Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 87 of 182
Found at i:26160057 original size:38 final size:38
Alignment explanation
Indices: 26160007--26160093 Score: 147
Period size: 38 Copynumber: 2.3 Consensus size: 38
26159997 ATATCGGTAT
*
26160007 TTCAATATTAAAATTAAAACATGATAATATTAAGCTTGG
1 TTCAA-ATTAAAATTAAAACATGATAATATTAAGCTTGA
*
26160046 TTTAAATTAAAATTAAAACATGATAATATTAAGCTTGA
1 TTCAAATTAAAATTAAAACATGATAATATTAAGCTTGA
26160084 TTCAAATTAA
1 TTCAAATTAA
26160094 TTTGATGCTC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 41 0.91
39 4 0.09
ACGTcount: A:0.48, C:0.07, G:0.08, T:0.37
Consensus pattern (38 bp):
TTCAAATTAAAATTAAAACATGATAATATTAAGCTTGA
Found at i:26164542 original size:1 final size:1
Alignment explanation
Indices: 26164536--26164640 Score: 210
Period size: 1 Copynumber: 105.0 Consensus size: 1
26164526 ACCACACTGC
26164536 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26164601 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26164641 GCCAAATTTG
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 104 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26169973 original size:39 final size:40
Alignment explanation
Indices: 26169930--26170008 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
26169920 CTCTTTCAAC
26169930 AGCACACAGC-TTTTTTTTTTTCCAACATGTATACTTTTT
1 AGCACACAGCTTTTTTTTTTTTCCAACATGTATACTTTTT
26169969 AGCACACAGCTTTTTTTTTTTTCCAACATGTATACTTTTT
1 AGCACACAGCTTTTTTTTTTTTCCAACATGTATACTTTTT
26170009 TATAAAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.23, C:0.20, G:0.08, T:0.49
Consensus pattern (40 bp):
AGCACACAGCTTTTTTTTTTTTCCAACATGTATACTTTTT
Found at i:26173255 original size:94 final size:92
Alignment explanation
Indices: 26173112--26173378 Score: 285
Period size: 94 Copynumber: 2.9 Consensus size: 92
26173102 ATGTGTGTGT
* * *
26173112 GCTAGTGTAGGACATGTCTGGGACATGTATCGGCCAC-ATTATG-AGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-TATGTAGAGCCAGTGTAAGACCATG
*
26173175 TCTGGGACATGACATCGGCATTGA-GACGA-GA
65 TCTAGGACATG-CATCGGC--T-ACGA-GATGA
* *
26173206 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAGTGTAAGA-CATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGTAGAGCCAGTGTAAGACCATGT
* *
26173269 TTAGGACATGCATCGGCTACGAGATGT
66 CTAGGACATGCATCGGCTACGAGATGA
* * * * * *
26173296 GCTAGTGTAAGACATGTTTGGAACATGCATCAGCATGGATATGTGAGAGGCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGT-AGAGCCAGTGTAAGACCATG
*
26173361 CCTAGGACATGGCATCGG
65 TCTAGGACAT-GCATCGG
26173379 TATTATACCC
Statistics
Matches: 147, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
89 3 0.02
90 41 0.28
91 1 0.01
92 19 0.13
93 25 0.17
94 56 0.38
95 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGTAGAGCCAGTGTAAGACCATGT
CTAGGACATGCATCGGCTACGAGATGA
Found at i:26173260 original size:46 final size:46
Alignment explanation
Indices: 26173115--26173378 Score: 214
Period size: 46 Copynumber: 5.7 Consensus size: 46
26173105 TGTGTGTGCT
* * * *
26173115 AGTGTAGGACATGTCTGGGACATGTATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * *
26173161 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATGAGAGCC
*
26173209 AGTGTAAGATATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * *
26173255 AGTGTAAGACATGTTTAGGACATGCATCGG-CTACGAGAT--GTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * * * *
26173299 AGTGTAAGACATGTTTGGAACATGCATCAGCATGGATATGTGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA--TGAGAGCC
* *
26173347 AGTGTAAGACCATGCCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
26173379 TATTATACCC
Statistics
Matches: 173, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
44 32 0.18
45 3 0.02
46 58 0.34
47 30 0.17
48 33 0.19
49 11 0.06
50 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:26179578 original size:46 final size:46
Alignment explanation
Indices: 26179431--26179698 Score: 246
Period size: 46 Copynumber: 5.7 Consensus size: 46
26179421 ATGTGTGTGT
* * *
26179431 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-A
* * * * * *
26179477 GCCAGTGTATGACCATGTTTGGGACATGGCATCGGCATTGAGACG-AGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-A
*
26179525 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
*
26179571 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAA
* * *
26179615 GCTAGTGTAAGACATGTCTAGAACATGCATCGG--TACGGATATGTGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-C-GAGATGT--AA
26179663 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
26179699 ATTATACCCT
Statistics
Matches: 185, Mismatches: 24, Indels: 21
0.80 0.10 0.09
Matches are distributed among these distances:
43 3 0.02
44 36 0.19
45 2 0.01
46 64 0.35
47 25 0.14
48 35 0.19
49 13 0.07
50 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
Found at i:26185157 original size:38 final size:38
Alignment explanation
Indices: 26185112--26185234 Score: 169
Period size: 38 Copynumber: 3.2 Consensus size: 38
26185102 GGCTTAAAGA
*
26185112 CCCGCAGGCTAT-ATGCTGGAATTATACCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAAT
*
26185150 CCCGCAGGCTTCACGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGG-AATTATATCCGGGTTAAAT
* * *
26185188 CCCGCAAGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
26185226 CCCGCAGGC
1 CCCGCAGGC
26185235 CTAGTGCTAG
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.03
38 71 0.95
39 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
Found at i:26185242 original size:38 final size:38
Alignment explanation
Indices: 26185112--26185271 Score: 162
Period size: 38 Copynumber: 4.2 Consensus size: 38
26185102 GGCTTAAAGA
* * *
26185112 CCCGCAGG-CTATATGCTGGAATTATACCCGGGTTAAAT
1 CCCGCAGGCCTA-GTGCTGGTATTATATCCGGGTTAAAT
* * *
26185150 CCCGCAGGCTTCA-CGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCCT-AGTGCTGGTATTATATCCGGGTTAAAT
* * *
26185188 CCCGCAAGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCCTAGTGCTGGTATTATATCCGGGTTAAAT
* * *
26185226 CCCGCAGGCCTAGTGCTAGTATTATATCTGAGCTTAAAGT
1 CCCGCAGGCCTAGTGCTGGTATTATATCCG-GGTTAAA-T
26185266 CCCGCA
1 CCCGCA
26185272 AGTTTTGTGC
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
38 87 0.85
39 7 0.07
40 8 0.08
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCCTAGTGCTGGTATTATATCCGGGTTAAAT
Found at i:26185252 original size:76 final size:78
Alignment explanation
Indices: 26185103--26185285 Score: 203
Period size: 76 Copynumber: 2.4 Consensus size: 78
26185093 GTGTATCCAG
* * * * *
26185103 GCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATACCCGGGTTAAATCCCGCAGGCTTCACGCT
1 GCTTAAAGTCCCGCAAGCT-TCGTGCTGGTATTATACCCGGGTTAAATCCCGCAGGCCTCACGCT
*
26185167 GGTAATATATCCG-
65 AGTAATATATCCGA
* * *
26185180 GGTTAAA-TCCCGCAAGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT-AGTGCT
1 GCTTAAAGTCCCGCAAGCTTCGTGCTGGTATTATACCCGGGTTAAATCCCGCAGGCCTCA-CGCT
* *
26185243 AGTATTATATCTGA
65 AGTAATATATCCGA
* *
26185257 GCTTAAAGTCCCGCAAGTTTTGTGCTGGT
1 GCTTAAAGTCCCGCAAGCTTCGTGCTGGT
26185286 GACTGGATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
75 2 0.02
76 55 0.62
77 12 0.14
78 19 0.22
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (78 bp):
GCTTAAAGTCCCGCAAGCTTCGTGCTGGTATTATACCCGGGTTAAATCCCGCAGGCCTCACGCTA
GTAATATATCCGA
Found at i:26185282 original size:40 final size:38
Alignment explanation
Indices: 26185096--26185282 Score: 135
Period size: 38 Copynumber: 4.8 Consensus size: 38
26185086 ATTTGATGTG
* * * *
26185096 TATCCAGGCTTAAAGACCCGCAGGCTATA-TGCTGGAATTA
1 TATCC-GGCTTAAA-TCCCGCAAGCT-TAGTGCTAGTATTA
* * * * * *
26185136 TACCCGGGTTAAATCCCGCAGGCTTCA-CGCTGGTAATA
1 TATCCGGCTTAAATCCCGCAAGCTT-AGTGCTAGTATTA
* * *
26185174 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTA
1 TATCCGGCTTAAATCCCGCAAGCTTAGTGCTAGTATTA
* * *
26185212 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGTATTA
1 TATCCGGCTTAAATCCCGCAAGCTTAGTGCTAGTATTA
* * *
26185250 TATCTGAGCTTAAAGTCCCGCAAGTTTTGTGCT
1 TATCCG-GCTTAAA-TCCCGCAAGCTTAGTGCT
26185283 GGTGACTGGA
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 90 0.74
39 13 0.11
40 18 0.15
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (38 bp):
TATCCGGCTTAAATCCCGCAAGCTTAGTGCTAGTATTA
Found at i:26186397 original size:48 final size:48
Alignment explanation
Indices: 26186345--26186554 Score: 184
Period size: 48 Copynumber: 4.5 Consensus size: 48
26186335 TATCCCAAAT
*
26186345 ATGGTCTTACATGGGATCATATATTGATGCCAATGCCATT-TCCCAGAC
1 ATGGTCTTACATGGGATCATATATCGATGCCAATG-CATTGTCCCAGAC
* * * * *
26186393 ATGGTCTTACGTGGGATCGTAGATCAATGCCAATGCTTTGTCCCAGAC
1 ATGGTCTTACATGGGATCATATATCGATGCCAATGCATTGTCCCAGAC
* * **
26186441 ATGGTCTTACATGGGATCAGATATCGATGCC---G-ATAG-CCCAGTT
1 ATGGTCTTACATGGGATCATATATCGATGCCAATGCATTGTCCCAGAC
**** * * *
26186484 ATGGTCTTACACAAAATTACATATCGATTCCAATGCCA-TGTCCCAGAC
1 ATGGTCTTACATGGGATCATATATCGATGCCAATG-CATTGTCCCAGAC
*
26186532 AT-GTCTTACATGGGATCGTATAT
1 ATGGTCTTACATGGGATCATATAT
26186555 AACCCTAATC
Statistics
Matches: 123, Mismatches: 32, Indels: 15
0.72 0.19 0.09
Matches are distributed among these distances:
43 29 0.24
44 2 0.02
45 1 0.01
46 1 0.01
47 18 0.15
48 72 0.59
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCATATATCGATGCCAATGCATTGTCCCAGAC
Found at i:26197226 original size:14 final size:15
Alignment explanation
Indices: 26197207--26197236 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26197197 ATATTTGACT
26197207 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
26197221 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
26197236 T
1 T
26197237 TTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:26210689 original size:26 final size:26
Alignment explanation
Indices: 26210650--26210729 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 26
