACAGTGGATTAGAATGAAGCTACAA
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAA
21396448 CAACAAATCT
Statistics
Matches: 231, Mismatches: 54, Indels: 48
0.69 0.16 0.14
Matches are distributed among these distances:
42 2 0.01
43 6 0.03
44 139 0.60
45 14 0.06
46 4 0.02
47 1 0.00
48 5 0.02
49 14 0.06
50 44 0.19
51 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (45 bp):
CTGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCCTATACTCC
Found at i:21396376 original size:94 final size:94
Alignment explanation
Indices: 21396133--21396385 Score: 364
Period size: 94 Copynumber: 2.7 Consensus size: 94
21396123 TACGAATATC
* * ** *
21396133 ATCTCCCTAAAGTTGCAATGGAGTAGATTGAAGCTACAAATCCTATACCCTTGAAGTTACAATGG
1 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACAAATCCTATACCCTTGAAGTTGTAGTGG
* **
21396198 GTCGGATTAAATATATCATAGTTAACCTT
66 GTCGGATTAAATATACCATAGCAAACCTT
* *
21396227 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGACGCTACAAATCCTATACCCTTGAAGTTGTAGTGG
1 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACAAATCCTATACCCTTGAAGTTGTAGTGG
*
21396292 GTCGGATTAAATCTACCATAGCAAACCTT
66 GTCGGATTAAATATACCATAGCAAACCTT
* * *
21396321 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACGAATCTTAT-CTCCCTGAAGTTGTAGTG
1 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACAAATCCTATAC-CCTTGAAGTTGTAGTG
21396385 G
65 G
21396386 AGCAAATTGA
Statistics
Matches: 142, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 1 0.01
94 141 0.99
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (94 bp):
ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACAAATCCTATACCCTTGAAGTTGTAGTGG
GTCGGATTAAATATACCATAGCAAACCTT
Found at i:21396462 original size:232 final size:232
Alignment explanation
Indices: 21396030--21396475 Score: 513
Period size: 232 Copynumber: 1.9 Consensus size: 232
21396020 TAGTAAAACC
* ** * *
21396030 ACAAATCATATACCCCTGAAATTGCAGTGGGTCGAATTGAAGTCACCATAGTGAATCTTATCTCT
1 ACAAATCATATACCCCTGAAATTGCAGTGGGTCGAATTGAAATCACCATAGCAAACCTTATCTCC
* * * *
21396095 CTGAAGTTGCAGTGGAATAGATTAAAGCTACGAATATCATCTCCCTAAAGTTGCAATGGAGTAGA
66 CTGAAGTTGCAATGGAACAGATTAAAGCTACGAATATCATCTCCCTAAAGTTGCAATGGAGCAAA
* * * * * * **
21396160 TTGAAGCTACAAATCCTATACCCTTGAAGTTACAATGGGTCGGATTAAATATATCATAGTTAACC
131 TTGAAGCTACAAATCCTATACACTTGAAGTTACAATGGGTAGAATGAAATACAACATAGCAAACC
21396225 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGACGCT
196 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGACGCT
* * * * *
21396262 ACAAATCCTATACCCTTGAAGTTGTAGTGGGTCGGATT-AAATCTACCATAGCAAACCTTATCTC
1 ACAAATCATATACCCCTGAAATTGCAGTGGGTCGAATTGAAATC-ACCATAGCAAACCTTATCTC
* * * * * * *
21396326 CCTGAAGTTGCAATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAA
65 CCTGAAGTTGCAATGGAACAGATTAAAGCTACGAATATCATCTCCCTAAAGTTGCAATGGAGCAA
* * * *
21396391 ATTGAAGCTACAATTCCTATACGAC-TGAAGTTACAGTGGATTAGAATGAAGCTACAACA-A-CA
130 ATTGAAGCTACAAATCCTATAC-ACTTGAAGTTACAATGG-GTAGAATGAA-ATACAACATAGCA
* *
21396453 AATCTTATCTCCTTGAAGTTGCA
192 AACCTTATCTCCCTGAAGTTGCA
21396476 ATAGAGCAAG
Statistics
Matches: 175, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
231 4 0.02
232 158 0.90
233 8 0.05
234 5 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (232 bp):
ACAAATCATATACCCCTGAAATTGCAGTGGGTCGAATTGAAATCACCATAGCAAACCTTATCTCC
CTGAAGTTGCAATGGAACAGATTAAAGCTACGAATATCATCTCCCTAAAGTTGCAATGGAGCAAA
TTGAAGCTACAAATCCTATACACTTGAAGTTACAATGGGTAGAATGAAATACAACATAGCAAACC
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGACGCT
Found at i:21396472 original size:138 final size:138
Alignment explanation
Indices: 21396224--21396492 Score: 335
Period size: 138 Copynumber: 1.9 Consensus size: 138
21396214 CATAGTTAAC
* * * **
21396224 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGACGCTACAAATCCTATACCCTTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATACACTTGAAGTTACAG
* * * * * * * *
21396289 TGGGTCGGATTAAATCTACCATAGCAAACCTTATCTCCCTGAAGTTGCAATGGAGC-AGATTGAA
66 TGGATCAGAATAAAGCTACAACAACAAACCTTATCTCCCTGAAGTTGCAATAGAGCAAGA-TGAA
21396353 GCTACGAAT
130 GCTACGAAT
* *
21396362 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGCTACAATTCCTATACGAC-TGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATAC-ACTTGAAGTTACA
* * * *
21396426 GTGGATTAGAATGAAGCTACAACAACAAATCTTATCTCCTTGAAGTTGCAATAGAGCAAGATGAA
65 GTGGATCAGAATAAAGCTACAACAACAAACCTTATCTCCCTGAAGTTGCAATAGAGCAAGATGAA
21396491 GC
130 GC
21396493 CATGATACCA
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
138 106 0.96
139 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (138 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATACACTTGAAGTTACAG
TGGATCAGAATAAAGCTACAACAACAAACCTTATCTCCCTGAAGTTGCAATAGAGCAAGATGAAG
CTACGAAT
Found at i:21399275 original size:16 final size:17
Alignment explanation
Indices: 21399250--21399284 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
21399240 TCTTTCTCTC
*
21399250 TTTTCGTTTCT-TTTTT
1 TTTTCCTTTCTGTTTTT
21399266 TTTTCCTTTCTGTTTTT
1 TTTTCCTTTCTGTTTTT
21399283 TT
1 TT
21399285 ATTAATCGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (17 bp):
TTTTCCTTTCTGTTTTT
Found at i:21401993 original size:30 final size:30
Alignment explanation
Indices: 21401931--21402000 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
21401921 TTGTATATAT
* *
21401931 AAACTTTAATTTGGTGCAATTATACACGTG
1 AAACTTTAATGTGGTGCAAATATACACGTG
* * * *
21401961 AAACTATAATGTGGTTCAAATATATACTTG
1 AAACTTTAATGTGGTGCAAATATACACGTG
21401991 AAACTTTAAT
1 AAACTTTAAT
21402001 TTTGATTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (30 bp):
AAACTTTAATGTGGTGCAAATATACACGTG
Found at i:21402874 original size:41 final size:40
Alignment explanation
Indices: 21402829--21402927 Score: 101
Period size: 41 Copynumber: 2.4 Consensus size: 40
21402819 TTATTGTTAC
* *
21402829 TTAGTATTATTGTTAGTAAAAAACTAATATTTTTATTATGG
