Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 79 of 182
Found at i:23866689 original size:25 final size:25
Alignment explanation
Indices: 23866633--23866681 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
23866623 CCACATCTCT
23866633 TATGAGCTTACCAATTC-TCAGCTCG
1 TATGAGCTTACCAATTCAT-AGCTCG
23866658 TATGAGCTTACCAATTCATAGCTC
1 TATGAGCTTACCAATTCATAGCTC
23866682 ACGAGAGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (25 bp):
TATGAGCTTACCAATTCATAGCTCG
Found at i:23876985 original size:3 final size:3
Alignment explanation
Indices: 23876977--23877001 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
23876967 TCAGTTCACG
23876977 TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA T
23877002 TATAAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:23879462 original size:15 final size:15
Alignment explanation
Indices: 23879444--23879473 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23879434 AAACCACACA
23879444 AATTAAAGTCCCTTT
1 AATTAAAGTCCCTTT
*
23879459 AATTAAATTCCCTTT
1 AATTAAAGTCCCTTT
23879474 CCATGGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.43
Consensus pattern (15 bp):
AATTAAAGTCCCTTT
Found at i:23885487 original size:18 final size:18
Alignment explanation
Indices: 23885448--23885487 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23885438 CATGAGCATG
* *
23885448 GAGATGGAGGTGTCGAGG
1 GAGATGGAGGTGGCGAGC
*
23885466 GAGATGGAGGTGGCGATC
1 GAGATGGAGGTGGCGAGC
23885484 GAGA
1 GAGA
23885488 GGGCGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.07, G:0.53, T:0.15
Consensus pattern (18 bp):
GAGATGGAGGTGGCGAGC
Found at i:23888730 original size:25 final size:25
Alignment explanation
Indices: 23888702--23888775 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
23888692 TTGTTAATAG
*
23888702 AAATATTAAGTGATTAAAATAAAAA
1 AAATATTAAGTGCTTAAAATAAAAA
** * * *
23888727 AAATA-GGAGTGCCTAAAATGATAAG
1 AAATATTAAGTGCTTAAAAT-AAAAA
23888752 AAAT-TTAAGTGCTTAAAATAAAAA
1 AAATATTAAGTGCTTAAAATAAAAA
23888776 TTTATAAAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
24 13 0.36
25 23 0.64
ACGTcount: A:0.57, C:0.04, G:0.14, T:0.26
Consensus pattern (25 bp):
AAATATTAAGTGCTTAAAATAAAAA
Found at i:23891719 original size:25 final size:26
Alignment explanation
Indices: 23891680--23891731 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
23891670 ATAAACTCAT
23891680 TCTTCCGATATTTTTT-AGTAATCCA
1 TCTTCCGATATTTTTTGAGTAATCCA
23891705 TCTTCCGATCA-TTTTTGAGTAATCCA
1 TCTTCCGAT-ATTTTTTGAGTAATCCA
23891731 T
1 T
23891732 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (26 bp):
TCTTCCGATATTTTTTGAGTAATCCA
Found at i:23891725 original size:26 final size:25
Alignment explanation
Indices: 23891680--23891731 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
23891670 ATAAACTCAT
*
23891680 TCTTCCGATATTTTTTAGTAATCCA
1 TCTTCCGATATTTTTGAGTAATCCA
23891705 TCTTCCGATCATTTTTGAGTAATCCA
1 TCTTCCGAT-ATTTTTGAGTAATCCA
23891731 T
1 T
23891732 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (25 bp):
TCTTCCGATATTTTTGAGTAATCCA
Found at i:23894355 original size:18 final size:18
Alignment explanation
Indices: 23894334--23894368 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23894324 AAATACATAC
* *
23894334 ATATATATAAATTATAAA
1 ATATATAAAAAATATAAA
23894352 ATATATAAAAAATATAA
1 ATATATAAAAAATATAA
23894369 GCGTATATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATATAAAAAATATAAA
Found at i:23894575 original size:3 final size:3
Alignment explanation
Indices: 23894492--23894555 Score: 65
Period size: 3 Copynumber: 21.3 Consensus size: 3
23894482 AGTTATGATG
* * * * *
23894492 ATA ATA ACA ATA ATA TTA ATA ATA ATA TTA ATA CTA ATA ATA ATA ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
23894540 TTA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
23894556 CCTAATTAGT
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:23902323 original size:24 final size:23
Alignment explanation
Indices: 23902290--23902337 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
23902280 TGAGCTAATC
*
23902290 GTTATCTCTCCCAAGGAGGGAAA
1 GTTATCTCTCCCAAGAAGGGAAA
23902313 GNTTATCTCTCCCAAGAAGGGAAA
1 G-TTATCTCTCCCAAGAAGGGAAA
23902337 G
1 G
23902338 AGGTCTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.21
Consensus pattern (23 bp):
GTTATCTCTCCCAAGAAGGGAAA
Found at i:23904320 original size:25 final size:25
Alignment explanation
Indices: 23904272--23904320 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23904262 TTACTTCAAA
* **
23904272 AAAATTTTAAGTATGCTTTTATTTT
1 AAAATTTTAAATATGCTTGCATTTT
*
23904297 AAAATTTTAAATATGGTTGCATTT
1 AAAATTTTAAATATGCTTGCATTT
23904321 ATAACTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (25 bp):
AAAATTTTAAATATGCTTGCATTTT
Found at i:23908047 original size:39 final size:40
Alignment explanation
Indices: 23907991--23908082 Score: 116
Period size: 39 Copynumber: 2.3 Consensus size: 40
23907981 AAAAATTATA
* * * *
23907991 TTTAATACAATACAATATTTATTATATTTATTTGT-A-TTT
1 TTTAATATAATAAAATATGTATTATATTTA-TGGTAAGTTT
23908030 TTTAATATAATAAAATATGTATTATATTTATGGTAATGTTT
1 TTTAATATAATAAAATATGTATTATATTTATGGTAA-GTTT
23908071 TTTAATATAATA
1 TTTAATATAATA
23908083 CTTTTTAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
38 3 0.07
39 28 0.61
41 15 0.33
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.53
Consensus pattern (40 bp):
TTTAATATAATAAAATATGTATTATATTTATGGTAAGTTT
Found at i:23912474 original size:12 final size:12
Alignment explanation
Indices: 23912457--23912481 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23912447 AATCTTGTTC
23912457 ATTTCTTTATTT
1 ATTTCTTTATTT
23912469 ATTTCTTTATTT
1 ATTTCTTTATTT
23912481 A
1 A
23912482 CATTTTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTCTTTATTT
Found at i:23916654 original size:6 final size:6
Alignment explanation
Indices: 23916645--23916706 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
23916635 AAGAAAAAGA
* * * *
23916645 AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAA-- AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
23916691 AAAAATC AAAAT- AAAA
1 -AAAATC AAAATC AAAA
23916707 AAAAAGAAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
4 4 0.08
5 4 0.08
6 36 0.72
7 6 0.12
ACGTcount: A:0.71, C:0.08, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:23919199 original size:128 final size:128
Alignment explanation
Indices: 23919047--23919426 Score: 584
Period size: 128 Copynumber: 3.0 Consensus size: 128
23919037 TAGATCACAT
* *
23919047 CAGATTGAAGCCGATATTCCTATCTCCCTGAAGTTATAGTGGAGTGGATTAAAATCACAGATCTT
1 CAGATTGAAG-CGATAATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAGATCTT
* *
23919112 ATCTCTCTGAAGTTACAGTAGAATAGATCGTATCCGGTCTTATCTCCCTGAGATTACAGCGGAG
65 ATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGCGGAG
23919176 CAGATTGAAGCGATAATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAGATCTTA
1 CAGATTGAAGCGATAATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAGATCTTA
* *
23919241 TCTCTCAGAAGTTACAGTAGAGTAGATCATATCAGGTCTTATCTCCCTGAGATTACAGCGGAG
66 TCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGCGGAG
* * ** *
23919304 TAGATTGAAGCGATAATCTTATCTCCCTG-AGATTACAGTGGAGCAGATTAAAAT-AAAGGATCT
1 CAGATTGAAGCGATAATCCTATCTCCCTGAAG-TTACAGTGGAGTGGATTAAAATCACA-GATCT
* * * *
23919367 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTAAGATTACAG
64 TATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
23919427 ACCGAAGAAT
Statistics
Matches: 232, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
127 4 0.02
128 218 0.94
129 10 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (128 bp):
CAGATTGAAGCGATAATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAGATCTTA
TCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGCGGAG
Found at i:23919200 original size:43 final size:42
Alignment explanation
Indices: 23919149--23919352 Score: 173
Period size: 43 Copynumber: 4.8 Consensus size: 42
23919139 TCGTATCCGG
* *
23919149 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCGATAA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGC-ATAA
* * * * *
23919192 TCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAAAATCACAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATT-GAAGCATA-A
* * * * * **
23919236 TCTTATCTCTCAGA-AGTTACAGTAGAGTAGA-TCATATCA-GG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGA-AGCATAA
*
23919277 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCGATAA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGC-ATAA
*
23919320 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATT
23919353 AAAATAAAGG
Statistics
Matches: 128, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
41 27 0.21
42 6 0.05
43 65 0.51
44 30 0.23
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (42 bp):
TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCATAA
Found at i:23919252 original size:44 final size:44
Alignment explanation
Indices: 23919067--23919395 Score: 227
Period size: 44 Copynumber: 7.7 Consensus size: 44
23919057 CCGATATTCC
* *
23919067 TATCTCCCTGAAGTTATAGTGGAGTGGATTAAAATCACAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCACAGATCT
* * * *** *
23919111 TATCTCTCTGAAGTTACAGTAGAATAGA-TCGTATC-C-GGTCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCACAGATCT
* * * * * *
23919152 TATCTCCCTG-AGATTACAGCGGAGCAGATT-GAAGCGATA-ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATC-ACAGATCT
*
23919195 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCACAGATCT
* * * * * *
23919239 TATCTCTCAGAAGTTACAGTAGAGTAGA-TCATAT--CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCACAGATCT
* * * *
23919280 TATCTCCCTG-AGATTACAGCGGAGTAGATT-GAAGCGATA-ATCT
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATC-ACAGATCT
* *
23919323 TATCTCCCTG-AGATTACAGTGGAGCAGATTAAAAT-AAAGGATCT
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATCACA-GATCT
* **
23919367 TATCTCTCTGAAGTTACAGCAGAGTAGAT
1 TATCTCCCTGAAGTTACAGTGGAGTAGAT
23919396 CGCATTAGGT
Statistics
Matches: 217, Mismatches: 51, Indels: 34
0.72 0.17 0.11
Matches are distributed among these distances:
40 4 0.02
41 55 0.25
42 5 0.02
43 67 0.31
44 84 0.39
45 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCACAGATCT
Found at i:23919480 original size:46 final size:46
Alignment explanation
Indices: 23919423--23919543 Score: 149
Period size: 44 Copynumber: 2.7 Consensus size: 46
23919413 CCCTAAGATT
23919423 ACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGA
1 ACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGA
** * * **
23919469 ACAGATTGAAG-ATAGT-A-ATCCTATCTTTCTGAGATTACAGTGGA
1 ACAGACCGAAGAAT-TTCAGATCTTATCTCCCTGAGATTACAGTGGA
*
23919513 ATAGACCGAAGAATTTCAGATCTTATCTCCC
1 ACAGACCGAAGAATTTCAGATCTTATCTCCC
23919544 AAGGTGGAGA
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
44 33 0.57
45 6 0.10
46 19 0.33
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (46 bp):
ACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGA
Found at i:23919495 original size:128 final size:126
