Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 85 of 182
Found at i:25534096 original size:21 final size:21
Alignment explanation
Indices: 25534072--25534129 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
25534062 ATATACAGAT
*
25534072 GTGTGTTTCAGCCACAC-GATC
1 GTGTGTTTCAGCCACACAG-GC
* * * *
25534093 GTGTATCTCTGCCAAACAGGC
1 GTGTGTTTCAGCCACACAGGC
25534114 GTGTGTTTCAGCCACA
1 GTGTGTTTCAGCCACA
25534130 TAGACGCATA
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (21 bp):
GTGTGTTTCAGCCACACAGGC
Found at i:25538518 original size:6 final size:6
Alignment explanation
Indices: 25538507--25538597 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
25538497 GAAATCTAAG
* * *
25538507 AAAATA AAAATA AAAATAA AATAACTA AAAACA AAAATA AACATA AACATA
1 AAAATA AAAATA AAAAT-A AA-AA-TA AAAATA AAAATA AAAATA AAAATA
* * *
25538558 AAAATAA AAAATA AAACTA AAAAGAA AAAATA AAACTA AA
1 AAAAT-A AAAATA AAAATA AAAA-TA AAAATA AAAATA AA
25538598 TGATCCTCAT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
6 49 0.69
7 16 0.23
8 5 0.07
9 1 0.01
ACGTcount: A:0.78, C:0.07, G:0.01, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:25538592 original size:19 final size:19
Alignment explanation
Indices: 25538507--25538597 Score: 98
Period size: 19 Copynumber: 4.7 Consensus size: 19
25538497 GAAATCTAAG
*
25538507 AAAATAAAAATAAAAATAA
1 AAAATAAAACTAAAAATAA
25538526 AATAACTAAAAAC-AAAAAT-A
1 AA-AA-T-AAAACTAAAAATAA
*
25538546 AACAT-AAACATAAAAATAA
1 AAAATAAAAC-TAAAAATAA
*
25538565 AAAATAAAACTAAAAAGAA
1 AAAATAAAACTAAAAATAA
25538584 AAAATAAAACTAAA
1 AAAATAAAACTAAA
25538598 TGATCCTCAT
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
16 4 0.07
18 7 0.11
19 30 0.49
20 9 0.15
21 7 0.11
22 4 0.07
ACGTcount: A:0.78, C:0.07, G:0.01, T:0.14
Consensus pattern (19 bp):
AAAATAAAACTAAAAATAA
Found at i:25540299 original size:34 final size:33
Alignment explanation
Indices: 25540261--25540324 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
25540251 TGATCCCTTA
* *
25540261 ACAGTAACAGTATCAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTAGCAAT-TGGGCCTTAGCCCAAT
* *
25540295 ACAGTAACGGTGGCAATTGGGCCTTAGCCC
1 ACAGTAACAGTAGCAATTGGGCCTTAGCCC
25540325 CCATCAGCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 13 0.50
34 13 0.50
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (33 bp):
ACAGTAACAGTAGCAATTGGGCCTTAGCCCAAT
Found at i:25540852 original size:55 final size:53
Alignment explanation
Indices: 25540776--25540923 Score: 188
Period size: 55 Copynumber: 2.8 Consensus size: 53
25540766 TACCCATCGA
*
25540776 GGGTATTTTGATAATTTTACCCATCGAGGGTATTTCAGTCATTCTACCTTATAGG
1 GGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTCTACCTT-T-GG
* * ** * * *
25540831 GGGTATTTCGATCATTTTACCCTTCGAGGGTATTTTGGTAATTTTACCTTTTG
1 GGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTCTACCTTTGG
* *
25540884 GGGTATTTCAATAATTTTACCCATTGAGGGTATTTCAGTC
1 GGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTC
25540924 CAGATATCAA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 34 0.44
54 1 0.01
55 43 0.55
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (53 bp):
GGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTCTACCTTTGG
Found at i:25540920 original size:27 final size:27
Alignment explanation
Indices: 25540733--25540919 Score: 180
Period size: 27 Copynumber: 6.9 Consensus size: 27
25540723 GATATTTTAG
* * *
25540733 TAATTTTACCCATCGAGTGTTTTTTGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
25540760 TAATTTTACCCATCGAGGGTATTTTGA
1 TAATTTTACCCATCGAGGGTATTTCGA
25540787 TAATTTTACCCATCGAGGGTATTTC-A
1 TAATTTTACCCATCGAGGGTATTTCGA
* * * * *
25540813 GTCATTCTACCTTATAGGGGGTATTTCGA
1 -TAATTTTACC-CATCGAGGGTATTTCGA
* * * *
25540842 TCATTTTACCCTTCGAGGGTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGA
** * *
25540869 TAATTTTACCTTTTG-GGGTATTTCAA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
25540895 TAATTTTACCCATTGAGGGTATTTC
1 TAATTTTACCCATCGAGGGTATTTC
25540920 AGTCCAGATA
Statistics
Matches: 133, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 22 0.17
27 89 0.67
28 21 0.16
29 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (27 bp):
TAATTTTACCCATCGAGGGTATTTCGA
Found at i:25542657 original size:27 final size:26
Alignment explanation
Indices: 25542627--25542679 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
25542617 ACACATAAAA
25542627 ATAAGAATAAAAAACAAATAGAAATAT
1 ATAAGAATAAAAAACAAATA-AAATAT
* *
25542654 ATAAGAATAATAAATAAATAAAATAT
1 ATAAGAATAAAAAACAAATAAAATAT
25542680 GTAAATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.23
Consensus pattern (26 bp):
ATAAGAATAAAAAACAAATAAAATAT
Found at i:25544076 original size:41 final size:40
Alignment explanation
Indices: 25544019--25544100 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 40
25544009 CTCCTATTGT
*
25544019 GCACACGGCCTGAGACACGCTCGTGTGTCTAGGTCGTGTA
1 GCACACGGCCTGAGACACGCTCGTGTGTCTAGGGCGTGTA
25544059 NGCACACGGCCTGAGACACGCTCGTGTGTCTAGGGCGTGTA
1 -GCACACGGCCTGAGACACGCTCGTGTGTCTAGGGCGTGTA
25544100 G
1 G
25544101 GTCATAACCC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.17, C:0.27, G:0.34, T:0.21
Consensus pattern (40 bp):
GCACACGGCCTGAGACACGCTCGTGTGTCTAGGGCGTGTA
Found at i:25555165 original size:281 final size:281
Alignment explanation
Indices: 25554662--25555223 Score: 1097
Period size: 281 Copynumber: 2.0 Consensus size: 281
25554652 GTGAAGAAGT
* *
25554662 GGACATGCATGACATACCGATATTGATTAATTTAGATCTCTATACCAATTCTCAAAGAAGCAACA
1 GGACATGCATGACATACCCATATTGATTAATTTAGATCTCTATACCAATTCTCAAAGAAGAAACA
25554727 CTAAAGATTTCAAAAAGTTGATGGCATATGATTTCCTACATAAGAAGCATTCATATAATTTACAC
66 CTAAAGATTTCAAAAAGTTGATGGCATATGATTTCCTACATAAGAAGCATTCATATAATTTACAC
25554792 TTGTTCTTTCTCTCATAAATTTTGTGATATGTCTTCATTTTAAAAATAAAAAAGAAATAAAATTA
131 TTGTTCTTTCTCTCATAAATTTTGTGATATGTCTTCATTTTAAAAATAAAAAAGAAATAAAATTA
25554857 AACTAAAACTAGATGTACCATATGAACAACAAAAGCTCCCAGGAAAACTTCCATTTTGGCCTTAC
196 AACTAAAACTAGATGTACCATATGAACAACAAAAGCTCCCAGGAAAACTTCCATTTTGGCCTTAC
25554922 TGGCTATTGGACAACATTTTC
261 TGGCTATTGGACAACATTTTC
25554943 GGACATGCATGACATACCCATATTGATTAATTTAGATCTCTATACCAATTCTCAAAGAAGAAACA
1 GGACATGCATGACATACCCATATTGATTAATTTAGATCTCTATACCAATTCTCAAAGAAGAAACA
25555008 CTAAAGATTTCAAAAAGTTGATGGCATATGATTTCCTACATAAGAAGCATTCATATAATTTACAC
66 CTAAAGATTTCAAAAAGTTGATGGCATATGATTTCCTACATAAGAAGCATTCATATAATTTACAC
*
25555073 TTGTTCTTTCTCTCATAAATTTTGTGATATGTTTTCATTTTAAAAATAAAAAAGAAATAAAATTA
131 TTGTTCTTTCTCTCATAAATTTTGTGATATGTCTTCATTTTAAAAATAAAAAAGAAATAAAATTA
25555138 AACTAAAACTAGATGTACCATATGAACAACAAAAGCTCCCAGGAAAACTTCCATTTTGGCCTTAC
196 AACTAAAACTAGATGTACCATATGAACAACAAAAGCTCCCAGGAAAACTTCCATTTTGGCCTTAC
25555203 TGGCTATTGGACAACATTTTC
261 TGGCTATTGGACAACATTTTC
25555224 TTCCCAAGCT
Statistics
Matches: 278, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
281 278 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (281 bp):
GGACATGCATGACATACCCATATTGATTAATTTAGATCTCTATACCAATTCTCAAAGAAGAAACA
CTAAAGATTTCAAAAAGTTGATGGCATATGATTTCCTACATAAGAAGCATTCATATAATTTACAC
TTGTTCTTTCTCTCATAAATTTTGTGATATGTCTTCATTTTAAAAATAAAAAAGAAATAAAATTA
AACTAAAACTAGATGTACCATATGAACAACAAAAGCTCCCAGGAAAACTTCCATTTTGGCCTTAC
TGGCTATTGGACAACATTTTC
Found at i:25558360 original size:27 final size:27
Alignment explanation
Indices: 25558330--25558580 Score: 344
Period size: 27 Copynumber: 9.3 Consensus size: 27
25558320 CTAAAATAGA
*
25558330 TAAAATCACCAAAATACCCCCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
* *
25558357 TAAAATGATCAAAATACCCTCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
* * *
25558384 TAAAATGACTAAAATACCCCTATA-AG
1 TAAAATGACCAAAATACCCCCATAGGG
* *
25558410 TAAAATGACCGAAATACCCCCATAAGG
1 TAAAATGACCAAAATACCCCCATAGGG
* *
25558437 TAAAATGATCAAAATACCCCCGTAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
*
25558464 TAAAATGACCAAAATACCACCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
25558491 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
* * *
25558518 TAAAA-GGCCGAAATACCCTCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
*
25558544 TAAAATGACCAAAATACCCCCCACAGGG
1 TAAAATGACCAAAATA-CCCCCATAGGG
25558572 TAAAATGAC
1 TAAAATGAC
25558581 TGTTATACCC
Statistics
Matches: 194, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 45 0.23
27 131 0.68
28 18 0.09
ACGTcount: A:0.45, C:0.24, G:0.15, T:0.17
Consensus pattern (27 bp):
TAAAATGACCAAAATACCCCCATAGGG
Found at i:25558463 original size:80 final size:80
Alignment explanation
Indices: 25558325--25558563 Score: 349
Period size: 80 Copynumber: 3.0 Consensus size: 80
25558315 AGACCCTAAA
*
25558325 ATAGA-TAAAATCACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAA
1 ATAGAGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAA
*
25558389 TGACTAAAATACCCC
66 TGACCAAAATACCCC
* * * *
25558404 TATA-AGTAAAATGACCGAAATACCCCCATAAGGTAAAATGATCAAAATACCCCCGTAGGGTAAA
1 -ATAGAGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAA
25558468 ATGACCAAAATACCACC
65 ATGACCAAAATACC-CC
* ** *
25558485 ATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAA-GGCCGAAATACCCTCATAGGGTAAAA
1 ATAGAGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAA
25558549 TGACCAAAATACCCC
66 TGACCAAAATACCCC
25558564 CCACAGGGTA
Statistics
Matches: 142, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.02
80 106 0.75
81 33 0.23
ACGTcount: A:0.45, C:0.23, G:0.14, T:0.17
Consensus pattern (80 bp):
ATAGAGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAA
TGACCAAAATACCCC
Found at i:25558529 original size:107 final size:107
Alignment explanation
Indices: 25558330--25558580 Score: 362
Period size: 107 Copynumber: 2.3 Consensus size: 107
25558320 CTAAAATAGA
* * *
25558330 TAAAATCACCAAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGACTA
1 TAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAATGACCA
*
25558395 AAATACCCCTATAAGTAAAATGACCGAAATACCCCCATAAGG
66 AAATACCCCCATAAGTAAAATGACCGAAATACCCCCATAAGG
* *
25558437 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCAAAATACCAC-CATAGGGTAAAATGACC
1 TAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACC-CTCATAGGGTAAAATGACC
* * * *
25558501 AAAATACCCCCATAGGGTAAAA-GGCCGAAATACCCTCATAGGG
65 AAAATACCCCCATA-AGTAAAATGACCGAAATACCCCCATAAGG
*
25558544 TAAAATGACCAAAATACCCCCCACAGGGTAAAATGAC
1 TAAAATGACCAAAATA-CCCCCATAGGGTAAAATGAC
25558581 TGTTATACCC
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
107 103 0.80
108 25 0.20
ACGTcount: A:0.45, C:0.24, G:0.15, T:0.17
Consensus pattern (107 bp):
TAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAATGACCA
AAATACCCCCATAAGTAAAATGACCGAAATACCCCCATAAGG
Found at i:25560575 original size:18 final size:19
Alignment explanation
Indices: 25560552--25560588 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
25560542 TTACAATGAA
*
25560552 ATTT-AATTAATGGAAAAT
1 ATTTAAATTAATGCAAAAT
25560570 ATTTAAATTAATGCAAAAT
1 ATTTAAATTAATGCAAAAT
25560589 TGTGCTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
ATTTAAATTAATGCAAAAT
Found at i:25560631 original size:40 final size:40
Alignment explanation
Indices: 25560586--25560667 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
25560576 ATTAATGCAA
25560586 AATTGTGCTACATC-AATTAAATTGCATAGGTAATTACAAT
1 AATTGTGCTACA-CAAATTAAATTGCATAGGTAATTACAAT
* * *
25560626 AATTGTGGTGCACAAATTAAATTGCATGGGTAATTACAAT
1 AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
25560666 AA
1 AA
25560668 AAATTAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (40 bp):
AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
Found at i:25562825 original size:20 final size:21
Alignment explanation
Indices: 25562800--25562841 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
25562790 TGGAATGGTT
25562800 AATTTAA-TCAATTTAGCTTG
1 AATTTAATTCAATTTAGCTTG
* *
25562820 AATTTAATTCATTTTAGGTTG
1 AATTTAATTCAATTTAGCTTG