1 TTAGTATTATTGTTAGTAAAAAACTAA-ATTATTATTATAG
* * * *
21402870 TTAGTTATTA-GGATTAGTAAAAACCTTAATTATTATTTTAG
1 TTAG-TATTATTG-TTAGTAAAAAACTAAATTATTATTATAG
*
21402911 TTAGTATGATTGTTAGT
1 TTAGTATTATTGTTAGT
21402928 TATTATTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
40 9 0.19
41 20 0.43
42 18 0.38
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (40 bp):
TTAGTATTATTGTTAGTAAAAAACTAAATTATTATTATAG
Found at i:21402914 original size:28 final size:28
Alignment explanation
Indices: 21402883--21402969 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
21402873 GTTATTAGGA
21402883 TTAGTAAAAACCTTAATTATTATTTTAG
1 TTAGTAAAAACCTTAATTATTATTTTAG
** *** *
21402911 TTAGTATGATTGTTAGTTATTA-TTT--
1 TTAGTAAAAACCTTAATTATTATTTTAG
*
21402936 TTAGT-AAAACCCTAATTATTATTGTTAG
1 TTAGTAAAAACCTTAATTATTATT-TTAG
21402964 TTAGTA
1 TTAGTA
21402970 TTATTTTGAG
Statistics
Matches: 41, Mismatches: 13, Indels: 9
0.65 0.21 0.14
Matches are distributed among these distances:
24 9 0.22
25 6 0.15
26 2 0.05
27 3 0.07
28 21 0.51
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.49
Consensus pattern (28 bp):
TTAGTAAAAACCTTAATTATTATTTTAG
Found at i:21402927 original size:53 final size:53
Alignment explanation
Indices: 21402869--21402970 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
21402859 TTTTATTATG
*
21402869 GTTAGTTATTAGGATTAGTAAAAACCTTAATTATTATT-TTAGTTAGTATGATT
1 GTTAGTTATTAGGATTAGT-AAAACCCTAATTATTATTGTTAGTTAGTATGATT
***
21402922 GTTAGTTATTATTTTTAGTAAAACCCTAATTATTATTGTTAGTTAGTAT
1 GTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTAT
21402971 TATTTTGAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 17 0.39
53 27 0.61
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (53 bp):
GTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTATGATT
Found at i:21403000 original size:39 final size:41
Alignment explanation
Indices: 21402922--21403138 Score: 144
Period size: 40 Copynumber: 5.0 Consensus size: 41
21402912 TAGTATGATT
* *
21402922 GTTAGTTATTATTTTTAGTAAAACCCTAATTATTATTGTTA
1 GTTAGTTATTATTTTGAGTAAAACACTAATTATTATTGTTA
21402963 GTTAG-TATTATTTTGAGTATAAA-ACT-ATTATTATTGTTA
1 GTTAGTTATTATTTTGAGTA-AAACACTAATTATTATTGTTA
**
21403002 TTGTGTTAGTTATTAGGATT-AGTAAAA-ACCTTAATTATTATTTTAGTTAGTATGA
1 ----GTTAGTTATTA-TTTTGAGTAAAACA-C-T-A--ATTA--TTA-TT-GT-T-A
* *
21403057 TTGTTAGTTATTATTTTTAGTAAAACCCTAATTATTATTGTTA
1 --GTTAGTTATTATTTTGAGTAAAACACTAATTATTATTGTTA
21403100 GTTAG-TATTATTTTGAGTATAAA-ACT-ATTATTATTGTTA
1 GTTAGTTATTATTTTGAGTA-AAACACTAATTATTATTGTTA
21403139 TTGTGTTAGT
Statistics
Matches: 144, Mismatches: 10, Indels: 46
0.72 0.05 0.23
Matches are distributed among these distances:
39 26 0.18
40 30 0.21
41 16 0.11
43 10 0.07
44 11 0.08
45 5 0.03
46 2 0.01
47 3 0.02
49 8 0.06
51 4 0.03
52 5 0.03
53 22 0.15
54 1 0.01
55 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (41 bp):
GTTAGTTATTATTTTGAGTAAAACACTAATTATTATTGTTA
Found at i:21403041 original size:137 final size:137
Alignment explanation
Indices: 21402813--21403161 Score: 614
Period size: 137 Copynumber: 2.6 Consensus size: 137
21402803 GTTTAGTTAT
* * * * * *
21402813 TAATAATTATTGTTACTTAGTATTATTGTT-AGTAAAAAACTAATATTTTTATTA-TG-GTTAGT
1 TAATTATTATTGTTAGTTAGTATTATT-TTGAGTATAAAACTATTATTATTGTTATTGTGTTAGT
21402875 TATTAGGATTAGTAAAAACCTTAATTATTATTTTAGTTAGTATGATTGTTAGTTATTATTTTTAG
65 TATTAGGATTAGTAAAAACCTTAATTATTATTTTAGTTAGTATGATTGTTAGTTATTATTTTTAG
21402940 TAAAACCC
130 TAAAACCC
21402948 TAATTATTATTGTTAGTTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTGTTAGTT
1 TAATTATTATTGTTAGTTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTGTTAGTT
21403013 ATTAGGATTAGTAAAAACCTTAATTATTATTTTAGTTAGTATGATTGTTAGTTATTATTTTTAGT
66 ATTAGGATTAGTAAAAACCTTAATTATTATTTTAGTTAGTATGATTGTTAGTTATTATTTTTAGT
21403078 AAAACCC
131 AAAACCC
21403085 TAATTATTATTGTTAGTTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTGTTAGTT
1 TAATTATTATTGTTAGTTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTGTTAGTT
21403150 ATTAGGATTAGT
66 ATTAGGATTAGT
21403162 GGTCAAACGT
Statistics
Matches: 205, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
134 2 0.01
135 45 0.22
136 2 0.01
137 156 0.76
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (137 bp):
TAATTATTATTGTTAGTTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTGTTAGTT
ATTAGGATTAGTAAAAACCTTAATTATTATTTTAGTTAGTATGATTGTTAGTTATTATTTTTAGT
AAAACCC
Found at i:21403051 original size:28 final size:28
Alignment explanation
Indices: 21403020--21403106 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
21403010 GTTATTAGGA
21403020 TTAGTAAAAACCTTAATTATTATTTTAG
1 TTAGTAAAAACCTTAATTATTATTTTAG
** *** *
21403048 TTAGTATGATTGTTAGTTATTA-TTT--
1 TTAGTAAAAACCTTAATTATTATTTTAG
*
21403073 TTAGT-AAAACCCTAATTATTATTGTTAG
1 TTAGTAAAAACCTTAATTATTATT-TTAG
21403101 TTAGTA
1 TTAGTA
21403107 TTATTTTGAG
Statistics
Matches: 41, Mismatches: 13, Indels: 9
0.65 0.21 0.14
Matches are distributed among these distances:
24 9 0.22
25 6 0.15
26 2 0.05
27 3 0.07
28 21 0.51
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.49
Consensus pattern (28 bp):
TTAGTAAAAACCTTAATTATTATTTTAG
Found at i:21403064 original size:53 final size:53
Alignment explanation
Indices: 21403005--21403107 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 53
21402995 ATTGTTATTG
*
21403005 TGTTAGTTATTAGGATTAGTAAAAACCTTAATTATTATT-TTAGTTAGTATGAT
1 TGTTAGTTATTAGGATTAGT-AAAACCCTAATTATTATTGTTAGTTAGTATGAT
***
21403058 TGTTAGTTATTATTTTTAGTAAAACCCTAATTATTATTGTTAGTTAGTAT
1 TGTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTAT
21403108 TATTTTGAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 17 0.38
53 28 0.62
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (53 bp):
TGTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTATGAT
Found at i:21406209 original size:77 final size:77
Alignment explanation
