Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 88 of 182
Found at i:26557701 original size:25 final size:25
Alignment explanation
Indices: 26557658--26557725 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
26557648 AAGAAAGAAA
*
26557658 TAAAACAGCAAAA-AGAAAATCTACTC
1 TAAAA-AG-AAAAGAGAAAATCTAATC
26557684 TAAAAAGAAAAGAGAAAATCTAATC
1 TAAAAAGAAAAGAGAAAATCTAATC
*
26557709 TACAAATGAAAAG-GAAA
1 TA-AAAAGAAAAGAGAAA
26557726 GGAAAGGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 4 0.11
25 20 0.53
26 14 0.37
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.15
Consensus pattern (25 bp):
TAAAAAGAAAAGAGAAAATCTAATC
Found at i:26564172 original size:21 final size:23
Alignment explanation
Indices: 26564130--26564175 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
26564120 TAATTAATCA
*
26564130 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
26564153 TAAA-AGAAG-AAATAT-TTTT-
1 TAAACAGAAGCAAATATCTTTTC
26564172 TAAA
1 TAAA
26564176 AAAAATTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 4 0.18
20 4 0.18
21 5 0.23
22 5 0.23
23 4 0.18
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:26567454 original size:15 final size:16
Alignment explanation
Indices: 26567415--26567455 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
26567405 AAAGTTTCTC
*
26567415 CAAATTTTTAAGTTTT
1 CAAAATTTTAAGTTTT
26567431 CAAAA-TTTAAGTTTT
1 CAAAATTTTAAGTTTT
26567446 -AAAATTTTAA
1 CAAAATTTTAA
26567456 TTACAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (16 bp):
CAAAATTTTAAGTTTT
Found at i:26568982 original size:26 final size:26
Alignment explanation
Indices: 26568937--26569000 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
26568927 CGACCCATGG
*
26568937 CTCATGTGAGCAGGCCCATTTCACAA
1 CTCATGTGAGCAGACCCATTTCACAA
* *
26568963 CTCGTGTGAGCAGACTCATTTCACAA
1 CTCATGTGAGCAGACCCATTTCACAA
26568989 CTCATGTGAGCA
1 CTCATGTGAGCA
26569001 ACGATGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
CTCATGTGAGCAGACCCATTTCACAA
Found at i:26570958 original size:35 final size:35
Alignment explanation
Indices: 26570907--26570977 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
26570897 CACACAGCCG
*
26570907 TGTGACCCCTGCAGTATGAAATTTTCTATCTTTTT
1 TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
* *
26570942 TGTGATCCCTGTAGTATAAAATTTTCTATCTTTTT
1 TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
26570977 T
1 T
26570978 CTTAATGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (35 bp):
TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
Found at i:26572174 original size:42 final size:42
Alignment explanation
Indices: 26572124--26572206 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
26572114 ATTCATATGT
26572124 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
1 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
*
26572166 TTGGTTTAGTGGAATAGAGACTGTAATAGCATAAGGAAAAA
1 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAA
26572207 TGCTCAAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.25
Consensus pattern (42 bp):
TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
Found at i:26573926 original size:66 final size:66
Alignment explanation
Indices: 26573748--26573926 Score: 198
Period size: 66 Copynumber: 2.7 Consensus size: 66
26573738 CTAGTGAGCT
* * **
26573748 TACTGACTTGGGTCACACGGCCAAGCCACACGTCCATGTGCTAGGCTGTGTGAAAAATGATGGGC
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAATGATGGGC
26573813 A
66 A
* ** * *
26573814 TACTGACTTGTGACACACGGCCAAGCCACACACCCGTGAGCTAGGCCATGTGAAAACTGGA-GGG
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAAT-GATGGG
*
26573878 TA
65 CA
* ** * * *
26573880 TACTGACTTATGTCACACGGTTAAGTCACACGTCTGTGTGCCAGGCC
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCC
26573927 GTCTGACACT
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
66 90 0.98
67 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (66 bp):
TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAATGATGGGC
A
Found at i:26575249 original size:36 final size:35
Alignment explanation
Indices: 26575199--26575270 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 35
26575189 ACATTTAATA
26575199 CATATCTCGGAAGATCA-TCTTCCATATTTGCCAAG
1 CATATCTCGGAAGATCACT-TTCCATATTTGCCAAG
* * *
26575234 CATATCTTTGGAAGATCACTTTTCTTATTTGCCAAG
1 CATATC-TCGGAAGATCACTTTCCATATTTGCCAAG
26575270 C
1 C
26575271 TCCAGAGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 6 0.19
36 25 0.78
37 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (35 bp):
CATATCTCGGAAGATCACTTTCCATATTTGCCAAG
Found at i:26577785 original size:3 final size:3
Alignment explanation
Indices: 26577777--26577817 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
26577767 ATGACTCACC
* *
26577777 TAT TAT TAT TAT TAT T-T TTT TTT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26577818 CTTTAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (3 bp):
TAT
Found at i:26577804 original size:14 final size:14
Alignment explanation
Indices: 26577777--26577817 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
26577767 ATGACTCACC
26577777 TATTATTATTATTAT
1 TATTATT-TTATTAT
* *
26577792 TTTTTTTTTATTAT
1 TATTATTTTATTAT
26577806 TATTATTTTATT
1 TATTATTTTATT
26577818 CTTTAACTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTATTTTATTAT
Found at i:26580302 original size:41 final size:40
Alignment explanation
Indices: 26580257--26580371 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 40
26580247 AGCGGCACTT
* *
26580257 TTAGCGGCGTTTGTACAAAAAACGCCGCTAAAAATCGAGCA
1 TTAGCGGCGTTT-TAGAAAAAACGCCACTAAAAATCGAGCA
** ** *
26580298 TTAGCGGCGCATTAGTTAAAACGCCACTAAAGATCGAGCA
1 TTAGCGGCGTTTTAGAAAAAACGCCACTAAAAATCGAGCA
* *
26580338 TTAGCGGCGTTTTTTGAAAAAACGCCACAAAAAA
1 TTAGCGGCG-TTTTAGAAAAAACGCCACTAAAAA
26580372 CCTAAGCCCA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
40 32 0.54
41 27 0.46
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGTTTTAGAAAAAACGCCACTAAAAATCGAGCA
Found at i:26580487 original size:41 final size:41
Alignment explanation
Indices: 26580408--26580527 Score: 168
Period size: 41 Copynumber: 2.9 Consensus size: 41
26580398 CCTTTCGGGG
* * * * *
26580408 CTTTAGCGACGTTTTTAAAAAAATCGCCGCTAAAGCTCAGAT
1 CTTTAGCGGCGTTTCT-AGAAAAGCGCCGCTAATGCTCAGAT
26580450 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
* *
26580491 CTTTAGCGGCGATTCTAGAAATGCGCCGCTAATGCTC
1 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTC
26580528 GAGGCTTTAG
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 57 0.80
42 14 0.20
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (41 bp):
CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
Found at i:26581041 original size:14 final size:14
Alignment explanation
Indices: 26581011--26581062 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
26581001 GGGTTGTGAT
* *
26581011 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
*
26581025 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
26581039 TTAATGGTTAGAGG
1 TTAAGGGTTAGGGG
*
26581053 TTAAGAGTTA
1 TTAAGGGTTA
26581063 AGGATTTAAG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:26581062 original size:21 final size:21
Alignment explanation
Indices: 26581023--26581063 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26581013 AAGGTTTATG
* * *
26581023 GGTTAGGGGTTAGGGGTTAAT
1 GGTTAGAGGTTAAGAGTTAAT
26581044 GGTTAGAGGTTAAGAGTTAA
1 GGTTAGAGGTTAAGAGTTAA
26581064 GGATTTAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.41, T:0.32
Consensus pattern (21 bp):
GGTTAGAGGTTAAGAGTTAAT
Found at i:26582451 original size:148 final size:150
Alignment explanation
Indices: 26582182--26582499 Score: 475
Period size: 148 Copynumber: 2.1 Consensus size: 150
26582172 ATAATTTTTT
* * *
26582182 GCGGCGTTTTTAT-GAAAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCATTTTAG
1 GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCATTTTAA
* *
26582246 CATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATAATTTTTTTGCGGCATTTTTATGAAAAA-
66 CATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTAT-AAAAAG
* *
26582310 CGCCGTAAAATG-TAAGCAATA
130 CGCCGCAAAA-GATAAGCAAAA
* * *
26582331 GCGGCGTTTTTATAAAAAAACACCAC-AAAATTAATTTTACTT-TAAAAAATAGCGTCATTTTAA
1 GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCATTTTAA
*
26582394 CATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGT
66 CATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGC
26582459 GCCGCAAAAGATAAGCAAAA
131 GCCGCAAAAGATAAGCAAAA
*
26582479 GGGGCGTTTTTATAAAAAAAC
1 GCGGCGTTTTTATAAAAAAAC
26582500 CCAAAAGCTT
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
147 6 0.04
148 110 0.71
149 28 0.18
150 10 0.06
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (150 bp):
GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCATTTTAA
CATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGC
GCCGCAAAAGATAAGCAAAA
Found at i:26586999 original size:43 final size:42
Alignment explanation
Indices: 26586949--26587217 Score: 313
Period size: 43 Copynumber: 6.3 Consensus size: 42
26586939 ATTATGTTTT
*
26586949 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTA
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCATGGTCTA
* * * * *
26586992 TGGCGGCGTTTGAGGAAAAAGTGCCACTAAAGGTCATGGTCAA
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
26587035 TAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTA
1 TAGCGGCGTTTG-TGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
26587078 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAATGGTCATGGTCTT
1 TAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
26587121 TAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGGTTATGGTCTT
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCATGGTCTA
* * * *
26587164 TGGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTT
1 TAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGGTCTA
26587207 TAGCGGCGTTT
1 TAGCGGCGTTT
26587218 ATTTTTAAAA
Statistics
Matches: 199, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
42 4 0.02
43 191 0.96
44 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGGTCTA
Found at i:26587054 original size:86 final size:86
Alignment explanation
Indices: 26586947--26587217 Score: 357
Period size: 86 Copynumber: 3.2 Consensus size: 86
26586937 AGATTATGTT
* * *
26586947 TTTAGCGGCGTTTG-TGAGAAAAGCGCCGCTAAAGGTCATAGTCTATGGCGGCGTTTGAGGAAAA
1 TTTAGCGGCGTTTGTTG-GAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAA
* *
26587011 AGTGCCACTAAAGGTCATGGTC
65 AGCGCCGCTAAAGGTCATGGTC
** * * * * *
26587033 AATAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTATAGCGGCGTTTTTGGGAAAA
1 TTTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAAA
*
26587098 GCGCCGCTAATGGTCATGGTC
66 GCGCCGCTAAAGGTCATGGTC
* *
26587119 TTTAGCGGCGTTT-TTGGAAAAAGCGCCGCTAAAGGTTATGGTCTTTGGCGGCGTTTGTGGGAAA
1 TTTAGCGGCGTTTGTTGG-AAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAA
* *
26587183 AGCACCGCTAAAGGTCTTGGTC
65 AGCGCCGCTAAAGGTCATGGTC
26587205 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
26587218 ATTTTTAAAA
Statistics
Matches: 158, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
85 4 0.03
86 152 0.96
87 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAAA
GCGCCGCTAAAGGTCATGGTC
Found at i:26587182 original size:129 final size:129
Alignment explanation
Indices: 26586949--26587217 Score: 349
Period size: 129 Copynumber: 2.1 Consensus size: 129
26586939 ATTATGTTTT
* *
26586949 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATGGCGGCGTTTGAGGAAAAAGT
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
* ** *
26587014 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTA
66 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
* * * * * **
26587078 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAATGGTCATGGTCTTTAGCGGCGTTTTTGGAAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
* * ** * * * *
26587143 GCCGCTAAAGGTTATGGTCTTTGGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTT
66 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
26587207 TAGCGGCGTTT
1 TAGCGGCGTTT
26587218 ATTTTTAAAA
Statistics
Matches: 119, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
129 119 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (129 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
Found at i:26589267 original size:202 final size:202
Alignment explanation
Indices: 26588915--26589323 Score: 705
Period size: 202 Copynumber: 2.0 Consensus size: 202
26588905 AAATTTTATC
** * *
26588915 AAAATAATTTATGATTCGTGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTACTTA
1 AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
*
26588980 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTCAATTGTGAAAAATCTATTTGGTTGGAA
66 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCTATTTGGTTGGAA
*
26589045 TATTTATTTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
131 TATTTAATTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
26589110 ATGATGA
196 ATGATGA
*
26589117 AAAATAAAGTATGATTCATGAATGGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
1 AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
*
26589182 AATTAGATAATTATGAAAAGCTTAATGATTAAGGGCTAAATTGTGAAAAATCTAATTT-GTTGGA
66 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCT-ATTTGGTTGGA
*
26589246 ATATTTAATTATT-TGTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTATAGAA
130 ATATTTAATTATTAT-TTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAA
26589310 AGATGATGA
194 AGATGATGA
26589319 AAAAT
1 AAAAT
26589324 CATCCATGTC
Statistics
Matches: 196, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
201 1 0.01
202 191 0.97
203 4 0.02
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (202 bp):
AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCTATTTGGTTGGAA
TATTTAATTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
ATGATGA
Found at i:26598193 original size:2 final size:2
Alignment explanation
Indices: 26598186--26598216 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26598176 GTCTGCTATT
*
26598186 TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
26598217 TGAAGCTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:26600730 original size:9 final size:9
Alignment explanation
Indices: 26600716--26600755 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
26600706 GTAGTGATTC
26600716 AATTCGGTT
1 AATTCGGTT
*
26600725 AATTCGGAT
1 AATTCGGTT
26600734 AATTCGGTT
1 AATTCGGTT
*
26600743 AATTCGGGT
1 AATTCGGTT
26600752 AATT
1 AATT
26600756 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:26600739 original size:18 final size:18
Alignment explanation
Indices: 26600716--26600755 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
26600706 GTAGTGATTC
26600716 AATTCGGTTAATTCGGAT
1 AATTCGGTTAATTCGGAT
*
26600734 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGAT
26600752 AATT
1 AATT
26600756 TTTAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (18 bp):
AATTCGGTTAATTCGGAT
Found at i:26615514 original size:6 final size:6
Alignment explanation
Indices: 26615503--26615529 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26615493 ACCCCTTTCT
26615503 TCCATC TCCATC TCCATC TCCATC TCC
1 TCCATC TCCATC TCCATC TCCATC TCC
26615530 TTTCTGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
TCCATC
Found at i:26619262 original size:12 final size:12
Alignment explanation
Indices: 26619245--26619269 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26619235 AGGTGCTGCA
26619245 AAAGAAACAAAG
1 AAAGAAACAAAG
26619257 AAAGAAACAAAG
1 AAAGAAACAAAG
26619269 A
1 A
26619270 GCAGAAGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAGAAACAAAG
Found at i:26622854 original size:17 final size:17
Alignment explanation
Indices: 26622823--26622871 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 17
26622813 TAGAATTGTG
*
26622823 TTGAGAAAATTATTTAAT
1 TTGA-AAAATAATTTAAT
26622841 TTGAAAAATAATTT-AT
1 TTGAAAAATAATTTAAT
*
26622857 TT--AAATTAATTTAAT
1 TTGAAAAATAATTTAAT
26622872 AAATAATACT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 9 0.32
15 2 0.07
16 4 0.14
17 9 0.32
18 4 0.14
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
TTGAAAAATAATTTAAT
Found at i:26625433 original size:19 final size:19
Alignment explanation
Indices: 26625386--26625436 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
26625376 GTAATATATA
26625386 TAATTGATAT-TTTATGAT
1 TAATTGATATATTTATGAT
26625404 TGAATTG-TATATTTATG-T
1 T-AATTGATATATTTATGAT
26625422 TAATTGAATATATTT
1 TAATTG-ATATATTT
26625437 TGAATTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.17
18 6 0.21
19 18 0.62
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (19 bp):
TAATTGATATATTTATGAT
Found at i:26627495 original size:25 final size:23
Alignment explanation
Indices: 26627451--26627496 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
26627441 ATGTTAATTG
26627451 ATTTAATTTTAAATAAAATAATA
1 ATTTAATTTTAAATAAAATAATA
* *
26627474 ATTTACATATTTAGATAGAATAA
1 ATTTA-AT-TTTAAATAAAATAA
26627497 ATATGTTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 2 0.11
25 12 0.63
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
ATTTAATTTTAAATAAAATAATA
Found at i:26632424 original size:26 final size:25
Alignment explanation
Indices: 26632395--26632451 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
26632385 CTTGTTATCT
26632395 TTTTTTCAAATTTCAG-CTTCTCATAC
1 TTTTTTCAAATTTCAGCCTT-TC-TAC
** *
26632421 TTTTCCCAAATTTCGGCCTTTCTAC
1 TTTTTTCAAATTTCAGCCTTTCTAC
26632446 TTTTTT
1 TTTTTT
26632452 TTTTGACATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
25 7 0.28
26 15 0.60
27 3 0.12
ACGTcount: A:0.18, C:0.25, G:0.05, T:0.53
Consensus pattern (25 bp):
TTTTTTCAAATTTCAGCCTTTCTAC
Found at i:26638960 original size:45 final size:45
Alignment explanation
Indices: 26638884--26638990 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
26638874 GTAATGGTAG
*
26638884 CAGTAACAGTAACAGTAACAGAATTCAACACACAAAGTG-CTGAAT
1 CAGTAATAGTAACAGTAACAGAATTCAACACACAAAGTGTC-GAAT
* * * *
26638929 CTGTCATAGTAAC-GATAACAGTATTCGACACACAAAGTGTCGAAT
1 CAGTAATAGTAACAG-TAACAGAATTCAACACACAAAGTGTCGAAT
26638974 CAGTAATAGTAACAGTA
1 CAGTAATAGTAACAGTA
26638991 GTAAGCATCT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.02
45 49 0.94
46 2 0.04
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (45 bp):
CAGTAATAGTAACAGTAACAGAATTCAACACACAAAGTGTCGAAT
Found at i:26639250 original size:40 final size:40
Alignment explanation
Indices: 26639190--26639276 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
26639180 AATTCATTAC
* * *
26639190 TTCAGTAATTTCACAGTTCAATGCAATACACATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAATACACAAAACAATA
* * * *
26639230 TTCAGTAACTTCACAATTCAATTCAGTACTCAAAAGAATA
1 TTCAGTAACTTCACAATTCAATGCAATACACAAAACAATA
26639270 TTCAGTA
1 TTCAGTA
26639277 TTCCATAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATGCAATACACAAAACAATA
Found at i:26640068 original size:5 final size:5
Alignment explanation
Indices: 26640058--26640084 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26640048 TTACCTATTT
26640058 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
26640085 CTTATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:26641809 original size:34 final size:34
Alignment explanation
Indices: 26641766--26641836 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
26641756 GATTTCGAAA
26641766 TCTCAAACAATCATGATCATCAACACTAAAATTT
1 TCTCAAACAATCATGATCATCAACACTAAAATTT
26641800 TCTCAAACAATCATGATCATCAACACTAAAATTT
1 TCTCAAACAATCATGATCATCAACACTAAAATTT
26641834 TCT
1 TCT
26641837 ACTGGGCCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.31
Consensus pattern (34 bp):
TCTCAAACAATCATGATCATCAACACTAAAATTT
Found at i:26646219 original size:45 final size:45
Alignment explanation
Indices: 26646124--26646223 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
26646114 TAACGGTAGT
* * **
26646124 AGTAACAGTAACAGTATTCAACGCAAAAAGTGTTGAATCTGTAAC
1 AGTAACAGTAACAGTATTCAACACAAAAAGTGTCGAATCAATAAC
* * *
26646169 AGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCAATAAC
1 AGTAACAGTAACAGTATTCAACACAAAAAGTGTCGAATCAATAAC
*
26646214 TGTAACAGTA
1 AGTAACAGTA
26646224 GTCGGCATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (45 bp):