Alignment explanation
Indices: 23919058--23919475 Score: 395
Period size: 128 Copynumber: 3.3 Consensus size: 126
23919048 AGATTGAAGC
* * * *** * *
23919058 CGATATTCCTATCTCCCTGA-AGTTATAGTGGAGTGGATTAAAAT-CACAGATCTTATCTCTCTG
1 CGATAATCTTATCTCCCTGAGA-TTACAGTGGAACAGATTAAAATAAAC-GATCTTATCTCTCAG
* * ** * * * *
23919121 AAGTTACAGTAGAATAGATCGTATCCGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
64 AAGTTACAGCAGAGTAGATCACATCAGGTCTTATCTCCCTAAGATTACAGCGAAGTAGATT--AG
* *** *
23919186 CGATAATCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAAAAT-CACAGATCTTATCTCTCAG
1 CGATAATCTTATCTCCCTGAGA-TTACAGTGGAACAGATTAAAATAAAC-GATCTTATCTCTCAG
* * * *
23919249 AAGTTACAGTAGAGTAGATCATATCAGGTCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAG
64 AAGTTACAGCAGAGTAGATCACATCAGGTCTTATCTCCCTAAGATTACAGCGAAGTAGATT--AG
* * *
23919314 CGATAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAA
1 CGATAATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAACGATCTTATCTCTCAGAA
* * *
23919379 GTTACAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTAAGATTACAGACCGAAG-A-ATT-T
66 GTTACAGCAGAGTAGATCACATCAGGTCTTATCTCCCTAAGATTACAG--CGAAGTAGATTAG
*
23919439 C-A-GATCTTATCTCCCTGAGATTACAGTGGAACAGATT
1 CGATAATCTTATCTCCCTGAGATTACAGTGGAACAGATT
23919476 GAAGATAGTA
Statistics
Matches: 264, Mismatches: 22, Indels: 13
0.88 0.07 0.04
Matches are distributed among these distances:
123 33 0.12
124 1 0.00
125 1 0.00
128 222 0.84
129 3 0.01
130 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (126 bp):
CGATAATCTTATCTCCCTGAGATTACAGTGGAACAGATTAAAATAAACGATCTTATCTCTCAGAA
GTTACAGCAGAGTAGATCACATCAGGTCTTATCTCCCTAAGATTACAGCGAAGTAGATTAG
Found at i:23919667 original size:44 final size:44
Alignment explanation
Indices: 23919618--23919802 Score: 119
Period size: 44 Copynumber: 4.2 Consensus size: 44
23919608 CCAGTAATTC
*
23919618 TATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTATAGATCT
1 TATCTCCCTGGGTAGCAATGGAATAGATTGAAGATTATAGATCT
** * * ** * ** *
23919662 TATCTCCCTAAGCAGTAATGGAGCAGATCGAAGA-TAGCGAATTT
1 TATCTCCCTGGGTAGCAATGGAATAGATTGAAGATTATAG-ATCT
* * * * **
23919706 TACCTCCCTAAGGTTA-CAATGGAGTACATTGAAG-CCAGTA-AT-T
1 TATCTCCCT--GGGTAGCAATGGAATAGATTGAAGATTA-TAGATCT
* *
23919749 CTATCTCCCTGGGTAGCAGTGGAATAGATTGAGGATTATAGATCT
1 -TATCTCCCTGGGTAGCAATGGAATAGATTGAAGATTATAGATCT
23919794 TATCTCCCT
1 TATCTCCCT
23919803 AAGCAGTAGT
Statistics
Matches: 100, Mismatches: 31, Indels: 20
0.66 0.21 0.13
Matches are distributed among these distances:
42 4 0.04
43 20 0.20
44 59 0.59
45 16 0.16
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGGGTAGCAATGGAATAGATTGAAGATTATAGATCT
Found at i:23919729 original size:132 final size:132
Alignment explanation
Indices: 23919572--23919874 Score: 552
Period size: 132 Copynumber: 2.3 Consensus size: 132
23919562 GATGGCAGAC
* * *
23919572 TTTACCTCCCTACGATTACAGTGGAGTACTTTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGT
1 TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGT
23919637 GGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGATAGCGA
66 GGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGATAGCGA
23919702 AT
131 AT
*
23919704 TTTACCTCCCTAAGGTTACAATGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGT
1 TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGT
* *
23919769 GGAATAGATTGAGGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGCGA
66 GGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGATAGCGA
23919834 AT
131 AT
23919836 TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCA
1 TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCA
23919875 ACAAGTCTTA
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 164 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (132 bp):
TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGT
GGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGATAGCGA
AT
Found at i:23920242 original size:12 final size:12
Alignment explanation
Indices: 23920225--23920249 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23920215 AATCTTGTTC
23920225 ATTTCTTTATTT
1 ATTTCTTTATTT
23920237 ATTTCTTTATTT
1 ATTTCTTTATTT
23920249 A
1 A
23920250 CATTTTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTCTTTATTT
Found at i:23934550 original size:14 final size:15
Alignment explanation
Indices: 23934531--23934561 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23934521 TTTCAAGAAT
23934531 ATTTAATAA-CAAAA
1 ATTTAATAATCAAAA
23934545 ATTTAATAATCAAAA
1 ATTTAATAATCAAAA
23934560 AT
1 AT
23934562 CTAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
ATTTAATAATCAAAA
Found at i:23938932 original size:85 final size:83
Alignment explanation
Indices: 23938837--23938996 Score: 207
Period size: 84 Copynumber: 1.9 Consensus size: 83
23938827 TTTATTGGGC
* * * *
23938837 TGCAGAAGCATA-AAGAAGACAATGATTATTTTATATAG-ATTTTTTTTATTCAATTATGTTTGA
1 TGCAAAAGCATACAA-AAGAC--TGAATATTTTATATAGAATTTTTTTGATTCAATTAGGTTTGA
23938900 GTAATAAAATATGAGCCATATT
63 GTAATAAAA-ATGAGCCATATT
* *
23938922 TGCAAAAGCATACAAAAGGCTGAATATTTTATATAGAATTTTTTTGGTTCAATTAGGTTTGAGTA
1 TGCAAAAGCATACAAAAGACTGAATATTTTATATAGAATTTTTTTGATTCAATTAGGTTTGAGTA
*
23938987 CTAAAAATGA
66 ATAAAAATGA
23938997 CGAGGTATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
83 19 0.29
84 30 0.45
85 15 0.23
86 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (83 bp):
TGCAAAAGCATACAAAAGACTGAATATTTTATATAGAATTTTTTTGATTCAATTAGGTTTGAGTA
ATAAAAATGAGCCATATT
Found at i:23940193 original size:18 final size:18
Alignment explanation
Indices: 23940153--23940195 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
23940143 AGCCTCCTTT
23940153 TCATCATCCGAAAACTCA
1 TCATCATCCGAAAACTCA
* * * *
23940171 GCATCATCTGATAACTCC
1 TCATCATCCGAAAACTCA
23940189 TCATCAT
1 TCATCAT
23940196 TCTCACCGGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.28
Consensus pattern (18 bp):
TCATCATCCGAAAACTCA
Found at i:23942100 original size:138 final size:135
Alignment explanation
Indices: 23941850--23942103 Score: 312
Period size: 138 Copynumber: 1.9 Consensus size: 135
23941840 AATCACTTCT
* *
23941850 TCAATAGGTAAACTCAGATTCCCTTCTGGTTTTGACTCTTCTTCCACCTTCAGCGTGCAGCCTGA
1 TCAATAGATAAACTCAGATTCCCTTCTGGTTTTGACTCTTCTTCCACCTTCAGCGTACAGCCTGA
* ** * *
23941915 CTCCCCTCCAACTGGCTCAGACCCACAAACAATTGGCTTGAACCCATCAAATCCTTCTACTTTTG
66 CTCACCTCCAACCAGCGCAGACCCACAAACAATTGGCTTGAAACCATCAAATCCTTCTACTTTTG
23941980 ATTCC
131 ATTCC
* * * * *
23941985 TCAATAGATAAATTCAGATTGCTTTCTGGTTTTGACTTATCTTCTTCTACCTTCA-CTGTACGGC
1 TCAATAGATAAACTCAGATTCCCTTCTGGTTTTGAC---TCTTCTTCCACCTTCAGC-GTACAGC
* * ** *
23942049 CTGGCTCACCTTCAACCAGCGCAGACCCATGAACAATTGGTTTGAAACCATCAAA
62 CTGACTCACCTCCAACCAGCGCAGACCCACAAACAATTGGCTTGAAACCATCAAA
23942104 ATCTGACTCA
Statistics
Matches: 98, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
135 32 0.33
137 1 0.01
138 65 0.66
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (135 bp):
TCAATAGATAAACTCAGATTCCCTTCTGGTTTTGACTCTTCTTCCACCTTCAGCGTACAGCCTGA
CTCACCTCCAACCAGCGCAGACCCACAAACAATTGGCTTGAAACCATCAAATCCTTCTACTTTTG
ATTCC
Found at i:23943020 original size:16 final size:17
Alignment explanation
Indices: 23942991--23943023 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23942981 TTTTATAAAA
*
23942991 TTTTAATATGTTTATTT
1 TTTTAATATATTTATTT
23943008 TTTTAATA-ATTTATTT
1 TTTTAATATATTTATTT
23943024 ACTTTGAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTAATATATTTATTT
Found at i:23943969 original size:7 final size:7
Alignment explanation
Indices: 23943957--23943991 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
23943947 TTCTTTTCAA
23943957 CTCAATT
1 CTCAATT
23943964 CTCAATT
1 CTCAATT
*
23943971 CTCAATC
1 CTCAATT
23943978 CTCAATT
1 CTCAATT
23943985 CTCAATT
1 CTCAATT
23943992 ATTTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (7 bp):
CTCAATT
Found at i:23952613 original size:42 final size:41
Alignment explanation
Indices: 23952550--23952633 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 41
23952540 TCGAAGACTT
* * *
23952550 TGGATGCTACCCAAAGTAATTACTCAACCATTGAGAAAGAA
1 TGGATGCTACCCAAAGCAATTACACAACCACTGAGAAAGAA
* *
23952591 NTGGATGCTGCGCAAAGCAATTACACAACCACTGAGAAAGAA
1 -TGGATGCTACCCAAAGCAATTACACAACCACTGAGAAAGAA
23952633 T
1 T
23952634 TATTAGTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 1 0.03
42 36 0.97
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.19
Consensus pattern (41 bp):
TGGATGCTACCCAAAGCAATTACACAACCACTGAGAAAGAA
Found at i:23954568 original size:18 final size:19
Alignment explanation
Indices: 23954531--23954576 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
23954521 ACATTTTAAT
* *
23954531 TTTAATTTTATTATTATTA
1 TTTATTTTTACTATTATTA
23954550 TTTATTTTTACTATT-TTA
1 TTTATTTTTACTATTATTA
23954568 TTTCATTTT
1 TTT-ATTTT
23954577 ATTTTTGCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATTTTTACTATTATTA
Found at i:23954577 original size:18 final size:18
Alignment explanation
Indices: 23954535--23954577 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
23954525 TTTAATTTTA
*
23954535 ATTTTATTATTATTATTT
1 ATTTTACTATTATTATTT
23954553 ATTTTTACTATT-TTATTT
1 A-TTTTACTATTATTATTT
23954571 CATTTTA
1 -ATTTTA
23954578 TTTTTGCAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTACTATTATTATTT
Found at i:23954811 original size:7 final size:7
Alignment explanation
Indices: 23954801--23954826 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23954791 AAAAATTAAA
23954801 AAAAATC
1 AAAAATC
23954808 AAAAATC
1 AAAAATC
23954815 AAAAATC
1 AAAAATC
23954822 AAAAA
1 AAAAA
23954827 ACCCTCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATC
Found at i:23959092 original size:13 final size:13
Alignment explanation
Indices: 23959061--23959124 Score: 71
Period size: 13 Copynumber: 5.0 Consensus size: 13
23959051 CTTGATTAAT
23959061 GACTTGATGAAAAA
1 GACTTGATG-AAAA
*
23959075 CACTTGATGAAAA
1 GACTTGATGAAAA
23959088 GACTTGATGAAAA
1 GACTTGATGAAAA
*
23959101 G-CTTGAT-AAGA
1 GACTTGATGAAAA
23959112 -ACTTGATGCAAAA
1 GACTTGATG-AAAA
23959125 CTTAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.21
12 6 0.14
13 20 0.47
14 8 0.19
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (13 bp):
GACTTGATGAAAA
Found at i:23959126 original size:12 final size:11
Alignment explanation
Indices: 23959043--23959127 Score: 64
Period size: 12 Copynumber: 7.0 Consensus size: 11
23959033 GTATTCCAAA
23959043 GATGAAAACTT
1 GATGAAAACTT
* *
23959054 GATTAATGACTT
1 GATGAA-AACTT
23959066 GATGAAAAACACTT
1 GATG--AAA-ACTT
23959080 GATGAAAAGACTT
1 GATG-AAA-ACTT
23959093 GATGAAAAGCTT
1 GATGAAAA-CTT
23959105 GAT-AAGAACTT
1 GATGAA-AACTT
23959116 GATGCAAAACTT
1 GATG-AAAACTT
23959128 AAAAAAAAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
11 14 0.23
12 23 0.38
13 14 0.23
14 10 0.16
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.27
Consensus pattern (11 bp):
GATGAAAACTT
Found at i:23961515 original size:24 final size:24
Alignment explanation
Indices: 23961488--23961533 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