26210640 GTGAGTTGTT
26210650 AATGTATT-ATGTATTGAAAGAATGAA
1 AATGTATTGA-GTATTGAAAGAATGAA
* *
26210676 ACTGTATTGAGTATTAAAATAATAGAATGAA
1 AATGTATTGAGTATT----GAA-AGAATGAA
26210707 AATGTATTGAGTATTGAAAGAAT
1 AATGTATTGAGTATTGAAAGAAT
26210730 TCTTTGTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
26 17 0.39
27 3 0.07
30 2 0.05
31 22 0.50
ACGTcount: A:0.46, C:0.01, G:0.19, T:0.34
Consensus pattern (26 bp):
AATGTATTGAGTATTGAAAGAATGAA
Found at i:26215799 original size:31 final size:31
Alignment explanation
Indices: 26215764--26215825 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
26215754 TTGTACTGAA
26215764 AGAATGAAACTGTA-CTGAGTATTGAAAGAAT
1 AGAATGAAA-TGTATCTGAGTATTGAAAGAAT
*
26215795 AGAATGAAATGTATTTGAGTATTGAAAGAAT
1 AGAATGAAATGTATCTGAGTATTGAAAGAAT
26215826 TCTTTGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.14
31 25 0.86
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (31 bp):
AGAATGAAATGTATCTGAGTATTGAAAGAAT
Found at i:26220915 original size:40 final size:41
Alignment explanation
Indices: 26220835--26220944 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 41
26220825 CGCAAAAGGT
*
26220835 TAAAACTATAGCGGCATTTTTCTCATAAACACTACAAAAGA
1 TAAAACAATAGCGGCATTTTTCTCATAAACACTACAAAAGA
* * *
26220876 TAAAACAATAGC-GC-TATTTTCTCATAAACGCTGCTAAAGA
1 TAAAACAATAGCGGCAT-TTTTCTCATAAACACTACAAAAGA
* * * *
26220916 TAAAGCAATAACGGCGTTTTTCCCATAAA
1 TAAAACAATAGCGGCATTTTTCTCATAAA
26220945 TGTCGCGACT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.02
40 33 0.56
41 24 0.41
42 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (41 bp):
TAAAACAATAGCGGCATTTTTCTCATAAACACTACAAAAGA
Found at i:26221047 original size:20 final size:21
Alignment explanation
Indices: 26221024--26221069 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
26221014 CAGTTTCCTA
*
26221024 AAATCCCTTA-TTTTTTCTCC
1 AAATCCCTTAGTTTTTTCCCC
26221044 AAATCCCTTAGTTTTTTCCCC
1 AAATCCCTTAGTTTTTTCCCC
26221065 AAATC
1 AAATC
26221070 AAATTCCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.43
Consensus pattern (21 bp):
AAATCCCTTAGTTTTTTCCCC
Found at i:26221066 original size:55 final size:56
Alignment explanation
Indices: 26220993--26221100 Score: 155
Period size: 55 Copynumber: 1.9 Consensus size: 56
26220983 ATTTTGATAG
** * * *
26220993 CCTTAGTTTTTTTCCCCAAATCAGTTTCCTAAAATCCCTTATTTTTTCTCCAAATC
1 CCTTAGTTTTTTTCCCCAAATCAAATTCCCAAAATCCCTTAGTTTTTCCCCAAATC
*
26221049 CCTTAG-TTTTTTCCCCAAATCAAATTCCCCAAATCCCTTAGTTTTTCCCCAA
1 CCTTAGTTTTTTTCCCCAAATCAAATTCCCAAAATCCCTTAGTTTTTCCCCAA
26221101 CGTCTGCTGC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 40 0.87
56 6 0.13
ACGTcount: A:0.24, C:0.31, G:0.04, T:0.41
Consensus pattern (56 bp):
CCTTAGTTTTTTTCCCCAAATCAAATTCCCAAAATCCCTTAGTTTTTCCCCAAATC
Found at i:26222128 original size:26 final size:27
Alignment explanation
Indices: 26222090--26222146 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
26222080 GTTTCTCAAG
*
26222090 GTGAGAAACAGAG-ATAAGAACAGAG-A
1 GTGAGAAACAGAGAAAAAG-ACAGAGAA
* *
26222116 GTGATAAAGAGAGAAAAAGACAGAGAA
1 GTGAGAAACAGAGAAAAAGACAGAGAA
26222143 GTGA
1 GTGA
26222147 AGCTTGTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.54, C:0.05, G:0.32, T:0.09
Consensus pattern (27 bp):
GTGAGAAACAGAGAAAAAGACAGAGAA
Found at i:26224106 original size:13 final size:14
Alignment explanation
Indices: 26224083--26224111 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26224073 TACTGTTTAA
26224083 AATATTTTGTAACT
1 AATATTTTGTAACT
26224097 AATA-TTTGTAACT
1 AATATTTTGTAACT
26224110 AA
1 AA
26224112 CTTTTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (14 bp):
AATATTTTGTAACT
Found at i:26224317 original size:16 final size:17
Alignment explanation
Indices: 26224296--26224330 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26224286 GAACATTCTT
26224296 AAAAAATA-AAAAATAA
1 AAAAAATAGAAAAATAA
*
26224312 AAAAAATAGCAAAATAA
1 AAAAAATAGAAAAATAA
26224329 AA
1 AA
26224331 TCGAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (17 bp):
AAAAAATAGAAAAATAA
Found at i:26224665 original size:35 final size:35
Alignment explanation
Indices: 26224620--26224686 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
26224610 ATATTTAAAG
26224620 ATGATAATCATAACTTACATAAACATTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
*
26224655 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
26224687 AATATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:26225096 original size:15 final size:15
Alignment explanation
Indices: 26225076--26225114 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
26225066 AGTACAAACT
*
26225076 TTTCTAAATTTTGCA
1 TTTCTAAATTTGGCA
26225091 TTTCTAAATTTGGCA
1 TTTCTAAATTTGGCA
*
26225106 TTTCAAAAT
1 TTTCTAAAT
26225115 GCAAGCCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (15 bp):
TTTCTAAATTTGGCA
Found at i:26230132 original size:48 final size:48
Alignment explanation
Indices: 26230061--26230364 Score: 446
Period size: 48 Copynumber: 6.2 Consensus size: 48
26230051 CAAGATAAAT
* *
26230061 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26230109 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
26230157 ATATATATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
26230205 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26230253 ATATATATATATATATGTGGTAAATCCGAATGGCTAATGAGAAATATGTATGAG
1 ------ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
26230307 ATATGTATATGTGGTAAGGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
26230355 ATATATATAT
1 ATATATATAT
26230365 ATATATCTCA
Statistics
Matches: 229, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
48 186 0.81
54 43 0.19
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:26230299 original size:102 final size:102
Alignment explanation
Indices: 26230053--26230370 Score: 513
Period size: 102 Copynumber: 3.2 Consensus size: 102
26230043 TTGATGTACA
* * *
26230053 AGATAAATATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 AGATATATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
26230118 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
66 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
*
26230155 AG------ATATATATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 AGATATATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
26230214 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATG
66 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
* *
26230251 AGATATATATATATATATGTGGTAAATCCGAATGGCTAATGAGAAATATGTATGAGATATGTATA
1 AGATATATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
26230316 TGTGGTAAGGCCGAATGGCTAATGTGAAATATGTATG
66 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
26230353 AGATATATATATATATAT
1 AGATATATATATATATAT
26230371 CTCATCCATA
Statistics
Matches: 200, Mismatches: 10, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
96 92 0.46
102 108 0.54
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (102 bp):
AGATATATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
Found at i:26230413 original size:48 final size:48
Alignment explanation
Indices: 26230361--26230562 Score: 386
Period size: 48 Copynumber: 4.2 Consensus size: 48
26230351 TGAGATATAT
*
26230361 ATATATATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
1 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
26230409 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
1 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
26230457 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
1 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
26230505 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
1 ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
*
26230553 ATATATATAT
1 ATATACATAT
26230563 ATATATGTGG
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 152 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (48 bp):
ATATACATATCTCATCCATATTTCATGTTAGCCCTTCGGCTTTACCAC
Found at i:26230803 original size:37 final size:37
Alignment explanation
Indices: 26230748--26230930 Score: 305
Period size: 37 Copynumber: 5.0 Consensus size: 37
26230738 GGAAATATAT
*
26230748 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26230785 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26230822 TCCGGGTAAGACCCGATGACTATGTGTGGAGATT-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26230858 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
26230895 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
26230931 TCGAGCTAAA
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
36 35 0.26
37 102 0.74
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26230888 original size:73 final size:74
Alignment explanation
Indices: 26230748--26230930 Score: 305
Period size: 73 Copynumber: 2.5 Consensus size: 74
26230738 GGAAATATAT
*
26230748 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACATGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACATGTG
26230813 GAGATTATG
66 GAGATTATG
* *
26230822 TCCGGGTAAGACCCGATGACTATGTGTGGAGATT-TGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACATGTG
*
26230886 GAGATTTTG
66 GAGATTATG
* *
26230895 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
26230931 TCGAGCTAAA
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
73 68 0.67
74 33 0.33
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACATGTG
GAGATTATG
Found at i:26233762 original size:66 final size:66
Alignment explanation
Indices: 26233686--26233813 Score: 170
Period size: 66 Copynumber: 1.9 Consensus size: 66
26233676 GCAAATTGCT
* * * *
26233686 CAACTCAAAGC-AGAGGCAGCATCGAGAGAAGCAGATGC-TCAAAGAAAATATGATGAACTCCAA
1 CAACTCAAAGCGA-AGGCAGCAGCGAGAGAAGCAAAGGCAAC-AAGAAAATATGATGAACTCCAA
26233749 CTC
64 CTC