25562841 A
1 A
25562842 TTGTATTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (21 bp):
AATTTAATTCAATTTAGCTTG
Found at i:25577193 original size:77 final size:78
Alignment explanation
Indices: 25577063--25577222 Score: 250
Period size: 77 Copynumber: 2.0 Consensus size: 78
25577053 AAGCAGGGAG
*
25577063 GAAATTCTTTTGTTCACAAAAGAAAAAAAAAATAACCAAATGAGAAAGAGAAGAAATTTTTGTCA
1 GAAATTATTTTGTTCACAAAAG--AAAAAAAATAACCAAATGAGAAAGAGAAGAAATTTTTGTCA
25577128 AAGTCTTGTTTATGA
64 AAGTCTTGTTTATGA
* * * *
25577143 GAAATTATTTTGTTCAGAAAAG-AAAAAAATCACCAAGTGAGAAAGAGAAGAATTTTTTGTCAAA
1 GAAATTATTTTGTTCACAAAAGAAAAAAAATAACCAAATGAGAAAGAGAAGAAATTTTTGTCAAA
25577207 GTCTTGTTTATGA
66 GTCTTGTTTATGA
25577220 GAA
1 GAA
25577223 GGCCAAGCAA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
77 55 0.73
80 20 0.27
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (78 bp):
GAAATTATTTTGTTCACAAAAGAAAAAAAATAACCAAATGAGAAAGAGAAGAAATTTTTGTCAAA
GTCTTGTTTATGA
Found at i:25580105 original size:19 final size:18
Alignment explanation
Indices: 25580077--25580112 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
25580067 TACAATTAAA
*
25580077 TTTAATTAATGGAAAATC
1 TTTAATTAATGAAAAATC
25580095 TTTATATTAATGAAAAAT
1 TTTA-ATTAATGAAAAAT
25580113 TGTGCTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (18 bp):
TTTAATTAATGAAAAATC
Found at i:25580155 original size:40 final size:40
Alignment explanation
Indices: 25580110--25580191 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 40
25580100 ATTAATGAAA
*
25580110 AATTGTGCTACATC-AATTAAATAT-CATATGTAATTACAAT
1 AATTGTGCTACA-CAAATTAAAT-TGCATAGGTAATTACAAT
* * *
25580150 AATTGTGGTGCACAAATTAAATTGCATGGGTAATTACAAT
1 AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
25580190 AA
1 AA
25580192 AAATTAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.06
40 34 0.94
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (40 bp):
AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
Found at i:25586759 original size:12 final size:13
Alignment explanation
Indices: 25586742--25586770 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
25586732 CTCATACATG
25586742 AATAAATAAA-GC
1 AATAAATAAATGC
25586754 AATAAATAAATGC
1 AATAAATAAATGC
25586767 AATA
1 AATA
25586771 GTTATAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:25606022 original size:13 final size:13
Alignment explanation
Indices: 25605986--25606026 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
25605976 TTTGGTCAAT
*
25605986 GTTTATAATGG-C
1 GTTTATAATGGTG
*
25605998 GTGTAT-ATGGTG
1 GTTTATAATGGTG
25606010 GTTTATAATGGTG
1 GTTTATAATGGTG
25606023 GTTT
1 GTTT
25606027 TGATGAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
11 4 0.17
12 10 0.42
13 10 0.42
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (13 bp):
GTTTATAATGGTG
Found at i:25606634 original size:25 final size:25
Alignment explanation
Indices: 25606606--25606658 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
25606596 TCAGACAGTT
* *
25606606 ACACGGCCTGGCATACGGGCATGTG
1 ACACGACCTGGCACACGGGCATGTG
* *
25606631 ACACGACCTGGCACATGGGCGTGTG
1 ACACGACCTGGCACACGGGCATGTG
25606656 ACA
1 ACA
25606659 TGGCTATGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.34, T:0.15
Consensus pattern (25 bp):
ACACGACCTGGCACACGGGCATGTG
Found at i:25611503 original size:12 final size:12
Alignment explanation
Indices: 25611483--25611555 Score: 65
Period size: 12 Copynumber: 5.8 Consensus size: 12
25611473 GAAGTTTAAG
* *
25611483 AAAATAAAACTA
1 AAAAGAAAAATA
25611495 AAAAGAAAAATAA
1 AAAAGAAAAAT-A
* *
25611508 AACAACTAAAAAGA
1 AA-AA-GAAAAATA
*
25611522 AAAAGAAAAAGA
1 AAAAGAAAAATA
*
25611534 AAAAGAAAACTA
1 AAAAGAAAAATA
25611546 AAAAGAAAAA
1 AAAAGAAAAA
25611556 AGAAAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
12 35 0.70
13 5 0.10
14 5 0.10
15 5 0.10
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.07
Consensus pattern (12 bp):
AAAAGAAAAATA
Found at i:25611516 original size:21 final size:21
Alignment explanation
Indices: 25611490--25611530 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25611480 AAGAAAATAA
*
25611490 AACTAAAAAGAAAAATAAAAC
1 AACTAAAAAGAAAAAGAAAAC
25611511 AACTAAAAAGAAAAAGAAAA
1 AACTAAAAAGAAAAAGAAAA
25611531 AGAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (21 bp):
AACTAAAAAGAAAAAGAAAAC
Found at i:25611525 original size:27 final size:26
Alignment explanation
Indices: 25611494--25611574 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 26
25611484 AAATAAAACT
25611494 AAAAAGAAAAATAAAACAACTAAAAAGAA
1 AAAAAGAAAAA-AAAA-AACTAAAAAG-A
*
25611523 AAAGAAAAAGAAAAAGAAAACTAAAAAGA
1 AAA-AAGAA-AAAAA-AAAACTAAAAAGA
25611552 AAAAAGAAAAAAATAAAACTAAA
1 AAAAAGAAAAAAA-AAAACTAAA
25611575 TGATCATCAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
27 14 0.30
28 4 0.09
29 7 0.15
30 16 0.35
31 5 0.11
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.06
Consensus pattern (26 bp):
AAAAAGAAAAAAAAAAACTAAAAAGA
Found at i:25611569 original size:6 final size:6
Alignment explanation
Indices: 25611515--25611562 Score: 69
Period size: 6 Copynumber: 7.8 Consensus size: 6
25611505 TAAAACAACT
**
25611515 AAAAAG AAAAAG AAAAAG AAAAAG AAAACT AAAAAG AAAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAA
25611563 AATAAAACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:25614169 original size:29 final size:30
Alignment explanation
Indices: 25614119--25614175 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
25614109 TCAGACATGC
* * *
25614119 CCGTGTGTCTAGGCCGTGTGGCACACACAG
1 CCGTGTGTCCAGGCCATATGGCACACACAG
*
25614149 CCGTGTG-CCAGGCCATATGGCATACAC
1 CCGTGTGTCCAGGCCATATGGCACACAC
25614176 TGTCCTGTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (30 bp):
CCGTGTGTCCAGGCCATATGGCACACACAG
Found at i:25622617 original size:27 final size:27
Alignment explanation
Indices: 25622581--25622636 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
25622571 AAACTCGTCG
25622581 AATGGCAACAACATCAAATCAGCAGGA
1 AATGGCAACAACATCAAATCAGCAGGA
*
25622608 AATGGTAACAACATCAAATCAGCAGGA
1 AATGGCAACAACATCAAATCAGCAGGA
25622635 AA
1 AA
25622637 ACATAAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.50, C:0.20, G:0.18, T:0.12
Consensus pattern (27 bp):
AATGGCAACAACATCAAATCAGCAGGA
Found at i:25625439 original size:37 final size:37
Alignment explanation
Indices: 25625369--25625458 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
25625359 AACTATAAAG
25625369 GCCGAATGC--ACATAT-T-CACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
* * *
25625402 GCCGAATGCATACATATATACACTTATATCTATCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
*
25625439 GCCGAATGCATACAAATATA
1 GCCGAATGCATACATATATA
25625459 TATCCACCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
33 9 0.18
35 6 0.12
36 1 0.02
37 33 0.67
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (37 bp):
GCCGAATGCATACATATATACACTTATACCCACCTAT
Found at i:25625721 original size:41 final size:41
Alignment explanation
Indices: 25625671--25625764 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 41
25625661 AATTCATCAT
* *
25625671 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
25625712 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
25625753 ATTCATATCACC
1 ATTCAGATCACC
25625765 AATTCCAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:25626021 original size:15 final size:17
Alignment explanation
Indices: 25625983--25626023 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
25625973 ATCCACATAT
25625983 ATATATATATTACACAC
1 ATATATATATTACACAC
*
25626000 ATATATATATT-CGCAC
1 ATATATATATTACACAC
25626016 AT-TATATA
1 ATATATATA
25626024 AACACCACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.26
16 6 0.26
17 11 0.48
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (17 bp):
ATATATATATTACACAC
Found at i:25626022 original size:19 final size:18
Alignment explanation
Indices: 25625976--25626023 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
25625966 TTGTTCGATC
25625976 CACATATATATATATATTA
1 CACAT-TATATATATATTA
* *
25625995 CACA-CATATATATATTCG
1 CACATTATATATATATT-A
25626013 CACATTATATA
1 CACATTATATA
25626024 AACACCACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.46
18 4 0.17
19 9 0.38
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.38
Consensus pattern (18 bp):
CACATTATATATATATTA
Found at i:25626485 original size:162 final size:162
Alignment explanation
Indices: 25626218--25626539 Score: 617
Period size: 162 Copynumber: 2.0 Consensus size: 162
25626208 GAATTTTTCC
25626218 TAACAGACTTACCTCGGACAGTGAAAAATTGAAATCGGATAATTAGTCGACGATTTTGGGTTTTC
1 TAACAGACTTACCTCGGACAGTGAAAAATTGAAATCGGATAATTAGTCGACGATTTTGGGTTTTC
25626283 CCCGATCTAGCTCCAATTTCTTTAGTTCTTGATCTAAACATATTCAAAATGAGCTAGTTTAAATA
66 CCCGATCTAGCTCCAATTTCTTTAGTTCTTGATCTAAACATATTCAAAATGAGCTAGTTTAAATA
25626348 TTATTAACTTCAATTTAATCCAAAAACACAGT
131 TTATTAACTTCAATTTAATCCAAAAACACAGT
*
25626380 TAACAGACTTACCTCGGACAGTGAAAAATTGAAATCGGATAATTAGTCGACGATTTTGGTTTTTC
1 TAACAGACTTACCTCGGACAGTGAAAAATTGAAATCGGATAATTAGTCGACGATTTTGGGTTTTC
* *
25626445 CCCGATCTAGCTCCGATTTCTTTAGTTCTTTATCTAAACATATTCAAAATGAGCTAGTTTAAATA
66 CCCGATCTAGCTCCAATTTCTTTAGTTCTTGATCTAAACATATTCAAAATGAGCTAGTTTAAATA
25626510 TTATTAACTTCAATTTAATCCAAAAACACA
131 TTATTAACTTCAATTTAATCCAAAAACACA
25626540 TAAATGGAAA
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 157 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (162 bp):
TAACAGACTTACCTCGGACAGTGAAAAATTGAAATCGGATAATTAGTCGACGATTTTGGGTTTTC
CCCGATCTAGCTCCAATTTCTTTAGTTCTTGATCTAAACATATTCAAAATGAGCTAGTTTAAATA
TTATTAACTTCAATTTAATCCAAAAACACAGT
Found at i:25626833 original size:143 final size:143
Alignment explanation
Indices: 25626608--25626893 Score: 554
Period size: 143 Copynumber: 2.0 Consensus size: 143
25626598 ATTACACAAA
*
25626608 ACACAAAACATTCAAATTTTGACTATACTATGGTTAGGCCGAAACTTCATTATACTCATACAAGT
1 ACACAAAACATTCAAATTTTGACTATACTATGGTTAGGCAGAAACTTCATTATACTCATACAAGT
*
25626673 CCATGCATTTCATTTATTTCGTATTTTAGTCCCTCAAAAATTTATTTTCACAATTTAGCCCTAAA
66 CCATGCATTTCAGTTATTTCGTATTTTAGTCCCTCAAAAATTTATTTTCACAATTTAGCCCTAAA
25626738 TACTCAAATTCAT
131 TACTCAAATTCAT
25626751 ACACAAAACATTCAAATTTTGACTATACTATGGTTAGGCAGAAACTTCATTATACTCATACAAGT
1 ACACAAAACATTCAAATTTTGACTATACTATGGTTAGGCAGAAACTTCATTATACTCATACAAGT
25626816 CCATGCATTTCAGTTATTTCGTATTTTAGTCCCTCAAAAATTTATTTTCACAATTTAGCCCTAAA
66 CCATGCATTTCAGTTATTTCGTATTTTAGTCCCTCAAAAATTTATTTTCACAATTTAGCCCTAAA
25626881 TACTCAAATTCAT
131 TACTCAAATTCAT
25626894 CAAAAATCCC
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 141 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (143 bp):
ACACAAAACATTCAAATTTTGACTATACTATGGTTAGGCAGAAACTTCATTATACTCATACAAGT
CCATGCATTTCAGTTATTTCGTATTTTAGTCCCTCAAAAATTTATTTTCACAATTTAGCCCTAAA
TACTCAAATTCAT
Found at i:25627129 original size:125 final size:125
Alignment explanation
Indices: 25626965--25627213 Score: 471
Period size: 125 Copynumber: 2.0 Consensus size: 125
25626955 ATCATAAAAT
* *
25626965 TCAAACATCCATCAATGGCACATTTCAAAATTATCATCAATTCACAAAATTTAAGTATGGGTTTT
1 TCAAACATCCATCAATGGCACATTTCAAAATCATCATCAATTCACAAAATTTAAGCATGGGTTTT
25627030 GAAGAACACAAAACAACGATATCAAAAATGTAAAAATTATCAAAAACCGAACAAAGAACC
66 GAAGAACACAAAACAACGATATCAAAAATGTAAAAATTATCAAAAACCGAACAAAGAACC
*
25627090 TCAAACATCCATCAATGGCACATTTCAAAATCATTATCAATTCACAAAATTTAAGCATGGGTTTT
1 TCAAACATCCATCAATGGCACATTTCAAAATCATCATCAATTCACAAAATTTAAGCATGGGTTTT
25627155 GAAGAACACAAAACAACGATATCAAAAATGTAAAAATTATCAAAAACCGAACAAAGAAC
66 GAAGAACACAAAACAACGATATCAAAAATGTAAAAATTATCAAAAACCGAACAAAGAAC
25627214 TAACCTTAAT
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.23
Consensus pattern (125 bp):
TCAAACATCCATCAATGGCACATTTCAAAATCATCATCAATTCACAAAATTTAAGCATGGGTTTT
GAAGAACACAAAACAACGATATCAAAAATGTAAAAATTATCAAAAACCGAACAAAGAACC
Found at i:25630640 original size:34 final size:34