AGTAACAGTAACAGTATTCAACACAAAAAGTGTCGAATCAATAAC
Found at i:26647307 original size:5 final size:5
Alignment explanation
Indices: 26647297--26647512 Score: 432
Period size: 5 Copynumber: 43.2 Consensus size: 5
26647287 TTTCTTTACC
26647297 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
26647347 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
26647397 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
26647447 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
26647497 TATAA TATAA TATAA T
1 TATAA TATAA TATAA T
26647513 CTTATTTATT
Statistics
Matches: 211, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 211 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:26650309 original size:20 final size:20
Alignment explanation
Indices: 26650286--26650340 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
26650276 GTGACAAGGC
*
26650286 ACACGCCCGTGTGACTGAGG
1 ACACGCCCATGTGACTGAGG
**
26650306 ACACTTCCATGTGACTGAAGG
1 ACACGCCCATGTGACTG-AGG
* *
26650327 TCACACCCATGTGA
1 ACACGCCCATGTGA
26650341 GTAGGCCGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (20 bp):
ACACGCCCATGTGACTGAGG
Found at i:26650338 original size:21 final size:20
Alignment explanation
Indices: 26650295--26650340 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
26650285 CACACGCCCG
**
26650295 TGTGACTGAGGACACTTCCA
1 TGTGACTGAGGACACACCCA
*
26650315 TGTGACTGAAGGTCACACCCA
1 TGTGACTG-AGGACACACCCA
26650336 TGTGA
1 TGTGA
26650341 GTAGGCCGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (20 bp):
TGTGACTGAGGACACACCCA
Found at i:26651232 original size:15 final size:16
Alignment explanation
Indices: 26651212--26651241 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26651202 GAAATTTCCT
26651212 ACTAACTCG-ACAATC
1 ACTAACTCGCACAATC
26651227 ACTAACTCGCACAAT
1 ACTAACTCGCACAAT
26651242 TTGCTACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.20
Consensus pattern (16 bp):
ACTAACTCGCACAATC
Found at i:26664010 original size:41 final size:41
Alignment explanation
Indices: 26663951--26664164 Score: 288
Period size: 41 Copynumber: 5.2 Consensus size: 41
26663941 AGAATATCCT
*
26663951 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * *
26663992 TGAATTGCACATATGTGCCTCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * * *
26664033 TGAATTGCACATACGTGCCCTTTTTTTTTAGTTTGGTACCCC
1 TGAATTGCACATACGTGCCC-CTGTTTGTACTTTGGTACCCC
* **
26664075 CGAATTGCACATATATGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* *
26664116 TGAATTGCACATACGTGCCCCT-TTTGTACTATAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
26664156 TGAA-TGCAC
1 TGAATTGCAC
26664165 TTTTGTACCC
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 5 0.03
40 20 0.13
41 91 0.61
42 33 0.22
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.36
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
Found at i:26664099 original size:83 final size:82
Alignment explanation
Indices: 26663951--26664145 Score: 284
Period size: 83 Copynumber: 2.4 Consensus size: 82
26663941 AGAATATCCT
* * * * *
26663951 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAATTGCACATATGTGCCTCTGT
1 TGAATTGCACATACGTGCCCTTTTTTGTACTTTGATACCCCCGAATTGCACATATATGCCCCTGT
26664016 TTGTACTTCGGTACCCC
66 TTGTACTTCGGTACCCC
* * *
26664033 TGAATTGCACATACGTGCCCTTTTTTTTTAGTTTGGTACCCCCGAATTGCACATATATGCCCCTG
1 TGAATTGCACATACGTGCCC-TTTTTTGTACTTTGATACCCCCGAATTGCACATATATGCCCCTG
*
26664098 TTTGTACTTTGGTACCCC
65 TTTGTACTTCGGTACCCC
*
26664116 TGAATTGCACATACGTGCCC-CTTTTGTACT
1 TGAATTGCACATACGTGCCCTTTTTTGTACT
26664146 ATAGTACCCC
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
81 7 0.07
82 20 0.20
83 73 0.73
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.37
Consensus pattern (82 bp):
TGAATTGCACATACGTGCCCTTTTTTGTACTTTGATACCCCCGAATTGCACATATATGCCCCTGT
TTGTACTTCGGTACCCC
Found at i:26664904 original size:15 final size:15
Alignment explanation
Indices: 26664886--26664920 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26664876 AGTCGTGTGT
26664886 GACATACAGCCTGGC
1 GACATACAGCCTGGC
26664901 GACATACAGCCTGGC
1 GACATACAGCCTGGC
26664916 GACAT
1 GACAT
26664921 GGCCGTGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (15 bp):
GACATACAGCCTGGC
Found at i:26667660 original size:165 final size:165
Alignment explanation
Indices: 26667388--26667713 Score: 598
Period size: 165 Copynumber: 2.0 Consensus size: 165
26667378 AGTATAGACA
*
26667388 AAAACTTAAGTTACTTATACAATTTACAATTAATTATAACTTTACTACACATTCCCACTCAAACT
1 AAAACTTAAGCTACTTATACAATTTACAATTAATTATAACTTTACTACACATTCCCACTCAAACT
* *
26667453 AATTTATACATGCATAGACAATAGGTAAATACAATTGCAGTACATGGTAATTTAATTAGAAGAAA
66 AATTTACACATGCATACACAATAGGTAAATACAATTGCAGTACATGGTAATTTAATTAGAAGAAA
**
26667518 TCTGAATTGAAATTCTCCTCTATTATAGTTGTCCT
131 TCTGAATTGAAACCCTCCTCTATTATAGTTGTCCT
*
26667553 AAAACTTAAGCTACTTATACAATTTACAATTAATTATAACTTTACTACACATTCCTACTCAAACT
1 AAAACTTAAGCTACTTATACAATTTACAATTAATTATAACTTTACTACACATTCCCACTCAAACT
26667618 AATTTACACATGCATACACAATAGGTAAATACAATTGCAGTACATGGTAATTTAATTAGAAGAAA
66 AATTTACACATGCATACACAATAGGTAAATACAATTGCAGTACATGGTAATTTAATTAGAAGAAA
26667683 TCTGAATTGAAACCCTCCTCTATTATAGTTG
131 TCTGAATTGAAACCCTCCTCTATTATAGTTG
26667714 CCCCAAAATT
Statistics
Matches: 155, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
165 155 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (165 bp):
AAAACTTAAGCTACTTATACAATTTACAATTAATTATAACTTTACTACACATTCCCACTCAAACT
AATTTACACATGCATACACAATAGGTAAATACAATTGCAGTACATGGTAATTTAATTAGAAGAAA
TCTGAATTGAAACCCTCCTCTATTATAGTTGTCCT
Found at i:26670514 original size:31 final size:31
Alignment explanation
Indices: 26670465--26670978 Score: 664
Period size: 31 Copynumber: 16.7 Consensus size: 31
26670455 GTATATGTTT
* * *
26670465 TATACATTGTC-AAATTGATTTGTATAAAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
26670495 TATACATTGTCGAATTTGATTTGTTTATAGG
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * * *
26670526 TATACATTGTTGAAATTGAATTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670557 TATACATTGTC-AAATTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670587 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670618 TATACATTGCCGAATTTAATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670649 TATATATTGCCTAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
26670679 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
26670710 TATACATTGTCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
26670741 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
26670772 TATACATTCCCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
26670802 TATACATTGCC-AAATTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670832 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670863 TATACATTGCCAAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670894 TATTCATTGCC-AAATTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26670924 TATACATTGCTGAATTTGATTTGTATATGAATA
1 TATACATTGCCGAATTTGATTTGTATAT--AGA
*
26670957 TATATATTGCCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
26670979 AGCATTGAAT
Statistics
Matches: 431, Mismatches: 45, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
29 2 0.00
30 143 0.33
31 264 0.61
32 8 0.02
33 14 0.03
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:26670585 original size:61 final size:62
Alignment explanation
Indices: 26670465--26670978 Score: 664
Period size: 61 Copynumber: 8.4 Consensus size: 62
26670455 GTATATGTTT
* * * * *
26670465 TATACATTGTC-AAATTGATTTGTATAAAGATATACATTGTCGAATTTGATTTGTTTATAGG
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
** * * * *
26670526 TATACATTGTTGAAATTGAATTGTTTATAGATATACATTGTC-AAATTGATTTGTATATAGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* * * * *
26670587 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTAATTTGTATATGGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* *
26670649 TATATATTGCC-TAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* * * *
26670710 TATACATTGTCGAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* *
26670772 TATACATTCCCG-AATTGATTTGTATATAGATATACATTGCC-AAATTGATTTGTATATAGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* * * * *
26670832 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCAAATTTGATTTGTATATGGA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* * *
26670894 TATTCATTGCC-AAATTGATTTGTATATAGATATACATTGCTGAATTTGATTTGTATATGAATA
1 TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATAT--AGA
*
26670957 TATATATTGCCG-AATTGATTTG
1 TATACATTGCCGAAATTGATTTG
26670979 AGCATTGAAT
Statistics
Matches: 392, Mismatches: 53, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
60 29 0.07
61 207 0.53
62 136 0.35
63 20 0.05
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (62 bp):
TATACATTGCCGAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
Found at i:26670601 original size:92 final size:91
Alignment explanation
Indices: 26670465--26670978 Score: 631
Period size: 92 Copynumber: 5.6 Consensus size: 91
26670455 GTATATGTTT
* * * *
26670465 TATACATTGTCAAATTGATTTGTATAAAGATATACATTGTCGAATTTGATTTGTTTATAGGTATA
1 TATACATTGCCAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGGTATA
* * *
26670530 CATTGTTGAAATTGAATTGTTTATAGA
66 CATTG-CGAAATTGATTTGTATATAGA
*
26670557 TATACATTGTCAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATAT-GGTTAT
1 TATACATTGCCAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGG-TAT
* * *
26670621 ACATTGCCGAATTTAATTTGTATATGGA
65 ACATTG-CGAAATTGATTTGTATATAGA
* * *
26670649 TATATATTGCCTAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATA
1 TATACATTGCCAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGGTATA
* * *
26670714 CATTGTCGAATTTGATTTGTATATGGT
66 CATTG-CGAAATTGATTTGTATATAGA
* * *
26670741 TATACATTGCCGAATTTGATTTGTATATAGATATACATTCCCGAA-TTGATTTGTATATAGATAT
1 TATACATTGCC-AAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGGTAT
*
26670805 ACATTGCCAAATTGATTTGTATATAGA
65 ACATTGCGAAATTGATTTGTATATAGA
* * * *
26670832 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCAAATTTGATTTGTATAT-GGATA
1 TATACATTGCC-AAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGG-TA