* *
26233752 CAACTTAAAGCGAAGGCAGCAGCGAGGGAAGCAAAGGCAACAAGAAAATATGATGAACTCCA
1 CAACTCAAAGCGAAGGCAGCAGCGAGAGAAGCAAAGGCAACAAGAAAATATGATGAACTCCA
26233814 GTAAGAGCTT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
66 52 0.96
67 2 0.04
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (66 bp):
CAACTCAAAGCGAAGGCAGCAGCGAGAGAAGCAAAGGCAACAAGAAAATATGATGAACTCCAACT
C
Found at i:26234175 original size:36 final size:35
Alignment explanation
Indices: 26234115--26234183 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
26234105 GCGCTGCTAT
* * * *
26234115 AGAACATGGTCTTTAGCAGTGCTTTTATTACAAACA
1 AGAACATGATCTTTAACAGCGC-TTTACTACAAACA
*
26234151 AGAACATGATCTTTAACGGCGCTTTACTACAAA
1 AGAACATGATCTTTAACAGCGCTTTACTACAAA
26234184 TGCCGCTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
35 10 0.36
36 18 0.64
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (35 bp):
AGAACATGATCTTTAACAGCGCTTTACTACAAACA
Found at i:26237702 original size:49 final size:49
Alignment explanation
Indices: 26237630--26238414 Score: 1561
Period size: 49 Copynumber: 16.0 Consensus size: 49
26237620 AAAGTTATGT
*
26237630 TATTCCCATAAAACAATTCAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237679 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237728 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237777 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237826 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237875 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237924 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26237973 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238022 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238071 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238120 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238169 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238218 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238267 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238316 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238365 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
1 TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
26238414 T
1 T
26238415 TATTTCAAAA
Statistics
Matches: 735, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 735 1.00
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (49 bp):
TATTCCCATAAAACAATTTAGATGCAAATAAAAATAAAAATTATTATAA
Found at i:26238436 original size:5 final size:6
Alignment explanation
Indices: 26238421--26238453 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
26238411 TAATTATTTC
26238421 AAAAAT AAAAAT AAAAAT AAAAAT AAAATAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AA
26238454 TTATTATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 22 0.85
7 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:26239463 original size:18 final size:17
Alignment explanation
Indices: 26239424--26239463 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
26239414 AAAAATATAT
*
26239424 AATTTTTAGAATTTTAG
1 AATTTTTAGAATTCTAG
26239441 AATTTTCTAGAATTCTAG
1 AATTTT-TAGAATTCTAG
*
26239459 TATTT
1 AATTT
26239464 GTAAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (17 bp):
AATTTTTAGAATTCTAG
Found at i:26251739 original size:27 final size:27
Alignment explanation
Indices: 26251709--26251886 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26251699 ATATTGAGTC
* * * *
26251709 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26251736 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26251763 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26251791 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26251818 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26251845 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26251872 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26251887 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26251848 original size:82 final size:81
Alignment explanation
Indices: 26251730--26251885 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26251720 TGCTATATAA
* *
26251730 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26251795 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26251812 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26251876 CACTTAGTGC
65 CACTTAGTGC
26251886 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26254897 original size:46 final size:45
Alignment explanation
Indices: 26254723--26254924 Score: 160
Period size: 46 Copynumber: 4.4 Consensus size: 45
26254713 GTGAGCTAAA
* * *
26254723 GTAAGACATGTCTGGGACATGTATCGGCCAC-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGA-AGCCAGT
* * * * * * *
26254769 GTAAGAAAATGTCTAGGACATGGCATCAG-TATTGAGACGAAAGCTAGA
1 GTAAG-ACATGTCTGGGACAT-GCATCGGCTA-CGAGATG-AAGCCAGT
* *
26254817 GTAAGACATGTCTGGGACATGCATTAGCCT-CGAGATGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCA-TCGGCTACGAGATG-AAGCCAGT
* * *
26254863 GTAAGACATGTATGGGACATGCATCGGCTACGAGAAG-AGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAAGCCAGT
26254907 GTAAGACCATGTCTGGGA
1 GTAAGA-CATGTCTGGGA
26254925 TATGGAATTA
Statistics
Matches: 121, Mismatches: 26, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
44 12 0.10
45 14 0.12
46 47 0.39
47 28 0.23
48 18 0.15
49 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAAGCCAGT
Found at i:26256091 original size:22 final size:21
Alignment explanation
Indices: 26256066--26256106 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
26256056 TTGGATTGGT
26256066 CACACAGGCGTGT-TGCCCCTCC
1 CACAC-GG-GTGTGTGCCCCTCC
26256088 CACACGGGTGTGTGCCCCT
1 CACACGGGTGTGTGCCCCT
26256107 TGTGTCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.12, C:0.41, G:0.27, T:0.20
Consensus pattern (21 bp):
CACACGGGTGTGTGCCCCTCC
Found at i:26256422 original size:15 final size:16
Alignment explanation
Indices: 26256402--26256435 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26256392 TTATATTGTT
26256402 TTAAAG-AATTTAATA
1 TTAAAGCAATTTAATA
26256417 TTAAAGCTAATTTAATA
1 TTAAAGC-AATTTAATA
26256434 TT
1 TT
26256436 TATCTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (16 bp):
TTAAAGCAATTTAATA
Found at i:26256506 original size:31 final size:31
Alignment explanation
Indices: 26256469--26256569 Score: 127
Period size: 31 Copynumber: 3.3 Consensus size: 31
26256459 TTAACTTTAC
26256469 TTTAATATTTATATAGATAATATTTTATTAA
1 TTTAATATTTATATAGATAATATTTTATTAA
* **
26256500 TTTAATA-TTATTATA-A-GATATTAAATTAAA
1 TTTAATATTTA-TATAGATAATATTTTATT-AA
*
26256530 TTTAATATTTATCTAGATAATATTTTATTAA
1 TTTAATATTTATATAGATAATATTTTATTAA
26256561 TTTAATATT
1 TTTAATATT
26256570 AATGTGATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
29 8 0.14
30 16 0.28
31 26 0.45
32 8 0.14
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (31 bp):
TTTAATATTTATATAGATAATATTTTATTAA
Found at i:26256519 original size:61 final size:61
Alignment explanation
Indices: 26256444--26256572 Score: 204
Period size: 61 Copynumber: 2.1 Consensus size: 61
26256434 TTTATCTATT
* * * *
26256444 TATTAATATGAGATATTAACTTTACTTTAATATTTATATAGATAATATTTTATTAATTTAA
1 TATTAATATAAGATATTAAATTAAATTTAATATTTATATAGATAATATTTTATTAATTTAA
* *
26256505 TATTATTATAAGATATTAAATTAAATTTAATATTTATCTAGATAATATTTTATTAATTTAA
1 TATTAATATAAGATATTAAATTAAATTTAATATTTATATAGATAATATTTTATTAATTTAA
26256566 TATTAAT
1 TATTAAT
26256573 GTGATTAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (61 bp):
TATTAATATAAGATATTAAATTAAATTTAATATTTATATAGATAATATTTTATTAATTTAA
Found at i:26262016 original size:48 final size:48
Alignment explanation
Indices: 26261955--26262225 Score: 166
Period size: 48 Copynumber: 5.7 Consensus size: 48
26261945 GATATGTGCG
*
26261955 CTAGTGTAGGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCATGATATGAGAGC
* * ** * * *
26262004 CT-GTGTAAGACCATGTTTGGAACATGGCATCGGTAAGGTAATGAGAGG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGAT-ATGAGAGC
* * *
26262052 C-AGTGTAAGACCATGTCAGGAACATGGCATCTG-CATTGATAT--GTGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCA-TGATATGAGAGC
* * * * * *
26262098 ACTAGTGTAAGACCATGTCTGAGACAT-GCATTGGCCTTAAGACGAGAG-
1 -CTAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCATGATATGAGAGC
* * * * * *
26262146 CTAGTGTAAG-TCATGTCTGGGATATGGCATCAGTC-TCGACAAGTGAG-
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCAT-GATATGAGAGC
* * *
26262193 CTAGTGTAAGACCATGTTTGGAACGTGGCATCG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCG
26262226 GTAATTCACC
Statistics
Matches: 170, Mismatches: 38, Indels: 30
0.71 0.16 0.13
Matches are distributed among these distances:
46 16 0.09
47 43 0.25
48 104 0.61
49 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGATATGAGAGC
Found at i:26264252 original size:16 final size:15
Alignment explanation
Indices: 26264231--26264261 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
26264221 AGAAATGTGT
26264231 ATTAATTTATAATTTA
1 ATTAATTT-TAATTTA
26264247 ATTAATTTTAATTTA
1 ATTAATTTTAATTTA
26264262 TTCCCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTAATTTTAATTTA
Found at i:26274850 original size:5 final size:5
Alignment explanation
Indices: 26274840--26274880 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
26274830 TCGTGATTAA
26274840 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
26274881 GAGCACATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:26281446 original size:14 final size:13
Alignment explanation
Indices: 26281426--26281462 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
26281416 AATACTTGAT
26281426 TTGTTCTTAATTA
1 TTGTTCTTAATTA
26281439 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
26281453 TTGTT-TTAAT
1 TTGTTCTTAAT