23961478 CTTTGACAAC
23961488 ATAAACACA-TCAACTAGAGACCGT
1 ATAAACACAGTCAACTAG-GACCGT
**
23961512 ATAATTACAGTCAACTAGGACC
1 ATAAACACAGTCAACTAGGACC
23961534 TTGAGTTGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.43, C:0.24, G:0.13, T:0.20
Consensus pattern (24 bp):
ATAAACACAGTCAACTAGGACCGT
Found at i:23974144 original size:17 final size:15
Alignment explanation
Indices: 23974112--23974146 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
23974102 TTAAAAGTAA
23974112 AATAATATAACATAC
1 AATAATATAACATAC
23974127 AATAACTATAATCATAC
1 AATAA-TATAA-CATAC
23974144 AAT
1 AAT
23974147 TATTCAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 5 0.28
17 8 0.44
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (15 bp):
AATAATATAACATAC
Found at i:23979424 original size:13 final size:13
Alignment explanation
Indices: 23979406--23979432 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23979396 AAATATGCGA
23979406 ATATATATATGGT
1 ATATATATATGGT
23979419 ATATATATATGGT
1 ATATATATATGGT
23979432 A
1 A
23979433 GCCGAATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (13 bp):
ATATATATATGGT
Found at i:23980720 original size:19 final size:19
Alignment explanation
Indices: 23980696--23980749 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
23980686 AATCTTCAAG
23980696 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23980715 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23980734 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23980750 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23980725 original size:36 final size:36
Alignment explanation
Indices: 23980685--23980756 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
23980675 TATGGAAACA
23980685 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
23980721 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
23980757 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:23980740 original size:38 final size:40
Alignment explanation
Indices: 23980696--23980772 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
23980686 AATCTTCAAG
23980696 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
23980734 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
23980773 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:23980948 original size:58 final size:58
Alignment explanation
Indices: 23980877--23980993 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
23980867 CCCTTCATTG
*
23980877 TAAAAAAAAAAGAGGAAGAGGAGAAAAATAAATAAAAAAGGAGAACGATTGGCAGTTT
1 TAAAAAAAAAAGAGGAAGAGGAGAAAAATAAATAAAAAAGGAGAACGATTGCCAGTTT
* *
23980935 TAAAAAAAAAAGAGGAAGAGGAGAAAAATCAATAAAAAGGGAGAACGATTGCCAGTTT
1 TAAAAAAAAAAGAGGAAGAGGAGAAAAATAAATAAAAAAGGAGAACGATTGCCAGTTT
23980993 T
1 T
23980994 TTTAAAGGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.56, C:0.05, G:0.24, T:0.15
Consensus pattern (58 bp):
TAAAAAAAAAAGAGGAAGAGGAGAAAAATAAATAAAAAAGGAGAACGATTGCCAGTTT
Found at i:23981907 original size:48 final size:48
Alignment explanation
Indices: 23981836--23981932 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
23981826 TTTTGGACTA
* *
23981836 ACTCATCTTGAAGAGAATAAAATGTTGTGCCCTAACGCATTGGGTGTG
1 ACTCAGCTTGAAGAGAATAAAATGTTGTACCCTAACGCATTGGGTGTG
23981884 ACTCAGCTTGAAGAGAATAAAATGTTGTACCCTAACGCATTGGGTGTG
1 ACTCAGCTTGAAGAGAATAAAATGTTGTACCCTAACGCATTGGGTGTG
23981932 A
1 A
23981933 TATTTTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (48 bp):
ACTCAGCTTGAAGAGAATAAAATGTTGTACCCTAACGCATTGGGTGTG
Found at i:23987429 original size:89 final size:88
Alignment explanation
Indices: 23986886--23987433 Score: 371
Period size: 89 Copynumber: 6.2 Consensus size: 88
23986876 CAGATCAGTA
* * * * * * *
23986886 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCTT
1 AAGATAGCAGATCTTGTCTACCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
** * *
23986950 CCCATACTGGTGGCAAAGTAGATCG
66 CATATATTGGCGG--AAGTAGATCG
* * * ** *
23986975 AAGAAAGCAGATCTTGTCT--TCAT-GTATTGGCATGAAGTAGATCGAATG-TAGCAGATCTTGT
1 AAGATAGCAGATCTTGTCTACCCATACTGGTGGC--GAAGTAGATCGAA-GAAAGCAGATCTTGT
* * * *
23987036 CTTCCTATATTGGTAGCAAAGTGGATCG
63 CTTCATATATTGG-CG-GAAGTAGATCG
* * * *
23987064 AAGAT-GCAGATCTTCTCTCCCCAGACTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTT
1 AAGATAGCAGATCTTGTCTACCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
23987128 CATGTATTGGCGTGAAGTAGATCG
66 CATATATTGGCG-GAAGTAGATCG
* * * * * * *
23987152 AAGATAGCAGATCTTGTCTACCTATATTGGTAGCGAAGTGGATTGAAG-ATGCAGATCTTCTCTT
1 AAGATAGCAGATCTTGTCTACCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
**
23987216 CCCATACTGGTGGC-GAAGTAGATCG
66 --CATA-TATTGGCGGAAGTAGATCG
* * *** * * * * ** * *
23987241 AAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATTGAAGATGGCAGAACCTGTCTT
1 AAGATAGCAGATCTTGTCTACCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * *
23987305 CCTATATTGGTAGCGAAGTGGATCG
66 CATATATTGG-CG-GAAGTAGATCG
* *
23987330 AAGAT-GCAGATCTTGTC-ATCCCATACTGGTGGCAAAGTAGACCGAAGAAAGCAGATCTTGTCT
1 AAGATAGCAGATCTTGTCTA-CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
23987393 TCATGTATTGGCGTTAAATAGATCG
65 TCATATATTGGCG-GAAGTAGATCG
*
23987418 AAGATATCAGATCTTG
1 AAGATAGCAGATCTTG
23987434 CCTTCCTGCA
Statistics
Matches: 354, Mismatches: 85, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
86 8 0.02
87 5 0.01
88 99 0.28
89 226 0.64
90 6 0.02
91 10 0.03
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (88 bp):
AAGATAGCAGATCTTGTCTACCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATATATTGGCGGAAGTAGATCG
Found at i:23987430 original size:44 final size:44
Alignment explanation
Indices: 23986886--23987438 Score: 368
Period size: 44 Copynumber: 12.5 Consensus size: 44
23986876 CAGATCAGTA
* * * * * *
23986886 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
*** * *
23986931 AAGAT-GCAGATCTTGTCTTCCCATACTGGTG-GCAAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCG
* *
23986975 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * ** *
23987019 AATG-TAGCAGATCTTGTCTTCCTATATTGGTAGCAAAGTGGATCG
1 AA-GATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
* * * * *
23987064 AAGAT-GCAGATCTTCTCTCCCCA-G-ACTGGTGGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCT--TCATGTATTGG-CGTGAAGTAGATCG
* *
23987108 AAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * * * * *
23987152 AAGATAGCAGATCTTGTCTACCTATATTGGTAGCGAAGTGGATTG
1 AAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
* *** * * *
23987197 AAGAT-GCAGATCTTCTCTTCCCATACTGGTGGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
* *
23987241 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * * * * * *
23987285 AAGATGGCAGAACCTGTCTTCCTATATTGGTAGCGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
* *** * * *
23987330 AAGAT-GCAGATCTTGTCATCCCATACTGGTG-GCAAAGTAGACCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCG
* * *
23987374 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTTAAATAGATCG
1 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* *
23987418 AAGATATCAGATCTTGCCTTC
1 AAGATAGCAGATCTTGTCTTC
23987439 CTGCACCGAC
Statistics
Matches: 398, Mismatches: 91, Indels: 39
0.75 0.17 0.07
Matches are distributed among these distances:
42 2 0.01
43 4 0.01
44 268 0.67
45 122 0.31
46 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (44 bp):
AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
Found at i:23987465 original size:45 final size:45
Alignment explanation
Indices: 23987412--23987554 Score: 112
Period size: 44 Copynumber: 3.2 Consensus size: 45
23987402 GGCGTTAAAT
*
23987412 AGATCGAAGATATCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
1 AGATCGAAGATACCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
* * * **** * * *
23987457 AGATCGAAGACACCAG-CCTTGCCTCCCTGGGTTG-CAACGGAGT
1 AGATCGAAGATACCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
* * * *
23987500 AG-GCTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
1 AGATC-GAAGATACCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
*
23987545 AAATCGAAGA
1 AGATCGAAGA
23987555 CACTAGNNNN
Statistics
Matches: 65, Mismatches: 29, Indels: 8
0.64 0.28 0.08
Matches are distributed among these distances:
42 1 0.02
43 15 0.23
44 24 0.37
45 24 0.37
46 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.24, T:0.18
Consensus pattern (45 bp):
AGATCGAAGATACCAGATCTTGCCTTCCTGCACCGACAGCGAAGC
Found at i:23987466 original size:133 final size:133
Alignment explanation
Indices: 23986886--23987440 Score: 896
Period size: 133 Copynumber: 4.2 Consensus size: 133
23986876 CAGATCAGTA
* *
23986886 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 AAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTCTCTTC
*
23986951 CCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
66 CCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23987016 TCG
131 TCG
* *
23987019 AATG-TAGCAGATCTTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAGATGCAGATCTTCTCTC
1 AA-GATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTCTCTT
* * *
23987083 CCCAGACTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
23987148 ATCG
130 ATCG
* *
23987152 AAGATAGCAGATCTTGTCTACCTATATTGGTAGCGAAGTGGATTGAAGATGCAGATCTTCTCTTC
1 AAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTCTCTTC
*
23987217 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
*
23987282 TTG
131 TCG
* * * * *
23987285 AAGATGGCAGAACCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCATC
1 AAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTCTCTTC
* * *
23987350 CCATACTGGTGGCAAAGTAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTTAAATAGA
66 CCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23987415 TCG
131 TCG
* *
23987418 AAGATATCAGATCTTGCCTTCCT
1 AAGATAGCAGATCTTGTCTTCCT
23987441 GCACCGACAG
Statistics
Matches: 388, Mismatches: 32, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
132 1 0.00
133 386 0.99
134 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (133 bp):
AAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTCTCTTC
CCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
TCG
Found at i:23988506 original size:41 final size:41
Alignment explanation
Indices: 23988461--23988607 Score: 249
Period size: 41 Copynumber: 3.6 Consensus size: 41
23988451 ACTAACAATT
* * * **
23988461 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGTGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
23988502 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
23988543 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
23988584 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
23988608 TTATCTCATT
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
Found at i:23996497 original size:41 final size:41
Alignment explanation
Indices: 23996395--23996500 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
23996385 ACTGGCAATT
* * * *
23996395 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
23996436 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