Indices: 21406046--21406283 Score: 328
Period size: 77 Copynumber: 3.2 Consensus size: 77
21406036 TGTAATGTTG
*
21406046 TAAAAAGTATAATTCATTTGGAATAATTAAAATTATT---C--A-GCTTATGCTTAAATTGTATC
1 TAAAAAGTAAAATTCATTTGGAATAATTAAAATTATTCAGCTTATGCTTATGCTTAAATTGTATC
21406105 CAAATTAAGGTA
66 CAAATTAAGGTA
* **
21406117 TTAAAAA-CATGATTCATTTGGAATAATTAAAATTATTCAGCTTATGCTTATGCTTAAATTGTAT
1 -TAAAAAGTAAAATTCATTTGGAATAATTAAAATTATTCAGCTTATGCTTATGCTTAAATTGTAT
*
21406181 CCAAATTAAGTTA
65 CCAAATTAAGGTA
* *
21406194 TAAAAAGTAAAATTCATTTGGAATAATTAAACTTATTCAGCTTATGCTTATGCTTCAATTGTATC
1 TAAAAAGTAAAATTCATTTGGAATAATTAAAATTATTCAGCTTATGCTTATGCTTAAATTGTATC
*
21406259 CAAATCAAGGTA
66 CAAATTAAGGTA
* *
21406271 TTAAAAGTGAAAT
1 TAAAAAGTAAAAT
21406284 AAATTAAGTA
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
71 28 0.19
72 6 0.04
74 1 0.01
76 7 0.05
77 105 0.71
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (77 bp):
TAAAAAGTAAAATTCATTTGGAATAATTAAAATTATTCAGCTTATGCTTATGCTTAAATTGTATC
CAAATTAAGGTA
Found at i:21408782 original size:152 final size:152
Alignment explanation
Indices: 21408320--21409076 Score: 846
Period size: 154 Copynumber: 5.0 Consensus size: 152
21408310 AAAAATTAGT
* * * *
21408320 AAAAAACCA-TTATTTCGGTCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAAT
1 AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAATAT
*
21408384 ATCATATTTTCTAATTTTATTATTTTACATTATTTTATTACATTATGTTTGAAATTTAAATAAAT
66 A-C-TATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT-AATAAAT
*
21408449 TTAGTGTATTTTTTAAATAAATTTA
128 TTAGTGTATTTTTTAAATAAATTAA
* * *
21408474 AAGAAACCA-TTATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAA
1 AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTAC-TT---TAAAA
* * * * * *
21408538 ATATATTATTTT-GATATTTTATTATTTTACTTTATCTTAGTACATTATGTTTGAAATGT-ATTA
62 ATATACTATTTTCTA-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATAA
* * * * *
21408601 ATTAATTCTATTTTTT---TAATTTAG
126 ATTTAGTGTATTTTTTAAATAAATTAA
* *
21408625 TAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAAATTTATTACTTTAAAAATAT
1 AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAATAT
21408690 ACTATTTT-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAATAAATTT
66 ACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT-AATAAATTT
*
21408754 AGTGTGTTTTTTAAATAAATT-A
130 AGTGTATTTTTTAAATAAATTAA
* * *
21408776 AAAAAAACCCTTATTTCGGCCCTTTGCTCGTATTTTTTTCCCGATTTTTATTACTTTCAATAAAA
1 AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTAC-TT---TAAAA
* * * *
21408841 ATATATTATTTTCGT-ATTTTATTATTTTA-ATTTATCTTAGTACATTATGTTTGAAATGTATTA
62 ATATACTATTTTC-TAATTTTATTATTTTACA-TTATTTTAGTACATTATGTTTGAAATTTAATA
* * * *
21408904 ATTATTT-CTGT-TTTTTT--TTAATTTAG
125 A--ATTTAGTGTATTTTTTAAATAAATTAA
* * * * *
21408930 TAAAAAACCCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAAAA-A
1 AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTC-CCGAATTTTATTACTTTAAAAATA
*
21408994 TATCATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT-ATTAAT
65 TA-C-TATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATAAAT
*
21409058 TTAGTGTGTTTTTTAAATA
128 TTAGTGTATTTTTTAAATA
21409077 TACAATTTTT
Statistics
Matches: 512, Mismatches: 61, Indels: 61
0.81 0.10 0.10
Matches are distributed among these distances:
147 41 0.08
148 17 0.03
149 19 0.04
150 6 0.01
151 77 0.15
152 96 0.19
153 8 0.02
154 103 0.20
155 42 0.08
156 89 0.17
157 5 0.01
158 9 0.02
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (152 bp):
AAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAATAT
ACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATAAATTTA
GTGTATTTTTTAAATAAATTAA
Found at i:21408865 original size:303 final size:305
Alignment explanation
Indices: 21408315--21409076 Score: 1268
Period size: 303 Copynumber: 2.5 Consensus size: 305
21408305 TCAAAAAAAA
*
21408315 TTAGTAAAAAACCATTATTTCGGTCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAA
1 TTAGTAAAAAACC-TTATTTCGGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT-AAA
*
21408380 AAATATCATATTTTCTAATTTTATTATTTTACATTATTTTATTACATTATGTTTGAAATTTAAAT
64 AAATATCATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAAT
* * *
21408445 AAATTTAGTGTATTTTTTAAATAAATTTAAAGAAACCATTATTTCGGCCCTTTGCTCGTATTTTT
129 AAATTTAGTGTGTTTTTTAAATAAATTAAAAAAAACCATTATTTCGGCCCTTTGCTCGTATTTTT
*
21408510 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTGATATTTTATTATTTTACTTTATCT
194 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTGATATTTTATTATTTTAATTTATCT
21408575 TAGTACATTATGTTTGAAATGTATTAATTAATTC-TATTTTTTTAAT
259 TAGTACATTATGTTTGAAATGTATTAATTAATTCGTATTTTTTTAAT
* *
21408621 TTAGTAAAAAACACTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAAATTTATTACTTT-AAA
1 TTAGTAAAAAAC-CTTATTTCGGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAA
21408685 AATAT-ACTATTTT-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAAT
65 AATATCA-TATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAAT
*
21408748 AAATTTAGTGTGTTTTTTAAATAAATTAAAAAAAACCCTTATTTCGGCCCTTTGCTCGTATTTTT
129 AAATTTAGTGTGTTTTTTAAATAAATTAAAAAAAACCATTATTTCGGCCCTTTGCTCGTATTTTT
*
21408813 TTCCCGATTTTTATTACTTTCAATAAAAATATATTATTTTCG-TATTTTATTATTTTAATTTATC
194 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTT-GATATTTTATTATTTTAATTTATC
* *
21408877 TTAGTACATTATGTTTGAAATGTATTAATTATTTCTGTTTTTTTTTAAT
258 TTAGTACATTATGTTTGAAATGTATTAATTAATTC-GTATTTTTTTAAT
* *
21408926 TTAGTAAAAAACCCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAA
1 TTAGTAAAAAA-CCTTATTTCGGCCATTTGTTCGTATTTTTTTC-CCGAATTTTATTACTTTAAA
21408991 AAATATCATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT--AT
64 AAATATCATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAAT
*
21409054 TAATTTAGTGTGTTTTTTAAATA
129 AAATTTAGTGTGTTTTTTAAATA
21409077 TACAATTTTT
Statistics
Matches: 429, Mismatches: 17, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