* *
26670896 TTCATTGCCAAATTGATTTGTATATAGA
64 TACATTGCGAAATTGATTTGTATATAGA
* * * *
26670924 TATACATTGCTGAATTTGATTTGTATATGAATATATATATTGCCGAA-TTGATTTG
1 TATACATTGC-CAAATTGATTTGTATAT--AGATATACATTGCCGAATTTGATTTG
26670979 AGCATTGAAT
Statistics
Matches: 377, Mismatches: 37, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
91 61 0.16
92 265 0.70
93 39 0.10
94 12 0.03
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (91 bp):
TATACATTGCCAAATTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGGTATA
CATTGCGAAATTGATTTGTATATAGA
Found at i:26672734 original size:30 final size:31
Alignment explanation
Indices: 26672694--26672779 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 31
26672684 ATAGTACGAG
*
26672694 GTATGAATATG-TTAATATGAATG-TTACAAT
1 GTATGAATATGAAT-ATATGAATGATTACAAT
* *
26672724 GTATGCATATGAATATATGAATGATTAC-AG
1 GTATGAATATGAATATATGAATGATTACAAT
* * *
26672754 GTAAGAAAATGAAAATATGAATGATT
1 GTATGAATATGAATATATGAATGATT
26672780 GATGCCGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
30 42 0.89
31 5 0.11
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (31 bp):
GTATGAATATGAATATATGAATGATTACAAT
Found at i:26680040 original size:16 final size:15
Alignment explanation
Indices: 26680019--26680048 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26680009 GAACAGATCA
26680019 AAAAATAAATAAAAAT
1 AAAAATAAA-AAAAAT
26680035 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
26680049 CTTTGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:26681169 original size:92 final size:92
Alignment explanation
Indices: 26681012--26681195 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
26681002 GAGATAAGAT
26681012 TTTCCATCTTCAGTCTTTTGAATTGTAATGTTGGGGAAATGAGATTCGCCGTTGTAGCTTCAATC
1 TTTCCATCTTCAGTCTTTTGAATTGTAATGTTGGGGAAATGAGATTCGCCGTTGTAGCTTCAATC
26681077 TGTTCCACTACACCGCAAGGGGAATAA
66 TGTTCCACTACACCGCAAGGGGAATAA
26681104 TTTCCATCTTCAGTCTTTTGAATTGTAATGTTGGGGAAATGAGATTCGCCGTTGTAGCTTCAATC
1 TTTCCATCTTCAGTCTTTTGAATTGTAATGTTGGGGAAATGAGATTCGCCGTTGTAGCTTCAATC
26681169 TGTTCCACTACACCGCAAGGGGAATAA
66 TGTTCCACTACACCGCAAGGGGAATAA
26681196 GATTCGTCGT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (92 bp):
TTTCCATCTTCAGTCTTTTGAATTGTAATGTTGGGGAAATGAGATTCGCCGTTGTAGCTTCAATC
TGTTCCACTACACCGCAAGGGGAATAA
Found at i:26681497 original size:169 final size:169
Alignment explanation
Indices: 26681210--26681849 Score: 933
Period size: 169 Copynumber: 3.8 Consensus size: 169
26681200 CGTCGTTGCG
* **
26681210 GCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCGATCCGCTC
1 GCTTTAATCTATTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTC
* * * * * * *
26681275 CACCTCAGCTA-TTCTAAGTCTCAACGCCAGGGAGATAAGATCCGCTGCCCTCAGCTTTAATCTG
66 CACTTCAACTATTTC-AACTCTTAACACCAGGGAGATAAGATTCGCTACCCTCAGCTTTAATCTG
26681339 CTCCGCTGCAACACTAGGGAAACAAGATTCGCTACATTTA
130 CTCCGCTGCAACACTAGGGAAACAAGATTCGCTACATTTA
* * *
26681379 GCTTTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCTGTTC
1 GCTTTAATCTATTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTC
* *
26681444 CACTTCAATTATTTCAACTCTTAACACCAGAGAGATAAGATTCGCTACCCTCAGCTTTAATCTGC
66 CACTTCAACTATTTCAACTCTTAACACCAGGGAGATAAGATTCGCTACCCTCAGCTTTAATCTGC
*
26681509 TCCGCTGCAACACTAGGGAAACAAGATTCGCTACTTTTA
131 TCCGCTGCAACACTAGGGAAACAAGATTCGCTACATTTA
* *
26681548 GCTTTAATCCATTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCTGCTC
1 GCTTTAATCTATTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTC
* * *
26681613 CACTTCAGCTATTTCAACTCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAACTTTAATCTGC
66 CACTTCAACTATTTCAACTCTTAACACCAGGGAGATAAGATTCGCTACCCTCAGCTTTAATCTGC
** * * *
26681678 TCCATTGCAACGCTAGGGAAACAATATTCGCTACCTTTA
131 TCCGCTGCAACACTAGGGAAACAAGATTCGCTACATTTA
* * *
26681717 ACTTTAATCTGTTCCACTATAATTCCAAAGAGATAGGA-TCTGCTGCCCACAGCTTTAATCCGCT
1 GCTTTAATCTATTCCACTATAATGCCAAAGAGATAGGATTC-GCTGCCCACAGCTTTAATCCGCT
* * * * * *
26681781 CTACTTCATCTATTTCAAGTCTTAACGCCAGGGAGATAAGATTCGTTACCCTCAGCTTTAATCTT
65 CCACTTCAACTATTTCAACTCTTAACACCAGGGAGATAAGATTCGCTACCCTCAGCTTTAATCTG
26681846 CTCC
130 CTCC
26681850 ACTATAATGT
Statistics
Matches: 427, Mismatches: 42, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
168 2 0.00
169 422 0.99
170 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (169 bp):
GCTTTAATCTATTCCACTATAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTC
CACTTCAACTATTTCAACTCTTAACACCAGGGAGATAAGATTCGCTACCCTCAGCTTTAATCTGC
TCCGCTGCAACACTAGGGAAACAAGATTCGCTACATTTA
Found at i:26681920 original size:44 final size:44
Alignment explanation
Indices: 26681871--26681957 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
26681861 AGGAAAGTAA
26681871 GATTCACAATCTTCAACCTATTCCACTGCTAACTAGGGAGATAG
1 GATTCACAATCTTCAACCTATTCCACTGCTAACTAGGGAGATAG
* * *
26681915 GATTCACAATCTTTAACCTATTCCGCTGCTGACTAGGGAGATA
1 GATTCACAATCTTCAACCTATTCCACTGCTAACTAGGGAGATA
26681958 AGGCTAGGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
GATTCACAATCTTCAACCTATTCCACTGCTAACTAGGGAGATAG
Found at i:26684896 original size:9 final size:9
Alignment explanation
Indices: 26684882--26684966 Score: 116
Period size: 9 Copynumber: 9.4 Consensus size: 9
26684872 TTTGGTTAAA
26684882 AATTAACCG
1 AATTAACCG
*
26684891 AATTAACCA
1 AATTAACCG
26684900 AATTAACCG
1 AATTAACCG
*
26684909 AATTACCCG
1 AATTAACCG
26684918 AATTAACCG
1 AATTAACCG
*
26684927 AATTAATCG
1 AATTAACCG
*
26684936 AATTACCCG
1 AATTAACCG
*
26684945 AATTAACCA
1 AATTAACCG
*
26684954 AATTAACCA
1 AATTAACCG
26684963 AATT
1 AATT
26684967 GAATCACTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 67 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:26684918 original size:27 final size:27
Alignment explanation
Indices: 26684882--26684966 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
26684872 TTTGGTTAAA
*
26684882 AATTAACCGAATTAACCAAATTAACCG
1 AATTACCCGAATTAACCAAATTAACCG
* *
26684909 AATTACCCGAATTAACCGAATTAATCG
1 AATTACCCGAATTAACCAAATTAACCG
*
26684936 AATTACCCGAATTAACCAAATTAACCA
1 AATTACCCGAATTAACCAAATTAACCG
26684963 AATT
1 AATT
26684967 GAATCACTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTACCCGAATTAACCAAATTAACCG
Found at i:26685113 original size:18 final size:18
Alignment explanation
Indices: 26685073--26685116 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26685063 TAATTTTATG
**
26685073 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
26685091 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
26685109 CTTGGGTT
1 ATTGGGTT
26685117 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:26693414 original size:12 final size:12
Alignment explanation
Indices: 26693399--26693425 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26693389 ATAATAATAA
26693399 TAATAATTTAAT
1 TAATAATTTAAT
26693411 TAATAATTTAAT
1 TAATAATTTAAT
26693423 TAA
1 TAA
26693426 AAAAACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATTTAAT
Found at i:26698703 original size:21 final size:22
Alignment explanation
Indices: 26698660--26698706 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
26698650 AAATTTAGTA
*
26698660 TATTTTAAATTTATTACCATAT
1 TATTTTAAATTTATTAACATAT
26698682 TATTTT-AATATTA-TAACATAT
1 TATTTTAAAT-TTATTAACATAT
26698703 TATT
1 TATT
26698707 GTTCTAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTTTAAATTTATTAACATAT
Found at i:26700482 original size:52 final size:52
Alignment explanation
Indices: 26700410--26700514 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 52
26700400 AAATATTTAG
* * * * **
26700410 AATTAGAACTAAATTGACAAAATTTGTAAATGTTGAGGGCTAAATTTATTAA
1 AATTAGAACTAAAATAACAAAATTTATAAATATTGAAAGCTAAATTTATTAA
* * * *
26700462 AATTTGAACTAAAATAACAAATTTTATCAATATTGAAAGCTAAATTTGTTAA
1 AATTAGAACTAAAATAACAAAATTTATAAATATTGAAAGCTAAATTTATTAA
26700514 A
1 A
26700515 TTTTTATATT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (52 bp):
AATTAGAACTAAAATAACAAAATTTATAAATATTGAAAGCTAAATTTATTAA
Found at i:26700974 original size:15 final size:15
Alignment explanation
Indices: 26700954--26701009 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
26700944 TAAAATATAA
26700954 AATATTATAATTTTT
1 AATATTATAATTTTT
* **
26700969 AATATTATTAAACTATAA
1 AATATTA-T-AA-TTTTT
26700987 AATATTATAATTTTT
1 AATATTATAATTTTT
26701002 AATATTAT
1 AATATTAT
26701010 TAAACATACA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
15 17 0.53
16 3 0.09
17 3 0.09
18 9 0.28
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
AATATTATAATTTTT
Found at i:26701030 original size:36 final size:33
Alignment explanation
Indices: 26700935--26701014 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
26700925 ATTTTTTAAA
* *
26700935 TTAATAATA-TAAAATATAAAATATTATAATTT
1 TTAATATTATTAAACTATAAAATATTATAATTT
26700967 TTAATATTATTAAACTATAAAATATTATAATTT
1 TTAATATTATTAAACTATAAAATATTATAATTT
26701000 TTAATATTATTAAAC
1 TTAATATTATTAAAC
26701015 ATACATATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 8 0.18
33 37 0.82
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TTAATATTATTAAACTATAAAATATTATAATTT
Found at i:26701134 original size:15 final size:16
Alignment explanation
Indices: 26701107--26701137 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26701097 ACTTTATTCT
26701107 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
26701123 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
26701138 TTATATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:26701198 original size:15 final size:15
Alignment explanation
Indices: 26701174--26701206 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26701164 ATTTGATATT
*
26701174 AATATTTTAATAATA
1 AATATATTAATAATA
26701189 AATATATTAATAATA
1 AATATATTAATAATA
26701204 AAT
1 AAT
26701207 GTTCTGTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:26724658 original size:42 final size:42
Alignment explanation
Indices: 26724621--26724777 Score: 113
Period size: 42 Copynumber: 3.8 Consensus size: 42
26724611 AGGCTGCAGA
*
26724621 GAAGCACATAAGTGCTAAACAGAAACCCATAAGGGCTGAATG
1 GAAGCACATAAGAGCTAAACAGAAACCCATAAGGGCTGAATG
* * * * * *
26724663 GAAGCTCGTAAGAGCTGAACGGAAACCCATAAGGGTTAAACT-
1 GAAGCACATAAGAGCTAAACAGAAACCCATAAGGGCTGAA-TG