23996477 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
23996501 TTATCTCATT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACAATTCACCGGCATCA
Found at i:23998493 original size:44 final size:44
Alignment explanation
Indices: 23998409--23998509 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
23998399 GGCTGTTACA
* *
23998409 GGAATAGGTTGAAGATTGAGAATTCTATCTCCTTAGGCAGCAGT
1 GGAATAGGTTGAAGATTGAGAATTATATCTCCTGAGGCAGCAGT
* *
23998453 GGAATAGATTGAAGATTGTGAATCATATATC-CCTGA-GCAGCAGT
1 GGAATAGGTTGAAGATTGAGAAT--TATATCTCCTGAGGCAGCAGT
*
23998497 GGAGTAGGTTGAA
1 GGAATAGGTTGAA
23998510 AATAGCAGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
44 40 0.82
45 4 0.08
46 5 0.10
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.28
Consensus pattern (44 bp):
GGAATAGGTTGAAGATTGAGAATTATATCTCCTGAGGCAGCAGT
Found at i:23998948 original size:101 final size:101
Alignment explanation
Indices: 23998760--23998949 Score: 247
Period size: 101 Copynumber: 1.9 Consensus size: 101
23998750 AGTGGAGCAG
** * *
23998760 ATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCAGTGTAATGGAATAGATTGAAGCTACGACG
1 ATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCAGTGTAACAGAACAGATTGAAGCCACGACG
* * *
23998825 GTGAATCTTGTTTCCTCAACATTGAAATTTAAAAAT
66 GCGAATCTTGTTGCCCCAACATTGAAATTTAAAAAT
*** * *
23998861 ATTGAAGCCGCAACGGCGAATCTTACTTTTCTGGC-GTTGTAGCAGAGCAGATTGAAGCCACGAC
1 ATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCAG-TGTAACAGAACAGATTGAAGCCACGAC
*
23998925 GGCGAATCTTGTTGCCCCGACATTG
65 GGCGAATCTTGTTGCCCCAACATTG
23998950 CAGATGGTAA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
100 1 0.01
101 74 0.99
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (101 bp):
ATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCAGTGTAACAGAACAGATTGAAGCCACGACG
GCGAATCTTGTTGCCCCAACATTGAAATTTAAAAAT
Found at i:23999569 original size:19 final size:19
Alignment explanation
Indices: 23999545--23999596 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
23999535 AATCTTCAAG
23999545 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23999564 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23999583 GATATGCAATCTTA
1 GATATGCAATCTTA
23999597 AAAGATATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23999589 original size:38 final size:40
Alignment explanation
Indices: 23999545--23999621 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
23999535 AATCTTCAAG
23999545 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
23999583 GATATGCAATCTTAAAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
23999622 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:23999805 original size:60 final size:60
Alignment explanation
Indices: 23999726--23999846 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
23999716 CCCTTCATTG
23999726 TAAAAAAAAAAAGAAGAAGAGGAGAAAAATCAATAAAAAGGGAGAACGATTGGCAGTTTT
1 TAAAAAAAAAAAGAAGAAGAGGAGAAAAATCAATAAAAAGGGAGAACGATTGGCAGTTTT
* *
23999786 TAAAAAAAAAAAGAGGAAGAGGAGAAAAATCAATAAAAATGGAGAACGATTGGCAGTTTT
1 TAAAAAAAAAAAGAAGAAGAGGAGAAAAATCAATAAAAAGGGAGAACGATTGGCAGTTTT
23999846 T
1 T
23999847 TTAAAGGTGG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.55, C:0.05, G:0.23, T:0.17
Consensus pattern (60 bp):
TAAAAAAAAAAAGAAGAAGAGGAGAAAAATCAATAAAAAGGGAGAACGATTGGCAGTTTT
Found at i:24016139 original size:66 final size:66
Alignment explanation
Indices: 24016033--24016167 Score: 150
Period size: 66 Copynumber: 2.0 Consensus size: 66
24016023 GTCAGACAGG
* * **
24016033 TGATGGTTCATCTTTTCCAGTGCAGTACACGACATCTCCTTGCCC-TTGCTGATGGCTGCGGAAC
1 TGATGGTTCACCTTTTCCAGTGCAGTACACGACACCTCCTTGCCCTTTG-TGATCACTGCGGAAC
24016097 CA
65 CA
* * * *
24016099 TGATGGTTCACCTTTTGCAGTGCA-T-CAACTGATACCTCCTTTCCCTTTGTGATCACTGTGGAA
1 TGATGGTTCACCTTTTCCAGTGCAGTAC-AC-GACACCTCCTTGCCCTTTGTGATCACTGCGGAA
24016162 CCA
64 CCA
24016165 TGA
1 TGA
24016168 CCGCAAGAGC
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
64 1 0.02
65 3 0.05
66 51 0.88
67 3 0.05
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (66 bp):
TGATGGTTCACCTTTTCCAGTGCAGTACACGACACCTCCTTGCCCTTTGTGATCACTGCGGAACC
A
Found at i:24018231 original size:65 final size:66
Alignment explanation
Indices: 24018139--24018267 Score: 170
Period size: 65 Copynumber: 2.0 Consensus size: 66
24018129 TAGCTTAGAA
* ** * **
24018139 AAGTTATGGTGCATTATAAGATGTAATGAGCATTATCCTATGTGGATTAACCAGTAACTTACAAA
1 AAGTTATGATGCATTATAAGAAATAATGAGCATTACCCTATGCAGATTAACCAGTAACTTACAAA
24018204 C
66 C
* * *
24018205 AAGTTATGAT-CATTGTAAGAAATAATGAGCATTACCCTATGCAGATTAATCGGTAACTTACAA
1 AAGTTATGATGCATTATAAGAAATAATGAGCATTACCCTATGCAGATTAACCAGTAACTTACAA
24018268 GTTATGATGC
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
65 45 0.83
66 9 0.17
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (66 bp):
AAGTTATGATGCATTATAAGAAATAATGAGCATTACCCTATGCAGATTAACCAGTAACTTACAAA
C
Found at i:24020309 original size:22 final size:21
Alignment explanation
Indices: 24020276--24020321 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
24020266 GTTATGAAAG
24020276 TTTTAGATAATTTATAAAACTT
1 TTTTAGATAATTTATAAAA-TT
*
24020298 TTTTATGA-AATTTATATAATT
1 TTTTA-GATAATTTATAAAATT
24020319 TTT
1 TTT
24020322 ACTTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 15 0.68
23 2 0.09
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (21 bp):
TTTTAGATAATTTATAAAATT
Found at i:24021201 original size:2 final size:2
Alignment explanation
Indices: 24021194--24021225 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24021184 ATCGCCATCG
24021194 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
24021226 ACGCACGCGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:24024630 original size:111 final size:111
Alignment explanation
Indices: 24024469--24024743 Score: 306
Period size: 111 Copynumber: 2.5 Consensus size: 111
24024459 AATGCATCAA
* * * *
24024469 CAACAACTAGCTGCGCTAGCTCAGCAACAGTCCTTTCTCATGGCTGCTGCAGCTAAATCTGCTCC
1 CAACAACTAGCTACGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTGCTCC
* *
24024534 TGGAAA-TGCTCAACAGTCTCCATCCAATGGCACCATGATACCCACT
66 TGGAAACAG-TCAACAGCCTCCATCCAATGGCACCATGATACCCACT
* * *
24024580 CAACAACTAGCTATGTTAGCACAGCAACAGTCCCTTCTTATGGCTGCTGCAGCTAAAGCTGCTCC
1 CAACAACTAGCTACGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTGCTCC
* * *
24024645 TGGAAACAGTCAACAGCCTCCAT-CAA--CCACCACAAGCTTACCCACT
66 TGGAAACAGTCAACAGCCTCCATCCAATGGCA-C-CATG-ATACCCACT
** * * *
24024691 CAACAACAACTAGCTTTGCTAGCGCATCAACAGTCCCTCCTCATGGCTGCTGC
1 ---CAACAACTAGCTACGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGC
24024744 TGGAAATATG
Statistics
Matches: 139, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
108 2 0.01
109 1 0.01
110 6 0.04
111 85 0.61
112 1 0.01
114 44 0.32
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.22
Consensus pattern (111 bp):
CAACAACTAGCTACGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTGCTCC
TGGAAACAGTCAACAGCCTCCATCCAATGGCACCATGATACCCACT
Found at i:24032408 original size:16 final size:16
Alignment explanation
Indices: 24032387--24032417 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24032377 ATTGAGTTGA
*
24032387 GAAAATTATTTAATTG
1 GAAAATTAATTAATTG
24032403 GAAAATTAATTAATT
1 GAAAATTAATTAATT
24032418 TAAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
GAAAATTAATTAATTG
Found at i:24037177 original size:25 final size:25
Alignment explanation
Indices: 24037132--24037194 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
24037122 TCGAGCTACA
*
24037132 TAACGGGAAGCTCATATGAGCCATG
1 TAACGGGAAGCTCAGATGAGCCATG
*
24037157 TAACGGGAAGCTTCGGA-GAGCCAT-
1 TAACGGGAAGC-TCAGATGAGCCATG
* *
24037181 TATCAGGAAGCTCA
1 TAACGGGAAGCTCA
24037195 TACAAACCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
23 2 0.06
24 9 0.28
25 18 0.56
26 3 0.09
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.19
Consensus pattern (25 bp):
TAACGGGAAGCTCAGATGAGCCATG
Found at i:24037274 original size:25 final size:26
Alignment explanation
Indices: 24037246--24037304 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
24037236 AAAGCTCTGG
*
24037246 AGAGTCATTAA-CGAGAAGCTCACAA
1 AGAGCCATTAATCGAGAAGCTCACAA
* * *
24037271 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCGAGAAGCTCACAA
24037297 AGAGCCAT
1 AGAGCCAT
24037305 ATATCGGGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCGAGAAGCTCACAA
Found at i:24037319 original size:26 final size:26
Alignment explanation
Indices: 24037260--24037313 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
24037250 TCATTAACGA
*
24037260 GAAGCTCACAAAGAGCCTTTAATCGG
1 GAAGCTCACAAAGAGCCTATAATCGG
*
24037286 GAAGCTCACGAAGAGCC-ATATATCGG
1 GAAGCTCACAAAGAGCCTATA-ATCGG
24037312 GA
1 GA
24037314 CACTCATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCTATAATCGG
Found at i:24041803 original size:28 final size:28
Alignment explanation
Indices: 24041771--24041870 Score: 155
Period size: 28 Copynumber: 3.6 Consensus size: 28
24041761 TAATGAGATT
*
24041771 AGCACTAAGTGTGTGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
*
24041799 AGCACTAAGTGTGCGAGTTTAATGGTAA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
* * *
24041827 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTGTAA
24041855 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
24041871 ACTTATTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTAATTGTAA
Found at i:24048217 original size:40 final size:40
Alignment explanation
Indices: 24048173--24048270 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
24048163 AAAAATGCAA
* *
24048173 CTAAAAATCAAGCATTAGCAGCGCTTTTTGAAAAACGCCG
1 CTAAAAATCAAGCACTAGCAGCACTTTTTGAAAAACGCCG
* * * **
24048213 CTAAAGATCGAGCACTAGCGGCACTTTTTGGTAAACGCCG
1 CTAAAAATCAAGCACTAGCAGCACTTTTTGAAAAACGCCG
* *
24048253 CTAGAAAT-GAGCACTAGC
1 CTAAAAATCAAGCACTAGC
24048271 GGCGTTTTTC
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.20
40 39 0.80
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.21
Consensus pattern (40 bp):
CTAAAAATCAAGCACTAGCAGCACTTTTTGAAAAACGCCG
Found at i:24048405 original size:41 final size:41
Alignment explanation
Indices: 24048349--24048563 Score: 229
Period size: 41 Copynumber: 5.3 Consensus size: 41
24048339 TTAGCGACGT
* * * **
24048349 TTTTTGAAAAAGCGCCGCTAATGCTTGGGGCTTCAGCGGTG
1 TTTTTAAAAAAGCGCCGCTAATGCTTCGGGCTTTAGCGGCA
* *
24048390 TTTTTAAAAAAGCGCCGCTAATG-TTCAAGGCTTTAGCGGCG
1 TTTTTAAAAAAGCGCCGCTAATGCTTC-GGGCTTTAGCGGCA
* * * * *
24048431 TTTTTAAAAAAGCGTCACTAATGCTCCGTGATTTAGCGGCA
1 TTTTTAAAAAAGCGCCGCTAATGCTTCGGGCTTTAGCGGCA
* *
24048472 TTTTT-AAAAAGCGCCGCTAATGCTTCGTGCTTTAGCGTCA
1 TTTTTAAAAAAGCGCCGCTAATGCTTCGGGCTTTAGCGGCA
* ** *
24048512 TTTTTAAAAAAGCGCTGCTAATGC-TCGGGAATTAGCGGCT
1 TTTTTAAAAAAGCGCCGCTAATGCTTCGGGCTTTAGCGGCA
*
24048552 TTTTTGAAAAAG
1 TTTTTAAAAAAG
24048564 AGCGGCAAAT
Statistics
Matches: 147, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
40 59 0.40
41 86 0.59
42 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (41 bp):
TTTTTAAAAAAGCGCCGCTAATGCTTCGGGCTTTAGCGGCA
Found at i:24048576 original size:81 final size:80