26281463 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:26283527 original size:15 final size:16
Alignment explanation
Indices: 26283507--26283537 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26283497 AAATCCTAAG
26283507 ATAATAATAAT-TTAA
1 ATAATAATAATATTAA
26283522 ATAATAATAATATTAA
1 ATAATAATAATATTAA
26283538 TTATTGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAATAATAATATTAA
Found at i:26285923 original size:47 final size:47
Alignment explanation
Indices: 26285860--26286062 Score: 302
Period size: 47 Copynumber: 4.3 Consensus size: 47
26285850 CCCTTCGGGA
* * *
26285860 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
26285907 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
26285954 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
26286001 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
26286048 CTTATCACATATATA
1 CTTATCACATATATA
26286063 TACACTTTCA
Statistics
Matches: 142, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 141 0.99
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:26287225 original size:95 final size:95
Alignment explanation
Indices: 26287062--26287251 Score: 380
Period size: 95 Copynumber: 2.0 Consensus size: 95
26287052 TTTTGCCCAT
26287062 CATCCCTTGTCATGGCCGGCCACTAGTACTTAAATGGGGGGAAATTGACATGCAAGTCCACCCCT
1 CATCCCTTGTCATGGCCGGCCACTAGTACTTAAATGGGGGGAAATTGACATGCAAGTCCACCCCT
26287127 TTGATTACATGCACTATTAGGCCACTTGCA
66 TTGATTACATGCACTATTAGGCCACTTGCA
26287157 CATCCCTTGTCATGGCCGGCCACTAGTACTTAAATGGGGGGAAATTGACATGCAAGTCCACCCCT
1 CATCCCTTGTCATGGCCGGCCACTAGTACTTAAATGGGGGGAAATTGACATGCAAGTCCACCCCT
26287222 TTGATTACATGCACTATTAGGCCACTTGCA
66 TTGATTACATGCACTATTAGGCCACTTGCA
26287252 TTTGCCTAGC
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (95 bp):
CATCCCTTGTCATGGCCGGCCACTAGTACTTAAATGGGGGGAAATTGACATGCAAGTCCACCCCT
TTGATTACATGCACTATTAGGCCACTTGCA
Found at i:26297687 original size:48 final size:48
Alignment explanation
Indices: 26297629--26297900 Score: 295
Period size: 48 Copynumber: 5.7 Consensus size: 48
26297619 TATGTGCGCT
* * * *
26297629 AGTGTAAGACCATGTATGGGACACGGCATTGGCCATGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCATGATATGAGAGCC
* * *
26297677 AGTGTAAGACCATGTTTGGAACATGGCATCGG-CAAGGTAATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCATGAT-ATGAGAGCC
* * * * * *
26297725 AGTGTAAGACC-TTTCTGGAACATGGCATCTG-TATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCA-TGATATGAGAGCC
*
26297772 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCCATGA-TATGAGAGCC
* * *
26297820 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCAT-GATATGAGAGCC
*
26297868 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGC
26297901 AATTCACCCT
Statistics
Matches: 188, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
47 42 0.22
48 142 0.76
49 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCATGATATGAGAGCC
Found at i:26297874 original size:143 final size:144
Alignment explanation
Indices: 26297616--26297897 Score: 410
Period size: 143 Copynumber: 2.0 Consensus size: 144
26297606 GACATTTGGG
* * *
26297616 TGATATGTGCGCTAGTGTAAGACCATGTATGGGACACGGCATTGGCCATGATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTATAGGACACGGCATCGGCCATCATATGAGAGCCAGTG
* *
26297681 TAAGACCATGTTTGGAACATGGCATCGGCAAGGTAATGAGAGCCAGTGTAAGACC-T-TTCTGGA
66 TAAGACCATGTCTGGAACATGGCATCGGCAACGTAATGAGAGCCAGTGTAAGACCATGTT-TGGA
26297744 ACATGGCATCTGTAT
130 ACATGGCATCTGTAT
* *
26297759 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CATTATGAGAGCCAGT
1 TGATATGTGCGCTAGTGTAAGACCATGTATAGGACACGGCATCGGCCATCA-TATGAGAGCCAGT
* ** *
26297823 GTAAGACCATGTCTGGGACATGGCATCGGCCTCG-ACATGTGAGCCAGTGTAAGACCATGTTTGG
65 GTAAGACCATGTCTGGAACATGGCATCGGCAACGTA-ATGAGAGCCAGTGTAAGACCATGTTTGG
26297887 AACATGGCATC
129 AACATGGCATC
26297898 GGCAATTCAC
Statistics
Matches: 124, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
142 2 0.02
143 105 0.85
144 15 0.12
145 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTATAGGACACGGCATCGGCCATCATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCGGCAACGTAATGAGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCTGTAT
Found at i:26298684 original size:45 final size:45
Alignment explanation
Indices: 26298620--26298709 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
26298610 AAGTAAGGGT
* *
26298620 GGCAAAAAGGCTTGGTACATAGCCCTATTTTTGTCCACATGGGCA
1 GGCAAAAAGGCTTCGTACATAGCCCTATTTTTGTCCACATAGGCA
*
26298665 GGCAAAAAGGCTTCGTACATAGCCCTATTTTTTTCCACATAGGCA
1 GGCAAAAAGGCTTCGTACATAGCCCTATTTTTGTCCACATAGGCA
26298710 AACACACGGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (45 bp):
GGCAAAAAGGCTTCGTACATAGCCCTATTTTTGTCCACATAGGCA
Found at i:26303427 original size:19 final size:21
Alignment explanation
Indices: 26303405--26303445 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26303395 CATACCAGTC
26303405 AAACATA-TCAA-CCATATAT
1 AAACATACTCAAGCCATATAT
26303424 AAACATACCTCAAGCCATATAT
1 AAACATA-CTCAAGCCATATAT
26303446 TACAAAGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
AAACATACTCAAGCCATATAT
Found at i:26305431 original size:7 final size:7
Alignment explanation
Indices: 26305419--26305458 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
26305409 ACCCAACAAT
26305419 AACCTTA
1 AACCTTA
26305426 AACCTTA
1 AACCTTA
26305433 AACCTTA
1 AACCTTA
*
26305440 AACCCTAA
1 AA-CCTTA
*
26305448 AACCCTA
1 AACCTTA
26305455 AACC
1 AACC
26305459 CTTAGAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCTTA
Found at i:26305456 original size:15 final size:15
Alignment explanation
Indices: 26305419--26305460 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
26305409 ACCCAACAAT
*
26305419 AACCTTAAA-CCTTA
1 AACCTTAAACCCTAA
26305433 AACCTTAAACCCTAA
1 AACCTTAAACCCTAA
*
26305448 AACCCTAAACCCT
1 AACCTTAAACCCT
26305461 TAGAATAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCTTAAACCCTAA
Found at i:26320531 original size:6 final size:6
Alignment explanation
Indices: 26320522--26320612 Score: 80
Period size: 6 Copynumber: 15.5 Consensus size: 6
26320512 AATAAAATTG
* * *
26320522 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA AAAT-A AAAT--
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* * * * *
26320567 AAATAA CAATAA CAATAA CAATAA CAATAA CAATAA ATAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA AAA
26320613 AATAGGAGGA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
4 4 0.05
5 5 0.07
6 60 0.80
7 6 0.08
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:26320537 original size:12 final size:11
Alignment explanation
Indices: 26320502--26320611 Score: 80
Period size: 12 Copynumber: 9.4 Consensus size: 11
26320492 TATGTCTTTC
26320502 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
26320515 AAAATTGAAAT
1 AAAATAAAAAT
26320526 GAAAATAAAAAT
1 -AAAATAAAAAT
*
26320538 CAAAAGAAAAAT
1 -AAAATAAAAAT
26320550 AAAAATAAAAAT
1 -AAAATAAAAAT
26320562 AAAAT--AAAT
1 AAAATAAAAAT
*
26320571 AACAATAACAAT
1 AA-AATAAAAAT
*
26320583 AACAATAACAAT
1 AA-AATAAAAAT
26320595 AACAATAAATAAT
1 AA-AATAAA-AAT
26320608 AAAA
1 AAAA
26320612 AAATAGGAGG
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
9 6 0.07
10 3 0.04
11 8 0.10
12 55 0.67
13 10 0.12
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26320546 original size:17 final size:17
Alignment explanation
Indices: 26320512--26320569 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
26320502 AAAATAAAAT
* * *
26320512 AATAAAATTGAAATGAA
1 AATAAAAATAAAAAGAA
*
26320529 AATAAAAATCAAAAGAAA
1 AATAAAAATAAAAAG-AA
*
26320547 AATAAAAATAAAAATAA
1 AATAAAAATAAAAAGAA
26320564 AATAAA
1 AATAAA
26320570 TAACAATAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 20 0.57
18 15 0.43
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAAAGAA
Found at i:26320548 original size:18 final size:17
Alignment explanation
Indices: 26320502--26320612 Score: 84
Period size: 18 Copynumber: 6.2 Consensus size: 17
26320492 TATGTCTTTC
*
26320502 AAAATAAAATAATAAAATT
1 AAAATAAAAT-A-AAAATA
*
26320521 GAAATGAAAATAAAAATCA
1 AAAAT-AAAATAAAAAT-A
26320540 AAAGA-AAAATAAAAATA
1 AAA-ATAAAATAAAAATA
26320557 AAAATAAAAT--AAATA
1 AAAATAAAATAAAAATA
* *
26320572 ACAATAACAATAACAATA
1 AAAATAA-AATAAAAATA
*
26320590 ACAATAACAATAAATAATA
1 AAAATAA-AATAAA-AATA
26320609 AAAA
1 AAAA
26320613 AATAGGAGGA
Statistics
Matches: 77, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
15 11 0.14
16 4 0.05
17 9 0.12
18 33 0.43
19 14 0.18
20 6 0.08
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:26325984 original size:13 final size:13
Alignment explanation
Indices: 26325962--26325994 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26325952 AAGGATTTGT
26325962 TTAT-TAAACTAA
1 TTATCTAAACTAA
26325974 TTATCTAAACTAA
1 TTATCTAAACTAA
*
26325987 TTAACTAA
1 TTATCTAA
26325995 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:26327740 original size:26 final size:26
Alignment explanation
Indices: 26327711--26327767 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
26327701 AGTTTATCAT
26327711 ATTAGTCAATATAAGTTGAAAATTTA
1 ATTAGTCAATATAAGTTGAAAATTTA
26327737 ATTAGTCAATATAAGTTGAAAATTTA
1 ATTAGTCAATATAAGTTGAAAATTTA
26327763 ATTAG
1 ATTAG
26327768 CAGCTACTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.39
Consensus pattern (26 bp):
ATTAGTCAATATAAGTTGAAAATTTA
Found at i:26329101 original size:7 final size:6
Alignment explanation
Indices: 26329082--26329111 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26329072 AGGACTCTGA
*
26329082 TTATTT TTATTT TTACTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT
26329112 AAACTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:26329117 original size:18 final size:18
Alignment explanation
Indices: 26329082--26329118 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26329072 AGGACTCTGA