** * * ** *
26724705 GAAGCTTAAAAG-GCTAAACGGAAACCCATAAGGATTAAACT-
1 GAAGCACATAAGAGCTAAACAGAAACCCATAAGGGCTGAA-TG
* * * *
26724746 GAAGCTCAAAAGAGCTGAACAAAAACCCATAA
1 GAAGCACATAAGAGCTAAACAGAAACCCATAA
26724778 AGGTTAAACT
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
41 38 0.39
42 58 0.60
43 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.15
Consensus pattern (42 bp):
GAAGCACATAAGAGCTAAACAGAAACCCATAAGGGCTGAATG
Found at i:26724695 original size:21 final size:21
Alignment explanation
Indices: 26724627--26724695 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
26724617 CAGAGAAGCA
* * *
26724627 CATAAGTGCTAAACAGAAACC
1 CATAAGAGCTGAACGGAAACC
* * * *
26724648 CATAAGGGCTGAATGGAAGCT
1 CATAAGAGCTGAACGGAAACC
*
26724669 CGTAAGAGCTGAACGGAAACC
1 CATAAGAGCTGAACGGAAACC
26724690 CATAAG
1 CATAAG
26724696 GGTTAAACTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (21 bp):
CATAAGAGCTGAACGGAAACC
Found at i:26724743 original size:21 final size:20
Alignment explanation
Indices: 26724680--26724744 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
26724670 GTAAGAGCTG
26724680 AACGGAAACCCATAAGGGTTA
1 AACGGAAACCCATAA-GGTTA
* * ** * *
26724701 AACTGAAGCTTAAAAGGCTA
1 AACGGAAACCCATAAGGTTA
26724721 AACGGAAACCCATAAGGATTA
1 AACGGAAACCCATAAGG-TTA
26724742 AAC
1 AAC
26724745 TGAAGCTCAA
Statistics
Matches: 31, Mismatches: 12, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.15
Consensus pattern (20 bp):
AACGGAAACCCATAAGGTTA
Found at i:26724750 original size:83 final size:83
Alignment explanation
Indices: 26724634--26724790 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 83
26724624 GCACATAAGT
* * ** ** *
26724634 GCTAAACAGAAACCCATAAGGGCTGAATGGAAGCTCGTAAGAGCTGAACGGAAACCCATAAGGGT
1 GCTAAACAGAAACCCATAAGGACTAAATGGAAGCTCAAAAGAGCTGAACAAAAACCCATAAAGGT
26724699 TAAACTGAAGCTTAAAAG
66 TAAACTGAAGCTTAAAAG
* *
26724717 GCTAAACGGAAACCCATAAGGATTAAACT-GAAGCTCAAAAGAGCTGAACAAAAACCCATAAAGG
1 GCTAAACAGAAACCCATAAGGACTAAA-TGGAAGCTCAAAAGAGCTGAACAAAAACCCATAAAGG
26724781 TTAAACTGAA
65 TTAAACTGAA
26724791 ACTCATATGA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 63 0.98
84 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (83 bp):
GCTAAACAGAAACCCATAAGGACTAAATGGAAGCTCAAAAGAGCTGAACAAAAACCCATAAAGGT
TAAACTGAAGCTTAAAAG
Found at i:26724785 original size:42 final size:42
Alignment explanation
Indices: 26724663--26724795 Score: 171
Period size: 42 Copynumber: 3.2 Consensus size: 42
26724653 GGGCTGAATG
** *
26724663 GAAGCTCGTAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
1 GAAGCTCAAAAGAGCTGAACGGAAACCCATAAAGGTTAAACT
* *
26724705 GAAGCTTAAAAG-GCTAAACGGAAACCCAT-AAGGATTAAACT
1 GAAGCTCAAAAGAGCTGAACGGAAACCCATAAAGG-TTAAACT
**
26724746 GAAGCTCAAAAGAGCTGAACAAAAACCCATAAAGGTTAAACT
1 GAAGCTCAAAAGAGCTGAACGGAAACCCATAAAGGTTAAACT
*
26724788 GAAACTCA
1 GAAGCTCA
26724796 TATGAGTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 3 0.04
41 34 0.44
42 37 0.47
43 4 0.05
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.16
Consensus pattern (42 bp):
GAAGCTCAAAAGAGCTGAACGGAAACCCATAAAGGTTAAACT
Found at i:26724792 original size:21 final size:21
Alignment explanation
Indices: 26724684--26724797 Score: 72
Period size: 21 Copynumber: 5.5 Consensus size: 21
26724674 GAGCTGAACG
*
26724684 GAAACCCATAAGGGTTAAACT
1 GAAACCCATAAAGGTTAAACT
* ** * *
26724705 GAAGCTTA-AAAGGCTAAACG
1 GAAACCCATAAAGGTTAAACT
26724725 GAAACCCAT-AAGGATTAAACT
1 GAAACCCATAAAGG-TTAAACT
* * * * *
26724746 GAAGCTCA-AAAGAGCTGAACA
1 GAAACCCATAAAG-GTTAAACT
*
26724767 AAAACCCATAAAGGTTAAACT
1 GAAACCCATAAAGGTTAAACT
*
26724788 GAAACTCATA
1 GAAACCCATA
26724798 TGAGTTAATA
Statistics
Matches: 64, Mismatches: 24, Indels: 10
0.65 0.24 0.10
Matches are distributed among these distances:
20 18 0.28
21 41 0.64
22 5 0.08
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.17
Consensus pattern (21 bp):
GAAACCCATAAAGGTTAAACT
Found at i:26724914 original size:24 final size:24
Alignment explanation
Indices: 26724882--26724929 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26724872 TACTTGGGTA
26724882 ATTTGCCGTCAATTCATCCTTTGC
1 ATTTGCCGTCAATTCATCCTTTGC
*
26724906 ATTTTCCGTCAATTCATCCTTTGC
1 ATTTGCCGTCAATTCATCCTTTGC
26724930 CATAGAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.29, G:0.10, T:0.44
Consensus pattern (24 bp):
ATTTGCCGTCAATTCATCCTTTGC
Found at i:26725038 original size:45 final size:45
Alignment explanation
Indices: 26724988--26725074 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
26724978 TTTTCAATTC
* * * * *
26724988 ATAATTTAACAATATTTCATTTTTTAACAATATGCTAAATACATA
1 ATAATTTAACAACATTCCATTTTTCAAAAATATACTAAATACATA
*
26725033 ATAATTTAACAACATTCCATTTTTCAAAAATATATTAAATAC
1 ATAATTTAACAACATTCCATTTTTCAAAAATATACTAAATAC
26725075 GTAACATCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.40
Consensus pattern (45 bp):
ATAATTTAACAACATTCCATTTTTCAAAAATATACTAAATACATA
Found at i:26727198 original size:17 final size:18
Alignment explanation
Indices: 26727161--26727199 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
26727151 TAAATCTAAA
26727161 TAAAACTATTAAGTATAC
1 TAAAACTATTAAGTATAC
* *
26727179 TAAAACT-TTAATTATCC
1 TAAAACTATTAAGTATAC
26727196 TAAA
1 TAAA
26727200 CAAAAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36
Consensus pattern (18 bp):
TAAAACTATTAAGTATAC
Found at i:26752382 original size:30 final size:30
Alignment explanation
Indices: 26752346--26752406 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
26752336 ACTGTAGGGG
26752346 TCACACGGCAATGTGGCCAGGCCGTGTGAC
1 TCACACGGCAATGTGGCCAGGCCGTGTGAC
*
26752376 TCACACGGCAATGTGGCCAGGCTGTGTGAC
1 TCACACGGCAATGTGGCCAGGCCGTGTGAC
26752406 T
1 T
26752407 TACGCGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (30 bp):
TCACACGGCAATGTGGCCAGGCCGTGTGAC
Found at i:26770639 original size:39 final size:39
Alignment explanation
Indices: 26770599--26770775 Score: 246
Period size: 39 Copynumber: 4.5 Consensus size: 39
26770589 ATTCACTTTT
* * *
26770599 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
26770638 AAGCATATATCACAATACTCATATAATTACATAACGTTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * * *
26770677 AAGCATATGTCGCAATACTCATATGATTACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
26770716 AAGCATATATCGCAATACTTATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
26770755 AAGCATATGTCACAATACTCA
1 AAGCATATATCACAATACTCA
26770776 AAAACATGTT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 122 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:26792938 original size:10 final size:10
Alignment explanation
Indices: 26792922--26792969 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
26792912 ATAGATATCT
26792922 TAAAAAATTA
1 TAAAAAATTA
*
26792932 TAGAAAATTA
1 TAAAAAATTA
* *
26792942 TTAAAAATCA
1 TAAAAAATTA
*
26792952 TAAAAAAGTA
1 TAAAAAATTA
26792962 TAAAAAAT
1 TAAAAAAT
26792970 AGTAAAATTG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:26792975 original size:20 final size:19
Alignment explanation
Indices: 26792922--26792976 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
26792912 ATAGATATCT
* *
26792922 TAAAAAATTATAGAAAATTA
1 TAAAAAA-TATAAAAAAGTA
*
26792942 TTAAAAATCATAAAAAAGTA
1 TAAAAAAT-ATAAAAAAGTA
26792962 TAAAAAATAGTAAAA
1 TAAAAAATA-TAAAA
26792977 TTGTTCTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.25
Consensus pattern (19 bp):
TAAAAAATATAAAAAAGTA
Found at i:26800126 original size:20 final size:19
Alignment explanation
Indices: 26800101--26800155 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
26800091 AGATTATTTG
26800101 CACTTCTGTGTCTCTTCTTA
1 CACTTC-GTGTCTCTTCTTA
*
26800121 CACTTCGATGCCTCTTCTTA
1 CACTTCG-TGTCTCTTCTTA
26800141 CACTTCGGTGTCTCT
1 CACTTC-GTGTCTCT
26800156 GTTAAAACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.11, C:0.33, G:0.13, T:0.44
Consensus pattern (19 bp):
CACTTCGTGTCTCTTCTTA
Found at i:26800206 original size:40 final size:40
Alignment explanation
Indices: 26800094--26800245 Score: 114
Period size: 40 Copynumber: 3.8 Consensus size: 40
26800084 TTACGATAGA
* * *
26800094 TTATTTGCACTTCTGTGTCTCTT-CTTACACTTCGATGCCT
1 TTATTTGCACTTCGGTGCCT-TTGCTTACACTTTGATGCCT
* * * * *
26800134 CTT-CTTACACTTCGGTGTCTCTG-TTAAAACTTTGATGCCT
1 -TTATTTGCACTTCGGTGCCTTTGCTT-ACACTTTGATGCCT
* * *
26800174 TTATTTGCACTTCAGTGCCTTTGCTTACACTTTGGTGTCT
1 TTATTTGCACTTCGGTGCCTTTGCTTACACTTTGATGCCT
* **
26800214 TTGATTT-CACTTTGGTGCCTTTATTTACACTT
1 TT-ATTTGCACTTCGGTGCCTTTGCTTACACTT
26800246 CGGTGCATCT
Statistics
Matches: 88, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
39 5 0.06
40 75 0.85
41 8 0.09
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.47
Consensus pattern (40 bp):
TTATTTGCACTTCGGTGCCTTTGCTTACACTTTGATGCCT
Found at i:26800280 original size:60 final size:60
Alignment explanation
Indices: 26800118--26800298 Score: 229
Period size: 60 Copynumber: 3.0 Consensus size: 60
26800108 GTGTCTCTTC
* * * ** *
26800118 TTACACTTCGATGCCTCTTCTTACACTTCGGTGTCTCTG-TTAAAACTTTGATGCCTTTAT
1 TTACACTTCGGTGCCTCTGCTTACACTTTGGTGTCTCTGATT-TCACTTTGGTGCCTTTAT
* * * *
26800178 TTGCACTTCAGTGCCTTTGCTTACACTTTGGTGTCTTTGATTTCACTTTGGTGCCTTTAT
1 TTACACTTCGGTGCCTCTGCTTACACTTTGGTGTCTCTGATTTCACTTTGGTGCCTTTAT
* * *
26800238 TTACACTTCGGTGCATCTGCTTACACTTTGGTGTCTCTGATTTCACTTCGGTGCCTCTAT
1 TTACACTTCGGTGCCTCTGCTTACACTTTGGTGTCTCTGATTTCACTTTGGTGCCTTTAT
26800298 T
1 T
26800299 AGCACTAAGG
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 101 0.98
61 2 0.02
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.45
Consensus pattern (60 bp):
TTACACTTCGGTGCCTCTGCTTACACTTTGGTGTCTCTGATTTCACTTTGGTGCCTTTAT
Found at i:26800304 original size:20 final size:20
Alignment explanation
Indices: 26800118--26800314 Score: 105
Period size: 20 Copynumber: 9.8 Consensus size: 20
26800108 GTGTCTCTTC
* **
26800118 TTACACTTCGATGCCTCTTC
1 TTACACTTCGGTGCCTCTGA
*
26800138 TTACACTTCGGTGTCTCTG-
1 TTACACTTCGGTGCCTCTGA
* * * *
26800157 TTAAAACTTTGATGCCT-TTA
1 TT-ACACTTCGGTGCCTCTGA
* * * *
26800177 TTTGCACTTCAGTGCCTTTGC
1 -TTACACTTCGGTGCCTCTGA
* * *
26800198 TTACACTTTGGTGTCTTTGA
1 TTACACTTCGGTGCCTCTGA
* * *
26800218 TTTCACTTTGGTGCCT-TTA
