Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold5911.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16116
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Found at i:326 original size:34 final size:34
Alignment explanation
Indices: 283--447 Score: 149
Period size: 34 Copynumber: 4.9 Consensus size: 34
273 AAATTAGTAA
*
283 AAAATAGAAATTTTTGGAAATAAAGACAATACTC
1 AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
317 AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
1 AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
* * * ** * ** ** *
351 GATACTTGGGATCTTTGAGAGAAT-TGGGCCCTA-GC
1 -AAAATAGAAATTTTTG-GA-AATAAAGGCAATACTC
*
386 --AATAGAAATTTTTGGAAATAAAGACAATACTC
1 AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
*
418 AAAATAAAAATTTTTGGAAATAAAGGCAAT
1 AAAATAGAAATTTTTGGAAATAAAGGCAAT
448 TCTCGATACT
Statistics
Matches: 99, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
30 3 0.03
31 6 0.06
32 10 0.10
34 59 0.60
35 11 0.11
36 7 0.07
37 3 0.03
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (34 bp):
AAAATAGAAATTTTTGGAAATAAAGGCAATACTC
Found at i:460 original size:101 final size:101
Alignment explanation
Indices: 285--485 Score: 384
Period size: 101 Copynumber: 2.0 Consensus size: 101
275 ATTAGTAAAA
*
285 AATAGAAATTTTTGGAAATAAAGACAATACTCAAAATAGAAATTTTTGGAAATAAAGGCAATACT
1 AATAGAAATTTTTGGAAATAAAGACAATACTCAAAATAAAAATTTTTGGAAATAAAGGCAATACT
350 CGATACTTGGGATCTTTGAGAGAATTGGGCCCTAGC
66 CGATACTTGGGATCTTTGAGAGAATTGGGCCCTAGC
*
386 AATAGAAATTTTTGGAAATAAAGACAATACTCAAAATAAAAATTTTTGGAAATAAAGGCAATTCT
1 AATAGAAATTTTTGGAAATAAAGACAATACTCAAAATAAAAATTTTTGGAAATAAAGGCAATACT
451 CGATACTTGGGATCTTTGAGAGAATTGGGCCCTAG
66 CGATACTTGGGATCTTTGAGAGAATTGGGCCCTAG
486 TGTGCTGGGT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.28
Consensus pattern (101 bp):
AATAGAAATTTTTGGAAATAAAGACAATACTCAAAATAAAAATTTTTGGAAATAAAGGCAATACT
CGATACTTGGGATCTTTGAGAGAATTGGGCCCTAGC
Found at i:3715 original size:17 final size:17
Alignment explanation
Indices: 3695--3739 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
3685 AAAAAAAACC
3695 AAAAACACAAAAAGAAA
1 AAAAACACAAAAAGAAA
3712 AAAAGA-AC-AAAAGAAA
1 AAAA-ACACAAAAAGAAA
3728 AAAAACA-AAAAA
1 AAAAACACAAAAA
3740 CCTCTACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 17 0.68
17 6 0.24
18 1 0.04
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (17 bp):
AAAAACACAAAAAGAAA
Found at i:3728 original size:14 final size:14
Alignment explanation
Indices: 3704--3737 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
3694 CAAAAACACA
3704 AAAAGAAAAAAAGAAC
1 AAAAG-AAAAAA-AAC
3720 AAAAGAAAAAAAAC
1 AAAAGAAAAAAAAC
3734 AAAA
1 AAAA
3738 AACCTCTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAC
Found at i:4189 original size:12 final size:12
Alignment explanation
Indices: 4185--4225 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
4175 AAAAAGAAAC
4185 GAAAAGAAAAAA
1 GAAAAGAAAAAA
4197 GAAAAGAAAAGAA
1 GAAAAGAAAA-AA
*
4210 G-AATGAAAAAA
1 GAAAAGAAAAAA
4221 GAAAA
1 GAAAA
4226 AGGAGAGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:4217 original size:24 final size:22
Alignment explanation
Indices: 4176--4225 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
4166 TTCACTCGAA
*
4176 AAAAGAAACGAAAAGAAAAAAG
1 AAAAGAAAAGAAAAGAAAAAAG
4198 AAAAGAAAAGAAGAATGAAAAAAG
1 AAAAGAAAAGAA-AA-GAAAAAAG
4222 AAAA
1 AAAA
4226 AGGAGAGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.44
23 2 0.08
24 12 0.48
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAGAAAAGAAAAAAG
Found at i:4218 original size:17 final size:17
Alignment explanation
Indices: 4173--4209 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
4163 TACTTCACTC
*
4173 GAAAAAAGAAACGAAAA
1 GAAAAAAGAAAAGAAAA
4190 GAAAAAAGAAAAGAAAA
1 GAAAAAAGAAAAGAAAA
4207 GAA
1 GAA
4210 GAATGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (17 bp):
GAAAAAAGAAAAGAAAA
Found at i:13591 original size:44 final size:45
Alignment explanation
Indices: 13526--13884 Score: 342
Period size: 44 Copynumber: 8.2 Consensus size: 45
13516 GTCATTAAAA
* * *
13526 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTATATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * *
13570 CAGATCCTGTCTTCCTATATTGGT-ATGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * *
13613 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATA-
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * *
13656 CAGATCTTGTCTTCCCATATTGGTGGCGGAGTAGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * * * * *
13700 CAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCAAAGAAAA
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* *
13745 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
* * * *
13789 CAGGTCCTGTCTTCCTATATTGTTAG-GAAGT-GAATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAG-ATCGAAGATAG
* * * * * * *
13832 TAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
13877 CAGATCTT
1 CAGATCTT
13885 ATCTCTCTGA
Statistics
Matches: 261, Mismatches: 43, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
43 85 0.33
44 148 0.57
45 28 0.11
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAG
Found at i:13818 original size:176 final size:175
Alignment explanation
Indices: 13552--13873 Score: 482
Period size: 176 Copynumber: 1.8 Consensus size: 175
13542 GTATTGGCGT
* * * * * * *
13552 GAAGTATATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTATGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGATGCAGA
* *
13617 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGG
66 TCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTGG
*
13682 CGGAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
131 CGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
* * *
13727 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGAT-GCAG
* * **
13792 GTCCTGTCTTCCTATATTGTTAGGAAGTGAATCGAAGATGTAGATCTTGTCTTCCCATACTGGTG
65 ATCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTG
13857 GCGAAGTAGATCGAAGA
130 GCGAAGTAGATCGAAGA
13874 AAACAGATCT
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
175 50 0.39
176 79 0.61
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (175 bp):
GAAGTAGATCAAAGAAAACAGATCCTGTCTTCATATATTGGCATGAAGTAGATCGAAGATGCAGA
TCCTGTCTTCCTATATTGGTAGGAAGTGAATCGAAGATACAGATCTTGTCTTCCCATACTGGTGG
CGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGA
Found at i:13826 original size:132 final size:132
Alignment explanation
Indices: 13552--13884 Score: 390
Period size: 132 Copynumber: 2.5 Consensus size: 132
13542 GTATTGGCGT
* * * * * **
13552 GAAGTATATCGAAGATAGCAGATCCTGTCTTCCTATATTGGT--ATGAAGTGGATCGAAG-ATGC
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGA-GAAGTAGATCGAAGAAAAC
* * * *
13614 AGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATATTGG
64 AGATCTTGTCTTCATATATTGGTAGGAAGTAGATCGAAGATACAGATCCTGTCTTCCCATATTGG
*
13679 TGGC
129 TAGC
* *
13683 GGAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCAAAGAAAACAG
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACAG
* * * * *
13748 ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGT
66 ATCTTGTCTTCATATATTGGTAG-GAAGTAGATCGAAGATA-CAGATCCTGTCTTCCCATATTGG
13812 TAG-
129 TAGC
* *
13815 GAAGT-GAATCGAAGATGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACA
1 GAAGTAG-ATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACA
13879 GATCTT
65 GATCTT
13885 ATCTCTCTGA
Statistics
Matches: 173, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
130 22 0.13
131 28 0.16
132 102 0.59
133 21 0.12
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAACAG
ATCTTGTCTTCATATATTGGTAGGAAGTAGATCGAAGATACAGATCCTGTCTTCCCATATTGGTA
GC
Found at i:14103 original size:50 final size:49
Alignment explanation
Indices: 13949--14110 Score: 144
Period size: 50 Copynumber: 3.3 Consensus size: 49
13939 TGCAATAGAG
* * * * * *
13949 AAGATTAAAGATACGACGGTGAATCTTGTTCCCCGACATTGCAATTAAA
1 AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAGTTAAA
** * * * * * **
13998 AAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTACAGTGGAA
1 AAGATTGAAGCTACAACGGCGAATC-TAGTTCCCCGACATTGCAGTTAAA
* **
14048 CAGATTGAAGCTACAACGGCGAATCCGGTTCCCCGACATTGCAGTTTAAA
1 AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAG-TTAAA
14098 AAGATTGAAGCTA
1 AAGATTGAAGCTA
14111 TACATCACAG
Statistics
Matches: 83, Mismatches: 28, Indels: 3
0.73 0.25 0.03
Matches are distributed among these distances:
49 31 0.37
50 52 0.63
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (49 bp):
AAGATTGAAGCTACAACGGCGAATCTAGTTCCCCGACATTGCAGTTAAA
Found at i:14180 original size:40 final size:41
Alignment explanation
Indices: 14125--14314 Score: 219
Period size: 42 Copynumber: 4.6 Consensus size: 41
14115 TCACAGATCA
*
14125 TATCTCCCTTAGCAGTAGTGGAGCAGATC-G-CCTCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGACCTCAAGTCT
* * * *
14165 TATCTTCCTAAGCAGTAGTGGAGTAGACAGAAC-AACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGACAGACCTCA-AG-TCT