Alignment explanation
Indices: 24048349--24048563 Score: 231
Period size: 81 Copynumber: 2.6 Consensus size: 80
24048339 TTAGCGACGT
* * * **
24048349 TTTTTGAAAAAGCGCCGCTAATGCTTGGGGCTTCAGCGG-TGTTTTTAAAAAAGCGCCGCTAATG
1 TTTTTAAAAAAGCGCTGCTAATGCTCGGGAATT-AGCGGCT-TTTTT-AAAAAGCGCCGCTAATG
*
24048413 -TTCAAGGCTTTAGCGGCG
63 CTTC-AGGCTTTAGCGGCA
* * * *
24048431 TTTTTAAAAAAGCG-TCACTAATGCTCCGTGATTTAGCGGCATTTTTAAAAAGCGCCGCTAATGC
1 TTTTTAAAAAAGCGCT-GCTAATGCT-CGGGAATTAGCGGCTTTTTTAAAAAGCGCCGCTAATGC
*
24048495 TTC-GTGCTTTAGCGTCA
64 TTCAG-GCTTTAGCGGCA
24048512 TTTTTAAAAAAGCGCTGCTAATGCTCGGGAATTAGCGGCTTTTTTGAAAAAG
1 TTTTTAAAAAAGCGCTGCTAATGCTCGGGAATTAGCGGCTTTTTT-AAAAAG
24048564 AGCGGCAAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
80 18 0.16
81 55 0.49
82 35 0.31
83 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (80 bp):
TTTTTAAAAAAGCGCTGCTAATGCTCGGGAATTAGCGGCTTTTTTAAAAAGCGCCGCTAATGCTT
CAGGCTTTAGCGGCA
Found at i:24048626 original size:40 final size:40
Alignment explanation
Indices: 24048543--24048652 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 40
24048533 TGCTCGGGAA
* * * *
24048543 TTAGCGGCTTTTTTGAAAAAGAGCGGCAAATGCTCTATTT
1 TTAGCGGCTTTTTTGAAAAAGAGCCGCAAATACTCAATCT
* *
24048583 TTAGCGG-TGTTTTTGAGAAAGAGCCGCTAATACTCAATCT
1 TTAGCGGCT-TTTTTGAAAAAGAGCCGCAAATACTCAATCT
* * * * *
24048623 TTAGTGACATTTTTAAAAAAGCGCCGCAAA
1 TTAGCGGCTTTTTTGAAAAAGAGCCGCAAA
24048653 AATAATTTTA
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
39 1 0.02
40 54 0.98
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (40 bp):
TTAGCGGCTTTTTTGAAAAAGAGCCGCAAATACTCAATCT
Found at i:24049475 original size:275 final size:289
Alignment explanation
Indices: 24049123--24049815 Score: 862
Period size: 275 Copynumber: 2.4 Consensus size: 289
24049113 AGACATTAAG
* *
24049123 TTTAAGAG-TTAGGGATTCAGGGGT-GGAGTTAGGGTTTTGGGTTTAAATTAATTAGTTTTTTTA
1 TTTAAG-GTTTAGGGATTCAGGGGTCGG-GTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTTA
*
24049186 ATTTCTATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTT
64 ATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTT
*
24049251 TTGGTTTAGGG-TAT-A-TAA-TTAAGATTTAAAGCTAGTATAGGAGTTACTATTTTAAGG-TT-
129 TTGGTTTAGGGATATGATTAATTTAAGATTTAAAGCCAGTATAGGAGTTACTATTTTAAGGTTTA
* * *
24049310 TAG-G-TGG-TATGG-AT-TTAGGGATTATGGTTTA-AAGGGTTGGGATTTAAGGGTTT-GGGGT
194 TAGAGATGGTTAGGGTATATTAGGGATTATGGTTTATAAAGGTTGGGATTTAA-GGTTTAAGGGT
* *
24049368 TTGGGGTTAGAC-GTAGGGGTTAAGAATATGA
258 TAGGGGTTAGACAGTAAGGGTTAAGAATATGA
* *
24049399 TTT-AGGTTTAGGGATTTAGGGGTCGGGTTAGGGTTTTAGGTTTAGATTAATTTGTTTTTTTAAT
1 TTTAAGGTTTAGGGATTCAGGGGTCGGGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTTAAT
* * * *
24049463 TTATACTTTAAATATTTTATTATATAATTATAAAAGAGATAATAATAAATTTGTTTAGGGTTTTT
66 TTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTT
* * * *
24049528 GGTTTAGGGTATATGATTAATTTAATATTTAAGGCCGGTTTAGGAGTTACTATTTTAAGGTTTAT
131 GGTTTAGGG-ATATGATTAATTTAAGATTTAAAGCCAGTATAGGAGTTACTATTTTAAGGTTTAT
*
24049593 AGAGTATGGATTTAGGGATTATGAATTATGGATTATGGTTTATGGTTTAAAGGTTGGGATTTAAG
195 AGAG-ATGG--TTAGGG--TAT--ATTAGGGATTATGGTTTA-----TAAAGGTTGGGATTTAAG
*
24049658 GTTTAAGGGTTAGGGGTTAGACATTAAGGGTTAAGAATATGA
248 GTTTAAGGGTTAGGGGTTAGACAGTAAGGGTTAAGAATATGA
* * * ** *
24049700 TTTAAGGTTTAAGGATTGATGGGTCAAGTTAAGGTTTTAGGTTTAGATTAATTAGTTTTTTTAAT
1 TTTAAGGTTTAGGGATTCAGGGGTCGGGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTTAAT
* *
24049765 TTATATTTTAAATCTGTTCTTATATAATTGTAAAAGGGATAATAATAAATT
66 TTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATT
24049816 GAATATATTG
Statistics
Matches: 353, Mismatches: 34, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
274 1 0.00
275 121 0.34
276 5 0.01
277 3 0.01
278 1 0.00
279 3 0.01
280 34 0.10
281 2 0.01
282 3 0.01
283 1 0.00
285 3 0.01
288 4 0.01
291 2 0.01
294 16 0.05
299 5 0.01
300 30 0.08
301 20 0.06
302 99 0.28
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (289 bp):
TTTAAGGTTTAGGGATTCAGGGGTCGGGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTTAAT
TTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTT
GGTTTAGGGATATGATTAATTTAAGATTTAAAGCCAGTATAGGAGTTACTATTTTAAGGTTTATA
GAGATGGTTAGGGTATATTAGGGATTATGGTTTATAAAGGTTGGGATTTAAGGTTTAAGGGTTAG
GGGTTAGACAGTAAGGGTTAAGAATATGA
Found at i:24049635 original size:14 final size:14
Alignment explanation
Indices: 24049586--24049637 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
24049576 ACTATTTTAA
* *
24049586 GGTTTATAGAGTAT
1 GGTTTATGGATTAT
*
24049600 GGATTTAGGGATTAT
1 GG-TTTATGGATTAT
**
24049615 GAATTATGGATTAT
1 GGTTTATGGATTAT
24049629 GGTTTATGG
1 GGTTTATGG
24049638 TTTAAAGGTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 19 0.66
15 10 0.34
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:24054390 original size:43 final size:43
Alignment explanation
Indices: 24054288--24054511 Score: 213
Period size: 43 Copynumber: 5.3 Consensus size: 43
24054278 ATATATTTTT
* * * * *
24054288 TAAAAGTCATG-TTTTTAGCGGAGTTTGT-GAAAAAGCGTCGG
1 TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* ** *
24054329 TAAAAGTCGTTCTTTATAGCGGCGTTTGT-GAAAGAAGCGCCGC
1 TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAA-AAGCGCCGC
* *
24054372 TAAAACTCATGATCTATAGCGGCG-TTGTGGCAAAAGCGCCGC
1 TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * * *
24054414 TAAAAGTCGTGATCTATAGCGGCGTTTGTGGGAAAAGTGTCGC
1 TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * ** * *
24054457 TAAAGGTCATGATCTTTAGCGGTATTTATGGGAAAAGCGCCGC
1 TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
*
24054500 TAAAGGTCATGA
1 TAAAAGTCATGA
24054512 CTTTTAGCAG
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
41 9 0.06
42 54 0.35
43 91 0.59
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (43 bp):
TAAAAGTCATGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
Found at i:24054432 original size:85 final size:86
Alignment explanation
Indices: 24054318--24054503 Score: 214
Period size: 85 Copynumber: 2.2 Consensus size: 86
24054308 GAGTTTGTGA
* * ** *
24054318 AAAAGCGTCGGTAAAAGTCGTTCTTTATAGCGGCGTTTGT-GAAAGAAGCGCCGCTAAAACTCAT
1 AAAAGCGCCGCTAAAAGTCGTGATCTATAGCGGCGTTTGTGGAAA-AAGCGCCGCTAAAACTCAT
* *
24054382 GATCTATAGCGG-CGTTGTGGC
65 GATCTATAGCGGTAGTTATGGC
* * * **
24054403 AAAAGCGCCGCTAAAAGTCGTGATCTATAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAAGTCGTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAACTCATG
* * *
24054468 ATCTTTAGCGGTATTTATGGG
66 ATCTATAGCGGTAGTTATGGC
24054489 AAAAGCGCCGCTAAA
1 AAAAGCGCCGCTAAA
24054504 GGTCATGACT
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
85 61 0.73
86 23 0.27
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAAGTCGTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAACTCATG
ATCTATAGCGGTAGTTATGGC
Found at i:24054873 original size:34 final size:35
Alignment explanation
Indices: 24054829--24054895 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
24054819 CTGTAAAATG
*
24054829 TTTTCCGTAAAATGAATT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
* *
24054863 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTT
24054896 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
Found at i:24054882 original size:20 final size:20
Alignment explanation
Indices: 24054845--24054883 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24054835 GTAAAATGAA
**
24054845 TTCTGGAAAATGTTTTACTT
1 TTCTGGAAAATGACTTACTT
*
24054865 TTCTGTAAAATGACTTACT
1 TTCTGGAAAATGACTTACT
24054884 GGAAAATATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTCTGGAAAATGACTTACTT
Found at i:24056270 original size:27 final size:27
Alignment explanation
Indices: 24056240--24056309 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
24056230 AATAATCAAT
*
24056240 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
24056267 TCAATATCTAACCAATTCAAGACATATA
1 TCAATATCCAA-CAATTCAAAACATATA
*
24056295 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
24056310 CTAAAATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:24060583 original size:6 final size:6
Alignment explanation
Indices: 24060572--24060602 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
24060562 AATATTTCCC
*
24060572 ACAGAA ACAGAA ACAGAA ACAAAA ACAGAA A
1 ACAGAA ACAGAA ACAGAA ACAGAA ACAGAA A
24060603 ATACAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.16, G:0.13, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:24064225 original size:30 final size:30
Alignment explanation
Indices: 24064191--24064253 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
24064181 TTTCTTAGGG
*
24064191 TTTTAGGTTTATTTCAATTGTTCTTATTGA
1 TTTTAGATTTATTTCAATTGTTCTTATTGA
*
24064221 TTTTAGATTTATTTCAATTGTTCTTGTTGA
1 TTTTAGATTTATTTCAATTGTTCTTATTGA
24064251 TTT
1 TTT
24064254 CAAGAGATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.62
Consensus pattern (30 bp):
TTTTAGATTTATTTCAATTGTTCTTATTGA
Found at i:24070661 original size:31 final size:31
Alignment explanation
Indices: 24070623--24070686 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
24070613 CCAGTCTTAG
24070623 TAGGAAGACCCTTTTTGGCTACTTCTAGGTC
1 TAGGAAGACCCTTTTTGGCTACTTCTAGGTC
24070654 TAGGAAGACCCTTTTTGGCTACTTCTAGGTC
1 TAGGAAGACCCTTTTTGGCTACTTCTAGGTC
24070685 TA
1 TA
24070687 CCATTAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (31 bp):
TAGGAAGACCCTTTTTGGCTACTTCTAGGTC
Found at i:24070834 original size:32 final size:32
Alignment explanation
Indices: 24070798--24070861 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
24070788 TTAGGAGAAT
24070798 AGTGTAAAAAAGTATTTATTTCTT-ACATTCCC
1 AGTGTAAAAAAGTATTTATTT-TTAACATTCCC
24070830 AGTGTAAAAAAGTATTTATTTTTAACATTCCC
1 AGTGTAAAAAAGTATTTATTTTTAACATTCCC
24070862 GAATCAAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.06
32 29 0.94
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (32 bp):
AGTGTAAAAAAGTATTTATTTTTAACATTCCC
Found at i:24076142 original size:42 final size:42
Alignment explanation
Indices: 24076096--24076314 Score: 199
Period size: 42 Copynumber: 5.2 Consensus size: 42
24076086 AGTACACAAT
* *
24076096 TGCATCATCGGATGAACCAAAGCAAATCTACTGGCATGTTAG
1 TGCATCATCGGATGAACCAAAGCAAATATACTGGCATGTAAG
* * *** *
24076138 TGCATAATTGGATGAATTGAAGCAAATATATTGGCATGTAAG
1 TGCATCATCGGATGAACCAAAGCAAATATACTGGCATGTAAG
* * * * * *
24076180 TTCATCATCAGATGAACCAGAGCAAATATACTAGCACGTAAA
1 TGCATCATCGGATGAACCAAAGCAAATATACTGGCATGTAAG
* * * **
24076222 TGCATCATCGGATAAACCAAATCAAACATACTGGCACATAAG
1 TGCATCATCGGATGAACCAAAGCAAATATACTGGCATGTAAG
* * *
24076264 TGCATCATCGAAT-AAGCCAAAGTAAATATACTAGCATAAGT-AG
1 TGCATCATCGGATGAA-CCAAAGCAAATATACTGGCAT--GTAAG
24076307 TGCATCAT
1 TGCATCAT
24076315 TGGCTAAACC
Statistics
Matches: 138, Mismatches: 36, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.01
42 125 0.91
43 10 0.07
44 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (42 bp):
TGCATCATCGGATGAACCAAAGCAAATATACTGGCATGTAAG
Found at i:24078898 original size:43 final size:43
Alignment explanation
Indices: 24078759--24078915 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