303 205 0.48
304 15 0.03
305 51 0.12
306 96 0.22
307 15 0.03
308 47 0.11
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (305 bp):
TTAGTAAAAAACCTTATTTCGGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAA
ATATCATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAATAA
ATTTAGTGTGTTTTTTAAATAAATTAAAAAAAACCATTATTTCGGCCCTTTGCTCGTATTTTTTT
CCCGAATTTTATTACTTTCAATAAAAATATATTATTTTGATATTTTATTATTTTAATTTATCTTA
GTACATTATGTTTGAAATGTATTAATTAATTCGTATTTTTTTAAT
Found at i:21409733 original size:11 final size:11
Alignment explanation
Indices: 21409711--21409743 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
21409701 AACTAATCCT
21409711 CTCTCAAATTTC
1 CTCTC-AATTTC
21409723 CTCTCAATTTC
1 CTCTCAATTTC
21409734 CTCTCAATTT
1 CTCTCAATTT
21409744 TGGTGTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:21409848 original size:27 final size:26
Alignment explanation
Indices: 21409818--21409868 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
21409808 ACTAAAGCGT
* *
21409818 ATTGACGATAAAGTTAAAAATAAATAA
1 ATTGA-GAGAAAGTTAAAAAAAAATAA
*
21409845 ATTGAGAGAAATTTAAAAAAAAAT
1 ATTGAGAGAAAGTTAAAAAAAAAT
21409869 TAGAGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (26 bp):
ATTGAGAGAAAGTTAAAAAAAAATAA
Found at i:21410386 original size:14 final size:14
Alignment explanation
Indices: 21410369--21410395 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21410359 AGTGTTTTGG
21410369 TGCTGTTATTTTTC
1 TGCTGTTATTTTTC
21410383 TGCTGTTATTTTT
1 TGCTGTTATTTTT
21410396 GTTATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.11, G:0.15, T:0.67
Consensus pattern (14 bp):
TGCTGTTATTTTTC
Found at i:21410762 original size:14 final size:14
Alignment explanation
Indices: 21410716--21410814 Score: 64
Period size: 14 Copynumber: 7.1 Consensus size: 14
21410706 TTGACCCTTC
*
21410716 TTCTTCCCTTTT-T
1 TTCTTTCCTTTTCT
*
21410729 TT-TTTTC-TTTCT
1 TTCTTTCCTTTTCT
21410741 TCTCCTTTCCTTTTCT
1 T-T-CTTTCCTTTTCT
*
21410757 TTCTTTCTTTTTCT
1 TTCTTTCCTTTTCT
* *
21410771 TTCTCCTCCTTTCTTT
1 TTCT-TTCCTTT-TCT
21410787 TTCTTT-C-TTTCT
1 TTCTTTCCTTTTCT
*
21410799 TTCCTCTCCTTTTCT
1 TT-CTTTCCTTTTCT
21410814 T
1 T
21410815 CTCCACCCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
11 3 0.05
12 9 0.14
13 8 0.12
14 17 0.26
15 17 0.26
16 12 0.18
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCTTTCCTTTTCT
Found at i:21410768 original size:34 final size:34
Alignment explanation
Indices: 21410723--21410800 Score: 124
Period size: 34 Copynumber: 2.4 Consensus size: 34
21410713 TTCTTCTTCC
*
21410723 CTTT-TTT-TTTTTCTTTCTTCTCCTTTCCTTTT
1 CTTTCTTTCTTTTTCTTTCTCCTCCTTTCCTTTT
*
21410755 CTTTCTTTCTTTTTCTTTCTCCTCCTTTCTTTTT
1 CTTTCTTTCTTTTTCTTTCTCCTCCTTTCCTTTT
21410789 CTTTCTTTCTTT
1 CTTTCTTTCTTT
21410801 CCTCTCCTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
32 4 0.10
33 3 0.07
34 35 0.83
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (34 bp):
CTTTCTTTCTTTTTCTTTCTCCTCCTTTCCTTTT
Found at i:21410773 original size:24 final size:24
Alignment explanation
Indices: 21410716--21410765 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
21410706 TTGACCCTTC
*
21410716 TTCTTC-CCTTT--TTTTTTTTCT
1 TTCTTCTCCTTTCCTTTTCTTTCT
21410737 TTCTTCTCCTTTCCTTTTCTTTCT
1 TTCTTCTCCTTTCCTTTTCTTTCT
21410761 TTCTT
1 TTCTT
21410766 TTTCTTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 6 0.24
22 5 0.20
24 14 0.56
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (24 bp):
TTCTTCTCCTTTCCTTTTCTTTCT
Found at i:21411160 original size:24 final size:22
Alignment explanation
Indices: 21411108--21411160 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
21411098 CTCGTATTTA
21411108 ATTTTT-TTCTCACATTATAGT
1 ATTTTTATTCTCACATTATAGT
*
21411129 ATTGTTATTCTCACTATTACT-GTT
1 ATTTTTATTCTCAC-ATTA-TAG-T
21411153 ATTTTTAT
1 ATTTTTAT
21411161 ATTAATCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 7 0.27
23 5 0.19
24 9 0.35
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (22 bp):
ATTTTTATTCTCACATTATAGT
Found at i:21416557 original size:14 final size:14
Alignment explanation
Indices: 21416518--21416557 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
21416508 TTATAAACAA
*
21416518 TAAACTTTAAACCT
1 TAAACTTTAAATCT
* *
21416532 TAAATTTTAAATGT
1 TAAACTTTAAATCT
21416546 TAAACTTTAAAT
1 TAAACTTTAAAT
21416558 ACTAAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (14 bp):
TAAACTTTAAATCT
Found at i:21416563 original size:21 final size:21
Alignment explanation
Indices: 21416524--21416563 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
21416514 ACAATAAACT
**
21416524 TTAAACCTTAAATTTTAAATG
1 TTAAACCTTAAATACTAAATG
*
21416545 TTAAACTTTAAATACTAAA
1 TTAAACCTTAAATACTAAA
21416564 ATTTACATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (21 bp):
TTAAACCTTAAATACTAAATG
Found at i:21416590 original size:20 final size:21
Alignment explanation
Indices: 21416551--21416591 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
21416541 AATGTTAAAC
21416551 TTTAAATACTAAAATTTACAT
1 TTTAAATACTAAAATTTACAT
* *
21416572 TTTAAATCCT-AACTTTACAT
1 TTTAAATACTAAAATTTACAT
21416592 CTAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAATACTAAAATTTACAT
Found at i:21416626 original size:7 final size:7
Alignment explanation
Indices: 21416612--21416681 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
21416602 CTAACAGCTA
21416612 AAAT-TT
1 AAATATT
21416618 AAATATT
1 AAATATT
*
21416625 AAATACT
1 AAATATT
21416632 AAAT-TCT
1 AAATAT-T
21416639 AAAT-TCT
1 AAATAT-T
*
21416646 AAATCTT
1 AAATATT
21416653 AAATATT
1 AAATATT
21416660 -AAT-TT
1 AAATATT
*
21416665 AAATACT
1 AAATATT
*
21416672 AAATAAT
1 AAATATT
21416679 AAA
1 AAA
21416682 CCATAAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
5 2 0.04
6 10 0.19
7 41 0.76
8 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (7 bp):