**
26329082 TTATTTTTATTTTTACTT
1 TTATTTTTATTTAAACTT
26329100 TTATTTTTATTTAAACTT
1 TTATTTTTATTTAAACTT
26329118 T
1 T
26329119 ATTGTGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (18 bp):
TTATTTTTATTTAAACTT
Found at i:26337644 original size:10 final size:10
Alignment explanation
Indices: 26337629--26337668 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
26337619 ATGAACATGT
26337629 TTAATTTTAA
1 TTAATTTTAA
26337639 TTAATTTTATAA
1 TTAA-TTT-TAA
*
26337651 TTAATTTTGA
1 TTAATTTTAA
26337661 TTAATTTT
1 TTAATTTT
26337669 GGTTATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 14 0.52
11 6 0.22
12 7 0.26
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:26337669 original size:10 final size:10
Alignment explanation
Indices: 26337629--26337680 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
26337619 ATGAACATGT
*
26337629 TTAATTTTAA
1 TTAATTTTGA
*
26337639 TTAATTTTATAA
1 TTAA-TTT-TGA
26337651 TTAATTTTGA
1 TTAATTTTGA
*
26337661 TTAATTTTGG
1 TTAATTTTGA
*
26337671 TTATTTTTGA
1 TTAATTTTGA
26337681 CAGAATTGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 23 0.64
11 6 0.17
12 7 0.19
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (10 bp):
TTAATTTTGA
Found at i:26342685 original size:15 final size:15
Alignment explanation
Indices: 26342665--26342698 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
26342655 AGCTTGCATG
26342665 AGGAAAGACATAATA
1 AGGAAAGACATAATA
26342680 AGGAAAGACATAATA
1 AGGAAAGACATAATA
26342695 AGGA
1 AGGA
26342699 GAGTGATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.59, C:0.06, G:0.24, T:0.12
Consensus pattern (15 bp):
AGGAAAGACATAATA
Found at i:26351940 original size:31 final size:31
Alignment explanation
Indices: 26351905--26351964 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
26351895 GCCCAAAAGG
26351905 CCCACACGACCAAAAAAGCTAGCCCGTGTAA
1 CCCACACGACCAAAAAAGCTAGCCCGTGTAA
* ** *
26351936 CCCACACGGCCCCAAAAGCTAGCTCGTGT
1 CCCACACGACCAAAAAAGCTAGCCCGTGT
26351965 GGTCTACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.32, C:0.38, G:0.18, T:0.12
Consensus pattern (31 bp):
CCCACACGACCAAAAAAGCTAGCCCGTGTAA
Found at i:26359675 original size:29 final size:29
Alignment explanation
Indices: 26359625--26359700 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
26359615 TTGAAAAAAA
* *
26359625 AATA-TTTTTTATAGTTTTAAA-TACTTTT
1 AATATTTTTTTA-ATTTTTAAATTAATTTT
26359653 AATATTTTTTTAATTTTTAAAATTAATTTT
1 AATATTTTTTTAATTTTT-AAATTAATTTT
26359683 -ATAATTTTTTTGAATTTT
1 AAT-ATTTTTTT-AATTTT
26359701 GAATTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 9 0.22
29 12 0.29
30 14 0.34
31 6 0.15
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (29 bp):
AATATTTTTTTAATTTTTAAATTAATTTT
Found at i:26359718 original size:30 final size:31
Alignment explanation
Indices: 26359640--26359718 Score: 72
Period size: 31 Copynumber: 2.5 Consensus size: 31
26359630 TTTTTATAGT
*
26359640 TTTAAATACTTTTAATATTTTTTTAATTTTTAAA
1 TTTAAA-A-TTTTAAT-TTTTTTGAATTTTTAAA
* * *
26359674 ATT-AATTTTATAATTTTTTTGAA-TTTTGAA
1 TTTAAAATTT-TAATTTTTTTGAATTTTTAAA
26359704 TTTAAAATTTTAATT
1 TTTAAAATTTTAATT
26359719 AATAATTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
30 13 0.35
31 16 0.43
32 4 0.11
33 2 0.05
34 2 0.05
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAAAATTTTAATTTTTTTGAATTTTTAAA
Found at i:26359725 original size:13 final size:13
Alignment explanation
Indices: 26359695--26359734 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
26359685 AATTTTTTTG
26359695 AATTTTGAATTTAA-
1 AATTTT-AA-TTAAT
26359709 AATTTTAATTAAT
1 AATTTTAATTAAT
26359722 AATTTTAATTAAT
1 AATTTTAATTAAT
26359735 CATTGATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 4 0.16
13 15 0.60
14 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
AATTTTAATTAAT
Found at i:26360093 original size:13 final size:13
Alignment explanation
Indices: 26360075--26360099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26360065 AATGGAGAAC
26360075 TAAAATCAACCAT
1 TAAAATCAACCAT
26360088 TAAAATCAACCA
1 TAAAATCAACCA
26360100 AAAAATTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAATCAACCAT
Found at i:26360198 original size:31 final size:31
Alignment explanation
Indices: 26360156--26360214 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
26360146 TTTTTTATAC
26360156 AAATAAAGAG-A-AAAAATATGAAAATATGAA
1 AAATAAAGAGAATAAAAATA-GAAAATATGAA
26360186 AAATCAAAGAGAATAAAAATAGAAAATAT
1 AAAT-AAAGAGAATAAAAATAGAAAATAT
26360215 AATTTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.15
31 6 0.23
32 9 0.35
33 7 0.27
ACGTcount: A:0.69, C:0.02, G:0.12, T:0.17
Consensus pattern (31 bp):
AAATAAAGAGAATAAAAATAGAAAATATGAA
Found at i:26368580 original size:26 final size:26
Alignment explanation
Indices: 26368543--26368626 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
26368533 TGATACAAAT
* * *
26368543 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
26368569 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
26368595 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
26368621 TGATAA
1 TGATAA
26368627 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:26378312 original size:40 final size:37
Alignment explanation
Indices: 26378237--26378371 Score: 143
Period size: 35 Copynumber: 3.7 Consensus size: 37
26378227 CATGGCAAAG
*
26378237 TGTGAAATGTAGGTATGGTA--TCATCCATACCAAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTAAGT
26378272 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACTAAGT
** * * *
26378312 TAAGAAATGTAGGCATGGCATTTC--CCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTAAGT
* *
26378347 TGTAAAATCTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
26378372 ATGAAGAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
35 48 0.59
38 2 0.02
39 2 0.02
40 30 0.37
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACTAAGT
Found at i:26381110 original size:13 final size:13
Alignment explanation
Indices: 26381092--26381117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26381082 CGTGTTTCCA
26381092 AAAACCATTTGTT
1 AAAACCATTTGTT
26381105 AAAACCATTTGTT
1 AAAACCATTTGTT
26381118 TCCATAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:26385822 original size:20 final size:21
Alignment explanation
Indices: 26385788--26385841 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
26385778 TGATGATATT
*
26385788 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATAAGATA
26385809 -TATATTATTTTAATAAGATA
1 TTATATTATTTTAATAAGATA
*
26385829 TTTTATTATTTTA
1 TTATATTATTTTA
26385842 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATAAGATA
Found at i:26385847 original size:11 final size:11
Alignment explanation
Indices: 26385831--26385869 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
26385821 ATAAGATATT
*
26385831 TTATTATTTTA
1 TTATTATTTCA
26385842 TTATTATTTCA
1 TTATTATTTCA
26385853 TTATTATTTCA
1 TTATTATTTCA
26385864 TTATTA
1 TTATTA
26385870 ATTATTTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATTTCA
Found at i:26388062 original size:46 final size:46
Alignment explanation
Indices: 26388022--26388188 Score: 237
Period size: 46 Copynumber: 3.6 Consensus size: 46
26388012 ATGAATTGTG
* *
26388022 TAAGACCATGGTTGAAAGATACCATAGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
*
26388068 TAAGACCATGGTTGAAAGATACCATGGCGACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
* * *
26388114 TAAGACCATGGTTGAAAGATAACATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAATGAA
* * *
26388160 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
26388189 TCATGTCAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 108 0.99
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
Found at i:26394375 original size:28 final size:28
Alignment explanation
Indices: 26394339--26394396 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
26394329 TCTTTTGAAG
26394339 ATAGAATTTCTTAATCTATTGCATGATA
1 ATAGAATTTCTTAATCTATTGCATGATA
*
26394367 ATAGAATTTCTTGATCTATTGCATGATA
1 ATAGAATTTCTTAATCTATTGCATGATA
26394395 AT
1 AT
26394397 GCTTACCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (28 bp):
ATAGAATTTCTTAATCTATTGCATGATA
Found at i:26396426 original size:45 final size:46
Alignment explanation
Indices: 26396375--26396464 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 46
26396365 TTTCATTTTT
*
26396375 GAGAAAACCACATTCATTTCCAAATGATTT-TATTTCTCTATTTCG
1 GAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCTATTTCG
* ** * *
26396420 GAGAAAACCATAATCATTTCTGAATGTTTTCTATTTCTTTATTTC
1 GAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCTATTTC
26396465 TATTCATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
45 25 0.66
46 13 0.34
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (46 bp):
GAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCTATTTCG
Found at i:26401783 original size:15 final size:14
Alignment explanation
Indices: 26401763--26401792 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
26401753 AACATGTCCC
26401763 TAAACCCTAAAACCT
1 TAAACCCT-AAACCT
26401778 TAAACCCTAAACCT
1 TAAACCCTAAACCT
26401792 T
1 T
26401793 TATCTCTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:26409341 original size:176 final size:174
Alignment explanation
Indices: 26409104--26409643 Score: 805
Period size: 176 Copynumber: 3.1 Consensus size: 174
26409094 TGAAAGCCAA
* * * * * *
26409104 ATCTGCTGTGTCTTCAATTTGCTCTTTGTGAACACAAGGATG-CCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTT
* *
26409168 CAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAG
66 CAGTATAAA-CACCTGAAGGTTAGACCTGCTATGTA-CTGCTCTCCGTCGAAATGGAGATGCCAG
* * * * *
26409232 ATCTGTTATTTTGGATCTGTTTTGGTGTGAGAACATCCAAAAGTCAA