24078749 GGCTCGTACA
** *
24078759 ATGCCAACGTCCCAGATGTGGTCTTACATGTA-ATCAC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTATA-CACAAT-TCG
* * * * ** *
24078802 ATGTC-ACTGTCCCAGACAGGGTTTTATACAAAT-CA-AATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTATACACAATTCG
*
24078843 ATGCCAATGTCCCAGACATGGTCTTACACGTATACACAATTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTATACACAATTCG
*
24078886 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
24078916 AAAATACATA
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 26 0.30
42 9 0.10
43 53 0.60
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTATACACAATTCG
Found at i:24082178 original size:55 final size:55
Alignment explanation
Indices: 24082094--24082203 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
24082084 TCTACAATGG
*
24082094 TTTAAATAGGAGTGAGTAAGCTTAACAAGTTCAGTGAATGTTTAGAAAAACTATC
1 TTTAAATAGGAGTGAGTAAGCTTAACAAGTTCAATGAATGTTTAGAAAAACTATC
*
24082149 TTTAAATAGGAGTGGGTAAGCTTAACAAGTTCAATGAATGTTTAGAAAAACTATC
1 TTTAAATAGGAGTGAGTAAGCTTAACAAGTTCAATGAATGTTTAGAAAAACTATC
24082204 ATGCAAACGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (55 bp):
TTTAAATAGGAGTGAGTAAGCTTAACAAGTTCAATGAATGTTTAGAAAAACTATC
Found at i:24085309 original size:71 final size:71
Alignment explanation
Indices: 24085201--24085342 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
24085191 TTTTTTAAAG
24085201 AAAAATTATATATTTAATTTATTATTATTTCAAGAAAATGTAAAAGAAATTTAAAAAATAATGAA
1 AAAAATTATATATTTAATTTATTATTATTTCAAGAAAATGTAAAAGAAATTTAAAAAATAATGAA
24085266 GAACTT
66 GAACTT
24085272 AAAAATTATATATTTAATTTA-TATTTATTTCAAGAAAATGTAAAAGAAATTTAAAAAATAATGA
1 AAAAATTATATATTTAATTTATTA-TTATTTCAAGAAAATGTAAAAGAAATTTAAAAAATAATGA
24085336 AGAACTT
65 AGAACTT
24085343 TGAAGTTAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 2 0.03
71 68 0.97
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.37
Consensus pattern (71 bp):
AAAAATTATATATTTAATTTATTATTATTTCAAGAAAATGTAAAAGAAATTTAAAAAATAATGAA
GAACTT
Found at i:24097980 original size:25 final size:25
Alignment explanation
Indices: 24097943--24098006 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
24097933 TGTCTGTACA
* *
24097943 TTTTAGATCAAAAAGTAAATTAATC
1 TTTTATATTAAAAAGTAAATTAATC
* *
24097968 TTTTATATTAAAAATTTAATTAATC
1 TTTTATATTAAAAAGTAAATTAATC
24097993 TTTTATATTAAAAA
1 TTTTATATTAAAAA
24098007 TTTTATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (25 bp):
TTTTATATTAAAAAGTAAATTAATC
Found at i:24098007 original size:25 final size:25
Alignment explanation
Indices: 24097960--24098009 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24097950 TCAAAAAGTA
24097960 AATTAATCTTTTATATTAAAAATTT
1 AATTAATCTTTTATATTAAAAATTT
24097985 AATTAATCTTTTATATTAAAAATTT
1 AATTAATCTTTTATATTAAAAATTT
24098010 TATTTATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (25 bp):
AATTAATCTTTTATATTAAAAATTT
Found at i:24109412 original size:12 final size:12
Alignment explanation
Indices: 24109395--24109420 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24109385 ATTCGCATAA
24109395 AATTTACGAACT
1 AATTTACGAACT
24109407 AATTTACGAACT
1 AATTTACGAACT
24109419 AA
1 AA
24109421 CTCCTCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AATTTACGAACT
Found at i:24113391 original size:31 final size:31
Alignment explanation
Indices: 24113333--24113392 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
24113323 GTCTTTTGAA
* *
24113333 AATATGTACAAAAAGAGACATCTAATTTTTT
1 AATATGTACAAAAAGAGACACCAAATTTTTT
*
24113364 AATATTTACAAAAAGAGTA-ACCAAATTTT
1 AATATGTACAAAAAGAG-ACACCAAATTTT
24113393 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.33
Consensus pattern (31 bp):
AATATGTACAAAAAGAGACACCAAATTTTTT
Found at i:24124066 original size:185 final size:184
Alignment explanation
Indices: 24123765--24124118 Score: 514
Period size: 185 Copynumber: 1.9 Consensus size: 184
24123755 ACCGACATTG
* * *
24123765 GTGACTTTTCGACTTACTGCTCCCTTTCAAATGATCATCTCCTTCCCCTTTTCCTTTTGATCAGA
1 GTGACTTTCCGACTTACTGCTCCCTTCCAAATGATCATCTCCTTCCCCTCTTCCTTTTGATCAGA
* * * * *
24123830 CTAGATTTCCAAGGAGCTCCTCCAAACCCATCGAATTCCTAACCTGAAACCTGGGATTCAACATT
66 CTAGATTTCCAAGGACCTCCTCCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAACATC
24123895 TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
131 TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
* * * * *
24123949 GTGACTTTCCGGCTTACTGCTGCCTTCCAAAATGATCCTTTTCTTCCCCTCTT-CTCTTTGATCA
1 GTGACTTTCCGACTTACTGCTCCCTTCC-AAATGATCATCTCCTTCCCCTCTTCCT-TTTGATCA
* *
24124013 GACTAGATTTTCAAGGACCT-CTACCAAACCCATCGAATTTCTAACCCGAAACCTAGGACTCAAC
64 GACTAGATTTCCAAGGACCTCCT-CCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAAC
* *
24124077 ATCTTCTTCCACCATAAGGGGTTTGTCAAAGAAGGCATCTTT
128 ATCTTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTT
24124119 CCAACAAAGT
Statistics
Matches: 150, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
184 28 0.19
185 122 0.81
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (184 bp):
GTGACTTTCCGACTTACTGCTCCCTTCCAAATGATCATCTCCTTCCCCTCTTCCTTTTGATCAGA
CTAGATTTCCAAGGACCTCCTCCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAACATC
TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
Found at i:24126488 original size:125 final size:126
Alignment explanation
Indices: 24126259--24126634 Score: 539
Period size: 125 Copynumber: 3.0 Consensus size: 126
24126249 GGTTTTTAGG
** *
24126259 TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCT-CTTTTACCAGG
1 TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCTACCAGG
24126323 ATGCTTTATGAGAAGAATTTGTT-AAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGA
66 ATGCTTTATGAGAAGAATTT-TTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGA
* * * * *
24126384 TCCT-GAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAAG
1 TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCTACCAGG
* ** * *
24126448 ATGCTATT-TGAGAAGAATTTTTGAAATCGCGTCCTTGTGGACGCGCTTTTGCTACAGTTGA
66 ATGCT-TTATGAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGA
24126509 TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT--AAAATCGCTTCTACCAG
1 TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAT-GCTTCTACCAG
* * *
24126572 GATGTTTTATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTATAGTAGA
65 GATGCTTTATGAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGA
24126634 T
1 T
24126635 GTTTGGGCTG
Statistics
Matches: 219, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
124 53 0.24
125 125 0.57
126 41 0.19
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (126 bp):
TCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCTACCAGG
ATGCTTTATGAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGA
Found at i:24129858 original size:70 final size:70
Alignment explanation
Indices: 24129784--24129939 Score: 267
Period size: 70 Copynumber: 2.2 Consensus size: 70
24129774 TAATCTCATG
*
24129784 TTATTACATCAAATAATATTAAAATAACTCAAAAAAATTTATATTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTATATTTTATTACATCAAATAAACTT
24129849 CTATT
66 CTATT
* *
24129854 TTATTACATCAAATAATATCAAAATAACTCAAAAGAATTTTTATTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTATATTTTATTACATCAAATAAACTT
*
24129919 TTATT
66 CTATT
*
24129924 TTATTATATCAAATAA
1 TTATTACATCAAATAA
24129940 ACTTCTATTT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 81 1.00
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.41
Consensus pattern (70 bp):
TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTATATTTTATTACATCAAATAAACTT
CTATT
Found at i:24129886 original size:45 final size:45
Alignment explanation
Indices: 24129837--24130114 Score: 267
Period size: 45 Copynumber: 6.0 Consensus size: 45
24129827 TTTTATTACA
24129837 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* * *** *
24129882 TCAAA-AGAATTTTTATTTTATTACATCAAATAAACTTTTATTTTATTATA-
1 TCAAATA-AACTTCTATTTTATTACATCAAAT-AA----TATCAAAATA-AC
24129932 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* * *** *
24129977 TCAAA-AGAATTTTTATTTTATTACATCAAATAAACTTTTATTTTATTATA-
1 TCAAATA-AACTTCTATTTTATTACATCAAAT-AA----TATCAAAATA-AC
24130027 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* * *
24130072 TCAAAAAAATTTCTATTTTATTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATA
24130115 TTCAAAATAT
Statistics
Matches: 188, Mismatches: 27, Indels: 36
0.75 0.11 0.14
Matches are distributed among these distances:
44 4 0.02
45 106 0.56
46 4 0.02
49 4 0.02
50 66 0.35
51 4 0.02
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
Found at i:24129924 original size:95 final size:95
Alignment explanation
Indices: 24129812--24130104 Score: 525
Period size: 95 Copynumber: 3.1 Consensus size: 95
24129802 TTAAAATAAC
* *
24129812 TCAAA-AAAATTTATATTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAA
1 TCAAATAAACTTT-TATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAA
24129876 AATAACTCAAAAGAATTTTTATTTTATTACA
65 AATAACTCAAAAGAATTTTTATTTTATTACA
24129907 TCAAATAAACTTTTATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAA
1 TCAAATAAACTTTTATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAA
24129972 ATAACTCAAAAGAATTTTTATTTTATTACA
66 ATAACTCAAAAGAATTTTTATTTTATTACA
24130002 TCAAATAAACTTTTATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAA
1 TCAAATAAACTTTTATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAA
* *
24130067 ATAACTCAAAAAAATTTCTATTTTATTACA
66 ATAACTCAAAAGAATTTTTATTTTATTACA
*
24130097 TAAAATAA
1 TCAAATAA
24130105 TATCAAAATA
Statistics
Matches: 192, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
95 186 0.97
96 6 0.03
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.42
Consensus pattern (95 bp):
TCAAATAAACTTTTATTTTATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAA
ATAACTCAAAAGAATTTTTATTTTATTACA
Found at i:24130057 original size:25 final size:25
Alignment explanation
Indices: 24129825--24130059 Score: 210
Period size: 25 Copynumber: 9.8 Consensus size: 25
24129815 AAAAAATTTA
24129825 TATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
24129850 TATTTTATTACATCAAAT-AA-TATC
1 TATTTTATTACATCAAATAAACT-TC
** * * *
24129874 -A--AAATAAC-TCAAA-AGAATTTT
1 TATTTTATTACATCAAATA-AACTTC
*
24129895 TATTTTATTACATCAAATAAACTTT
1 TATTTTATTACATCAAATAAACTTC
*
24129920 TATTTTATTATATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
24129945 TATTTTATTACATCAAAT-AA-TATC
1 TATTTTATTACATCAAATAAACT-TC
** * * *
24129969 -A--AAATAAC-TCAAA-AGAATTTT
1 TATTTTATTACATCAAATA-AACTTC
*
24129990 TATTTTATTACATCAAATAAACTTT
1 TATTTTATTACATCAAATAAACTTC
*
24130015 TATTTTATTATATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
24130040 TATTTTATTACATCAAATAA
1 TATTTTATTACATCAAATAA
24130060 TATCAAAATA
Statistics
Matches: 170, Mismatches: 22, Indels: 36
0.75 0.10 0.16
Matches are distributed among these distances:
20 10 0.06
21 14 0.08
22 4 0.02
23 4 0.02
24 16 0.09
25 120 0.71
26 2 0.01
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (25 bp):
TATTTTATTACATCAAATAAACTTC