AAATATT
Found at i:21416633 original size:21 final size:20
Alignment explanation
Indices: 21416609--21416674 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
21416599 AATCTAACAG
21416609 CTAAAATTTAAATATTAAATA
1 CTAAAATTTAAAT-TTAAATA
21416630 CT-AAATTCTAAATTCTAAAT-
1 CTAAAATT-TAAATT-TAAATA
*
21416650 CTTAAATATT-AATTTAAATA
1 CTAAAAT-TTAAATTTAAATA
21416670 CTAAA
1 CTAAA
21416675 TAATAAACCA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
19 5 0.13
20 16 0.41
21 17 0.44
22 1 0.03
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (20 bp):
CTAAAATTTAAATTTAAATA
Found at i:21416634 original size:14 final size:13
Alignment explanation
Indices: 21416617--21416675 Score: 66
Period size: 14 Copynumber: 4.4 Consensus size: 13
21416607 AGCTAAAATT
21416617 TAAATATTAAATAC
1 TAAAT-TTAAATAC
*
21416631 TAAATTCTAAATTC
1 TAAATT-TAAATAC
21416645 TAAATCTTAAATA-
1 TAAAT-TTAAATAC
*
21416658 TTAATTTAAATAC
1 TAAATTTAAATAC
21416671 TAAAT
1 TAAAT
21416676 AATAAACCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.18
13 9 0.24
14 21 0.55
15 1 0.03
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAATTTAAATAC
Found at i:21416674 original size:33 final size:33
Alignment explanation
Indices: 21416612--21416716 Score: 104
Period size: 33 Copynumber: 3.1 Consensus size: 33
21416602 CTAACAGCTA
* *
21416612 AAAT-TTAAATATTAAATACTAAATTCTAAATTCT
1 AAATCTTAAATATT-AAT-TTAAATACTAAATTCT
**
21416646 AAATCTTAAATATTAATTTAAATACTAAATAAT
1 AAATCTTAAATATTAATTTAAATACTAAATTCT
* * * *
21416679 AAACCATAAATAATAATTTAAAATACTAAACTCT
1 AAATCTTAAATATTAATTT-AAATACTAAATTCT
21416713 AAAT
1 AAAT
21416717 TATAAAGAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
33 28 0.48
34 21 0.36
35 9 0.16
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (33 bp):
AAATCTTAAATATTAATTTAAATACTAAATTCT
Found at i:21417695 original size:16 final size:16
Alignment explanation
Indices: 21417660--21417708 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
21417650 CTAAAATTAT
*
21417660 ATAAGTTTTC-TTTAA
1 ATAAATTTTCATTTAA
*
21417675 TTAAATTTTCATTTAA
1 ATAAATTTTCATTTAA
**
21417691 ATAAATTTAAATTTAA
1 ATAAATTTTCATTTAA
21417707 AT
1 AT
21417709 CACCTTCTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 8 0.29
16 20 0.71
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (16 bp):
ATAAATTTTCATTTAA
Found at i:21427674 original size:33 final size:33
Alignment explanation
Indices: 21427637--21427704 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
21427627 TTGCTGCTAT
*
21427637 TTTTGCTGAGTAAATGACGCATCTGTATGCACA
1 TTTTGCTGAGTAAATGACGCATATGTATGCACA
* * * *
21427670 TTTTGTTGAGTAAATGTCGTATATGTGTGCACA
1 TTTTGCTGAGTAAATGACGCATATGTATGCACA
21427703 TT
1 TT
21427705 CTACTGTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (33 bp):
TTTTGCTGAGTAAATGACGCATATGTATGCACA
Found at i:21433119 original size:43 final size:43
Alignment explanation
Indices: 21433058--21433257 Score: 258
Period size: 43 Copynumber: 4.7 Consensus size: 43
21433048 AAAAGTATTT
*
21433058 GCGGCGCTTTGCTCACAAACGCCGCTAAAGACCAAGACCTTTA
1 GCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTA
* * * *
21433101 GCGGCGCTTATCCCACAAACGCCGGTAAAGATCAAGACCTTTA
1 GCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTA
** * **
21433144 GCGGCATTTTTCTCACAAATGCCGCT-AAGGTCAAGACCTTTA
1 GCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTA
* * *
21433186 GCGGCACTTTTTTTACAAACGCCGCTAAAGACCAAGACCTTTA
1 GCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTA
* *
21433229 GCGACGCTTTTCTCACAAACACCGCTAAA
1 GCGGCGCTTTTCTCACAAACGCCGCTAAA
21433258 AACATGACTT
Statistics
Matches: 133, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 37 0.28
43 96 0.72
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
GCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTA
Found at i:21433204 original size:85 final size:85
Alignment explanation
Indices: 21433064--21433256 Score: 242
Period size: 85 Copynumber: 2.3 Consensus size: 85
21433054 ATTTGCGGCG
* * *
21433064 CTTTGCTCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTATCCCACAAACGCCGGTAA
1 CTTTTCTCACAAACGCCGCT-AAGACCAAGACCTTTAGCGGCACTTATCCCACAAACGCCGCTAA
* *
21433129 AGATCAAGACCTTTAGCGGCA
65 AGACCAAGACCTTTAGCGACA
* * ** * ***
21433150 TTTTTCTCACAAATGCCGCTAAGGTCAAGACCTTTAGCGGCACTTTTTTTACAAACGCCGCTAAA
1 CTTTTCTCACAAACGCCGCTAAGACCAAGACCTTTAGCGGCACTTATCCCACAAACGCCGCTAAA
*
21433215 GACCAAGACCTTTAGCGACG
66 GACCAAGACCTTTAGCGACA
*
21433235 CTTTTCTCACAAACACCGCTAA
1 CTTTTCTCACAAACGCCGCTAA
21433257 AAACATGACT
Statistics
Matches: 90, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
85 73 0.81
86 17 0.19
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (85 bp):
CTTTTCTCACAAACGCCGCTAAGACCAAGACCTTTAGCGGCACTTATCCCACAAACGCCGCTAAA
GACCAAGACCTTTAGCGACA
Found at i:21437037 original size:41 final size:41
Alignment explanation
Indices: 21436956--21437273 Score: 401
Period size: 41 Copynumber: 7.8 Consensus size: 41
21436946 CAAAATATTT
* * * *
21436956 TTAGCGGCGCTTCTCCAAAAACGCCGCTACAGACCTCAGCA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGACCCCAGCA
* *
21436997 TTAGTGGCG-TTTTACCAAAAACGCCGCTAAAGATCCCAGCA
1 TTAGCGGCGCTTTTA-CAAAAACGCCGCTAAAGACCCCAGCA
* *
21437038 CTAGCGGCGC-TTTATTAAAAACGCCGCTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTA-CAAAAACGCCGCTAAAGACCCCAGCA
* *
21437079 TTAGCGGCGCTTCTACACAAACGCCGCTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGACCCCAGCA
* *
21437120 CTAGCGGCGC-TTTATTAAAAACGCCGCTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTA-CAAAAACGCCGCTAAAGACCCCAGCA
* * *
21437161 TTAGCGGCGCTTCTACACAAACGCCGCTAAATACCCCAGCA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGACCCCAGCA
* *
21437202 TTAGCGGCGCTTTT-CAAAAAATGCCGCTAAAGATCCCAGCA
1 TTAGCGGCGCTTTTAC-AAAAACGCCGCTAAAGACCCCAGCA
* *