Alignment explanation
Indices: 25630569--25630642 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
25630559 AATGCAAGTA
* ** *
25630569 ATCAGTAGGGCCTTTGCCCAATTTCAGTAATAGT
1 ATCAGTAGGGCCTTGGCCCAATAACAGTAACAGT
*
25630603 ATCAGTGGGGCCTTGGCCC-ATAACAGTAACAGAT
1 ATCAGTAGGGCCTTGGCCCAATAACAGTAACAG-T
25630637 ATCAGT
1 ATCAGT
25630643 CATGCAGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 10 0.29
34 24 0.71
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
ATCAGTAGGGCCTTGGCCCAATAACAGTAACAGT
Found at i:25631124 original size:27 final size:27
Alignment explanation
Indices: 25631102--25631242 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
25631092 AGGGGTATAA
25631102 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
*
25631129 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
*
25631156 CGGTCATTTTACCCTAT-AGGGGTATTT
1 CAGTCATTTTACCCTATGA-GGGTATTT
* *
25631183 C-GATCATTTTATCCTATGGGGGTATTT
1 CAG-TCATTTTACCCTATGAGGGTATTT
* *
25631210 -TGATCATTTTACCCTATGCGGGTATTT
1 CAG-TCATTTTACCCTATGAGGGTATTT
25631237 CAGTCA
1 CAGTCA
25631243 GAAATAATTC
Statistics
Matches: 101, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGAGGGTATTT
Found at i:25631136 original size:54 final size:53
Alignment explanation
Indices: 25631076--25631242 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 53
25631066 AGGTCATAAT
*
25631076 AGTCATTTCATCTCCTA-GGGGTATAACAGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTT-ATCTCCTAGGGGGTAT-TCAGTCATTTTACCCTATGAGGGTATTTC
*
25631130 AGTCATTT-TAC-CCTATGGGGGTATTTCGGTCATTTTACCCTAT-AGGGGTATTTC
1 AGTCATTTAT-CTCCTA-GGGGGTA-TTCAGTCATTTTACCCTATGA-GGGTATTTC
* ** *
25631184 -GATCATTT-TATCCTATGGGGGTATTTTGATCATTTTACCCTATGCGGGTATTTC
1 AG-TCATTTATCTCCTA-GGGGGTATTCAG-TCATTTTACCCTATGAGGGTATTTC
25631238 AGTCA
1 AGTCA
25631243 GAAATAATTC
Statistics
Matches: 97, Mismatches: 6, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
52 5 0.05
53 6 0.06
54 84 0.87
55 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (53 bp):
AGTCATTTATCTCCTAGGGGGTATTCAGTCATTTTACCCTATGAGGGTATTTC
Found at i:25631178 original size:81 final size:81
Alignment explanation
Indices: 25631091--25631242 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
25631081 TTTCATCTCC
*
25631091 TAGGGGTATAAC-AGTCATTTTACCCTATGAGGGTATTTCAG-TCATTTTACCCTATGGGGGTAT
1 TAGGGGTATAACGA-TCATTTTACCCTATGAGGGTATTT-AGATCATTTTACCCTATGCGGGTAT
*
25631154 TTCGGTCATTTTACCCTA
64 TTCAGTCATTTTACCCTA
** * * *
25631172 TAGGGGTATTTCGATCATTTTATCCTATGGGGGTATTTTGATCATTTTACCCTATGCGGGTATTT
1 TAGGGGTATAACGATCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGCGGGTATTT
25631237 CAGTCA
66 CAGTCA
25631243 GAAATAATTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.02
81 60 0.97
82 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (81 bp):
TAGGGGTATAACGATCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGCGGGTATTT
CAGTCATTTTACCCTA
Found at i:25632334 original size:22 final size:22
Alignment explanation
Indices: 25632309--25632368 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
25632299 GAGTCCACAG
*
25632309 AGAATGTTAGTACTAGGGACAA
1 AGAATGTCAGTACTAGGGACAA
* *
25632331 AGAATGTCA-TCACTAGGGATAG
1 AGAATGTCAGT-ACTAGGGACAA
25632353 AGAATGTCAGTACTAG
1 AGAATGTCAGTACTAG
25632369 AGGCAGTGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (22 bp):
AGAATGTCAGTACTAGGGACAA
Found at i:25635940 original size:16 final size:18
Alignment explanation
Indices: 25635921--25635957 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
25635911 TCCCAACTTC
25635921 TAAAA-TCCCCAAATC-A
1 TAAAATTCCCCAAATCTA
25635937 TAAAATTCCCCAAATCTA
1 TAAAATTCCCCAAATCTA
25635955 TAA
1 TAA
25635958 CCTCTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
18 4 0.21
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAATTCCCCAAATCTA
Found at i:25636016 original size:16 final size:17
Alignment explanation
Indices: 25635976--25636018 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
25635966 ATCTTCATTG
* *
25635976 AATCCTTAAAATCTTTA
1 AATCCCTAAAATCTTGA
25635993 AATCCCTAAAAT-TTGA
1 AATCCCTAAAATCTTGA
*
25636009 AATTCCTAAA
1 AATCCCTAAA
25636019 TCATTAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (17 bp):
AATCCCTAAAATCTTGA
Found at i:25636970 original size:33 final size:33
Alignment explanation
Indices: 25636906--25636971 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
25636896 TAACTACTAA
* *
25636906 GGAGGGTGATGTTGAAGGGGTGGAAGTTGATGG
1 GGAGGGTGATGATGAAGGGGTAGAAGTTGATGG
25636939 GGAGGGTGATGATGAAGGGGTAGAA-TCTGATGG
1 GGAGGGTGATGATGAAGGGGTAGAAGT-TGATGG
25636972 TGAAGTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.24, C:0.02, G:0.52, T:0.23
Consensus pattern (33 bp):
GGAGGGTGATGATGAAGGGGTAGAAGTTGATGG
Found at i:25637218 original size:51 final size:51
Alignment explanation
Indices: 25637150--25637254 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
25637140 GAAGTTGCTA
* *
25637150 CTGATGAATATGTTGGTGATTTTGCAACATCAGATGGAGTGAATAATGTTG
1 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
*
25637201 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGGATAATGTTG
1 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
25637252 CTG
1 CTG
25637255 CTGCAAGTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (51 bp):
CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
Found at i:25642824 original size:47 final size:47
Alignment explanation
Indices: 25642771--25642865 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
25642761 ACCCGACACC
25642771 TCAAAAAGTATTATGTGTAACTCCTTACCCTTTGAATGAAGAATCTT
1 TCAAAAAGTATTATGTGTAACTCCTTACCCTTTGAATGAAGAATCTT
25642818 TCAAAAAGTATTATGTGTAACTCCTTACCCTTTGAATGAAGAATCTT
1 TCAAAAAGTATTATGTGTAACTCCTTACCCTTTGAATGAAGAATCTT
25642865 T
1 T
25642866 ACCTAGTCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.37
Consensus pattern (47 bp):
TCAAAAAGTATTATGTGTAACTCCTTACCCTTTGAATGAAGAATCTT
Found at i:25642994 original size:71 final size:71
Alignment explanation
Indices: 25642880--25643271 Score: 342
Period size: 71 Copynumber: 5.5 Consensus size: 71
25642870 AGTCACATAG
* * * **
25642880 CTATTATATCAAGGCTCACAGGTGAAAAACCGTAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
* *
25642945 TCTCAG
66 TCCCAA
* * * * * * * * *
25642951 CTATCATATTAAGGCTTACAGGTGAAGAACCATAGCCTTCAACACAATTAGCTAGAGTTGAAAAC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
25643016 TCCCAA
66 TCCCAA
* * * * *
25643022 C-AGTCATATTAAGGCTCGCAAGTGAAAAACCACAGCCTCTAATACAGTTAGCGAGAGTTACAAA
1 CTA-TCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAA
*
25643086 CTCACAA
65 CTCCCAA
* * * * *
25643093 CTGTCATATTAAGGCTCGCAAATGAAAAACCACAGCCTCCAACATAGCTAGA-GAGAGTTAAAAA
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTA-ACGAGAGTTAAAAA
25643157 C-CCCTAA
65 CTCCC-AA
* * * * * * * *
25643164 CTCTCATATTAAGGCTCGCAAGTGAAAAATCGCAACCTCCAACACAATTAGCAAGAGTTACAAAA
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTA-AAAA
*
25643229 -TCCTAA
65 CTCCCAA
* * ** * *
25643235 TTTTCATATTAAGGCTCGTAGGTGAAAAACCGCAGCC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCC
25643272 CCTAAAATAA
Statistics
Matches: 263, Mismatches: 51, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
70 3 0.01
71 254 0.97
72 6 0.02
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.21
Consensus pattern (71 bp):
CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
TCCCAA
Found at i:25643150 original size:142 final size:141
Alignment explanation
Indices: 25642885--25643271 Score: 416
Period size: 142 Copynumber: 2.7 Consensus size: 141
25642875 CATAGCTATT
* * * * * *
25642885 ATATCAAGGCTCACAGGTGAAAAACCGTAGCCTCCAACACAGTTAACGAGAGTTAAAAACTCTCA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTC-CA
* ** * * * * ** *
25642950 GCTATCATATTAAGGCTTACAGGTGAAGAACCATAGCCTTCAACACAATTAGCTAGAGTTGAAAA
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAA
*
25643015 CTCCC-AACAGTC
130 C-CCCTAACACTC
* * *
25643027 ATATTAAGGCTCGCAAGTGAAAAACCACAGCCTCTAATACAGTTAGCGAGAGTTACAAACTCACA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTC-CA
* ** * *
25643092 ACTGTCATATTAAGGCTCGCAAATGAAAAACCACAGCCTCCAACATAGCTAGAGAGAGTTAAAAA
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAA
*
25643157 CCCCTAACTCTC
130 CCCCTAACACTC
* * * * *
25643169 ATATTAAGGCTCGCAAGTGAAAAATCGCAACCTCCAACACAATTAGCAAGAGTTACAAAATCCTA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTCC-A
* * * *
25643234 ATTTTCATATTAAGGCTCGTAGGTGAAAAACCGCAGCC
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCC
25643272 CCTAAAATAA
Statistics
Matches: 202, Mismatches: 41, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
141 4 0.02
142 198 0.98
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.21
Consensus pattern (141 bp):
ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTCCAA
CTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAAC
CCCTAACACTC
Found at i:25646965 original size:25 final size:25
Alignment explanation
Indices: 25646921--25646968 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
25646911 CATGTTGGCT
25646921 TCTTATTTATTTTACAATTAATTAA
1 TCTTATTTATTTTACAATTAATTAA
25646946 TCTT-TTTATTGTTATC-ATTAATT
1 TCTTATTTATT-TTA-CAATTAATT
25646969 GTTATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 6 0.29
25 14 0.67
26 1 0.05
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (25 bp):
TCTTATTTATTTTACAATTAATTAA
Found at i:25652391 original size:32 final size:32
Alignment explanation
Indices: 25652355--25652483 Score: 258
Period size: 32 Copynumber: 4.0 Consensus size: 32
25652345 GATCATTATG
25652355 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
25652387 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
25652419 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
25652451 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
25652483 A
1 A
25652484 CCTCCTTTCG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.16, C:0.09, G:0.19, T:0.56
Consensus pattern (32 bp):
ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
Found at i:25652739 original size:30 final size:29
Alignment explanation
Indices: 25652705--25652787 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 29
25652695 ATGAAAAATT
* * **
25652705 TATAAATAAATACTAATAATTTTATTTAAA
1 TATAAATAAATATTAATAATTATAAAT-AA
* * *
25652735 TATAATTAAATTTTAATTAATTATAAATAT
1 TATAAATAAATATTAA-TAATTATAAATAA
25652765 TATAAATAAATATTAATAATTAT
1 TATAAATAAATATTAATAATTAT
25652788 GAGATCTAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
29 7 0.16
30 28 0.65
31 8 0.19
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (29 bp):
TATAAATAAATATTAATAATTATAAATAA
Found at i:25657685 original size:32 final size:32
Alignment explanation
Indices: 25657640--25657704 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
25657630 ATTTCCCTAT
25657640 TCTTTCCCCAGCCGAACCTTCGCCTTGCTACC
1 TCTTTCCCCAGCCGAACCTTCGCCTTGCTACC
* * *
25657672 TCTTTCCCTAGCCGAACCTTTGCGTTGCTACC
1 TCTTTCCCCAGCCGAACCTTCGCCTTGCTACC
25657704 T
1 T
25657705 TTCCCCTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.12, C:0.42, G:0.14, T:0.32
Consensus pattern (32 bp):
TCTTTCCCCAGCCGAACCTTCGCCTTGCTACC
Found at i:25660089 original size:44 final size:44
Alignment explanation
Indices: 25659982--25660498 Score: 357
Period size: 44 Copynumber: 11.7 Consensus size: 44
25659972 TCATTCTAAC
* * * *
25659982 CCACTGCAACTTCTGAGG-TATATGATTTGTTA-CTTCAATCTACT
1 CCACTGCAACTTC-AAGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * *
25660026 CCACTACAACTTTAGGGAGACGAAG-TTTGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGA-TAAGATTTGTAGCTTCAATCTGCT
* * *
25660070 CCACTGCAACTTCAAGGAGATAAGATTTGTGACTTGATTTAATCCGAC-
1 CCACTGCAACTTCAAGGAGATAAGATTTGT-A---GCTTCAATCTG-CT
* * * * * *
25660118 CCACTGTAACTTCCGAGG-TATAGGATTTGTCGCTTTAATCTGCT