Found at i:24130571 original size:18 final size:18
Alignment explanation
Indices: 24130535--24130572 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
24130525 CTCTGAAAAT
*
24130535 GATACATATAAGGGTTAG
1 GATACATATAAGGGCTAG
*
24130553 GATACATATAATGGCTAG
1 GATACATATAAGGGCTAG
24130571 GA
1 GA
24130573 AACGCACCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.26
Consensus pattern (18 bp):
GATACATATAAGGGCTAG
Found at i:24132490 original size:11 final size:11
Alignment explanation
Indices: 24132476--24132552 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
24132466 TTAAATATGG
24132476 ATTTGAGAGAA
1 ATTTGAGAGAA
*
24132487 ATTTGTA-AGGA
1 ATTTG-AGAGAA
24132498 ATTTGAGAGCAA
1 ATTTGAGAG-AA
*
24132510 A-TTGAAAAGAA
1 ATTTG-AGAGAA
24132521 ATTT-AGAGGAA
1 ATTTGAGA-GAA
24132532 A-TTGAGAGGAA
1 ATTTGAGA-GAA
24132543 ATTTGAGAGA
1 ATTTGAGAGA
24132553 GGATTAGTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
10 5 0.09
11 35 0.65
12 14 0.26
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:24132533 original size:22 final size:23
Alignment explanation
Indices: 24132476--24132551 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
24132466 TTAAATATGG
* *
24132476 ATTTGAGAG-AAATTTG-TAAGGA
1 ATTTGAGAGCAAA-TTGAAAAGAA
24132498 ATTTGAGAGCAAATTGAAAAGAA
1 ATTTGAGAGCAAATTGAAAAGAA
* * *
24132521 ATTT-AGAGGAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAAAAGAA
24132543 ATTTGAGAG
1 ATTTGAGAG
24132552 AGGATTAGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 31 0.67
23 15 0.33
ACGTcount: A:0.45, C:0.01, G:0.28, T:0.26
Consensus pattern (23 bp):
ATTTGAGAGCAAATTGAAAAGAA
Found at i:24136712 original size:26 final size:25
Alignment explanation
Indices: 24136641--24136713 Score: 67
Period size: 30 Copynumber: 2.7 Consensus size: 25
24136631 AAAAAAAGGT
*
24136641 ATATATAAAT-TTTAGTAAATAAAA
1 ATATATAAATATTTATTAAATAAAA
*
24136665 ATATATAAAATTATTAGATATTAAATTAAA
1 ATATAT-AAA-TATT---TATTAAATAAAA
24136695 ATAATATAAATATTTATTA
1 AT-ATATAAATATTTATTA
24136714 CAAAACAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
24 6 0.15
25 3 0.08
26 6 0.15
27 2 0.05
29 4 0.10
30 15 0.38
31 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (25 bp):
ATATATAAATATTTATTAAATAAAA
Found at i:24137475 original size:3 final size:3
Alignment explanation
Indices: 24137467--24137499 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
24137457 TCATACACAA
*
24137467 AAG AAG AAG AAG AAG AAG CAG AAG AAG AA- AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
24137500 CCTAACTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.67, C:0.03, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24139912 original size:18 final size:17
Alignment explanation
Indices: 24139867--24139914 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
24139857 TTTTCCCAAA
24139867 TTAAAATAAATAACAACT
1 TTAAAA-AAATAACAACT
* * *
24139885 ATAAATAAATAACTGACT
1 TTAAAAAAATAAC-AACT
24139903 TTAAAAAAATAA
1 TTAAAAAAATAA
24139915 AAACCCACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (17 bp):
TTAAAAAAATAACAACT
Found at i:24143031 original size:43 final size:43
Alignment explanation
Indices: 24142983--24143065 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
24142973 CCATATTTCA
**
24142983 TTTCTCATCTCATAATCATTGCTCATCTTTGTCATTTCAACAT
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAACAT
* *
24143026 TTTCTCATCTCATATTCATTTCTCATCTTTACCATTTCAA
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAA
24143066 TATCAATCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.02, T:0.48
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAACAT
Found at i:24146508 original size:11 final size:11
Alignment explanation
Indices: 24146494--24146520 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24146484 AAAAATCAAT
24146494 ACAAAAGTTTC
1 ACAAAAGTTTC
24146505 ACAAAAGTTTC
1 ACAAAAGTTTC
24146516 ACAAA
1 ACAAA
24146521 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:24148785 original size:15 final size:15
Alignment explanation
Indices: 24148765--24148795 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24148755 ATATTATGTA
*
24148765 TAATTGACGTAAAAT
1 TAATTGACCTAAAAT
24148780 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
24148795 T
1 T
24148796 TGAAGGTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (15 bp):
TAATTGACCTAAAAT
Found at i:24156899 original size:14 final size:14
Alignment explanation
Indices: 24156880--24156911 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
24156870 GGAATTGATG
24156880 GAAAATATTGTAGA
1 GAAAATATTGTAGA
24156894 GAAAATATTGTAGA
1 GAAAATATTGTAGA
24156908 GAAA
1 GAAA
24156912 GGAAAGGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (14 bp):
GAAAATATTGTAGA
Found at i:24157645 original size:42 final size:42
Alignment explanation
Indices: 24157586--24157672 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
24157576 AGGATGTGGA
24157586 ATGGAGAGGAGGAGGAGGAAAACATATGATTATTCAACTAGC
1 ATGGAGAGGAGGAGGAGGAAAACATATGATTATTCAACTAGC
24157628 ATGGAGAGGAGGAGGAGGAAAACATATGATTATTCAACTAGC
1 ATGGAGAGGAGGAGGAGGAAAACATATGATTATTCAACTAGC
24157670 ATG
1 ATG
24157673 AGTTTTCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.40, C:0.09, G:0.31, T:0.20
Consensus pattern (42 bp):
ATGGAGAGGAGGAGGAGGAAAACATATGATTATTCAACTAGC
Found at i:24162385 original size:21 final size:21
Alignment explanation
Indices: 24162360--24162401 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24162350 TTTGCCTAGT
24162360 ATGTGAATTGTAATT-AATTGA
1 ATGTGAATTG-AATTAAATTGA
24162381 ATGTGAATTGAATTAAATTGA
1 ATGTGAATTGAATTAAATTGA
24162402 GCTAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (21 bp):
ATGTGAATTGAATTAAATTGA
Found at i:24162851 original size:26 final size:26
Alignment explanation
Indices: 24162821--24162895 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
24162811 ACAACTCTTA
*
24162821 TGAGCGTCCTG-TTATATGGCTCTTCG
1 TGAGCTTCCTGATTA-ATGGCTCTTCG
* * *
24162847 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCTGATTAATGGCTCTTCG
24162873 TGAGCTTCCTGATTAATGGCTCT
1 TGAGCTTCCTGATTAATGGCTCT
24162896 CTGGAGCTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.37
Consensus pattern (26 bp):
TGAGCTTCCTGATTAATGGCTCTTCG
Found at i:24166255 original size:16 final size:16
Alignment explanation
Indices: 24166234--24166264 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24166224 AGATAACAAC
*
24166234 ATTGTCTAAGTGCATA
1 ATTGTCCAAGTGCATA
24166250 ATTGTCCAAGTGCAT
1 ATTGTCCAAGTGCAT
24166265 TACTCGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (16 bp):
ATTGTCCAAGTGCATA
Found at i:24170490 original size:45 final size:45
Alignment explanation
Indices: 24170438--24170523 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
24170428 AAAAATGCAT
* * *
24170438 TGGTTTTATCCATGTTTTGGAGAGTGTTTTCCTTTGGGAATTCAG
1 TGGTTTTACCCATGTTTTGGAGAATATTTTCCTTTGGGAATTCAG
24170483 TGGTTTTACCCATGTTTTGGAGAATATTTTCCTTTGGGAAT
1 TGGTTTTACCCATGTTTTGGAGAATATTTTCCTTTGGGAAT
24170524 ACATTTTCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.47
Consensus pattern (45 bp):
TGGTTTTACCCATGTTTTGGAGAATATTTTCCTTTGGGAATTCAG
Found at i:24172318 original size:22 final size:21
Alignment explanation
Indices: 24172276--24172321 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
24172266 GGGATCAACA
24172276 CAAATATAATCACATGCATAT
1 CAAATATAATCACATGCATAT
*
24172297 CAAATTATCAATCTCAT-CATAT
1 CAAA-TAT-AATCACATGCATAT
24172319 CAA
1 CAA
24172322 TCATCATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 11 0.50
23 7 0.32
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (21 bp):
CAAATATAATCACATGCATAT
Found at i:24172527 original size:22 final size:22
Alignment explanation
Indices: 24172502--24172561 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
24172492 TGGTTTGCAA
*
24172502 ATAAATTTCCACTGATTT-TCAG
1 ATAAATTACCACTGATTTGT-AG
*
24172524 ATAAACTACCACTGATTTGTAG
1 ATAAATTACCACTGATTTGTAG
*
24172546 ATAAATTGCCACTGAT
1 ATAAATTACCACTGAT
24172562 AACACTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (22 bp):
ATAAATTACCACTGATTTGTAG
Found at i:24183574 original size:7 final size:7
Alignment explanation
Indices: 24183558--24183615 Score: 62
Period size: 7 Copynumber: 8.0 Consensus size: 7
24183548 AAAACGCGTA
24183558 GGGTTTT
1 GGGTTTT
*
24183565 GGGTTAT
1 GGGTTTT
*
24183572 GGGTTTA
1 GGGTTTT
24183579 GGGTTTT
1 GGGTTTT
24183586 GGGTTTT
1 GGGTTTT
24183593 GGTGTTTTT
1 GG-G-TTTT
* *
24183602 AGGTTTA
1 GGGTTTT
24183609 GGGTTTT
1 GGGTTTT
24183616 AGAGAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
7 34 0.83
8 2 0.05
9 5 0.12
ACGTcount: A:0.07, C:0.00, G:0.40, T:0.53
Consensus pattern (7 bp):
GGGTTTT
Found at i:24183582 original size:21 final size:22
Alignment explanation
Indices: 24183556--24183599 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
24183546 GCAAAACGCG
24183556 TAGGGTTTTGGGTTATGG-GTT
1 TAGGGTTTTGGGTTATGGTGTT
*
24183577 TAGGGTTTTGGGTTTTGGTGTT
1 TAGGGTTTTGGGTTATGGTGTT
24183599 T
1 T
24183600 TTAGGTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.07, C:0.00, G:0.41, T:0.52
Consensus pattern (22 bp):
TAGGGTTTTGGGTTATGGTGTT
Found at i:24183814 original size:96 final size:96
Alignment explanation
Indices: 24183714--24183958 Score: 307
Period size: 97 Copynumber: 2.5 Consensus size: 96
24183704 TGTTTATTGT
* * *
24183714 TTTTTAAGAAAAGATCAATTAAATTAAGGTTTAAGGTTAGTTGAGTAATTTAA-T-TAAATTTTT
1 TTTTTAAGAAAA-ATCAAATAAATTAAGGTTTAAGGTTACTTGAGTAAATTAATTATAAATTTTT
24183777 AAAAAAAATTAGATTAGGGTTTAGAGTTAAGGG
65 -AAAAAAATTAGATTAGGGTTTAGAGTTAAGGG
* *
24183810 TTTTTATGAAAAAATCAAATAAATTAAGGTTCAAGGTTACTTGAGTAAATTAATTATAAATTTTT
1 TTTTTAAG-AAAAATCAAATAAATTAAGGTTTAAGGTTACTTGAGTAAATTAATTATAAATTTTT
* * *
24183875 TAAAAAATTAGATTAGGGTTTAGGGTTTAGGG
65 AAAAAAATTAGATTAGGGTTTAGAGTTAAGGG
* * * * *
24183907 -TTTTAAGTAAAAACTTAAATAAATTAGGGTTTAGGGTTACTTAATTAAATTA
1 TTTTTAAG-AAAAA-TCAAATAAATTAAGGTTTAAGGTTACTTGAGTAAATTA
24183959 TTTGTTAATT
Statistics
Matches: 129, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
96 54 0.42
97 66 0.51
98 9 0.07
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (96 bp):
TTTTTAAGAAAAATCAAATAAATTAAGGTTTAAGGTTACTTGAGTAAATTAATTATAAATTTTTA
AAAAAATTAGATTAGGGTTTAGAGTTAAGGG
Found at i:24184199 original size:126 final size:123
Alignment explanation
Indices: 24183970--24184309 Score: 451
Period size: 126 Copynumber: 2.8 Consensus size: 123
24183960 TTGTTAATTT
* * *
24183970 AAAGAAGCTCCCACGTGGATGCGCTATTGCTACAGTAGCTCCTG-AAAAATAATTTCGAGTAGAC
1 AAAGAAGCT-TCACGTGGA--CGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGAC
* * *
24184034 GTTTCTAAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCA-ATAATACTG
63 GTTTTTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGA-AATACTA
24184095 AAAGAAGCTTCTACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGAC
1 AAAGAAGCTTC-ACGTGG--ACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGAC
* * *
24184160 GTTTTTGAGCAAATAGTGTCAAAAACGCTTTAAGTAGGATGCTTTGTCAGCAGAAGTACTA