21437243 TTAGCGGCGCTTCTACAGAAACGCCGCTAAA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAA
21437274 TCCCCCAAAG
Statistics
Matches: 238, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
40 7 0.03
41 224 0.94
42 7 0.03
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.18
Consensus pattern (41 bp):
TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGACCCCAGCA
Found at i:21437280 original size:82 final size:82
Alignment explanation
Indices: 21436972--21437273 Score: 464
Period size: 82 Copynumber: 3.7 Consensus size: 82
21436962 GCGCTTCTCC
* * * * * *
21436972 AAAAACGCCGCTACAGACCTCAGCATTAGTGGCG-TTTTACCAAAAACGCCGCTAAAGATCCCAG
1 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTA-CACAAACGCCGCTAAAGACCCCAG
21437036 CACTAGCGGCGCTTTATT
65 CACTAGCGGCGCTTTATT
21437054 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAAGACCCCAGC
1 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAAGACCCCAGC
21437119 ACTAGCGGCGCTTTATT
66 ACTAGCGGCGCTTTATT
*
21437136 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAATACCCCAGC
1 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAAGACCCCAGC
* *
21437201 ATTAGCGGCGCTTT-TCA
66 ACTAGCGGCGCTTTAT-T
* * *
21437218 AAAAATGCCGCTAAAGATCCCAGCATTAGCGGCGCTTCTACAGAAACGCCGCTAAA
1 AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAA
21437274 TCCCCCAAAG
Statistics
Matches: 206, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
81 1 0.00
82 201 0.98
83 4 0.02
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTCTACACAAACGCCGCTAAAGACCCCAGC
ACTAGCGGCGCTTTATT
Found at i:21438266 original size:3 final size:3
Alignment explanation
Indices: 21438260--21438309 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
21438250 ATTATGTGAC
21438260 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
21438308 AG
1 AG
21438310 TCACCAAACC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:21441857 original size:16 final size:18
Alignment explanation
Indices: 21441830--21441862 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21441820 TAGAATTGGG
21441830 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
21441847 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
21441863 TTTAACTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:21444152 original size:49 final size:49
Alignment explanation
Indices: 21444096--21444191 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
21444086 TAGTAAAGAA
*
21444096 CAAAGTAGAAAAATAATGAACAACTAATATGTTTACACAGTTCGATTCC
1 CAAAGTAGAAAAACAATGAACAACTAATATGTTTACACAGTTCGATTCC
21444145 CAAAGTAGAAAAACAATGAACAACTAATATGTTTACACAGTTCGATT
1 CAAAGTAGAAAAACAATGAACAACTAATATGTTTACACAGTTCGATT
21444192 TCCCTACGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (49 bp):
CAAAGTAGAAAAACAATGAACAACTAATATGTTTACACAGTTCGATTCC
Found at i:21446863 original size:255 final size:255
Alignment explanation
Indices: 21446412--21446922 Score: 995
Period size: 255 Copynumber: 2.0 Consensus size: 255
21446402 AGAGAGTGGG
21446412 AAGTGGGAGAGATAATTTGGGATAATTTCAAAACTACCTATATCCCACTAAATCCCATTAACTAA
1 AAGTGGGAGAGATAATTTGGGATAATTTCAAAACTACCTATATCCCACTAAATCCCATTAACTAA
21446477 TCACCTATCGGATTCCTCTCAGAGTTCAAAACAAAAATAATTCCCACTTTGCACACACAAGATTT
66 TCACCTATCGGATTCCTCTCAGAGTTCAAAACAAAAATAATTCCCACTTTGCACACACAAGATTT
*
21446542 GAACACAAGACCAAAGAGTAAGTTGAAGCCTTGCCACTGAACGAACAAACTCATCATTATCATCA
131 GAACACAAGACCAAAGAGTAAGTTGAAGCCTTGCCACTGAACCAACAAACTCATCATTATCATCA
21446607 ATTGAGTGAAATTAATATATAAACTAGGTCTTTAAAGTCAAAGGTTGAAACAAAAATTGA
196 ATTGAGTGAAATTAATATATAAACTAGGTCTTTAAAGTCAAAGGTTGAAACAAAAATTGA
*
21446667 AAGTGGGAGAGATCATTTGGGATAATTTCAAAACTACCTATATCCCACTAAATCCCATTAACTAA
1 AAGTGGGAGAGATAATTTGGGATAATTTCAAAACTACCTATATCCCACTAAATCCCATTAACTAA
21446732 TCACCTATCGGATTCCTCTCAGAGTTCAAAACAAAAATAATTCCCACTTTGCACACACAAGATTT
66 TCACCTATCGGATTCCTCTCAGAGTTCAAAACAAAAATAATTCCCACTTTGCACACACAAGATTT
*
21446797 GAACACAAGACCAAAGGGTAAGTTGAAGCCTTGCCACTGAACCAACAAACTCATCATTATCATCA
131 GAACACAAGACCAAAGAGTAAGTTGAAGCCTTGCCACTGAACCAACAAACTCATCATTATCATCA
21446862 ATTGAGTGAAATTAATATATAAACTAGGTCTTTAAAGTCAAAGGTTGAAACAAAAATTGA
196 ATTGAGTGAAATTAATATATAAACTAGGTCTTTAAAGTCAAAGGTTGAAACAAAAATTGA
21446922 A
1 A
21446923 GGAAAGGGAT
Statistics
Matches: 253, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 253 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (255 bp):
AAGTGGGAGAGATAATTTGGGATAATTTCAAAACTACCTATATCCCACTAAATCCCATTAACTAA
TCACCTATCGGATTCCTCTCAGAGTTCAAAACAAAAATAATTCCCACTTTGCACACACAAGATTT
GAACACAAGACCAAAGAGTAAGTTGAAGCCTTGCCACTGAACCAACAAACTCATCATTATCATCA
ATTGAGTGAAATTAATATATAAACTAGGTCTTTAAAGTCAAAGGTTGAAACAAAAATTGA
Found at i:21451831 original size:3 final size:3
Alignment explanation
Indices: 21451807--21451846 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
21451797 ATTAATTAAT
* *
21451807 TAA T-A TAA TGA TAA TGA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
21451847 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:21451930 original size:19 final size:21
Alignment explanation
Indices: 21451896--21451945 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
21451886 AAAATGTATT
*
21451896 TTAAATATTATATAATT-ATA
1 TTAAATATTTTATAATTCATA
21451916 TTAAA-ATTTTATAATTCATA
1 TTAAATATTTTATAATTCATA
*
21451936 ATAAATATTT
1 TTAAATATTT
21451946 ATGTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 10 0.38
20 12 0.46
21 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAATATTTTATAATTCATA
Found at i:21459006 original size:22 final size:23
Alignment explanation
Indices: 21458965--21459007 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
21458955 TATAATTTCT
* *
21458965 TTTTCGGTTTTGGGGGTTTTTTG
1 TTTTCGGTTTTAGGGATTTTTTG
21458988 TTTTC-GTTTTAGGGATTTTT
1 TTTTCGGTTTTAGGGATTTTT
21459008 AATTTGGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.05, C:0.05, G:0.28, T:0.63
Consensus pattern (23 bp):
TTTTCGGTTTTAGGGATTTTTTG