1 TTACACTTCGGTGCCTCTGA
* *
26800237 TTTACACTTCGGTGCATCTGC
1 -TTACACTTCGGTGCCTCTGA
* *
26800258 TTACACTTTGGTGTCTCTGA
1 TTACACTTCGGTGCCTCTGA
*
26800278 TTTCACTTCGGTGCCTCT-A
1 TTACACTTCGGTGCCTCTGA
**
26800297 TTAGCACTAAGGTGCCTC
1 TTA-CACTTCGGTGCCTC
26800315 CGTATAGCAT
Statistics
Matches: 132, Mismatches: 38, Indels: 14
0.72 0.21 0.08
Matches are distributed among these distances:
19 8 0.06
20 120 0.91
21 4 0.03
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.43
Consensus pattern (20 bp):
TTACACTTCGGTGCCTCTGA
Found at i:26800311 original size:60 final size:60
Alignment explanation
Indices: 26800195--26800311 Score: 173
Period size: 60 Copynumber: 1.9 Consensus size: 60
26800185 TCAGTGCCTT
* * * **
26800195 TGCTTACACTTTGGTGTCTTTGATTTCACTTTGGTGCCTTTATTTACACTTCGGTGCATC
1 TGCTTACACTTTGGTGTCTCTGATTTCACTTCGGTGCCTCTATTTACACTAAGGTGCATC
26800255 TGCTTACACTTTGGTGTCTCTGATTTCACTTCGGTGCCTCTA-TTAGCACTAAGGTGC
1 TGCTTACACTTTGGTGTCTCTGATTTCACTTCGGTGCCTCTATTTA-CACTAAGGTGC
26800312 CTCCGTATAG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 3 0.06
60 48 0.94
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (60 bp):
TGCTTACACTTTGGTGTCTCTGATTTCACTTCGGTGCCTCTATTTACACTAAGGTGCATC
Found at i:26803460 original size:11 final size:11
Alignment explanation
Indices: 26803446--26803487 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
26803436 TAAATATTAC
26803446 TTTATTAATAT
1 TTTATTAATAT
*
26803457 TTTAATGAGATAT
1 TTT-ATTA-ATAT
26803470 TTTATTAATAT
1 TTTATTAATAT
26803481 TTTATTA
1 TTTATTA
26803488 TAAATAGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TTTATTAATAT
Found at i:26803536 original size:15 final size:15
Alignment explanation
Indices: 26803512--26803541 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26803502 AAAAGGAGAG
*
26803512 AAAGATGAAGAAAGA
1 AAAGAAGAAGAAAGA
26803527 AAAGAAGAAGAAAGA
1 AAAGAAGAAGAAAGA
26803542 TGATCCTCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (15 bp):
AAAGAAGAAGAAAGA
Found at i:26807022 original size:22 final size:22
Alignment explanation
Indices: 26806992--26807033 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26806982 ACAGCAGAAC
*
26806992 AGGCTTTTAGCAGCACTTTTTT
1 AGGCCTTTAGCAGCACTTTTTT
* *
26807014 AGGCCTTTAGCGGCGCTTTT
1 AGGCCTTTAGCAGCACTTTT
26807034 AAGCGCCGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.14, C:0.21, G:0.24, T:0.40
Consensus pattern (22 bp):
AGGCCTTTAGCAGCACTTTTTT
Found at i:26807265 original size:43 final size:42
Alignment explanation
Indices: 26807193--26807290 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
26807183 AGACAAATAC
* *
26807193 CTTTAGCGGCGCTTTAGTGGAAGCGCCGCTAAAGATCAGGGT
1 CTTTAGCAGCGCTTTAGTGGAAACGCCGCTAAAGATCAGGGT
* * **
26807235 CTTTAGCAGCGTTTTTGTGGGAAACGCCGCTAAAGATTGGGGT
1 CTTTAGCAGCGCTTTAGT-GGAAACGCCGCTAAAGATCAGGGT
*
26807278 CTTTAGCGGCGCT
1 CTTTAGCAGCGCT
26807291 CTTACTACAA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 15 0.32
43 32 0.68
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (42 bp):
CTTTAGCAGCGCTTTAGTGGAAACGCCGCTAAAGATCAGGGT
Found at i:26807508 original size:43 final size:43
Alignment explanation
Indices: 26807277--26807570 Score: 206
Period size: 43 Copynumber: 6.8 Consensus size: 43
26807267 AAGATTGGGG
* * * *
26807277 TCTTTAGCGGCGCTCTTACTACAAACGCCGC-AATAGACCCTGA
1 TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTAA-AGACCATGA
* * * *
26807320 TCTATAGCGGCGCATTTT-CTAAAAATGCCG-TAATAGA-CACCGA
1 TCTTTAGCGGCGC-TTTTACCAAAAACGCCGCTAA-AGACCA-TGA
* * * *
26807363 TCTATAGCGGCGCTTTTACAAAAAACGCCGC-AGTAGACCCTGA
1 TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTA-AAGACCATGA
* ** * * * *
26807406 TCTATAGCGGCGCTTCGGA-TAAAAACGCCACTAAAGATCATGG
1 TCTTTAGCGGCGCTT-TTACCAAAAACGCCGCTAAAGACCATGA
*
26807449 TCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGACCATGA
1 TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCATGA
* * * * * **
26807492 TCTTTAGTGGCGCTTTTTCCACAAACGCCGGTAAATAACC-TTC
1 TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTAAA-GACCATGA
* * *
26807535 TCTTTAGCTGCACTTTTACCAAAAACGCCACTAAAG
1 TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTAAAG
26807571 GCCAACACCT
Statistics
Matches: 198, Mismatches: 42, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
42 5 0.03
43 184 0.93
44 9 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCATGA
Found at i:26807518 original size:86 final size:85
Alignment explanation
Indices: 26807256--26807563 Score: 260
Period size: 86 Copynumber: 3.6 Consensus size: 85
26807246 TTTTTGTGGG
*** * * * *
26807256 AAACGCCGCTAAAGATTGGGGTCTTTAGCGGCGCTCTTACTACAAACGCCGCAATAGACCCTGAT
1 AAACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTACCAAAAACGCCGCAA-AGACCATGAT
*
26807321 CTATAGCGGCGCATTTTCTAA
65 CTATAGCGGCGCTTTTTCTAA
* * * * * * *
26807342 AAATGCCG-TAATAGA-CACCGATCTATAGCGGCGCTTTTACAAAAAACGCCGCAGTAGACCCTG
1 AAACGCCGCTAA-AGATCA-TGGTCTTTAGCGGCGCTTTTACCAAAAACGCCGCA-AAGACCATG
****
26807405 ATCTATAGCGGCGCTTCGGATAA
63 ATCTATAGCGGCGCTTTTTCTAA
* *
26807428 AAACGCCACTAAAGATCATGGTCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGACCATGAT
1 AAACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTACCAAAAACGCCGC-AAAGACCATGAT
* * * *
26807493 CTTTAGTGGCGCTTTTTCCAC
65 CTATAGCGGCGCTTTTTCTAA
* * * * ** * *
26807514 AAACGCCGGTAAATAACCTTCTCTTTAGCTGCACTTTTACCAAAAACGCC
1 AAACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTACCAAAAACGCC
26807564 ACTAAAGGCC
Statistics
Matches: 174, Mismatches: 42, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
85 3 0.02
86 165 0.95
87 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (85 bp):
AAACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTACCAAAAACGCCGCAAAGACCATGATC
TATAGCGGCGCTTTTTCTAA
Found at i:26807992 original size:21 final size:21
Alignment explanation
Indices: 26807921--26808001 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 21
26807911 TTTGACGCTG
* *
26807921 CTCTGCTTACCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
* *
26807942 CTCTACTTGCCTCGCTACAGC
1 CTCTACTTCCCTCGCTGCAGC
*
26807963 CTCTGCTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
* * *
26807984 CTGTACTTCTCTCACTGC
1 CTCTACTTCCCTCGCTGC
26808002 CGCATCTGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.10, C:0.43, G:0.16, T:0.31
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:26808010 original size:42 final size:42
Alignment explanation
Indices: 26807922--26808013 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
26807912 TTGACGCTGC
* * *
26807922 TCTGCTTACCTCGCTGCAGCCTCTACTTGCCTCGCTACAGCC
1 TCTGCTTCCCTCGCTGCAGCCTCTACTTGCCTCACTACAGCA
* * *
26807964 TCTGCTTCCCTCGCTGCAGCCTGTACTT-CTCTCACTGCCGCA
1 TCTGCTTCCCTCGCTGCAGCCTCTACTTGC-CTCACTACAGCA
26808006 TCTGCTTC
1 TCTGCTTC
26808014 TCTTACTGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 42 0.98
ACGTcount: A:0.10, C:0.42, G:0.16, T:0.32
Consensus pattern (42 bp):
TCTGCTTCCCTCGCTGCAGCCTCTACTTGCCTCACTACAGCA
Found at i:26808013 original size:21 final size:21
Alignment explanation
Indices: 26807989--26808032 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
26807979 GCAGCCTGTA
26807989 CTTCTCTCACTGCCGCATCTG
1 CTTCTCTCACTGCCGCATCTG
*
26808010 CTTCTCTTACTGCCGCATCTG
1 CTTCTCTCACTGCCGCATCTG
26808031 CT
1 CT
26808033 CTAAGCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.41, G:0.14, T:0.36
Consensus pattern (21 bp):
CTTCTCTCACTGCCGCATCTG
Found at i:26808098 original size:66 final size:66
Alignment explanation
Indices: 26808024--26808150 Score: 220
Period size: 66 Copynumber: 1.9 Consensus size: 66
26808014 TCTTACTGCC
*
26808024 GCATCTGCTCTAAGCTGTTGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGTTG
1 GCATCTGCTCTAAGCTGCTGCTGGAGTTCTTCATATCTTT-GTTGAACCTCAGCTTCTCTCGTTG
26808088 CT
65 CT
*
26808090 GCATCTGCTCTAAGCTGCTGCTGGAGTTCTTCATATCTTTTTTGAACCTCAGCTTCTCTCG
1 GCATCTGCTCTAAGCTGCTGCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCG
26808151 ATGTTGCCTC
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
66 54 0.93
67 4 0.07
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.39
Consensus pattern (66 bp):
GCATCTGCTCTAAGCTGCTGCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCGTTGC
T
Found at i:26813622 original size:16 final size:16
Alignment explanation
Indices: 26813601--26813634 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26813591 ATAGTTAAGC
26813601 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
26813617 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
26813633 TA
1 TA
26813635 CCCAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:26813666 original size:25 final size:25
Alignment explanation
Indices: 26813615--26813670 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26813605 TAAGTTATGT
* *
26813615 ATTATGTAAGTTATTTATTACCCAA
1 ATTATGTAAGTTATGTATTACCAAA
* **
26813640 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATGTATTACCAAA
26813665 ATTATG
1 ATTATG
26813671 CTATGTAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTACCAAA
Found at i:26813684 original size:9 final size:9
Alignment explanation
Indices: 26813672--26813813 Score: 68
Period size: 9 Copynumber: 16.7 Consensus size: 9
26813662 AAAATTATGC
26813672 TATGTAAGT
1 TATGTAAGT
26813681 TATGTAAGT
1 TATGTAAGT
* **
26813690 CACATAAGT
1 TATGTAAGT
26813699 TATGTAAG-
1 TATGTAAGT
* * *
26813707 -AAGTTATT
1 TATGTAAGT
26813715 TATGTAAGT
1 TATGTAAGT
*
26813724 TAT-TTA-T
1 TATGTAAGT
* *
26813731 TATGAAAAT
1 TATGTAAGT
*
26813740 TAAGTAAGT
1 TATGTAAGT
*
26813749 TATGTAATT
1 TATGTAAGT
*
26813758 TACG-AA-T
1 TATGTAAGT
* **
26813765 AAT-TAAAAA
1 TATGT-AAGT
*
26813774 AATGTAAGT
1 TATGTAAGT
26813783 TATGTAAG-
1 TATGTAAGT
26813791 T-TGTAAGT
1 TATGTAAGT
26813799 TATGTAAGT
1 TATGTAAGT
26813808 TATGTA
1 TATGTA
26813814 TAATATTAAT
Statistics
Matches: 96, Mismatches: 27, Indels: 20
0.67 0.19 0.14
Matches are distributed among these distances:
7 16 0.17
8 9 0.09
9 70 0.73
10 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (9 bp):
TATGTAAGT
Found at i:26813797 original size:16 final size:16
Alignment explanation