1 CCACTGCAACTT-CAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
25660162 CCACTGTAACTTCAGGGGGATGAGATTTGTAACTTCAATATGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
25660206 CCACTGCAACTTCAATGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
25660250 ACACTACAACTTTAGGGAGATAA-AGTTTGTAACTTCAATATGCT
1 CCACTGCAACTTCAAGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * * *
25660294 CCACTCCAACATCATGGAGATAAGGTTTGTAGCTTTAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
25660338 CTAC-ACAACTTC-AGAGAGATAAGATTTGTGGTTTTAATCTACT
1 CCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTCAATCTGCT
* * ** * *
25660381 CTACTGCAACTTCAAAGAGATAAGATTCACTATCTTCAATCCGCT
1 CCACTGCAACTTCAAGGAGATAAGATT-TGTAGCTTCAATCTGCT
* * * * * * *
25660426 CCATTGTAACTTCAGGGAGATAAGATTTGTTGCTTGAATTTACT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
25660470 CCACTGCAACTTTAGGGAGATAAGATTTG
1 CCACTGCAACTTCAAGGAGATAAGATTTG
25660499 GCACGATAAC
Statistics
Matches: 369, Mismatches: 86, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
42 1 0.00
43 46 0.12
44 253 0.69
45 35 0.09
48 29 0.08
49 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:25660226 original size:136 final size:136
Alignment explanation
Indices: 25659980--25660240 Score: 362
Period size: 136 Copynumber: 1.9 Consensus size: 136
25659970 CTTCATTCTA
* * * *
25659980 ACCCACTGCAACTTCTGAGGTATATGATTTGTTACTTCAATCTACTCCACTACAACTTTAGGGAG
1 ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
* * *
25660045 ACGAAGTTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTGACTTGATTT
66 ACGAAGTTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGATTT
25660110 AATCCG
131 AATCCG
* * * * ** *
25660116 ACCCACTGTAACTTCCGAGGTATAGGATTTGTCGCTTTAATCTGCTCCACTGTAACTTCAGGGGG
1 ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
* *
25660181 ATG-AGATTTGTAACTTCAATATGCTCCACTGCAACTTCAATGAGATAAGATTTGTAACTT
66 ACGAAG-TTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTT
25660241 CAATCTGCTA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
135 2 0.02
136 106 0.98
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (136 bp):
ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
ACGAAGTTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGATTT
AATCCG
Found at i:25663238 original size:41 final size:41
Alignment explanation
Indices: 25663155--25663243 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 41
25663145 ACTGGCACTT
** * * **
25663155 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGTGTCA
1 AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
* *
25663196 AGCCTGCTAGACTTAAAGTCTGAAACATATCACTAGCATCA
1 AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
25663237 AGCCTGC
1 AGCCTGC
25663244 AAGGCACTGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
Found at i:25671559 original size:40 final size:40
Alignment explanation
Indices: 25671504--25671874 Score: 377
Period size: 40 Copynumber: 8.9 Consensus size: 40
25671494 GCATGAGCAT
25671504 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* **
25671544 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
** * *
25671584 CGGTTATATCC-GGCTAAATTTCGAAGGACCCGAAGGCATTTGTACGAG
1 TTGATATATCCGGGC------T--AA-GACCCGAAGGCATTTGTGCGAG
25671632 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* **
25671672 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
** * * *
25671712 CGGTTATATCC-GGCTAAATTTCGAAACTCGAAGGCATTTGTGCTAG
1 TTGATATATCCGGGCT-AA----G--ACCCGAAGGCATTTGTGCGAG
* * *
25671758 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
25671798 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
25671838 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
25671875 TTGCGGTTAT
Statistics
Matches: 274, Mismatches: 39, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
39 7 0.03
40 198 0.72
41 2 0.01
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
46 28 0.10
47 6 0.02
48 26 0.09
49 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:25671680 original size:88 final size:89
Alignment explanation
Indices: 25671522--25671689 Score: 266
Period size: 88 Copynumber: 1.9 Consensus size: 89
25671512 TCCGGGCTAA
* **
25671522 GACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGG
1 GACCCGAAGGCATTTGTACGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGCGG
*
25671587 TTATATCC-GGCTAAATTTCGAAG
66 ATATATCCGGGCTAAATTTCGAAG
* **
25671610 GACCCGAAGGCATTTGTACGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 GACCCGAAGGCATTTGTACGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGCGG
25671675 ATATATCCGGGCTAA
66 ATATATCCGGGCTAA
25671690 GACCCGAAGG
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 66 0.92
89 6 0.08
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (89 bp):
GACCCGAAGGCATTTGTACGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGCGG
ATATATCCGGGCTAAATTTCGAAG
Found at i:25671732 original size:128 final size:126
Alignment explanation
Indices: 25671504--25671827 Score: 576
Period size: 128 Copynumber: 2.6 Consensus size: 126
25671494 GCATGAGCAT
25671504 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
25671569 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGGACCCGAAGGCATTTGTACGAG
66 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAA--ACCCGAAGGCATTTGTACGAG
25671632 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
* * *
25671697 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAACTCGAAGGCATTTGTGCTAG
66 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAACCCGAAGGCATTTGTACGAG
* * *
25671758 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
25671823 AGGCA
66 AGGCA
25671828 TTCGTGCGAG
Statistics
Matches: 190, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
126 85 0.45
128 105 0.55
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (126 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAACCCGAAGGCATTTGTACGAG
Found at i:25671761 original size:86 final size:86
Alignment explanation
Indices: 25671651--25671902 Score: 338
Period size: 86 Copynumber: 3.0 Consensus size: 86
25671641 CCGGGCTAAG
25671651 ACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGGT
1 ACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGGT
25671716 TATATCCGGCTAAATTTCGAA
66 TATATCCGGCTAAATTTCGAA
* * * ** ** *
25671737 ACTCGAAGGCATTTGTGCTAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGA
1 ACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGGT
25671802 TATATCCGGGCT-AA----G--
66 TATATCC-GGCTAAATTTCGAA
* * * *
25671817 ACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGCGGT
1 ACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGGT
25671882 TATATCCGGCTAAATTTCGAA
66 TATATCCGGCTAAATTTCGAA
25671903 GAGACTTGGG
Statistics
Matches: 138, Mismatches: 20, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
79 4 0.03
80 62 0.45
82 1 0.01
84 1 0.01
86 66 0.48
87 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (86 bp):
ACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGCGGT
TATATCCGGCTAAATTTCGAA
Found at i:25685928 original size:27 final size:27
Alignment explanation
Indices: 25685898--25686075 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
25685888 ATATTGAGCC
* *
25685898 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
25685925 CGCACACTAAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
25685952 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
25685980 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25686007 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
25686034 CACACACTTAGGGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
25686061 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25686076 GTACAATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 99 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25687930 original size:6 final size:6
Alignment explanation
Indices: 25687912--25687949 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
25687902 AAAAAACATT
25687912 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT
25687950 TAGGTGACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:25687995 original size:31 final size:31
Alignment explanation
Indices: 25687926--25688029 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 31
25687916 GAACTAGAAT
* * * * * *
25687926 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATGAGAATCAGTATCAAGTAA
* * *
25687957 CAAAATCAGAATCGA-AATTAGTATCAAGTAA
1 CAGAATCAAAAT-GAGAATCAGTATCAAGTAA
* *
25687988 CAGAATCAAAATTAGAATCAGTATCAGGTAA
1 CAGAATCAAAATGAGAATCAGTATCAAGTAA
25688019 CAGAATCAAAA
1 CAGAATCAAAA
25688030 ATCAGAATGT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
30 1 0.02
31 57 0.97
32 1 0.02
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATGAGAATCAGTATCAAGTAA
Found at i:25688216 original size:27 final size:26
Alignment explanation
Indices: 25688174--25688234 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
25688164 GCTCAGTTAT
*
25688174 CAGATATTGTGACAGAGACACTAGATA
1 CAGATATTGTGACAGAGACACCAGA-A
* *
25688201 CAGATATTGTGGCAGAGTCACCAGAA
1 CAGATATTGTGACAGAGACACCAGAA
25688227 CAGATATT
1 CAGATATT
25688235 TCTGACATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAGAGACACCAGAA
Found at i:25689571 original size:27 final size:27
Alignment explanation
Indices: 25688939--25689564 Score: 746
Period size: 27 Copynumber: 23.4 Consensus size: 27
25688929 TTACCCCATG
* *
25688939 AGGGTATCTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
25688966 GGGGTATTTCGATATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25688993 AGGGTATTTCAGTATTTCTATCCC-ACA
1 AGGGTATTTCGGTATTTCTA-CCCTACA
* ** *
25689020 GGGGTATTTCAATAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689047 AGGG-ATTTCGGTATTTCTACCTTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689073 AGGGTATTTCGGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
25689100 AGGGTATTTCGGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689127 AGGGTATTTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689154 AGGTTATTTCGGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* * *
25689181 AGGGCATTTCAGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
25689208 AGGGTATTTCGATATTTCTATCCTAC-
1 AGGGTATTTCGGTATTTCTACCCTACA
** * *
25689234 AGAGGTATTTCCATAATTCTACCCTAGA
1 AG-GGTATTTCGGTATTTCTACCCTACA
* *
25689262 GGGGTATTTCGGAATTTCT----TACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
25689285 AGGGTATTTTGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* ** * * *
25689312 GGGGTATTTCAATAATTCTACCATACG
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
25689339 GGGGTATTTCAGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689366 AGGGTATTTCGATATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689393 AGGGTATTTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* * * *
25689420 GGGGTATTTCAGTAATTCTACCATAC-
1 AGGGTATTTCGGTATTTCTACCCTACA
25689446 AGGGTTATTTCGGTATTTCTACCCTACA
1 AGGG-TATTTCGGTATTTCTACCCTACA
*
25689474 AGGGTATTTCGGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
25689501 AGGGTGTTTCGGTATTTCTATCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
** *
25689528 AGGGTATTTCAATAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
25689555 GGGGTATTTC
1 AGGGTATTTC
25689565 AATAATTTTG
Statistics
Matches: 512, Mismatches: 76, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
23 18 0.04
26 30 0.06
27 456 0.89
28 8 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTATTTCTACCCTACA
Found at i:25689637 original size:54 final size:54
Alignment explanation
Indices: 25689556--25689793 Score: 184
Period size: 54 Copynumber: 4.4 Consensus size: 54
25689546 TACCCTACAG
* ** * * * *
25689556 GGGTATTTCAATAATTTTGTAAATCGAGTGTAAAAT-GGTAATTCTGTAAATTGG