Found at i:21462358 original size:24 final size:24
Alignment explanation
Indices: 21462327--21462374 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
21462317 ATTTGCACAT
21462327 CATTAAATTTATTAATAATATATA
1 CATTAAATTTATTAATAATATATA
*
21462351 CATTAAATTTATTGATAATATATA
1 CATTAAATTTATTAATAATATATA
21462375 TAATTTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
CATTAAATTTATTAATAATATATA
Found at i:21470989 original size:4 final size:4
Alignment explanation
Indices: 21470980--21471004 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
21470970 ATACTCCATG
21470980 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
21471005 TAAAAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:21472497 original size:20 final size:20
Alignment explanation
Indices: 21472474--21472512 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
21472464 AGAGACAAAA
*
21472474 TTAATACAACAGA-GCGTATG
1 TTAATAAAAC-GATGCGTATG
21472494 TTAATAAAACGATGCGTAT
1 TTAATAAAACGATGCGTAT
21472513 TATTGGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (20 bp):
TTAATAAAACGATGCGTATG
Found at i:21473380 original size:8 final size:8
Alignment explanation
Indices: 21473360--21473400 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
21473350 CCACCTCCAC
21473360 CTCCACCGA
1 CTCCA-CGA
21473369 -TCCACGA
1 CTCCACGA
21473376 CTCCACGA
1 CTCCACGA
21473384 --CCACGA
1 CTCCACGA
21473390 CTCCACGA
1 CTCCACGA
21473398 CTC
1 CTC
21473401 GACAGTGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.21
7 3 0.10
8 20 0.69
ACGTcount: A:0.24, C:0.51, G:0.12, T:0.12
Consensus pattern (8 bp):
CTCCACGA
Found at i:21473381 original size:22 final size:22
Alignment explanation
Indices: 21473354--21473400 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
21473344 GGAAATCCAC
*
21473354 CTCCACCTCCACCGA-TCCACGA
1 CTCCACCACCA-CGACTCCACGA
*
21473376 CTCCACGACCACGACTCCACGA
1 CTCCACCACCACGACTCCACGA
21473398 CTC
1 CTC
21473401 GACAGTGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.23, C:0.53, G:0.11, T:0.13
Consensus pattern (22 bp):
CTCCACCACCACGACTCCACGA
Found at i:21473387 original size:14 final size:14
Alignment explanation
Indices: 21473360--21473398 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 14
21473350 CCACCTCCAC
21473360 CTCCACCGATCCACGA
1 CTCCA-CGA-CCACGA
21473376 CTCCACGACCACGA
1 CTCCACGACCACGA
21473390 CTCCACGAC
1 CTCCACGAC
21473399 TCGACAGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 15 0.65
15 3 0.13
16 5 0.22
ACGTcount: A:0.26, C:0.51, G:0.13, T:0.10
Consensus pattern (14 bp):
CTCCACGACCACGA
Found at i:21473584 original size:17 final size:17
Alignment explanation
Indices: 21473562--21473596 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
21473552 ACAAACAGTA
21473562 GATGTATAATTTCGTTT
1 GATGTATAATTTCGTTT
*
21473579 GATGTATAATTTCTTTT
1 GATGTATAATTTCGTTT
21473596 G
1 G
21473597 GTTGGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.17, T:0.54
Consensus pattern (17 bp):
GATGTATAATTTCGTTT
Found at i:21473630 original size:37 final size:37
Alignment explanation
Indices: 21473571--21473665 Score: 172
Period size: 37 Copynumber: 2.6 Consensus size: 37
21473561 AGATGTATAA
*
21473571 TTTCGTTTGATGTATAATTTCTTTTGGTTGGATTATT
1 TTTCATTTGATGTATAATTTCTTTTGGTTGGATTATT
*
21473608 TTTCATTTTATGTATAATTTCTTTTGGTTGGATTATT
1 TTTCATTTGATGTATAATTTCTTTTGGTTGGATTATT
21473645 TTTCATTTGATGTATAATTTC
1 TTTCATTTGATGTATAATTTC
21473666 AGATATTTGT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (37 bp):
TTTCATTTGATGTATAATTTCTTTTGGTTGGATTATT
Found at i:21473653 original size:20 final size:20
Alignment explanation
Indices: 21473588--21473653 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
21473578 TGATGTATAA
*
21473588 TTTCTTTTGGTTGGATTATT
1 TTTCATTTGGTTGGATTATT
* *
21473608 TTTCATTT--TATGTA-TA-A
1 TTTCATTTGGT-TGGATTATT
*
21473625 TTTCTTTTGGTTGGATTATT
1 TTTCATTTGGTTGGATTATT
21473645 TTTCATTTG
1 TTTCATTTG
21473654 ATGTATAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 6 0.18
20 15 0.44
ACGTcount: A:0.15, C:0.06, G:0.15, T:0.64
Consensus pattern (20 bp):
TTTCATTTGGTTGGATTATT
Found at i:21473839 original size:17 final size:17
Alignment explanation
Indices: 21473817--21473851 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
21473807 ACAAACAGTA
21473817 GATGTACAATTTCGTTT
1 GATGTACAATTTCGTTT
* *
21473834 GATGTATAATTTCTTTT
1 GATGTACAATTTCGTTT
21473851 G
1 G
21473852 GTTGGATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (17 bp):
GATGTACAATTTCGTTT
Found at i:21474045 original size:16 final size:16
Alignment explanation
Indices: 21474024--21474057 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
21474014 ATATAAATTC
*
21474024 AATAACATTTAATTTT
1 AATAACAATTAATTTT
*
21474040 AATAACAATTAGTTTT
1 AATAACAATTAATTTT
21474056 AA
1 AA
21474058 CTTTTAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (16 bp):
AATAACAATTAATTTT
Found at i:21474718 original size:24 final size:24
Alignment explanation
Indices: 21474691--21474739 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
21474681 TTATCTTTAG
21474691 TAAATTTGATGTATTAT-ATATTTT
1 TAAATTTGATGTA-TATGATATTTT
* *
21474715 TAAATTTGTTTTATATGATATTTT
1 TAAATTTGATGTATATGATATTTT
21474739 T
1 T
21474740 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (24 bp):
TAAATTTGATGTATATGATATTTT
Found at i:21475069 original size:26 final size:24
Alignment explanation
Indices: 21475022--21475070 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
21475012 TTTAATTTGG
*
21475022 TAAATTTTAATTTCTATACTTTTT
1 TAAATTTTAATTTCAATACTTTTT
*
21475046 TAAATTTTAAAATTTCAATCCTTTT
1 TAAATTTT--AATTTCAATACTTTT
21475071 CAAATGACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
26 13 0.62
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (24 bp):
TAAATTTTAATTTCAATACTTTTT
Found at i:21475708 original size:23 final size:24