Indices: 26813776--26813808 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26813766 ATTAAAAAAA
26813776 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26813792 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26813808 T
1 T
26813809 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:26813836 original size:34 final size:34
Alignment explanation
Indices: 26813794--26814002 Score: 252
Period size: 34 Copynumber: 6.3 Consensus size: 34
26813784 ATGTAAGTTG
*
26813794 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* * *
26813828 TAACTTATGTAATTTAAGTATAATATTAA-T--G
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* *
26813859 TAAGTTATGTAATTAATGTATAATATTAATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* *
26813893 TAAGTCATGTAATTTATGTATAATATTAA-T-GC
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* *
26813925 -AAGTTATGTAATATATGTATAATATTAATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* *
26813958 TAAGTTATGTAATTTATGTATAATACTAAATAA-
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
26813991 TCAAGTTATGTA
1 T-AAGTTATGTA
26814003 TAATATTAAT
Statistics
Matches: 149, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
31 52 0.35
32 2 0.01
33 3 0.02
34 92 0.62
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (34 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAAC
Found at i:26813851 original size:84 final size:84
Alignment explanation
Indices: 26813694--26813851 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
26813684 GTAAGTCACA
* * * * * *
26813694 TAAGTTATGTAAGAAGTTATTTATGTAAGTTATTTATTATGAAAATTAAGTAAGTTATGTAATTT
1 TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGAAAATTAACTAACTTATGTAATTT
*
26813759 ACGAATAATTAAAAAAATG
66 AAGAATAATTAAAAAAATG
** *
26813778 TAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAAT-ATTAATTAACTAACTTATGTAATT
1 TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGA-AAATTAACTAACTTATGTAATT
*
26813842 TAAGTATAAT
65 TAAGAATAAT
26813852 ATTAATGTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
83 1 0.02
84 61 0.98
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (84 bp):
TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGAAAATTAACTAACTTATGTAATTT
AAGAATAATTAAAAAAATG
Found at i:26813861 original size:65 final size:64
Alignment explanation
Indices: 26813792--26813982 Score: 310
Period size: 65 Copynumber: 2.9 Consensus size: 64
26813782 TTATGTAAGT
* * *
26813792 TGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAA
1 TGTAAGTTATGTAA-TTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
*
26813857 TGTAAGTTATGTAATTAATGTATAATATTAATTAATTAAGTCATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTAATT-ATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
*
26813922 TGCAAGTTATGTAATATATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATA
1 TGTAAGTTATGTAAT-TATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATA
26813983 CTAAATAATC
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
64 2 0.02
65 115 0.97
66 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (64 bp):
TGTAAGTTATGTAATTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
Found at i:26813903 original size:99 final size:98
Alignment explanation
Indices: 26813794--26814002 Score: 269
Period size: 99 Copynumber: 2.1 Consensus size: 98
26813784 ATGTAAGTTG
*
26813794 TAAGTTATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAA-T
1 TAAGTTATGTAAGTTATGTATAATATTAA-T-AC-AACTTATGTAATATAAGTATAATATTAATT
* *
26813858 -GTAAGTTATGTAATTAATGTATAATATTAATTAAT
63 AGTAAGTTATGTAATTAATGTATAATACTAAATAAT
* * * * * *
26813893 TAAGTCATGTAATTTATGTATAATATTAATGCAAGTTATGTAATATATGTATAATATTAATTAAT
1 TAAGTTATGTAAGTTATGTATAATATTAATACAACTTATGTAATATAAGTATAATATTAATT-AG
*
26813958 TAAGTTATGTAATTTATGTATAATACTAAATAAT
65 TAAGTTATGTAATTAATGTATAATACTAAATAAT
*
26813992 CAAGTTATGTA
1 TAAGTTATGTA
26814003 TAATATTAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
96 25 0.26
97 2 0.02
98 1 0.01
99 67 0.71
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (98 bp):
TAAGTTATGTAAGTTATGTATAATATTAATACAACTTATGTAATATAAGTATAATATTAATTAGT
AAGTTATGTAATTAATGTATAATACTAAATAAT
Found at i:26814916 original size:18 final size:19
Alignment explanation
Indices: 26814878--26814922 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
26814868 AGAAATTGGG
*
26814878 AACCCCTAGCTAAATCCTA
1 AACCCCTAGCTAAACCCTA
26814897 AACCCCTAGCT-AACCCTA
1 AACCCCTAGCTAAACCCTA
*
26814915 AATCCCTA
1 AACCCCTA
26814923 ACCCCTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.36, C:0.40, G:0.04, T:0.20
Consensus pattern (19 bp):
AACCCCTAGCTAAACCCTA
Found at i:26815671 original size:113 final size:113
Alignment explanation
Indices: 26815472--26816182 Score: 911
Period size: 113 Copynumber: 6.3 Consensus size: 113
26815462 AGATAAAATG
* * * * * *
26815472 TTTTTGCGGCGCTTTATAAAAAACGCCGCTAAAGGCATCAGCATTAGCGGCGCTTATTCA-GAAA
1 TTTTTGCGGCGCTTT-TAAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTT-TACATAAAA
*
26815536 CGCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGTCGTTGGGCTTAGGC
64 CGCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
*
26815586 -TTTTGCGGCGCATTTTAAAAAACTCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATAAAAC
1 TTTTTGCGGCGC-TTTTAAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATAAAAC
* *
26815650 GCCACTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGTTTAGGC
65 GCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
* * **
26815699 TTTTTGCGGCGCTTTTGAAAAAACGCCGCTAAAGACCTCAACATTAGCGACGCTTT--ATAGATG
1 TTTTTGCGGCGCTTTT-AAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATA-AAA
* *
26815762 CACCGCTAAAGACCCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGT
64 CGCCGCTAAAGA-CCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
** ** *
26815813 TTTTTGCGGCGCAATTAAAAAACATCGCTAAAGACCTGAACATTAGCGGCGCTTTACAT-AAACA
1 TTTTTGCGGCGCTTTTAAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATAAAACG
* * *
26815877 CCGCGAAAGACCCCAAAAACTCAAAAAACGGTGCCGTTGAGCTTAGGC
66 CCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
* * * *
26815925 TTTTTGC-GCGCTTTAAAAAAAACGCCGCTAAAGACATGAGCATTAGCGGCACTTTACATAAAAC
1 TTTTTGCGGCGCTTT-TAAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATAAAAC
* * * * *
26815989 GCCACTAAAGACCCC-AAAACTTAGAAAACGGTGTCGTTGGGTTTAGAC
65 GCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
*
26816037 TTTTTGCGGCGCTTTTAAAACAACGCCGCTAAAGACCT-AAGCATTAGCGGCGCTTTTACA-GAA
1 TTTTTGCGGCGCTTTTAAAA-AACGCCGCTAAAGACCTGAA-CATTAGCGGCGC-TTTACATAAA
* * *
26816100 ACGCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGTCGTTTGTCTTTA-GC
63 ACGCCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGC-TTAGGC
26816151 TTTTTGCGGCGCTTTTATAAAAACGCCGCTAA
1 TTTTTGCGGCGCTTTTA-AAAAACGCCGCTAA
26816183 TGCTTATTTT
Statistics
Matches: 521, Mismatches: 59, Indels: 34
0.85 0.10 0.06
Matches are distributed among these distances:
111 5 0.01
112 125 0.24
113 225 0.43
114 158 0.30
115 8 0.02
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (113 bp):
TTTTTGCGGCGCTTTTAAAAAACGCCGCTAAAGACCTGAACATTAGCGGCGCTTTACATAAAACG
CCGCTAAAGACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC
Found at i:26824161 original size:6 final size:6
Alignment explanation
Indices: 26824150--26824201 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
26824140 GCTGTCACCT
26824150 GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG
1 GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG GCTCGG
26824198 GCTC
1 GCTC
26824202 CGACCCCTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.00, C:0.35, G:0.48, T:0.17
Consensus pattern (6 bp):
GCTCGG
Found at i:26824393 original size:25 final size:25
Alignment explanation
Indices: 26824364--26824413 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26824354 TTTAAAAAAA
* *
26824364 TAAATATAT-TAATTTATTTTTATAT
1 TAAATAAATATAA-TTATTTATATAT
26824389 TAAATAAATATAATTATTTATATAT
1 TAAATAAATATAATTATTTATATAT
26824414 CTAATATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TAAATAAATATAATTATTTATATAT
Found at i:26828434 original size:21 final size:20
Alignment explanation
Indices: 26828410--26828460 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 20
26828400 ATTCATAACA
*
26828410 TATTCAATTCTCATCACTTGC
1 TATTCAAATCTCAT-ACTTGC
*
26828431 TATTTCAAATCTCATATTTGC
1 TA-TTCAAATCTCATACTTGC
26828452 TATTCAAAT
1 TATTCAAAT
26828461 AGTTTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 11 0.41
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (20 bp):
TATTCAAATCTCATACTTGC
Found at i:26829651 original size:17 final size:18
Alignment explanation
Indices: 26829619--26829654 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
26829609 GAAACCCTGG
26829619 CTTTTTCTCCTTTCTTTCT
1 CTTTTTCT-CTTTCTTTCT
26829638 CTTTTTCT-TTTCTTTCT
1 CTTTTTCTCTTTCTTTCT
26829655 TTCCTTCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTTCTCTTTCTTTCT
Found at i:26829760 original size:21 final size:22
Alignment explanation
Indices: 26829708--26829760 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
26829698 TTCTATTTCT
*
26829708 TTATTTGTTTTGTTTTAATTAC
1 TTATTTATTTTGTTTTAATTAC
26829730 TTATTTATTTTGTTTT-ATTA-
1 TTATTTATTTTGTTTTAATTAC
26829750 TTATTTCATTT
1 TTATTT-ATTT
26829761 ACTTTGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 6 0.21
21 8 0.28
22 15 0.52
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.72
Consensus pattern (22 bp):
TTATTTATTTTGTTTTAATTAC
Found at i:26832287 original size:98 final size:99
Alignment explanation
Indices: 26832112--26832306 Score: 320
Period size: 98 Copynumber: 2.0 Consensus size: 99
26832102 TAAGTAAAGA
* * *
26832112 ATTTGAGATGAAAGGTTTGGGACCAGCAAAGAAGATACTTAGTATGAAGATTCTCAGAGATAGAA
1 ATTTGAGATAAAAGATTTGGGACCAGCAAAGAAGATACTTAGTATAAAGATTCTCAGAGATAGAA
* *
26832177 AAGAAAGTAAATTGTACCTAAGTCA-AAAGGGGT
66 AAGAAAGCAAATTGCACCTAAGTCAGAAAGGGGT
*
26832210 ATTTGAGATAAAAGATTTGGGACCAGCAAAGAAGATACTTGGTATAAAGATTCTCAGAGATAGAA
1 ATTTGAGATAAAAGATTTGGGACCAGCAAAGAAGATACTTAGTATAAAGATTCTCAGAGATAGAA
*
26832275 AAGTAAGCAAATTGCACCTAAGTCAGAAAGGG
66 AAGAAAGCAAATTGCACCTAAGTCAGAAAGGG
26832307 TACATTGAGA