1 GGGTATTTCGATAATTTTACAAATCGAGGGT-AAATCAGTAATTCTGTAAACTGA
* ** *
25689610 GGGTACTTT-GATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGTAAACTGA
1 GGGTA-TTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTAAACTGA
**
25689664 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATT-T-TACAA-TCGA
1 GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTA-AACT-GA
* * ** * *
25689717 CGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT-T-TACAAATCA
1 GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTA-AACTGA
* *
25689770 GGGGTATTTTGGTAATTTTACAAA
1 -GGGTATTTCGATAATTTTACAAA
25689794 CAGGGGGTAT
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
52 3 0.02
53 58 0.36
54 96 0.60
55 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTAAACTGA
Found at i:25690017 original size:27 final size:27
Alignment explanation
Indices: 25689610--25690030 Score: 409
Period size: 27 Copynumber: 15.6 Consensus size: 27
25689600 TGTAAATTGG
* * ** *
25689610 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** ** **
25689637 GGGTATTTCAGTAATTTTGTAAACTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
25689664 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
25689691 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
25689717 CGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
25689744 GGGTATTTCAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
25689771 GGGTATTTTGGTAATTTTACAAA-CAGG
1 GGGTATTTTGGTAATTTTACAAACCA-A
* * *
25689798 GGGTATTTTGATTATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
25689825 GGGTATTTTGGTAATTTTACAAA-CAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
25689851 GTGGTATTTTGGTAATTTTATAAACAAA
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
25689879 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
25689906 GGGTATTTTGGTAATTTTACAAA-CAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
25689932 GTGGTATTTTGGTAATTTTATAAACAAA
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
25689960 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
25689987 GGGTATTTTGGTAATTTTGTAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
25690014 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
25690031 GGTAGACTAA
Statistics
Matches: 338, Mismatches: 49, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
26 32 0.09
27 298 0.88
28 8 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:25691016 original size:30 final size:30
Alignment explanation
Indices: 25690962--25691023 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
25690952 TACCGCTGCG
*
25690962 CACTCTGATCCTACTATCACTATCATACTT
1 CACTCTGATCCTACTATCACTATCACACTT
*
25690992 CACTCTGATCCTACTATCATTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
25691022 CA
1 CA
25691024 ACTAGAACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.34, G:0.03, T:0.35
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:25692034 original size:6 final size:6
Alignment explanation
Indices: 25692023--25692158 Score: 57
Period size: 6 Copynumber: 21.8 Consensus size: 6
25692013 AACTAAAATT
* * * *
25692023 AGAATC AGAATC AGAATT AGGCGA-C AGAATC ATAATC -GAAATC AGGATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AG-AATC AGAATC
* * * *
25692072 AGGTAA-C AGAATC AAAATC AAAATC AGTATC AGGTAA-C AGAATC AAAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
25692122 AGAATC AGTATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC -AGAATC AGAAT
25692159 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 18, Indels: 30
0.67 0.12 0.21
Matches are distributed among these distances:
5 7 0.07
6 69 0.71
7 17 0.18
8 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:25692081 original size:31 final size:30
Alignment explanation
Indices: 25692046--25692150 Score: 165
Period size: 31 Copynumber: 3.4 Consensus size: 30
25692036 GAATTAGGCG
* *
25692046 ACAGAATCATAATCGAAATCAGGATCAGGTA
1 ACAGAATCAAAATC-AAATCAGTATCAGGTA
25692077 ACAGAATCAAAATCAAAATCAGTATCAGGTA
1 ACAGAATCAAAATC-AAATCAGTATCAGGTA
25692108 ACAGAATCAAAATCAGAATCAGTATCAGGTA
1 ACAGAATCAAAATCA-AATCAGTATCAGGTA
25692139 ACAGAATCAAAA
1 ACAGAATCAAAA
25692151 ATCAGAATGT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
30 1 0.01
31 69 0.99
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.18
Consensus pattern (30 bp):
ACAGAATCAAAATCAAATCAGTATCAGGTA
Found at i:25692337 original size:27 final size:26
Alignment explanation
Indices: 25692295--25692389 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 26
25692285 GCTCAGTTAT
* * *
25692295 CAGATATTGTGACAGAGACACTAGATA
1 CAGATTTTGTGGCAGAGACACCAGA-A
*
25692322 CAGATTTTGTGGCAGAGCCACCAGAA
1 CAGATTTTGTGGCAGAGACACCAGAA
* * * *
25692348 CATATATTTGTGGCATAGCCACCAAAAA
1 CAGAT-TTTGTGGCAGAGACACC-AGAA
**
25692376 CAGATAATGTGGCA
1 CAGATTTTGTGGCA
25692390 AAGCCACTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.09
27 44 0.79
28 7 0.12
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATTTTGTGGCAGAGACACCAGAA
Found at i:25692394 original size:27 final size:27
Alignment explanation
Indices: 25692321--25692396 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
25692311 GACACTAGAT
* * *
25692321 ACAGAT-TTTGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAAAGCCACCAAA
* * *
25692347 ACATATATTTGTGGCATAGCCACCAAAA
1 ACAGATATATGTGGCAAAGCCACC-AAA
25692375 ACAGATA-ATGTGGCAAAGCCAC
1 ACAGATATATGTGGCAAAGCCAC
25692397 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 29 0.69
28 8 0.19
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (27 bp):
ACAGATATATGTGGCAAAGCCACCAAA
Found at i:25692589 original size:22 final size:22
Alignment explanation
Indices: 25692555--25692619 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
25692545 GCAAATACGT
*
25692555 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
25692577 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
25692599 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
25692620 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:25693093 original size:54 final size:54
Alignment explanation
Indices: 25693050--25694665 Score: 2295
Period size: 54 Copynumber: 29.9 Consensus size: 54
25693040 CAAAATGGTA
* * * *
25693050 ATTT-TACCCCACGAGGGTATCTCGGTAATTCTACCCTACAAGGG-TATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* *
25693103 ATTTCTACCCTACAAGGGTATTTCAGTATTTCAACCCTACAAGGG-TATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
** * *
25693157 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACATGGTTATATCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * *
25693211 ATTTCTACCCTACAAGGGTATTTCGGTATTTCAACCCTACAAGGG-TATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
25693265 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693319 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693373 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693427 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693481 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693535 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693589 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693643 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693697 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693751 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693805 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
25693859 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * **
25693913 ATTTCTACCCTACAAGGGTATTTCGGTATTTCAACCCTACAAGGG-TATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* * * * *
25693967 ATTTCTATCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGCTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * * * *
25694021 ATTTCTACCCTACAAGGGCATTTCGGTAATTTTATCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * *
25694075 AATTCTACCATACAGGGGTATTTCAGTATTTCTACCCTACAAGGG-TATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* ** * *
25694129 ATTTCTACCTTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* ** * *
25694183 AATTCTACCCTAC-AGGGTTATTTTGGTATTTCTACCCTACAAGGG-TATTTTGGT
1 ATTTCTACCCTACAAGGG-TATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* * * * * **
25694237 ATTTCAACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * * *
25694291 AATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* * * * * **
25694345 ATTTCAACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * * *
25694399 AATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAATGG-TATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* * *
25694453 AATTT-TACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
1 -ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * **
25694507 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTGCAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
* * * *
25694561 AATTCTACCCTACAGGGGTATTTCAGTAATTCTATCCTACAAGGG-TATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGT
* * *
25694615 ATTTCTACCCTACAAGAGTATTTCAGTATTTCTACCCTGCAAGGG-TATTTC
1 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTC
25694666 AATAATTTTG
Statistics
Matches: 1430, Mismatches: 114, Indels: 37
0.90 0.07 0.02
Matches are distributed among these distances:
53 38 0.03
54 1359 0.95
55 33 0.02
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTTATTTCGGT
Found at i:25694804 original size:80 final size:79
Alignment explanation
Indices: 25694712--25695029 Score: 335
Period size: 80 Copynumber: 4.0 Consensus size: 79
25694702 GTAAATTGGG
* *
25694712 GGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAA-TGAGGGTATTTTAG
1 GGTA-TTTGATAATTTTACAAATCAG-GGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAG
*
25694775 TAATTTTGCAAACTGA
64 TAATTTTACAAACTGA
* * * *
25694791 GGTTATTTCGATAATTTTACAAATCTA-GGGTATTTTAGTAATTTTACAATC-GATGATATTTCA
1 GG-TATTT-GATAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTA
25694854 GTAATTTTACAAA-TCGA
63 GTAATTTTACAAACT-GA
* *
25694871 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTT-
1 -GGTATTTGA-TAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGA-GGGTATTTTA
*
25694934 GATAATTTTACAAACCAGA
63 G-TAATTTTACAAA-CTGA
* * * * **
25694953 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGT
1 GGTA-TTTGATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAGT
25695018 AATTTTACAAAC
65 AATTTTACAAAC
25695030 CAGGGGTATT
Statistics
Matches: 203, Mismatches: 19, Indels: 33
0.80 0.07 0.13
Matches are distributed among these distances:
79 8 0.04
80 105 0.52
81 83 0.41
82 7 0.03
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (79 bp):
GGTATTTGATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAGTA
ATTTTACAAACTGA
Found at i:25694971 original size:81 final size:81
Alignment explanation
Indices: 25694712--25695076 Score: 377
Period size: 81 Copynumber: 4.5 Consensus size: 81
25694702 GTAAATTGGG
* * * **
25694712 GGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAA-T-GAGGGTATTTTA
1 GGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTA
* *
25694774 GTAATTTTGCAAA-CTGA
64 GTAATTTTACAAACCAGA
* * * * * * * *
25694791 GGTTATTTCGATAATTTTACAAATCTA-GGGTATTTTAGTAATTTTACAATCGA-TGATATTTCA
1 GG-TATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
*
25694854 GTAATTTTACAAATC-GA
64 GTAATTTTACAAACCAGA
*
25694871 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-G
1 -GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAG
25694935 ATAATTTTACAAACCAGA
65 -TAATTTTACAAACCAGA
* * * *
25694953 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGT
*
25695018 AATTTTACAAACCAGG
66 AATTTTACAAACCAGA
** ** *
25695034 GGTATTTTGGTAATTTTGTAAGCCAAGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTT
25695077 GGTAGACTAA
Statistics
Matches: 244, Mismatches: 30, Indels: 22
0.82 0.10 0.07
Matches are distributed among these distances:
79 3 0.01
80 104 0.43
81 134 0.55
82 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGT
AATTTTACAAACCAGA
Found at i:25695063 original size:27 final size:27
Alignment explanation
Indices: 25694711--25695076 Score: 333
Period size: 27 Copynumber: 13.6 Consensus size: 27
25694701 TGTAAATTGG
* * ** *
25694711 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** **
25694738 GGGTATTTCAGTAATTTTACAAA-TGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * **
25694764 GGGTATTTTAGTAATTTTGCAAACTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
25694791 GGTTATTTCGATAATTTTACAAATCTA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
25694818 GGGTATTTTAGTAATTTTAC-AATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * ** * *
25694844 TGATATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
25694871 GGGTATTTTAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
25694898 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
25694925 GGGTATTTTGATAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
*
25694951 GAGGTATTTTGGTAATTTTACAAACCAG
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
25694979 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
25695006 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
25695033 GGGTATTTTGGTAATTTTGTAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
25695060 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
25695077 GGTAGACTAA
Statistics
Matches: 286, Mismatches: 49, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
26 46 0.16
27 239 0.84
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:25696121 original size:30 final size:30
Alignment explanation
Indices: 25696087--25696148 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
25696077 TACTGTTGCG
25696087 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
25696117 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
25696147 CA
1 CA
25696149 ACTAGAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.37, G:0.03, T:0.32
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:25697173 original size:6 final size:6
Alignment explanation
Indices: 25697162--25697279 Score: 62
Period size: 6 Copynumber: 19.0 Consensus size: 6
25697152 AATTAGGTGA
* * * * *
25697162 CAGAAT CAGAAT CGGAAT CAGTAT CAGTAT CAGGTAA- CAGAAT GAAAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
* * * *
25697211 CAAAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAGCTAA-
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAG--AAT
*
25697261 CAGAAT CAAAACT CAGAAT
1 CAGAAT CAGAA-T CAGAAT
25697280 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 20
0.70 0.13 0.16
Matches are distributed among these distances:
5 6 0.07
6 63 0.73
7 14 0.16
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:25697203 original size:31 final size:31
Alignment explanation
Indices: 25697168--25697279 Score: 145
Period size: 31 Copynumber: 3.6 Consensus size: 31
25697158 GTGACAGAAT
* *
25697168 CAGAATCGGAATCAGTATCAGTATCAGGTAA
1 CAGAATCGAAATCAGAATCAGTATCAGGTAA
*
25697199 CAGAAT-GAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCG-AAATCAGAATCAGTATCAGGTAA
* *
25697230 CAGAATCAAAATCAGAATCAGTATCAGCTAA
1 CAGAATCGAAATCAGAATCAGTATCAGGTAA
*
25697261 CAGAATCAAAACTCAGAAT
1 CAGAATCGAAA-TCAGAAT
25697280 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
30 1 0.01
31 64 0.89
32 7 0.10
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCGAAATCAGAATCAGTATCAGGTAA
Found at i:25697457 original size:27 final size:26
Alignment explanation
Indices: 25697415--25697516 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
25697405 GCTCAGTTAT
* *
25697415 CAGATATTGTGACAGAGACACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
25697442 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
25697468 CAGATATTTATGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
25697496 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
25697517 TTAACAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:25697703 original size:22 final size:22
Alignment explanation
Indices: 25697675--25697738 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
25697665 GCAAATACGT
*
25697675 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
25697697 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
25697719 TTGACAAAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
25697739 AAAGGCTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:25698196 original size:27 final size:27
Alignment explanation
Indices: 25698170--25698901 Score: 853
Period size: 27 Copynumber: 26.8 Consensus size: 27
25698160 CAAAATGGTA
* * *
25698170 ATTT-TACCCCACGAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
** * * *
25698196 AACTCTACCCTACAGGGGTATTTTGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
25698223 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
25698250 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
25698277 AATTCTACCCTA-AAGGGGTATTTCTGT
1 ATTTCTACCCTACAA-GGGTATTTCGGT
25698304 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698331 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698358 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698385 AATTCTACCCTAC-AGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
25698412 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698439 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698466 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698493 AATTCTACCCTAC-AGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
*
25698520 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* **
25698547 AATTCTACCCTACAGGTCCTACACGGGTATTTCAAT
1 -ATT-T---CTAC----CCTACAAGGGTATTTCGGT
* * *
25698583 AATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
25698610 AATTCTACCTTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
25698637 AATTCTACCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
25698664 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
25698691 ATTTCTACCCTACAAGGGCATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
25698718 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * *
25698745 AATTCTACCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
25698772 AATTCTACCCTAC-AGGGTTATTTCGAT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
*
25698799 ATTTCTACCTTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698826 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
25698853 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
25698880 AATTCTACCCTACAAGGGTATT
1 ATTTCTACCCTACAAGGGTATT
25698902 CAATAATTTT
Statistics
Matches: 608, Mismatches: 80, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
26 14 0.02
27 548 0.90
28 17 0.03
29 1 0.00
31 4 0.01
32 4 0.01
34 1 0.00
35 2 0.00
36 17 0.03
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:25699268 original size:81 final size:82
Alignment explanation
Indices: 25698947--25699314 Score: 360
Period size: 81 Copynumber: 4.5 Consensus size: 82
25698937 CTATAAATTT
* * * ** * *
25698947 GGGGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
1 GGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTT
* *
25699011 AG-TAATTTTGCAAA-CT
65 AGATAATTTTACAAACCA
* *** ** *
25699027 GAGGTTATTTCAATAATTTTACAAATC-GAGGGTATTTCAGTAATTTTAC-AATCAATGGTA-TT
1 G-GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
* *
25699089 TCGATAATTTTACAAATC-
64 TAGATAATTTTACAAACCA
** **
25699107 GAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAA-CTGGGGGTATTT
1 G-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTT
25699171 T-GATAATTTTACAAACCA
64 TAGATAATTTTACAAACCA
* * *
25699189 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATAAAGGGTATTTTA
1 GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
25699254 G-TAATTTTACAAACCA
66 GATAATTTTACAAACCA
** * *
25699270 GGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTT
25699315 GGTAAACTAA
Statistics
Matches: 250, Mismatches: 28, Indels: 19
0.84 0.09 0.06
Matches are distributed among these distances:
79 3 0.01
80 65 0.26
81 177 0.71
82 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (82 bp):
GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
GATAATTTTACAAACCA
Found at i:25699321 original size:27 final size:27
Alignment explanation
Indices: 25698947--25699314 Score: 307
Period size: 27 Copynumber: 13.7 Consensus size: 27
25698937 CTATAAATTT
* * **
25698947 GGGGTACTTTGATAATTTTACAAGTC-
1 GGGGTATTTTGGTAATTTTACAAACCA
** *
25698973 GAGGGTATTTCAGTAATTTTACAAATC-
1 G-GGGTATTTTGGTAATTTTACAAACCA
** * *
25699000 GAGGGTATTTCAGTAATTTTGCAAA-CT
1 G-GGGTATTTTGGTAATTTTACAAACCA
* *** *
25699027 GAGGTTATTTCAATAATTTTACAAATC-
1 G-GGGTATTTTGGTAATTTTACAAACCA
** *
25699054 GAGGGTATTTCAGTAATTTTAC-AATCA
1 G-GGGTATTTTGGTAATTTTACAAACCA
** * * *
25699081 ATGGTATTTCGATAATTTTACAAATC-
1 GGGGTATTTTGGTAATTTTACAAACCA
** *
25699107 GAGGGTATTTCAGTAATTTTACAAATCA
1 G-GGGTATTTTGGTAATTTTACAAACCA
**
25699135 GGGGTATTTTGGTAATTTTACAAACTG
1 GGGGTATTTTGGTAATTTTACAAACCA
*
25699162 GGGGTATTTTGATAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
25699189 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
* **
25699216 GGGGTATTTTGGTAATTTTATAAATAA
1 GGGGTATTTTGGTAATTTTACAAACCA
* *
25699243 AGGGTATTTTAGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
**
25699270 GGGGTATTTTGGTAATTTTGTAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
*
25699297 AGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTT
25699315 GGTAAACTAA
Statistics
Matches: 294, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.08
27 269 0.91
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACCA
Found at i:25705822 original size:47 final size:46
Alignment explanation
Indices: 25705668--25705979 Score: 226
Period size: 47 Copynumber: 6.7 Consensus size: 46
25705658 AGGATAAATT
* * * *
25705668 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATATATGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TCTGTGAG
* * * * *
25705717 TGCTGATGCATGTCCCAGACATGTATTACACTAGCACAACTCT-T-A-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC-TCTCTGTGAG
* * * *
25705762 GTCGATGCGTGTCCCGGACACGTCTTACACTGGCTCTCTCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTG-TGAG
* * **
25705809 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCAT-AAT-ATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGTGA-G
* * * * *
25705855 GCTGAAGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGTGAG
*
25705901 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT--G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-T-CTGTGAG
* *
25705949 GCCGAAGCATGTCCCAGATATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
25705980 AGCGTACAAA
Statistics
Matches: 206, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.02
44 28 0.14
45 2 0.01
46 52 0.25
47 61 0.30
48 36 0.17
49 17 0.08
50 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTGTGAG
Found at i:25705953 original size:140 final size:138
Alignment explanation
Indices: 25705668--25705979 Score: 353
Period size: 140 Copynumber: 2.2 Consensus size: 138
25705658 AGGATAAATT
** *
25705668 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATATATGCGTGCTGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATAT-CGTGCTGAAGCATGTCCC
* * * *
25705733 AGACATGTATTACACTAGCACAACTCTTAGTCGATGCGTGTCCCGGACACGTCTTACACTGGCTC
63 AGACATGTATTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTC
* **
25705798 TCTCTGTTGAG
128 TCTATAATGAG
*
25705809 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATAATAT-G-GCTGAAGCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-ATATCGTGCTGAAGCATGTCCCAG
* ** *
25705872 ACATGTCTTACACTAGC-CCTCGTCTGGATGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