63 GTTTTTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAATACTA
* **
24184221 AAAGAAGC-TCAC---G-CGCTTTTGGTACAGTAGCTCCTGAAAAAATAATTTTAAGTTGACGTT
1 AAAGAAGCTTCACGTGGACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGACGTT
*
24184281 TTTTAGCAAATAGTGTCAAAAACGCTTTA
66 TTTAAGCAAATAGTGTCAAAAACGCTTTA
24184310 GAGAGGCTAA
Statistics
Matches: 197, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
118 72 0.37
121 1 0.01
124 3 0.02
125 39 0.20
126 80 0.41
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (123 bp):
AAAGAAGCTTCACGTGGACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGACGTT
TTTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAATACTA
Found at i:24189012 original size:11 final size:10
Alignment explanation
Indices: 24188998--24189065 Score: 66
Period size: 11 Copynumber: 6.3 Consensus size: 10
24188988 TTTTAAATAG
24188998 GAATTTGAGA
1 GAATTTGAGA
24189008 TGAATTTGAGA
1 -GAATTTGAGA
24189019 GGAAATTTG-GA
1 -G-AATTTGAGA
24189030 GGAATTTGAGA
1 -GAATTTGAGA
24189041 GAATATTAGAGA
1 GAAT-TT-GAGA
*
24189053 GAAATTGAGA
1 GAATTTGAGA
24189063 GAA
1 GAA
24189066 AGGATTTAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.33
11 21 0.41
12 13 0.25
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (10 bp):
GAATTTGAGA
Found at i:24189033 original size:33 final size:33
Alignment explanation
Indices: 24188996--24189058 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
24188986 TTTTTTAAAT
24188996 AGGAATTTGAGATGAAT-TT-GAGAGGAAATTTGG
1 AGGAATTTGAGA-GAATATTAGAGA-GAAATTTGG
24189029 AGGAATTTGAGAGAATATTAGAGAGAAATT
1 AGGAATTTGAGAGAATATTAGAGAGAAATT
24189059 GAGAGAAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 4 0.14
33 20 0.71
34 4 0.14
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.29
Consensus pattern (33 bp):
AGGAATTTGAGAGAATATTAGAGAGAAATTTGG
Found at i:24192069 original size:40 final size:40
Alignment explanation
Indices: 24192014--24192096 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
24192004 TACTGGGCCA
24192014 CACATCAGAAAGGTATGCATAAAATTCTCACGAGCCTTTC
1 CACATCAGAAAGGTATGCATAAAATTCTCACGAGCCTTTC
* * *
24192054 CACATCAGAAGGGTATGCATAAAATTCTCAGGAGCTTTTC
1 CACATCAGAAAGGTATGCATAAAATTCTCACGAGCCTTTC
24192094 CAC
1 CAC
24192097 GGCTAGGACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (40 bp):
CACATCAGAAAGGTATGCATAAAATTCTCACGAGCCTTTC
Found at i:24193006 original size:992 final size:992
Alignment explanation
Indices: 24191062--24193048 Score: 3359
Period size: 992 Copynumber: 2.0 Consensus size: 992
24191052 TACAAGGCCA
* * *
24191062 CACATTAGAAGGGTAAGCATAAAATTCTTCGGAGCCTTTCTACAGCTAGGACAAATGGGCGATGA
1 CACATCAGAAGGGTAAGCATAAAATTCTTCGGAGCCTTTCCACAGCTAGGACAAATGGGAGATGA
* *
24191127 ATTTAATCTTCTGTTGTAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGG
66 ATTTAATCTTCTATTGTAGAGATTAGCTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGG
* *
24191192 CGATTCCAATTTTTGGAGGGAGATTTAGCTCTCAAATCTACTGTAAAATCTTTTATGATTGGTAC
131 CGATTCCAATTTTTGGAGGGAGATTTAGCTCCCAAATCTACTGTAAAATCTTGTATGATTGGTAC
* * * *
24191257 TTATAGTGTCGTTGATGTTCGATTCGACAAGACAGCAGTAACCACTGCATACCGTATACATACTA
196 TTATAGTGTCATTGATATTCGATTCGACAAGACAGCAGTAACCACTGCATACCGTATACAGACCA
* * *
24191322 GAGTTATCTGTACAGCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATACAACTGAT
261 GAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATACAACAGAT
* *
24191387 TGCATGAGCTTCCATCCAGGTAAGAAGACTCTTAAAAAGTTCCACTGTCCAAGTCTTTGCTGATT
326 TGCATGAGCTTCCATCCAGGTAAAAAGACTATTAAAAAGTTCCACTGTCCAAGTCTTTGCTGATT
* *
24191452 GATCAATAAGGTCTGATATTTTTTCAATACCATTTTTTGCGGTAGTAGCTTAAATTCCCCCTCCC
391 GATCAATAAGGTCTGATACTTTTTCAATACCATTGTTTGCGGTAGTAGCTTAAATTCCCCCTCCC
* * *
24191517 CCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCAGTAAAGGGATCGG
456 CCCTATTTCACGTGAAAGGTTCAAGGCCTAGAGACAAGCTATGGCTTCTGCAGTAAAGGAATCAG
* * *
24191582 AGACGAATTTGTTGAGTACTGTTCTGCTGCCCATAACCGAGCCTCTATTATTCCTAATGACAAAA
521 AGACGAATTTGTGGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTACTATTCCTAATGACAAAA
* *
24191647 TGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATCGAAGTTCACCTTAACAAAAGGTTCT
586 TGGAATAGGAGTGGTGGAGGGTTGCTTGAAACGCAGCATCGAAGTTCACCTTAACAAAAGGTTCT
*
24191712 TGAGGGGGCTTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCAACTCCCT
651 TGAGGGGGCTTCCATATTAGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCAACTCCCT
24191777 CATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTTCCTTCCA
716 CATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTTCCTTCCA
* * **
24191842 TTATGCGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCACCAAAATCA
781 TTATGCACTTGTTTCAAGCTTGCCAGAATGCCCAAGCCATGACTGCAGCAATCTCACCAAAATCA
*
24191907 TGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAAAGTTGAC
846 TGCCCTTGTTTCGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAAAGTTGAC
* * *
24191972 CAGTCAACACCGATTGATCGCCAAACTTTTTTTACTGGGCCACACATCAGAAAGGTATGCATAAA
911 CAGTCAACACCAATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAAGGTATGCATAAA
24192037 ATTCTCACGAGCCTTTC
976 ATTCTCACGAGCCTTTC
* * *
24192054 CACATCAGAAGGGTATGCATAAAATTC-TCAGGAGCTTTTCCACGGCTAGGACAAATGGGAGATG
1 CACATCAGAAGGGTAAGCATAAAATTCTTC-GGAGCCTTTCCACAGCTAGGACAAATGGGAGATG
*
24192118 AATTTATTCTTCTATTGTAGAGATTAGCTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATG
65 AATTTAATCTTCTATTGTAGAGATTAGCTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATG
** * *
24192183 GCGATTCTGATTTTTGG-GTGAGATTTAGCTCCCAAATCTGCTGTAAAATCTTGTATGATTGGTA
130 GCGATTCCAATTTTTGGAGGGAGATTTAGCTCCCAAATCTACTGTAAAATCTTGTATGATTGGTA
* * * *
24192247 CTTATAGTGTCATTGATATTCGATTCGATAAGATAGCGGTAACTACTGCATACCGTATACAGACC
195 CTTATAGTGTCATTGATATTCGATTCGACAAGACAGCAGTAACCACTGCATACCGTATACAGACC
*
24192312 AGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTCAATTGAAAGAGGAATACAACAGA
260 AGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATACAACAGA
* * *
24192377 TTGCATGAGCTTCCATCCGGGTAAAAAGACTATTAATAAGTTCCACTTTCCAAGTCTTTGCTGAT
325 TTGCATGAGCTTCCATCCAGGTAAAAAGACTATTAAAAAGTTCCACTGTCCAAGTCTTTGCTGAT
* *
24192442 TGATCAATAAGGTCTTATACTTTTTCAATACCATTGTTTGCGGTAGTAGCTTGAATTCCCCCCTC
390 TGATCAATAAGGTCTGATACTTTTTCAATACCATTGTTTGCGGTAGTAGCTTAAATT-CCCCCTC
**
24192507 CCCCC-ATTTCACGTGAAAGGTTCAAGGCCTAGAGACAAGCTATGGCTTCTGGTGTAAAGGAATC
454 CCCCCTATTTCACGTGAAAGGTTCAAGGCCTAGAGACAAGCTATGGCTTCTGCAGTAAAGGAATC
24192571 AGAGACGAATTTGTGGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTACTATTCCTAATGACAA
519 AGAGACGAATTTGTGGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTACTATTCCTAATGACAA
24192636 AACTGGAATAGGAGTGGTGGAGGGTTGCTTGAAACGCAGCATCGAAGTTCACCTTAACAAAAGGT
584 AA-TGGAATAGGAGTGGTGGAGGGTTGCTTGAAACGCAGCATCGAAGTTCACCTTAACAAAAGGT
* *
24192701 TCTTGAGGGGGCTTCCATATTAGAGTCATTGTTTTCACCTGGGTAGGTATTTTATTTCTTAACTC
648 TCTTGAGGGGGCTTCCATATTAGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCAACTC
24192766 CCTCATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTTCCTT
713 CCTCATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTTCCTT
*
24192831 CCATTATGCACTTGTTTCAGGCTTGCCAGAATGCCCAAGCCATGACTGCAGCAATCTCACCAAAA
778 CCATTATGCACTTGTTTCAAGCTTGCCAGAATGCCCAAGCCATGACTGCAGCAATCTCACCAAAA
24192896 TCATGCCCTTGTTTCGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAAAGTT
843 TCATGCCCTTGTTTCGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAAAGTT
* * *
24192961 GACCAGTCAACATCAATTGATCGCCAAACATTTTTTGCAGGGCCACACATCAGAAGGGTATGCAT
908 GACCAGTCAACACCAATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAAGGTATGCAT
* *
24193026 AAAATTCTCAGGAGCTTTTC
973 AAAATTCTCACGAGCCTTTC
24193046 CAC
1 CAC
24193049 GGCTAGGACA
Statistics
Matches: 929, Mismatches: 63, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
991 394 0.42
992 535 0.58
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (992 bp):
CACATCAGAAGGGTAAGCATAAAATTCTTCGGAGCCTTTCCACAGCTAGGACAAATGGGAGATGA
ATTTAATCTTCTATTGTAGAGATTAGCTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGG
CGATTCCAATTTTTGGAGGGAGATTTAGCTCCCAAATCTACTGTAAAATCTTGTATGATTGGTAC
TTATAGTGTCATTGATATTCGATTCGACAAGACAGCAGTAACCACTGCATACCGTATACAGACCA
GAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATACAACAGAT
TGCATGAGCTTCCATCCAGGTAAAAAGACTATTAAAAAGTTCCACTGTCCAAGTCTTTGCTGATT
GATCAATAAGGTCTGATACTTTTTCAATACCATTGTTTGCGGTAGTAGCTTAAATTCCCCCTCCC
CCCTATTTCACGTGAAAGGTTCAAGGCCTAGAGACAAGCTATGGCTTCTGCAGTAAAGGAATCAG
AGACGAATTTGTGGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTACTATTCCTAATGACAAAA
TGGAATAGGAGTGGTGGAGGGTTGCTTGAAACGCAGCATCGAAGTTCACCTTAACAAAAGGTTCT
TGAGGGGGCTTCCATATTAGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCAACTCCCT
CATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTTCCTTCCA
TTATGCACTTGTTTCAAGCTTGCCAGAATGCCCAAGCCATGACTGCAGCAATCTCACCAAAATCA
TGCCCTTGTTTCGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAAAGTTGAC
CAGTCAACACCAATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAAGGTATGCATAAA
ATTCTCACGAGCCTTTC
Found at i:24198351 original size:115 final size:115
Alignment explanation
Indices: 24198215--24198454 Score: 444
Period size: 115 Copynumber: 2.1 Consensus size: 115
24198205 CACCTAATGT
*
24198215 GTTAGGGAACGATATTTAAATTCCTCAAAAATGAATTAGTCCAAAATACTCATGTAATAAAATTT
1 GTTAGGGCACGATATTTAAATTCCTCAAAAATGAATTAGTCCAAAATACTCATGTAATAAAATTT
24198280 AAAAGAATATTCATTTGTTTAAGATTTATAAAGAAATCACGGCCCAATAC
66 AAAAGAATATTCATTTGTTTAAGATTTATAAAGAAATCACGGCCCAATAC
*
24198330 GTTAGGGCACGATATTTAAATTCCTCAAAAATGAATTAGTCCAAAATACTCGTGTAATAAAATTT
1 GTTAGGGCACGATATTTAAATTCCTCAAAAATGAATTAGTCCAAAATACTCATGTAATAAAATTT
* *
24198395 AAAAGAATATTCATTTGTTTAATATTTATAAAGAAATCGCGGCCCAATAC
66 AAAAGAATATTCATTTGTTTAAGATTTATAAAGAAATCACGGCCCAATAC
24198445 GTTAGGGCAC
1 GTTAGGGCAC
24198455 AATTTCTCAA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 121 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (115 bp):
GTTAGGGCACGATATTTAAATTCCTCAAAAATGAATTAGTCCAAAATACTCATGTAATAAAATTT
AAAAGAATATTCATTTGTTTAAGATTTATAAAGAAATCACGGCCCAATAC
Found at i:24199888 original size:19 final size:19
Alignment explanation
Indices: 24199864--24199955 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
24199854 AATCATATCT
24199864 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
24199883 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
24199902 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
24199921 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
24199940 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
24199956 CTTGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:24199913 original size:38 final size:38
Alignment explanation
Indices: 24199841--24199955 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
24199831 AAATTAAATC
*
24199841 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
24199883 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
24199921 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
24199956 CTTGAAGATT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 54 0.75
41 7 0.10
42 11 0.15
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Done.