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
98 83 0.93
99 6 0.07
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.23
Consensus pattern (99 bp):
ATTTGAGATAAAAGATTTGGGACCAGCAAAGAAGATACTTAGTATAAAGATTCTCAGAGATAGAA
AAGAAAGCAAATTGCACCTAAGTCAGAAAGGGGT
Found at i:26839787 original size:24 final size:24
Alignment explanation
Indices: 26839755--26839802 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26839745 GAGTATAACC
26839755 CAATCTACCAAGGATAAAGCTAGG
1 CAATCTACCAAGGATAAAGCTAGG
26839779 CAATCTACCAAGGATAAAGCTAGG
1 CAATCTACCAAGGATAAAGCTAGG
26839803 ATTAGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (24 bp):
CAATCTACCAAGGATAAAGCTAGG
Found at i:26841824 original size:29 final size:29
Alignment explanation
Indices: 26841729--26841825 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
26841719 AAACTACTCC
*
26841729 ACACTAGGTTGCTCGTCCAAGCTAAAATT
1 ACACTAGGTTGCTAGTCCAAGCTAAAATT
* * * *
26841758 TCA-TAAGGTTGCTAGTCTAGGCTAAAAGT
1 ACACT-AGGTTGCTAGTCCAAGCTAAAATT
* * *
26841787 ATACAAGGTTGCTTGTCCAAGCTAAAATT
1 ACACTAGGTTGCTAGTCCAAGCTAAAATT
26841816 ACACTAGGTT
1 ACACTAGGTT
26841826 AGGTTACTAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
28 1 0.02
29 51 0.98
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (29 bp):
ACACTAGGTTGCTAGTCCAAGCTAAAATT
Found at i:26850806 original size:3 final size:3
Alignment explanation
Indices: 26850798--26850834 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26850788 ATGAAAGACC
26850798 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
26850835 GAAAATATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26857266 original size:16 final size:15
Alignment explanation
Indices: 26857245--26857274 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26857235 AAGATATTAG
26857245 AAGTTGAAAGTGAAAA
1 AAGTTGAAAG-GAAAA
26857261 AAGTTGAAAGGAAA
1 AAGTTGAAAGGAAA
26857275 GTGAAAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (15 bp):
AAGTTGAAAGGAAAA
Found at i:26859041 original size:26 final size:27
Alignment explanation
Indices: 26858998--26859048 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
26858988 GACCAAAATT
*
26858998 AAATATAAAATAAATTAAAGATATAGA
1 AAATATAAAATAAATTAAAAATATAGA
**
26859025 AAATA-AAAATAGTTTAAAAATATA
1 AAATATAAAATAAATTAAAAATATA
26859049 TTAAAAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATATAAAATAAATTAAAAATATAGA
Found at i:26861212 original size:26 final size:27
Alignment explanation
Indices: 26861169--26861219 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
26861159 GACCAAAATT
*
26861169 AAATATAAAATAAATTAAAGATATAGA
1 AAATATAAAATAAATTAAAAATATAGA
**
26861196 AAATA-AAAATAGTTTAAAAATATA
1 AAATATAAAATAAATTAAAAATATA
26861220 TTAAAAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATATAAAATAAATTAAAAATATAGA
Found at i:26863906 original size:16 final size:16
Alignment explanation
Indices: 26863885--26863919 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26863875 AGTTAAAAAT
*
26863885 TATTTAAATTATATAA
1 TATTTAAATAATATAA
*
26863901 TATTTAAATAATTTAA
1 TATTTAAATAATATAA
26863917 TAT
1 TAT
26863920 AATGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTTAAATAATATAA
Found at i:26866704 original size:35 final size:34
Alignment explanation
Indices: 26866665--26866752 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 34
26866655 TATTCATTAG
*
26866665 AAAAAAT-ATATAAATATATACATGTACATATATAA
1 AAAAAATAAT-TAAATATATACATATACAT-TATAA
* * *
26866700 AAAAAATAATTATATATATATATATAGATTAT-A
1 AAAAAATAATTAAATATATACATATACATTATAA
*
26866733 AAAAAATAATTACATATATA
1 AAAAAATAATTAAATATATA
26866753 TAAAAATAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 20 0.43
34 3 0.06
35 22 0.47
36 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (34 bp):
AAAAAATAATTAAATATATACATATACATTATAA
Found at i:26866716 original size:33 final size:33
Alignment explanation
Indices: 26866678--26866750 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
26866668 AAATATATAA
* *
26866678 ATATATACATGTACATA-TATAAAAAAAATAATT
1 ATATATACATATACAGATTAT-AAAAAAATAATT
* *
26866711 ATATATATATATATAGATTATAAAAAAATAATT
1 ATATATACATATACAGATTATAAAAAAATAATT
*
26866744 ACATATA
1 ATATATA
26866751 TATAAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (33 bp):
ATATATACATATACAGATTATAAAAAAATAATT
Found at i:26866791 original size:26 final size:26
Alignment explanation
Indices: 26866689--26866777 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 26
26866679 TATATACATG
*
26866689 TACATATATA-AAAAA-AATAATTAT
1 TACATATATATAAAAATAATAATAAT
* *
26866713 ATATATATATATAGATTATAA-AAAAATAAT
1 -TACATATATATA-A--A-AATAATAATAAT
26866743 TACATATATATAAAAATAATAATAAT
1 TACATATATATAAAAATAATAATAAT
26866769 TACATATAT
1 TACATATAT
26866778 TGAAATTAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
25 11 0.21
26 19 0.36
27 1 0.02
28 1 0.02
29 12 0.23
30 9 0.17
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (26 bp):
TACATATATATAAAAATAATAATAAT
Found at i:26867135 original size:3 final size:3
Alignment explanation
Indices: 26867129--26867164 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26867119 GTAGTAGTAG
26867129 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26867165 CTTAATAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26867764 original size:10 final size:9
Alignment explanation
Indices: 26867738--26867778 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
26867728 TTCTTGTTAC
26867738 AAAAT-AAA
1 AAAATAAAA
*
26867746 ATAATAAAA
1 AAAATAAAA
26867755 AAAATAAAA
1 AAAATAAAA
26867764 AAAATAAAA
1 AAAATAAAA
26867773 AAAATA
1 AAAATA
26867779 GACGCGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 4 0.13
9 26 0.87
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAATAAAA
Found at i:26868790 original size:44 final size:43
Alignment explanation
Indices: 26868731--26868847 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
26868721 GATGTGATCT
* * * * *
26868731 ACTCTACTACAACTTTAGAGAGGTAAGA-TATTTGGTTTTAATCC
1 ACTCCACTGCAACTTTAGGGAGATAAGATTA-TTGGCTTT-ATCC
* *
26868775 ACTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTATCT
1 ACTCCACTGCAACTTTAGGGAGATAAGATTATTGGCTTTATCC
*
26868818 ACTCCACTGCAACTTCAGGGAGATAAGATT
1 ACTCCACTGCAACTTTAGGGAGATAAGATT
26868848 TGCCATCTTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 31 0.49
44 30 0.48
45 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTCCACTGCAACTTTAGGGAGATAAGATTATTGGCTTTATCC
Found at i:26868826 original size:43 final size:45
Alignment explanation
Indices: 26868727--26868847 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 45
26868717 ACCCGATGTG
* * * * *
26868727 ATCTACTCTACTACAACTTTAGAGAGGTAAGA-TATTTGGTTTTA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTATTTGGCTTTA
* *
26868771 ATCCACTCCACTGCAACTTTAGGGAGATAGGATTA-TTGGCTTT-
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTATTTGGCTTTA
*
26868814 ATCTACTCCACTGCAACTTCAGGGAGATAAGATT
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATT
26868848 TGCCATCTTC
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
43 31 0.47
44 33 0.50
45 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (45 bp):
ATCTACTCCACTGCAACTTTAGGGAGATAAGATTATTTGGCTTTA
Found at i:26868934 original size:50 final size:50
Alignment explanation
Indices: 26868880--26869069 Score: 152
Period size: 50 Copynumber: 3.8 Consensus size: 50
26868870 TGCAATGTTG
*
26868880 GGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACATCGCCA
1 GGGAAACAAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATCGCCA
** * * * ** * * **
26868930 GGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAAT-G-TG
1 GGGAAACAAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTAC-ATCGCCA
* * * *
26868979 GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAACAAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATCGCCA
** * * *
26869029 -GGAGAGTAAGATTCGCCGTTGCGGCTTTAATCTGTTCCACT
1 GGGA-AACAAGATTCGCCGTCGCAGCTTCAATCTGTTCCACT
26869070 GTAATGCAAA
Statistics
Matches: 101, Mismatches: 35, Indels: 8
0.70 0.24 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.35
50 63 0.62
51 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (50 bp):
GGGAAACAAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATCGCCA
Found at i:26869000 original size:99 final size:100
Alignment explanation
Indices: 26868854--26869061 Score: 339
Period size: 99 Copynumber: 2.1 Consensus size: 100
26868844 GATTTGCCAT
* *
26868854 CTTCAGTCTTTTAAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAAATTGCAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCA
*
26868919 CTACATCGCCAGG-GAAGTAAGATTCGCCGTTGCGG
66 CTACACCGCCAGGAG-AGTAAGATTCGCCGTTGCGG
* *
26868954 CTTCAATCTTTTTAATTGCAATG-TGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAAATTGCAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCA
26869018 CTACACCGCCAGGAGAGTAAGATTCGCCGTTGCGG
66 CTACACCGCCAGGAGAGTAAGATTCGCCGTTGCGG
*
26869053 CTTTAATCT
1 CTTCAATCT
26869062 GTTCCACTGT
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
99 79 0.78
100 22 0.22
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (100 bp):
CTTCAATCTTTTAAATTGCAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCCAGGAGAGTAAGATTCGCCGTTGCGG
Found at i:26869006 original size:49 final size:50
Alignment explanation
Indices: 26868854--26869011 Score: 140
Period size: 50 Copynumber: 3.2 Consensus size: 50
26868844 GATTTGCCAT
* *
26868854 CTTCAGTCTTTTAAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAG
1 CTTCAATCTTTTAAATTGCAATGCTGGGGAAACAAGATTCGCCGTCGTAG
* ** * * ** ** * **
26868904 CTTCAATCTGTTCCACTAC-ATCGCCAGGGAAGTAAGATTCGCCGTTGCGG
1 CTTCAATCTTTTAAATTGCAAT-GCTGGGGAAACAAGATTCGCCGTCGTAG
* * *
26868954 CTTCAATCTTTTTAATTGCAATG-TGGGGAAACGAGATTCACCGTCGTAG
1 CTTCAATCTTTTAAATTGCAATGCTGGGGAAACAAGATTCGCCGTCGTAG
26869003 CTTCAATCT
1 CTTCAATCT
26869012 GTTCCACTAC
Statistics
Matches: 78, Mismatches: 28, Indels: 5
0.70 0.25 0.05
Matches are distributed among these distances:
49 28 0.36
50 48 0.62
51 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (50 bp):
CTTCAATCTTTTAAATTGCAATGCTGGGGAAACAAGATTCGCCGTCGTAG
Done.