65 ACATGTATTACACTAGCACAAC-TCT-GA-GCCGATG-CATGTCCCAGACA-CGTCTTACACTGG
*
25705936 CTCTC-ATAATGTG
125 CTCTCTATAATGAG
* *
25705949 GCCGAAGCATGTCCCAGATATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
25705980 AGCGTACAAA
Statistics
Matches: 146, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
136 2 0.01
137 35 0.24
138 2 0.01
139 22 0.15
140 61 0.42
141 24 0.16
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (138 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATATCGTGCTGAAGCATGTCCCAGA
CATGTATTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCT
ATAATGAG
Found at i:25705962 original size:94 final size:92
Alignment explanation
Indices: 25705771--25705982 Score: 291
Period size: 94 Copynumber: 2.3 Consensus size: 92
25705761 AGTCGATGCG
* * * *
25705771 TGTCCCGGACACGTCTTACACTGGCTCTCTCTGTTGAGGCCGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACATGTCTTACACTAGCCCTCTCTG-TGAGGCCGATGCATGTCCCAGACATGTCTTA
* *
25705836 CTCTGGCACTCATAATATGGCTGAAGCA
65 CACTGGCACTCATAATATGGCCGAAGCA
*
25705864 TGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGCCGATGCCATGTCCCAGACATGGTCT
1 TGTCCCAGACATGTCTTACACTAGCCCTC-TCTGTGAGGCCGATG-CATGTCCCAGACAT-GTCT
* *
25705928 TACACTGGCTCTCATAATGTGGCCGAAGCA
63 TACACTGGCACTCATAATATGGCCGAAGCA
*
25705958 TGTCCCAGATATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
25705983 GTACAAATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
92 9 0.08
93 39 0.37
94 58 0.55
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (92 bp):
TGTCCCAGACATGTCTTACACTAGCCCTCTCTGTGAGGCCGATGCATGTCCCAGACATGTCTTAC
ACTGGCACTCATAATATGGCCGAAGCA
Found at i:25706112 original size:15 final size:17
Alignment explanation
Indices: 25706092--25706123 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25706082 TATAACTTAA
25706092 CAATTC-AT-ACAATAT
1 CAATTCAATGACAATAT
25706107 CAATTCAATGACAATAT
1 CAATTCAATGACAATAT
25706124 GAATACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (17 bp):
CAATTCAATGACAATAT
Found at i:25709730 original size:30 final size:30
Alignment explanation
Indices: 25709694--25709753 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25709684 TTCCCGAGCC
*
25709694 TAGGGGCAAAAGTGTAA-TTATGCAAAAGTT
1 TAGGGGCAAAAATGTAAGTT-TGCAAAAGTT
*
25709724 TAGGGGCAAAAATGTAAGTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAAGTTTGCAAAAGTT
25709754 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAGTTTGCAAAAGTT
Found at i:25713363 original size:51 final size:51
Alignment explanation
Indices: 25713286--25713387 Score: 141
Period size: 51 Copynumber: 2.0 Consensus size: 51
25713276 ACCTTATCAT
* *
25713286 TCCTCGTCAAAGAAATCAAAAGATTATTTTAACCGTTCGACCATTTCAGCA
1 TCCTCGTCAAAGAAATCAAAAGATTATTTTAACCGATCGACCACTTCAGCA
* * * * *
25713337 TCCTCTTCAATGAAATCAAGATATTATTTTAATCGATCGACCACTTCAGCA
1 TCCTCGTCAAAGAAATCAAAAGATTATTTTAACCGATCGACCACTTCAGCA
25713388 GGATATTCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (51 bp):
TCCTCGTCAAAGAAATCAAAAGATTATTTTAACCGATCGACCACTTCAGCA
Found at i:25715442 original size:13 final size:13
Alignment explanation
Indices: 25715420--25715452 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25715410 AAGGGTTTGT
25715420 TTAT-TAAACTAA
1 TTATCTAAACTAA
25715432 TTATCTAAACTAA
1 TTATCTAAACTAA
*
25715445 TTAACTAA
1 TTATCTAA
25715453 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:25719788 original size:37 final size:37
Alignment explanation
Indices: 25719738--25719853 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
25719728 TTATTACGAA
* * * *
25719738 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25719775 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25719812 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25719849 GTCTT
1 GTCTT
25719854 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:25720144 original size:94 final size:94
Alignment explanation
Indices: 25719972--25720147 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 94
25719962 CCCTTCGGGA
* * * * *
25719972 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
25720037 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
* * * * *
25720066 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
25720130 TGTTTACATCCATCACAT
66 T-TTCACATCCATCACAT
25720148 AGAATCCTAA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:25720147 original size:47 final size:47
Alignment explanation
Indices: 25719972--25720126 Score: 229
Period size: 47 Copynumber: 3.3 Consensus size: 47
25719962 CCCTTCGGGA
* * * * * *
25719972 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25720019 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25720066 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25720113 CTTATCTCATATAT
1 CTTATCACATATAT
25720127 GCATGTTTAC
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25723560 original size:40 final size:39
Alignment explanation
Indices: 25723497--25723675 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 39
25723487 CCAGCATGGT
* * *
25723497 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
** *
25723537 TGCTCTTCGGGGTTTAGCACGGATATTTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAA
* *
25723577 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
* * *
25723617 TGCTCTTCGGAACTTAGTCCAGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAG-CCGGATAT-ATCAC-TAGCACGAA
*
25723658 AGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCC
25723676 CGGACATCAT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.03
40 101 0.85
41 9 0.08
42 6 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
Found at i:25723642 original size:80 final size:81
Alignment explanation
Indices: 25723497--25723679 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
25723487 CCAGCATGGT
* * *** *
25723497 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACAGATA
*
25723562 T-TTCAC-TAGCACGAA
66 TGGTCACTTAGCAC-AA
* * * *
25723577 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CAGAT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAG-CACAGAT
25723641 ATGGTCACTTAGCACAA
65 ATGGTCACTTAGCACAA
*
25723658 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
25723680 CATCATTCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 71 0.83
81 9 0.10
82 6 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACAGATA
TGGTCACTTAGCACAA
Found at i:25724028 original size:29 final size:29
Alignment explanation
Indices: 25723989--25724067 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
25723979 CTTAATAATC
*
25723989 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
25724019 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
25724048 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
25724068 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:25730058 original size:27 final size:27
Alignment explanation
Indices: 25730036--25730300 Score: 299
Period size: 27 Copynumber: 9.8 Consensus size: 27
25730026 CAATTTACAA
25730036 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACTGTTTTACCCTCGATTTATAG
*
25730063 AATTACTGTTTTACCCTC-AGTTTA-CG
1 AATTACTGTTTTACCCTCGA-TTTATAG
*
25730089 AAATTACTGTTTTACCCTTGATTTATAG
1 -AATTACTGTTTTACCCTCGATTTATAG
*
25730117 AATTACCGTTTTACCCTC-AGTTTATAG
1 AATTACTGTTTTACCCTCGA-TTTATAG
25730144 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACTGTTTTACCCTCGATTTATAG
** * *
25730171 AATTACCATTTTACCCTCGATTTGTAA
1 AATTACTGTTTTACCCTCGATTTATAG
* *
25730198 AATTA-TCGTTTTACCCTTGATTTACAG
1 AATTACT-GTTTTACCCTCGATTTATAG
* * *
25730225 AATTACTGGTTTACCCTC-AGTTTACAA
1 AATTACTGTTTTACCCTCGA-TTTATAG
*
25730252 AATTA-TCGTTTTACCCTCAATTTATAG
1 AATTACT-GTTTTACCCTCGATTTATAG
* *
25730279 AATTACCGTTTTACCCTTGATT
1 AATTACTGTTTTACCCTCGATT
25730301 GTGAAATTAC
Statistics
Matches: 201, Mismatches: 25, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.02
27 191 0.95
28 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (27 bp):
AATTACTGTTTTACCCTCGATTTATAG
Found at i:25730067 original size:54 final size:54
Alignment explanation
Indices: 25730029--25730295 Score: 369
Period size: 54 Copynumber: 4.9 Consensus size: 54
25730019 GTACTCCCAA
*
25730029 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAG
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* *
25730083 TTTACGAAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAG
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* * *
25730137 TTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-G
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
** * * * *
25730190 ATTTGTAAAATTA-TCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAG
1 -TTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
*
25730245 TTTACAAAATTA-TCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCT
1 TTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
25730296 TGATTGTGAA
Statistics
Matches: 188, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 185 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (54 bp):
TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
Found at i:25730121 original size:81 final size:81
Alignment explanation
Indices: 25730036--25730300 Score: 347
Period size: 81 Copynumber: 3.3 Consensus size: 81
25730026 CAATTTACAA
* *
25730036 AATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACGAAATTACTGTTT
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTT
*
25730101 TACCCTTGATTTATAG
66 TACCCTCGATTTATAG
* * **
25730117 AATTACCGTTTTACCCTC-AGTTTATAGAATTACTGTTTTACCCTC-GATTTATAGAATTACCAT
1 AATTACCGTTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCAG-TTTACAAAATTACTGT
* *
25730180 TTTACCCTCGATTTGTAA
64 TTTACCCTCGATTTATAG
* * * *
25730198 AATTATCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTA-TCGTT
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACT-GTT
*
25730262 TTACCCTCAATTTATAG
65 TTACCCTCGATTTATAG
*
25730279 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
25730301 GTGAAATTAC
Statistics
Matches: 158, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 154 0.97
82 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTT
TACCCTCGATTTATAG
Found at i:25730335 original size:27 final size:27
Alignment explanation
Indices: 25730305--25730519 Score: 254
Period size: 27 Copynumber: 8.0 Consensus size: 27
25730295 TTGATTGTGA
*
25730305 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
25730332 AATTTCTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
25730359 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
25730386 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
25730413 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
25730440 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
25730467 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
25730494 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
25730520 ACATTACCAT
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 163 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:25730764 original size:27 final size:26
Alignment explanation
Indices: 25730726--25730808 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
25730716 CGGAGGAAGC
*
25730726 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
25730753 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
25730779 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
25730806 GTT
1 GTT
25730809 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:25730928 original size:22 final size:22
Alignment explanation
Indices: 25730896--25730954 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
25730886 CCCGTTATTA
*
25730896 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
25730918 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
25730940 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