Alignment explanation
Indices: 21475682--21475737 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
21475672 CACTTAGCCG
21475682 AAATTCCCCCCAAATTAT-CCCCA
1 AAATTCCCCCCAAATTATCCCCCA
*
21475705 AAATT-CCCCCAAATTTTCCCCCA
1 AAATTCCCCCCAAATTATCCCCCA
*
21475728 AAAATCCCCC
1 AAATTCCCCC
21475738 AATTCTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 11 0.38
23 14 0.48
24 4 0.14
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (24 bp):
AAATTCCCCCCAAATTATCCCCCA
Found at i:21475735 original size:11 final size:11
Alignment explanation
Indices: 21475682--21475739 Score: 62
Period size: 11 Copynumber: 5.1 Consensus size: 11
21475672 CACTTAGCCG
*
21475682 AAATTCCCCCC
1 AAATTCCCCCA
*
21475693 AAATTATCCCCA
1 AAATT-CCCCCA
21475705 AAATTCCCCCA
1 AAATTCCCCCA
*
21475716 AATTTTCCCCCA
1 AA-ATTCCCCCA
*
21475728 AAAATCCCCCA
1 AAATTCCCCCA
21475739 A
1 A
21475740 TTCTAGAACC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 20 0.51
12 19 0.49
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (11 bp):
AAATTCCCCCA
Found at i:21475737 original size:12 final size:12
Alignment explanation
Indices: 21475682--21475739 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
21475672 CACTTAGCCG
*
21475682 AAATTCCCCC-C
1 AAATTCCCCCAA
*
21475693 AAATTATCCCC-A
1 AAATT-CCCCCAA
21475705 AAATTCCCCCAA
1 AAATTCCCCCAA
**
21475717 ATTTTCCCCCAA
1 AAATTCCCCCAA
21475729 AAA-TCCCCCAA
1 AAATTCCCCCAA
21475740 TTCTAGAACC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 17 0.45
12 21 0.55
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATTCCCCCAA
Found at i:21477797 original size:70 final size:69
Alignment explanation
Indices: 21477714--21477925 Score: 345
Period size: 69 Copynumber: 3.1 Consensus size: 69
21477704 CTATATTTAA
* * *
21477714 ATATTGTTAATAATAAATTTTATATTTTTA-AAACTAATTGTACATGTTATTTTTCTAAATATTA
1 ATATTTTTAATAATAAATTTTATAATTTTAGAAA-TAATTGTAAATGTTA-TTTTCTAAATATTA
21477778 ACATCT
64 ACATCT
21477784 ATATTTTTAATAATAAATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAAC
1 ATATTTTTAATAATAAATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAAC
21477849 ATCT
66 ATCT
* * *
21477853 ATATTTTCAATAATAAATTTTATAATTTTAGAAAGAATTGTAAATGTTATTTTCCAAATATTAAC
1 ATATTTTTAATAATAAATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAAC
21477918 ATCT
66 ATCT
21477922 ATAT
1 ATAT
21477926 CGCGAGAGAT
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
69 90 0.67
70 42 0.31
71 3 0.02
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (69 bp):
ATATTTTTAATAATAAATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAAC
ATCT
Found at i:21480635 original size:44 final size:43
Alignment explanation
Indices: 21480587--21480713 Score: 137
Period size: 44 Copynumber: 2.9 Consensus size: 43
21480577 GCGTTTTTAT
*
21480587 GAAAAGCGTCGCTAAAAGTCAAGGTCTTTTCGCGGCGTTTATGA
1 GAAAAGCGCCGCTAAAAGTCAAGGTCTTTT-GCGGCGTTTATGA
** * * * *
21480631 GAAAAGCGCCGCTAAAACCCAATGCCTTTTAGCGGCATTTGTGA
1 GAAAAGCGCCGCTAAAAGTCAAGGTCTTTT-GCGGCGTTTATGA
** * *
21480675 TCAAAGCGCCGCTAAAGGTCAAGGTATTTTGCGGCGTTT
1 GAAAAGCGCCGCTAAAAGTCAAGGTCTTTTGCGGCGTTT
21480714 GTAGTGGAAG
Statistics
Matches: 66, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
43 8 0.12
44 58 0.88
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
GAAAAGCGCCGCTAAAAGTCAAGGTCTTTTGCGGCGTTTATGA
Found at i:21482091 original size:14 final size:14
Alignment explanation
Indices: 21482068--21482114 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
21482058 TTCTTTTTCT
21482068 TTTTAGTTTATATA
1 TTTTAGTTTATATA
*
21482082 TTTTAATTTA-ATCAA
1 TTTTAGTTTATAT--A
*
21482097 TTTTAGTTTTTATA
1 TTTTAGTTTATATA
21482111 TTTT
1 TTTT
21482115 TCGAATTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
13 2 0.07
14 14 0.52
15 9 0.33
16 2 0.07
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (14 bp):
TTTTAGTTTATATA
Found at i:21483700 original size:19 final size:19
Alignment explanation
Indices: 21483640--21483700 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
21483630 AACTTTTTTT
*
21483640 TTTTAAAAATCAATTAAAATA
1 TTTTAAAAAT--ATAAAAATA
*
21483661 -TTTAAAAATTTAAAAATTA
1 TTTTAAAAATATAAAAA-TA
21483680 TTTTAAAAA-ATAAATAATA
1 TTTTAAAAATATAAA-AATA
21483699 TT
1 TT
21483701 ATAGAAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 5 0.15
19 10 0.29
20 19 0.56
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTTAAAAATATAAAAATA
Found at i:21485087 original size:31 final size:31
Alignment explanation
Indices: 21484994--21485089 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
21484984 GGCAAATTAC
*
21484994 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
21485025 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
21485057 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
21485088 AA
1 AA
21485090 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:21487497 original size:12 final size:11
Alignment explanation
Indices: 21487480--21487633 Score: 65
Period size: 12 Copynumber: 14.3 Consensus size: 11
21487470 GGTAGGCAAC
21487480 TTTTTTTTGCGT
1 TTTTTTTTGC-T
21487492 TTTTTTTTGCT
1 TTTTTTTTGCT
**
21487503 TTTTTTGCGCT
1 TTTTTTTTGCT
* *
21487514 TTTTACTCT-CT
1 TTTT-TTTTGCT
**
21487525 CTTTTTTGCGCTT
1 -TTTTTTTTGC-T
21487538 TTTTTTTTGCT
1 TTTTTTTTGCT
*
21487549 TTTTTTTGGC-
1 TTTTTTTTGCT
** *
21487559 -GCTTTTTACT
1 TTTTTTTTGCT
*
21487569 CTCTTTTTTGC-
1 -TTTTTTTTGCT
**
21487580 GCTTTTTTGC-
1 TTTTTTTTGCT
21487590 -TTTTTTTG-T
1 TTTTTTTTGCT
21487599 TTTTTTTTGC-
1 TTTTTTTTGCT
*
21487609 -TGTTTTTGCT
1 TTTTTTTTGCT
21487619 GTTTTTTTTGCT
1 -TTTTTTTTGCT
21487631 TTT
1 TTT
21487634 ATTTAAAGAA
Statistics
Matches: 107, Mismatches: 22, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
9 20 0.19
10 17 0.16
11 30 0.28
12 39 0.36
13 1 0.01
ACGTcount: A:0.01, C:0.14, G:0.13, T:0.71
Consensus pattern (11 bp):
TTTTTTTTGCT
Done.