129 ATCTGTTATCTTGGATCTGCTTTGATGTGA-AACATCTAAAAGTCAG
* * * *
26409279 ATCTACTATGTTTTTGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTAGATCTGCTT
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTT
* *
26409344 CAGTATAAACACCTGAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGAGATGCGAGA
66 CAGTATAAACACCTGAAGGTTAGACCTGCTATGTA-CTGCTCTCCGTCGAAATGGAGATGCCAGA
26409409 TCTGTTATCTTGGATCTGCTTTGATGTGAAAGCATCTAAAAGTCAG
130 TCTGTTATCTTGGATCTGCTTTGATGTGAAA-CATCTAAAAGTCAG
26409455 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTT
* *
26409520 CAGTATAAACACCTGAAGGTTAGACCTGCTATGTACTTGCTCTCCGTCGAAATAGAGATGCCAAA
66 CAGTATAAACACCTGAAGGTTAGACCTGCTATGTAC-TGCTCTCCGTCGAAATGGAGATGCCAGA
*
26409585 TCTGTTATCTTGGGTCTGCTTTGATGTGAAAACATCTAAAAGTCAG
130 TCTGTTATCTTGGATCTGCTTTGATGTG-AAACATCTAAAAGTCAG
26409631 ATCTGCTATGTCT
1 ATCTGCTATGTCT
26409644 GCAATTTAAT
Statistics
Matches: 331, Mismatches: 29, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
175 36 0.11
176 289 0.87
177 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (174 bp):
ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTT
CAGTATAAACACCTGAAGGTTAGACCTGCTATGTACTGCTCTCCGTCGAAATGGAGATGCCAGAT
CTGTTATCTTGGATCTGCTTTGATGTGAAACATCTAAAAGTCAG
Found at i:26409618 original size:88 final size:88
Alignment explanation
Indices: 26409350--26409641 Score: 233
Period size: 88 Copynumber: 3.3 Consensus size: 88
26409340 GCTTCAGTAT
* * * * * * * *
26409350 AAACACCTGAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGAGATGCGAGATCTGTT
1 AAACACCTAAAAGTCAGACCTGCTATGTACTTGCTCTCCGTCGAAATAGAGATGCCAAATCTGTT
26409415 ATCTTGGATCTGCTTTGATGTGA
66 ATCTTGGATCTGCTTTGATGTGA
* * * * * * * *
26409438 AAGCATCTAAAAGTCAGATCTGCTATGT-CTTCGATTTGTTCC-TTGTAAACACAAGAATGCCCA
1 AAACACCTAAAAGTCAGACCTGCTATGTACTT-G--CT-CTCCGTCG-AAATA-GAG-ATG-CCA
*
26409501 AATC----ATCTTGGATCTGC-TTCA-GT-A
58 AATCTGTTATCTTGGATCTGCTTTGATGTGA
* * *
26409525 TAAACACCTGAAGGTTAGACCTGCTATGTACTTGCTCTCCGTCGAAATAGAGATGCCAAATCTGT
1 -AAACACCTAAAAGTCAGACCTGCTATGTACTTGCTCTCCGTCGAAATAGAGATGCCAAATCTGT
*
26409590 TATCTTGGGTCTGCTTTGATGTGA
65 TATCTTGGATCTGCTTTGATGTGA
* *
26409614 AAACATCTAAAAGTCAGATCTGCTATGT
1 AAACACCTAAAAGTCAGACCTGCTATGT
26409642 CTGCAATTTA
Statistics
Matches: 151, Mismatches: 35, Indels: 36
0.68 0.16 0.16
Matches are distributed among these distances:
82 7 0.05
83 3 0.02
84 2 0.01
85 7 0.05
86 15 0.10
87 6 0.04
88 72 0.48
89 7 0.05
90 16 0.11
91 6 0.04
92 2 0.01
93 3 0.02
94 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (88 bp):
AAACACCTAAAAGTCAGACCTGCTATGTACTTGCTCTCCGTCGAAATAGAGATGCCAAATCTGTT
ATCTTGGATCTGCTTTGATGTGA
Found at i:26416469 original size:40 final size:40
Alignment explanation
Indices: 26416437--26416788 Score: 508
Period size: 40 Copynumber: 8.8 Consensus size: 40
26416427 CCAGCATGAT
* * * *
26416437 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
26416477 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
*
26416517 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26416557 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26416597 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26416637 TGCTCTTCGGGACTTAGACCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
26416677 TGCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
26416717 TGCTCTTCGGGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** ** *
26416757 TGCTCTTCAAGACTTTTCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
26416789 CTCAATTCTC
Statistics
Matches: 283, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 280 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:26438530 original size:10 final size:10
Alignment explanation
Indices: 26438517--26438553 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
26438507 TATATTTTTT
26438517 GATATATATG
1 GATATATATG
26438527 GATATATAT-
1 GATATATATG
26438536 -ATATATATG
1 GATATATATG
26438545 GATATATAT
1 GATATATAT
26438554 AGTTATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.32
10 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (10 bp):
GATATATATG
Found at i:26438541 original size:18 final size:18
Alignment explanation
Indices: 26438518--26438554 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26438508 ATATTTTTTG
26438518 ATATATATGGATATATAT
1 ATATATATGGATATATAT
26438536 ATATATATGGATATATAT
1 ATATATATGGATATATAT
26438554 A
1 A
26438555 GTTATTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
ATATATATGGATATATAT
Found at i:26438649 original size:27 final size:27
Alignment explanation
Indices: 26438619--26438670 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
26438609 AATAAACAAA
* *
26438619 TAAATAAGTAAGTAATTATTTATTTGT
1 TAAATAAATAAGTAATTAATTATTTGT
**
26438646 TAAATAAATTGGTAATTAATTATTT
1 TAAATAAATAAGTAATTAATTATTT
26438671 AAATGTAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (27 bp):
TAAATAAATAAGTAATTAATTATTTGT
Found at i:26439567 original size:11 final size:11
Alignment explanation
Indices: 26439551--26439577 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26439541 TTCGTTTAAT
26439551 TTACTTTCATA
1 TTACTTTCATA
26439562 TTACTTTCATA
1 TTACTTTCATA
26439573 TTACT
1 TTACT
26439578 GGTTGAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.56
Consensus pattern (11 bp):
TTACTTTCATA
Found at i:26439770 original size:38 final size:38
Alignment explanation
Indices: 26439738--26439815 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
26439728 GAATTTGTTA
*
26439738 TGCCTAGTGTGCATTATTTGCGTAATGTGAATTCAGTT
1 TGCCTAGTATGCATTATTTGCGTAATGTGAATTCAGTT
*
26439776 TGCTTAGTATGCATTATTTGCGTAATGTGAATTCAGTT
1 TGCCTAGTATGCATTATTTGCGTAATGTGAATTCAGTT
26439814 TG
1 TG
26439816 TAGTTTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.22, C:0.12, G:0.23, T:0.44
Consensus pattern (38 bp):
TGCCTAGTATGCATTATTTGCGTAATGTGAATTCAGTT
Found at i:26440767 original size:16 final size:16
Alignment explanation
Indices: 26440746--26440955 Score: 84
Period size: 16 Copynumber: 12.7 Consensus size: 16
26440736 TTTTTTTTCC
26440746 CTTACATAATACATAA
1 CTTACATAATACATAA
26440762 CTTACAT--T-CATAA
1 CTTACATAATACATAA
26440775 CTTACATAA-ACTTATATGTTA
1 CTTACATAATAC--ATA----A
26440796 CCTTACATAATACATAA
1 -CTTACATAATACATAA
* *
26440813 CTTATATAA-A-AT-T
1 CTTACATAATACATAA
* *
26440826 TTTATATAAACTTACATAA
1 CTTACAT-AA--TACATAA
26440845 --TACATAGCATACATAA
1 CTTACATA--ATACATAA
* *
26440861 CTCACATAATACAAAA
1 CTTACATAATACATAA
* *
26440877 CTTACATAACTTAAATAT
1 CTTACATAA--TACATAA
26440895 CTTACA-ACACTTACATAA
1 CTTACATA-A--TACATAA
*
26440913 CCTACATAATACATAA
1 CTTACATAATACATAA
26440929 CTTACATAACTTACATAA
1 CTTACATAA--TACATAA
26440947 --TACATAATA
1 CTTACATAATA
26440956 ACTTACAACT
Statistics
Matches: 152, Mismatches: 15, Indels: 56
0.68 0.07 0.25
Matches are distributed among these distances:
13 18 0.12
14 7 0.05
15 2 0.01
16 60 0.39
17 10 0.07
18 39 0.26
19 1 0.01
21 4 0.03
22 9 0.06
23 2 0.01
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (16 bp):
CTTACATAATACATAA
Found at i:26440775 original size:13 final size:13
Alignment explanation
Indices: 26440757--26440781 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26440747 TTACATAATA
26440757 CATAACTTACATT
1 CATAACTTACATT
26440770 CATAACTTACAT
1 CATAACTTACAT
26440782 AAACTTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
CATAACTTACATT
Found at i:26440814 original size:38 final size:38
Alignment explanation
Indices: 26440770--26440941 Score: 104
Period size: 39 Copynumber: 4.5 Consensus size: 38
26440760 AACTTACATT
* * *
26440770 CATAACTTACATAAACTTATATGTTACCTTACATAATA
1 CATAACTTACATAAACTTATATATAAACTTACATAATA
* * *
26440808 CATAACTTATATAAAATTTTTATATAAACTTACATAATA
1 CATAACTTACAT-AAACTTATATATAAACTTACATAATA
* * * *
26440847 CATAGCATACAT-AACTCACATAATACAAAACTTACATAACTTA
1 CATAACTTACATAAACT--TAT-ATA-TAAACTTACATAA--TA
* * * * *
26440890 AATATCTTACA-ACAC-T-TACAT-AACCTACATAATA
1 CATAACTTACATAAACTTATATATAAACTTACATAATA
26440924 CATAACTTACAT-AACTTA
1 CATAACTTACATAAACTTA
26440942 CATAATACAT
Statistics
Matches: 99, Mismatches: 24, Indels: 24
0.67 0.16 0.16
Matches are distributed among these distances:
34 13 0.13
35 1 0.01
36 10 0.10
37 3 0.03
38 13 0.13
39 32 0.32
40 3 0.03
41 12 0.12
43 12 0.12
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (38 bp):
CATAACTTACATAAACTTATATATAAACTTACATAATA
Found at i:26440867 original size:9 final size:9
Alignment explanation
Indices: 26440834--26441146 Score: 195
Period size: 9 Copynumber: 36.8 Consensus size: 9
26440824 TTTTTATATA
26440834 AACTTACAT
1 AACTTACAT
26440843 AA--TACAT
1 AACTTACAT
* *
26440850 AGCATACAT
1 AACTTACAT
*
26440859 AACTCACAT
1 AACTTACAT
*
26440868 AA--TACAA
1 AACTTACAT
26440875 AACTTACAT
1 AACTTACAT
*
26440884 AACTTAAAT
1 AACTTACAT
*
26440893 ATCTTACA-
1 AACTTACAT
26440901 ACACTTACAT
1 A-ACTTACAT
*
26440911 AACCTACAT
1 AACTTACAT
26440920 AA--TACAT
1 AACTTACAT
26440927 AACTTACAT
1 AACTTACAT
26440936 AACTTACAT
1 AACTTACAT
*
26440945 AATACATA-AT
1 -A-ACTTACAT
26440955 AACTTAC--
1 AACTTACAT
26440962 AACTTAC--
1 AACTTACAT
26440969 AACTTACAT
1 AACTTACAT
*
26440978 AACATACATT
1 AACTTACA-T
***
26440988 AA-TTTGGT
1 AACTTACAT
26440996 AACTTACAT
1 AACTTACAT
* *
26441005 AAGTTACAC
1 AACTTACAT
26441014 AA--TACAT
1 AACTTACAT
26441021 AACTTAC--
1 AACTTACAT
26441028 AACTTACAT
1 AACTTACAT
*
26441037 AACATACAT
1 AACTTACAT
* **
26441046 TACTTTGAT
1 AACTTACAT
26441055 AACTTACAT
1 AACTTACAT
*
26441064 AAGTTACAT
1 AACTTACAT
*
26441073 AA--TACAC
1 AACTTACAT
26441080 AACTTACAT
1 AACTTACAT
* *
26441089 AGCTTACTT
1 AACTTACAT
26441098 AA--TACAT
1 AACTTACAT
*
26441105 GACTTACAT
1 AACTTACAT
26441114 AACTT--AT
1 AACTTACAT
*
26441121 ACACGTACAT
1 A-ACTTACAT
26441131 AACTTACAT