25730955 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:25731141 original size:27 final size:27
Alignment explanation
Indices: 25731119--25731192 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
25731109 TAGGTGGGTT
*
25731119 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
25731146 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
** *
25731173 TATCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
25731193 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:25731319 original size:6 final size:6
Alignment explanation
Indices: 25731310--25731411 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
25731300 TTGCATTCAC
* * *
25731310 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
25731359 -TTACTA ATAT-TG ATTCTA ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
25731407 ATTCT
1 ATTCT
25731412 CATTTTGGTT
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.08
6 65 0.83
7 5 0.06
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:25731373 original size:30 final size:30
Alignment explanation
Indices: 25731310--25731411 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
25731300 TTGCATTCAC
*
25731310 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
25731341 ATTCTGATTCTGGTTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
25731371 ATTCTAATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
25731401 ATTCTGATTCT
1 ATTCTGATTCT
25731412 CATTTTGGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
29 1 0.02
30 42 0.67
31 20 0.32
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:25737003 original size:46 final size:49
Alignment explanation
Indices: 25736894--25737008 Score: 146
Period size: 50 Copynumber: 2.4 Consensus size: 49
25736884 TGTCTTCGAC
** * *
25736894 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* *
25736944 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-AT-T-TATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
25736990 ATGGACTTACATGGCTCAT
1 ATGGACTTACATGGCTCAT
25737009 GTCTGTCCTG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 25 0.43
47 1 0.02
48 2 0.03
50 30 0.52
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:25740703 original size:39 final size:40
Alignment explanation
Indices: 25740558--25740723 Score: 264
Period size: 40 Copynumber: 4.2 Consensus size: 40
25740548 GGACTAAGAT
*
25740558 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
25740598 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
25740638 CCGAAGGCATCTTGTGCGAGTTGCTATATCC-GGCTAAGTC
1 CCGAAGGCAT-TTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
25740678 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
25740717 CCGAAGG
1 CCGAAGG
25740724 TACTTGGGTT
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 34 0.28
40 68 0.56
41 19 0.16
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:25745294 original size:14 final size:14
Alignment explanation
Indices: 25745261--25745310 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
25745251 TCCCTTTCTG
25745261 TTCTTTCT-TACTT
1 TTCTTTCTCTACTT
* *
25745274 CTCTTTCTCTATTT
1 TTCTTTCTCTACTT
25745288 TTCTTTC-CTACTT
1 TTCTTTCTCTACTT
*
25745301 TTCCTTCTCT
1 TTCTTTCTCT
25745311 GCTCCTTCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (14 bp):
TTCTTTCTCTACTT
Found at i:25746994 original size:6 final size:6
Alignment explanation
Indices: 25746970--25747033 Score: 53
Period size: 6 Copynumber: 11.2 Consensus size: 6
25746960 TTTGATTCCA
* * ** *
25746970 TTTATT TTTA-C TTTA-T TTTACT TTTCCT TTTGTT TTTATT TTTA-T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
25747015 TTTATT TTTATT TCTATT T
1 TTTATT TTTATT TTTATT T
25747034 CCAATTTTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
5 13 0.27
6 36 0.73
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:25747011 original size:17 final size:17
Alignment explanation
Indices: 25746970--25747027 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
25746960 TTTGATTCCA
* *
25746970 TTTATTTTTACTTTA-T
1 TTTATTTTCATTTTATT
* *
25746986 TTTACTTTTCCTTTTGTT
1 TTTA-TTTTCATTTTATT
*
25747004 TTTATTTTTATTTTATT
1 TTTATTTTCATTTTATT
25747021 TTTATTT
1 TTTATTT
25747028 CTATTTCCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
16 4 0.12
17 24 0.73
18 5 0.15
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTATTTTCATTTTATT
Found at i:25747025 original size:11 final size:11
Alignment explanation
Indices: 25746970--25747033 Score: 60
Period size: 11 Copynumber: 5.6 Consensus size: 11
25746960 TTTGATTCCA
*
25746970 TTTATTTTTAC
1 TTTATTTTTAT
25746981 TTTA-TTTTACT
1 TTTATTTTTA-T
*
25746992 TTTCCTTTTGT-T
1 TTT-ATTTT-TAT
25747004 TTTATTTTTAT
1 TTTATTTTTAT
25747015 TTTATTTTTAT
1 TTTATTTTTAT
25747026 TTCTATTT
1 TT-TATTT
25747034 CCAATTTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
10 6 0.14
11 25 0.57
12 9 0.20
13 3 0.07
14 1 0.02
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:25747032 original size:17 final size:17
Alignment explanation
Indices: 25746997--25747033 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
25746987 TTACTTTTCC
* *
25746997 TTTTGTTTTTATTTTTA
1 TTTTATTTTTATTTCTA
25747014 TTTTATTTTTATTTCTA
1 TTTTATTTTTATTTCTA
25747031 TTT
1 TTT
25747034 CCAATTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTATTTCTA
Found at i:25751149 original size:45 final size:45
Alignment explanation
Indices: 25751100--25751190 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
25751090 AATGGATCCC
*
25751100 GATCCAGCTGTGGCTGATGATGTAAAGAGTAATGCGCCAGCTCCT
1 GATCCAGCTGTGGCTGATGATGTAAAGAGCAATGCGCCAGCTCCT
*
25751145 GATCCAGCTGTGGCTGATGATGTAGAGAGCAATGCGCCAGCTCCT
1 GATCCAGCTGTGGCTGATGATGTAAAGAGCAATGCGCCAGCTCCT
25751190 G
1 G
25751191 CTGAAGGGGC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (45 bp):
GATCCAGCTGTGGCTGATGATGTAAAGAGCAATGCGCCAGCTCCT
Found at i:25754014 original size:33 final size:33
Alignment explanation
Indices: 25753972--25754037 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
25753962 TTCGAGGCAA
25753972 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
1 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
25754005 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
1 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
25754038 GATTTGGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (33 bp):
TTGAAACCTTACGAAAGGAATTATCCGACTCAT
Found at i:25761098 original size:44 final size:44
Alignment explanation
Indices: 25761035--25761121 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
25761025 CACGTTTGTA
*
25761035 ATCATTTTTAAGTAGGTAAGTTTGTA-AGTTGATTAAACTAGTTG
1 ATCATTTTTAAGTAGGTAAGTTCGTACA-TTGATTAAACTAGTTG
*
25761079 ATCATTTTTGAGTAGGTAAGTTCGTACATTGATTAAACTAGTT
1 ATCATTTTTAAGTAGGTAAGTTCGTACATTGATTAAACTAGTT
25761122 AATTGATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.43
Consensus pattern (44 bp):
ATCATTTTTAAGTAGGTAAGTTCGTACATTGATTAAACTAGTTG
Found at i:25763001 original size:48 final size:48
Alignment explanation
Indices: 25762930--25763260 Score: 294
Period size: 48 Copynumber: 6.9 Consensus size: 48
25762920 GACATTTGGG
* * * * *
25762930 TGATATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * *
25762978 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAAAATGGCAT-AGGCAA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCA-GCCA
* * * * * *
25763026 TG-TAATGAGAGCCAATGTAAGGCCATGTTTCGGACATGGTATTAG-TA
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * * * **
25763073 TTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * **
25763122 CGATATGAGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCAGCTT
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * * *
25763170 TGAGATGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATC-GACC-
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CCA
* * * *
25763217 TCAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 T-GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
25763261 GGCAATTCAC
Statistics
Matches: 227, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
47 5 0.02
48 219 0.96
49 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
Found at i:25763190 original size:144 final size:144
Alignment explanation
Indices: 25762930--25763197 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 144
25762920 GACATTTGGG
* * *
25762930 TGATATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCATGATATGAGAGCCAGTG
1 TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* *
25762995 TAAGACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGGCCATGTTTCGGA
66 TAAAACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTTTCGGA
25763060 CATGGTATTAGTAT
131 CATGGTATTAGTAT
* * **
25763074 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* * ** * *
25763139 TAAAACCATGTTTGGGACATGGCATCA-GCTTTG-AGATGAGAGCTAGTGTAAGACCATGT
66 TAAAACCATGTTTGGAAAATGGCAT-AGGCAATGTA-ATGAGAGCCAATGTAAGACCATGT
25763198 CTGGGATATG
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 1 0.01
144 105 0.98
145 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
TAAAACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTTTCGGA
CATGGTATTAGTAT
Found at i:25763226 original size:144 final size:144
Alignment explanation
Indices: 25762934--25763260 Score: 356
Period size: 144 Copynumber: 2.3 Consensus size: 144
25762924 TTTGGGTGAT
* * * * *
25762934 ATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCATGATATGAGAGCCAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
* *
25762999 ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGGCCATGTTTCGGACATG
66 ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTCTCGGACATG
* ** *
25763064 GTATTAGTATTGAT
131 GCATTAGTATCAAC
* * **
25763078 ATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACGATATGAGAGCCAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
* * ** * * * *
25763143 ACCATGTTTGGGACATGGCATCA-GCTTTG-AGATGAGAGCTAGTGTAAGACCATGTCTGGGATA
66 ACCATGTTTGGAAAATGGCAT-AGGCAATGTA-ATGAGAGCCAATGTAAGACCATGTCTCGGACA
*
25763206 TGGCA-TCG-ACCTCAAC
129 TGGCATTAGTA--TCAAC
* *
25763222 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
25763261 GGCAATTCAC
Statistics
Matches: 151, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 146 0.97
145 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (144 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTCTCGGACATG
GCATTAGTATCAAC
Found at i:25764831 original size:26 final size:26
Alignment explanation
Indices: 25764797--25764873 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
25764787 GCCAACACAC
*
25764797 CAATATCGCAGTAAAGCTACCAGTAA
1 CAATATCGCAGTAGAGCTACCAGTAA
* *
25764823 TAATATCGCAGTAGAGCTACCAGTGA
1 CAATATCGCAGTAGAGCTACCAGTAA
* *
25764849 CAATAACGCAATAGAGCTACCAGTA
1 CAATATCGCAGTAGAGCTACCAGTA
25764874 TCAGTATATG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.19
Consensus pattern (26 bp):
CAATATCGCAGTAGAGCTACCAGTAA
Found at i:25765505 original size:27 final size:27
Alignment explanation
Indices: 25765461--25765515 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
25765451 GGTTAAACGT
* * *
25765461 TTGGAATTAGGGTTAACACCTTCTTAC
1 TTGGAATTAAGGTCAACACCCTCTTAC
*
25765488 TTGGCATTAAGGTCAACACCCTCTTAC
1 TTGGAATTAAGGTCAACACCCTCTTAC
25765515 T
1 T
25765516 AATACTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (27 bp):
TTGGAATTAAGGTCAACACCCTCTTAC
Found at i:25772298 original size:26 final size:26
Alignment explanation
Indices: 25772246--25772317 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
25772236 AATTTCGTAG
* * * * *
25772246 CAAAGCTGCTAGTAATAATATCGCAA
1 CAAAGCTGCCAGTAACAGTAACACAA
25772272 CAAAGCTGCCAGTAACAGTAACACAA
1 CAAAGCTGCCAGTAACAGTAACACAA
* *
25772298 CAGAGCTGCCAGTATCAGTA
1 CAAAGCTGCCAGTAACAGTA
25772318 TATGTGGCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTAACACAA
Done.