1 AACTTACAT
*
26441140 AATTTAC
1 AACTTAC
26441147 TTAATACATA
Statistics
Matches: 233, Mismatches: 45, Indels: 52
0.71 0.14 0.16
Matches are distributed among these distances:
7 59 0.25
8 11 0.05
9 149 0.64
10 10 0.04
11 4 0.02
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:26440951 original size:25 final size:25
Alignment explanation
Indices: 26440834--26441157 Score: 198
Period size: 25 Copynumber: 12.7 Consensus size: 25
26440824 TTTTTATATA
* *
26440834 AACTTACATAATACATAGCATACAT
1 AACTTACATAATACATAACTTACAT
* *
26440859 AACTCACATAATACAAAACTTACAT
1 AACTTACATAATACATAACTTACAT
* *
26440884 AACTTAAATATCTTACA-ACACTTACAT
1 AACTTACATA--ATACATA-ACTTACAT
*
26440911 AACCTACATAATACATAACTTACAT
1 AACTTACATAATACATAACTTACAT
26440936 AACTTACATAATACATAATAACTTAC--
1 AACTTACATAATAC---ATAACTTACAT
* *
26440962 AACTTACA-ACTTACATAACATACATT
1 AACTTACATA-ATACATAACTTACA-T
*** * *
26440988 AA-TTTGGTAACTTACATAAGTTACAC
1 AACTTACATAA--TACATAACTTACAT
26441014 AA--TACATAACTTAC--AACTTACAT
1 AACTTACATAA--TACATAACTTACAT
* * **
26441037 AACATACATTACTTTGATAACTTACAT
1 AACTTACA-TA-ATACATAACTTACAT
* *
26441064 AAGTTACATAATACACAACTTACAT
1 AACTTACATAATACATAACTTACAT
* * *
26441089 AGCTTACTTAATACATGACTTACAT
1 AACTTACATAATACATAACTTACAT
* * *
26441114 AACTTATACACGTACATAACTTACAT
1 AACTTACATA-ATACATAACTTACAT
* *
26441140 AATTTACTTAATACATAA
1 AACTTACATAATACATAA
26441158 ATTATGTAAC
Statistics
Matches: 228, Mismatches: 50, Indels: 42
0.71 0.16 0.13
Matches are distributed among these distances:
23 17 0.07
25 115 0.50
26 41 0.18
27 46 0.20
28 9 0.04
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.31
Consensus pattern (25 bp):
AACTTACATAATACATAACTTACAT
Found at i:26441103 original size:59 final size:59
Alignment explanation
Indices: 26440921--26441119 Score: 226
Period size: 59 Copynumber: 3.4 Consensus size: 59
26440911 AACCTACATA
*
26440921 ATACATAACTTACATAACTTACATAA--TACATAATAACTTACAACTTACAACTTACATAAC
1 ATACATTACTTACATAACTTACATAAGTTACATAAT-AC--ACAACTTACAACTTACATAAC
* *** * *
26440981 ATACATTAATTTGGTAACTTACATAAGTTACACAATACATAACTTACAACTTACATAAC
1 ATACATTACTTACATAACTTACATAAGTTACATAATACACAACTTACAACTTACATAAC
** *
26441040 ATACATTACTTTGATAACTTACATAAGTTACATAATACACAACTTACATAGCTTAC-TTA-
1 ATACATTACTTACATAACTTACATAAGTTACATAATACACAACTTACA-A-CTTACATAAC
*
26441099 ATACATGACTTACATAACTTA
1 ATACATTACTTACATAACTTA
26441120 TACACGTACA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
59 82 0.68
60 24 0.20
61 7 0.06
62 7 0.06
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.33
Consensus pattern (59 bp):
ATACATTACTTACATAACTTACATAAGTTACATAATACACAACTTACAACTTACATAAC
Found at i:26443373 original size:21 final size:22
Alignment explanation
Indices: 26443347--26443393 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
26443337 CTCTGCTCAA
*
26443347 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
26443368 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
26443390 ACTC
1 ACTC
26443394 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:26453594 original size:18 final size:19
Alignment explanation
Indices: 26453573--26453622 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
26453563 AGCAACCGAT
26453573 GGAGGAACATGCTCGA-GA
1 GGAGGAACATGCTCGAGGA
*
26453591 GGAGGAACATGCT-TAGGA
1 GGAGGAACATGCTCGAGGA
*
26453609 AGAGGAACATGCTC
1 GGAGGAACATGCTC
26453623 TGGTGTTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.04
18 27 0.96
ACGTcount: A:0.34, C:0.16, G:0.36, T:0.14
Consensus pattern (19 bp):
GGAGGAACATGCTCGAGGA
Found at i:26454530 original size:29 final size:31
Alignment explanation
Indices: 26454473--26454539 Score: 93
Period size: 29 Copynumber: 2.2 Consensus size: 31
26454463 GATATCAGTC
* *
26454473 ATGCAGTGAACAGTATGTAATATCATTAATCG
1 ATGCAGTGAACAGTA-GTAAAATCATTAATCA
26454505 ATGCAGT-AACAGTA-TAAAATCATTAATCA
1 ATGCAGTGAACAGTAGTAAAATCATTAATCA
26454534 ATGCAG
1 ATGCAG
26454540 ATATGCAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 19 0.58
31 7 0.21
32 7 0.21
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.28
Consensus pattern (31 bp):
ATGCAGTGAACAGTAGTAAAATCATTAATCA
Found at i:26454952 original size:27 final size:27
Alignment explanation
Indices: 26454922--26455116 Score: 203
Period size: 27 Copynumber: 7.2 Consensus size: 27
26454912 TCATCTCCTA
** *
26454922 GGGGTATAACAGTCATTTTACCTTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
26454949 GGGGTATTTCAATCATTTTATCTTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
26454976 GGGCTATTTCGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
**
26455003 GGGGTATTTCAGTCATTTTACTTTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
26455030 GAGGTATTT-TGTTCATTTTACCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* * *
26455057 GGGGTATTTCGGTCATTCTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
**
26455084 GGGGTATTTTGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
26455111 GAGGTA
1 GGGGTA
26455117 GTTTGGTCAT
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 137 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:26454996 original size:54 final size:52
Alignment explanation
Indices: 26454933--26455116 Score: 233
Period size: 54 Copynumber: 3.4 Consensus size: 52
26454923 GGGTATAACA
* * *
26454933 GTCATTTTACCTTATGGGGGTATTTCAATCATTTTATCTTATGGGGCTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTA-CTTATGGGG-TATTTTG
*
26454987 GTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACTTTATGGAGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTAC-TTATGG-GGTATTTTG
* * * *
26455041 TTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTA-CTTAT-GGGGTATTTTG
*
26455095 GTCATTTTACCCTATGGAGGTA
1 GTCATTTTACCCTATGGGGGTA
26455117 GTTTGGTCAT
Statistics
Matches: 115, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
53 1 0.01
54 109 0.95
55 5 0.04
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (52 bp):
GTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACTTATGGGGTATTTTG
Found at i:26455046 original size:81 final size:81
Alignment explanation
Indices: 26454920--26455126 Score: 270
Period size: 81 Copynumber: 2.6 Consensus size: 81
26454910 TTTCATCTCC
** * ** * *
26454920 TAGGGGTATAACAGTCATTTTACCTTATGGGGGTATTTCAATCATTTTATCTTATGGGGCTATTT
1 TAGGGGTATTTCAGTCATTTTACCTTATGGAGGTATTTTGATCATTTTACCCTATGGGGCTATTT
*
26454985 CGGTCATTTTACCCTA
66 CGGTCATTCTACCCTA
* * *
26455001 TAGGGGTATTTCAGTCATTTTACTTTATGGAGGTATTTTGTTCATTTTACCCTATGGGGGTATTT
1 TAGGGGTATTTCAGTCATTTTACCTTATGGAGGTATTTTGATCATTTTACCCTATGGGGCTATTT
26455066 CGGTCATTCTACCCTA
66 CGGTCATTCTACCCTA
** * * *
26455082 TAGGGGTATTTTGGTCATTTTACCCTATGGAGGTAGTTTGGTCAT
1 TAGGGGTATTTCAGTCATTTTACCTTATGGAGGTATTTTGATCAT
26455127 AATAGTGTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (81 bp):
TAGGGGTATTTCAGTCATTTTACCTTATGGAGGTATTTTGATCATTTTACCCTATGGGGCTATTT
CGGTCATTCTACCCTA
Found at i:26463925 original size:20 final size:19
Alignment explanation
Indices: 26463862--26463926 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
26463852 AACCCAATAA
* * *
26463862 GTATCGATATTTTTAAGAGG
1 GTATCAATAATTTTAA-AAG
*
26463882 GTATCAATAATTTTATAAAA
1 GTATCAATAATTTTA-AAAG
26463902 GTATCAATAATTTTAAAATG
1 GTATCAATAATTTTAAAA-G
26463922 GTATC
1 GTATC
26463927 GATACCAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
19 3 0.08
20 34 0.89
21 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (19 bp):
GTATCAATAATTTTAAAAG
Found at i:26464169 original size:19 final size:19
Alignment explanation
Indices: 26464123--26464170 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
26464113 GTATATATTT
26464123 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
26464141 TAAATCTTATTTAGGTATA
1 TAAATTTTATTTAGGTAGA
*
26464160 TAAGTTTTATT
1 TAAATTTTATT
26464171 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:26468769 original size:19 final size:18
Alignment explanation
Indices: 26468740--26468779 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
26468730 GTATATATTT
26468740 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
26468758 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
26468777 TAA
1 TAA
26468780 GTTTTCTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:26475575 original size:33 final size:33
Alignment explanation
Indices: 26475538--26475602 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
26475528 CAATACAACC
26475538 AATGTCTCAATTTCATATATATTATCAACTTGA
1 AATGTCTCAATTTCATATATATTATCAACTTGA
26475571 AATGTCTCAATTTCATATATATTATCAACTTG
1 AATGTCTCAATTTCATATATATTATCAACTTG
26475603 TATGCATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.43
Consensus pattern (33 bp):
AATGTCTCAATTTCATATATATTATCAACTTGA
Found at i:26478684 original size:21 final size:21
Alignment explanation
Indices: 26478658--26478700 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26478648 AACGGGGTAC
*
26478658 TTACAGCTTTAGTCTGCTCGT
1 TTACAGCTTTAGGCTGCTCGT
*
26478679 TTACAGCTTTTGGCTGCTCGT
1 TTACAGCTTTAGGCTGCTCGT
26478700 T
1 T
26478701 CATGCCAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (21 bp):
TTACAGCTTTAGGCTGCTCGT
Found at i:26504097 original size:30 final size:31
Alignment explanation
Indices: 26504051--26504114 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
26504041 ATTTCTTATG
26504051 CCAATATTTCGATACCCATATCTTTGAATTT
1 CCAATATTTCGATACCCATATCTTTGAATTT
* *
26504082 CCAATATTT-GATACCCTTATCTTTGACTTT
1 CCAATATTTCGATACCCATATCTTTGAATTT
26504112 CCA
1 CCA
26504115 TAATATGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (31 bp):
CCAATATTTCGATACCCATATCTTTGAATTT
Found at i:26509272 original size:50 final size:51
Alignment explanation
Indices: 26509165--26509293 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 51
26509155 AAAGAGATCC
* * * * **
26509165 CATGTAAGACCATGTCTGGAACATGGCGTTGGTACCAAGATGAGAGGTCCT
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCT
* * * *
26509216 C-CGTAAGACCATGTTTGGGACATGGCATGGGCACCTATATGAGAACT-CT
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCT
* *
26509265 CATGTAAGACCATATCTGGGATATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
26509294 TAGCAGTACA
Statistics
Matches: 63, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.05
50 59 0.94
51 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCT
Found at i:26519899 original size:31 final size:31
Alignment explanation
Indices: 26519864--26519961 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 31
26519854 GAAGAGGGAT
26519864 ATTTGGAGAGATTTGAGGAGAGAATATTGGG
1 ATTTGGAGAGATTTGAGGAGAGAATATTGGG
* **
26519895 ATTTGGGGAGA-TTGA--AGAG-GGA-T---
1 ATTTGGAGAGATTTGAGGAGAGAATATTGGG
26519918 ATTTGGAGAGATTTGAGGAGAGAATATTGGG
1 ATTTGGAGAGATTTGAGGAGAGAATATTGGG
*
26519949 ATTTGGGGAGATT
1 ATTTGGAGAGATT
26519962 GAAGAGGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 16
0.69 0.09 0.21
Matches are distributed among these distances:
23 10 0.19
24 4 0.08
26 5 0.10
27 2 0.04
28 5 0.10
30 4 0.08
31 22 0.42
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.30
Consensus pattern (31 bp):
ATTTGGAGAGATTTGAGGAGAGAATATTGGG
Found at i:26519933 original size:54 final size:54
Alignment explanation
Indices: 26519851--26519981 Score: 262
Period size: 54 Copynumber: 2.4 Consensus size: 54
26519841 CATAGAGTGA
26519851 ATTGAAGAGGGATATTTGGAGAGATTTGAGGAGAGAATATTGGGATTTGGGGAG
1 ATTGAAGAGGGATATTTGGAGAGATTTGAGGAGAGAATATTGGGATTTGGGGAG
26519905 ATTGAAGAGGGATATTTGGAGAGATTTGAGGAGAGAATATTGGGATTTGGGGAG
1 ATTGAAGAGGGATATTTGGAGAGATTTGAGGAGAGAATATTGGGATTTGGGGAG
26519959 ATTGAAGAGGGATATTTGGAGAG
1 ATTGAAGAGGGATATTTGGAGAG
26519982 TTGGATTGAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.32, C:0.00, G:0.40, T:0.27
Consensus pattern (54 bp):
ATTGAAGAGGGATATTTGGAGAGATTTGAGGAGAGAATATTGGGATTTGGGGAG
Found at i:26521109 original size:27 final size:27
Alignment explanation
Indices: 26520579--26521098 Score: 628
Period size: 27 Copynumber: 19.3 Consensus size: 27
26520569 AGAGGCCAAT
* *
26520579 AAATGACCAAAATAACCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520606 AAATGACCAAAATACTCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
26520633 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
26520660 GAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
26520687 GAATGACCAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520714 AAAT-AGCCAAAATAACCCCATAGGGTA
1 AAATGA-CCGAAATACCCCCATAGGGTA
* *
26520741 AAATAATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
26520768 GAACGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520795 AAAGGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520822 AAATGACCAAAATACTCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
**
26520849 AAATGACTAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
26520876 AAATAACCAAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520903 GAATGACAGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
***
26520930 AAATGACCGAAATACCCCCATAAAATA
1 AAATGACCGAAATACCCCCATAGGGTA
** * *
26520957 AAATGACTAAAATACCCCCATAAGATA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26520984 AAATGACCGAAATACCCCTATAGTGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
26521011 AAATGATCGAAATAACCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
26521038 GAATGATCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
26521065 AAATAATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
26521092 AAATGAC
1 AAATGAC
26521099 TGTTATACCC
Statistics
Matches: 431, Mismatches: 60, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 429 1.00
28 1 0.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:26529986 original size:17 final size:16
Alignment explanation
Indices: 26529943--26530012 Score: 52
Period size: 17 Copynumber: 4.2 Consensus size: 16
26529933 TTTTTGGTAC
* * *
26529943 TTTAGGGTTTATGTTT
1 TTTAGAGTTTAAGGTT
*
26529959 TTTAGATTTTAAGGTT
1 TTTAGAGTTTAAGGTT
*
26529975 TTTACGAGTTT-AGGACT
1 TTTA-GAGTTTAAGG-TT
*
26529992 TTTATGGGTTTAAGGTT
1 TTTA-GAGTTTAAGGTT
26530009 TTTA
1 TTTA
26530013 ACTGTTCTGG
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
16 19 0.45
17 20 0.48
18 3 0.07
ACGTcount: A:0.20, C:0.03, G:0.23, T:0.54
Consensus pattern (16 bp):
TTTAGAGTTTAAGGTT
Found at i:26534677 original size:23 final size:23
Alignment explanation
Indices: 26534647--26534691 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26534637 TTTCTTAGTG
* *
26534647 TAGTAATTTTCGGGGTATTACAA
1 TAGTAATTTTCAGGATATTACAA
26534670 TAGTAATTTTCAGGATATTACA
1 TAGTAATTTTCAGGATATTACA
26534692 GAGCCATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCAGGATATTACAA
Found at i:26545851 original size:61 final size:59
Alignment explanation
Indices: 26545730--26545854 Score: 135
Period size: 61 Copynumber: 2.1 Consensus size: 59
26545720 TTTATAAAAA
* * * *
26545730 AATATAATATTTATCAAAATAAAATATTAGATTAAATTTAATATTAAATCTATTAAATT
1 AATATAATACTTATCAAAATAAAATATTAAATTAAATTTAATATTAAATCAATCAAATT
* * * * *
26545789 AATATAATACTTATCTACAATATAACTATTAAATTTAATTTAATATTAAGGT-AATCACATT
1 AATATAATACTTATC-AAAATA-AAATATTAAATTAAATTTAATATTAA-ATCAATCAAATT
26545850 AATAT
1 AATAT
26545855 TAAATTAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 14 0.26
60 5 0.09
61 34 0.63
62 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (59 bp):
AATATAATACTTATCAAAATAAAATATTAAATTAAATTTAATATTAAATCAATCAAATT
Found at i:26546426 original size:27 final size:25
Alignment explanation
Indices: 26546371--26546438 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
26546361 CTTCCCTAAG
* *
26546371 CCCCCAAAACTTTTTTCCTTTTGCTTT
1 CCCCCAAAAC--TTTTACTTTTCCTTT
26546398 CCCCCAAAACTTTTACTTTCTCCTGTT
1 CCCCCAAAACTTTTACTTT-TCCT-TT
*
26546425 CCCTCAAAACTTTT
1 CCCCCAAAACTTTT
26546439 TTTTCAAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 8 0.22
26 3 0.08
27 25 0.69
ACGTcount: A:0.19, C:0.35, G:0.03, T:0.43
Consensus pattern (25 bp):
CCCCCAAAACTTTTACTTTTCCTTT
Found at i:26546815 original size:19 final size:19
Alignment explanation
Indices: 26546791--26546828 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26546781 AAGTTAATAC
*
26546791 AAATTTGATTACGATGGGT
1 AAATTTGATGACGATGGGT
*
26546810 AAATTTGATGACGGTGGGT
1 AAATTTGATGACGATGGGT
26546829 GGCAGAGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (19 bp):
AAATTTGATGACGATGGGT
Found at i:26548101 original size:16 final size:16
Alignment explanation
Indices: 26548080--26548110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26548070 ACCATGAATG
*
26548080 TCACAAGTGAATTAAT
1 TCACAAATGAATTAAT
26548096 TCACAAATGAATTAA
1 TCACAAATGAATTAA
26548111 GAATTAATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (16 bp):
TCACAAATGAATTAAT
Found at i:26549132 original size:24 final size:24
Alignment explanation
Indices: 26549100--26549148 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26549090 CCTAAGAGTT
26549100 TGATTTTCTCCCTTTTACATAGTC
1 TGATTTTCTCCCTTTTACATAGTC
26549124 TGATTTTCTCCCTTTTACATAGTC
1 TGATTTTCTCCCTTTTACATAGTC
26549148 T
1 T
26549149 TCAATCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.08, T:0.51
Consensus pattern (24 bp):
TGATTTTCTCCCTTTTACATAGTC
Found at i:26549217 original size:25 final size:25
Alignment explanation
Indices: 26549174--26549241 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
26549164 AAGAAAGAAA
*
26549174 TAAAACAGCAAAA-AGAAAATCTACTC
1 TAAAA-AG-AAAAGAGAAAATCTAATC
26549200 TAAAAAGAAAAGAGAAAATCTAATC
1 TAAAAAGAAAAGAGAAAATCTAATC
*
26549225 TACAAATGAAAAG-GAAA
1 TA-AAAAGAAAAGAGAAA
26549242 GGAAAGGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 4 0.11
25 20 0.53
26 14 0.37
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.15
Consensus pattern (25 bp):
TAAAAAGAAAAGAGAAAATCTAATC
Found at i:26554910 original size:27 final size:25
Alignment explanation
Indices: 26554855--26554922 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
26554845 CTTCCCTAAG
* *
26554855 CCCCCAAAACTTTTTTCCTTTTGCTTT
1 CCCCCAAAAC--TTTTACTTTTCCTTT
26554882 CCCCCAAAACTTTTACTTTCTCCTGTT
1 CCCCCAAAACTTTTACTTT-TCCT-TT
*
26554909 CCCTCAAAACTTTT
1 CCCCCAAAACTTTT
26554923 TTTTCAAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 8 0.22
26 3 0.08
27 25 0.69
ACGTcount: A:0.19, C:0.35, G:0.03, T:0.43
Consensus pattern (25 bp):
CCCCCAAAACTTTTACTTTTCCTTT
Found at i:26555299 original size:19 final size:19
Alignment explanation
Indices: 26555275--26555312 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26555265 AAGTTAATAC
*
26555275 AAATTTGATTACGATGGGT
1 AAATTTGATGACGATGGGT
*
26555294 AAATTTGATGACGGTGGGT
1 AAATTTGATGACGATGGGT
26555313 GGCAGAGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (19 bp):
AAATTTGATGACGATGGGT
Found at i:26556585 original size:16 final size:16
Alignment explanation
Indices: 26556564--26556594 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26556554 ACCATGAATG
*
26556564 TCACAAGTGAATTAAT
1 TCACAAATGAATTAAT
26556580 TCACAAATGAATTAA
1 TCACAAATGAATTAA
26556595 GAATTAATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (16 bp):
TCACAAATGAATTAAT
Found at i:26557616 original size:24 final size:24
Alignment explanation
Indices: 26557584--26557632 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26557574 CCTAAGAGTT
26557584 TGATTTTCTCCCTTTTACATAGTC
1 TGATTTTCTCCCTTTTACATAGTC
26557608 TGATTTTCTCCCTTTTACATAGTC
1 TGATTTTCTCCCTTTTACATAGTC
26557632 T
1 T
26557633 TCAATCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.08, T:0.51
Consensus pattern (24 bp):
TGATTTTCTCCCTTTTACATAGTC
Done.