*
14207 TATCTCCCTAAGCAGTAGTGGAGCAGATC-G-CATCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGACCTCAAGTCT
* *
14247 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAACCACAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGACAG-ACCTCAAGTCT
*
14289 TATCTCCCTGAGCAGTAGTGGAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
14315 GTCGAAGATG
Statistics
Matches: 127, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
39 2 0.02
40 57 0.45
41 5 0.04
42 62 0.49
43 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (41 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGACAGACCTCAAGTCT
Found at i:14257 original size:82 final size:82
Alignment explanation
Indices: 14117--14314 Score: 324
Period size: 82 Copynumber: 2.4 Consensus size: 82
14107 GCTATACATC
* * * *
14117 ACAGATCATATCTCCCTTAGCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTTCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
*
14182 GTGGAGTAGACAGAACA
66 GTGGAGCAGACAGAACA
14199 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
*
14264 GTGGAGCAGACAGAACC
66 GTGGAGCAGACAGAACA
* *
14281 ACAAATCTTATCTCCCTGAGCAGTAGTGGAGCAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
14315 GTCGAAGATG
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 108 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (82 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACAGAACA
Found at i:14425 original size:44 final size:44
Alignment explanation
Indices: 14377--14825 Score: 166
Period size: 44 Copynumber: 10.2 Consensus size: 44
14367 CCGATAACTC
* *
14377 TATCTCCCTGGTTGGCAGTGGAATAGATTGAATATTATAGATCT
1 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
** * * ** * * *
14421 TATCTCCCCAAG-TAGTAGTGGAGCAGATTAAAGATGGTAGATTT
1 TATCT-CCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * **
14465 TACCTCCCTGTGACT-ACAGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGATGATAGATCT
* *
14508 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* ** * * ** * ** *
14553 TATCTCCCTAAG-CAGTAGTGTAGCAGATTGAAAATGGCAGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * **
14597 TACCTCCCTGTGACT-ACAGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGATGATAGATCT
* *
14640 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* ** * * ** * ** *
14685 TATCTCCCTAAG-CAGTAGTGTAGCAGATTGAAAATGGCAGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
* * * * * **
14729 TACCTCCCTGTGACT-ACAGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGATGATAGATCT
* *
14772 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
14817 TATCTCCCT
1 TATCTCCCT
14826 AAGCAGTAGT
Statistics
Matches: 284, Mismatches: 97, Indels: 48
0.66 0.23 0.11
Matches are distributed among these distances:
42 3 0.01
43 63 0.22
44 161 0.57
45 56 0.20
46 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (44 bp):
TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGATAGATCT
Found at i:14522 original size:132 final size:132
Alignment explanation
Indices: 14285--15239 Score: 1287
Period size: 132 Copynumber: 7.2 Consensus size: 132
14275 AGAACCACAA
* * *
14285 ATCTTATCTCCCTGAGCAGTAGTGGAGCAGGTCGAAGATGGC-GAATTTTACCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGAGATTA
* * * *
14349 CGGTGAAGTACATTGAAGCCGATAACTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAATATTA
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
*
14414 TAG
130 CAG
* * * * * *
14417 ATCTTATCTCCCCAAGTAGTAGTGGAGCAGATTAAAGATGGTAGATTTTACCTCCCTGTGACTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGATTAC
14482 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
14547 AG
131 AG
* * * *
14549 ATCTTATCTCCCTAAGCAGTAGTGTAGCAGATTGAAA-ATGGCAGATTTTACCTCCCTGTGACTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TCAAAGATGGCAGATTTTACCTCCCTGAGATTA
14613 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
14678 CAG
130 CAG
* * * *
14681 ATCTTATCTCCCTAAGCAGTAGTGTAGCAGATTGAAA-ATGGCAGATTTTACCTCCCTGTGACTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TCAAAGATGGCAGATTTTACCTCCCTGAGATTA
14745 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA
14810 CAG
130 CAG
* **
14813 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGATTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGATTAC
* * * **** ** *
14878 AATGGAGTACATTGAAGCCGGTAGTTCTATCTCCCTGGGCAACAGTAAAATAGATTAAAGATTAC
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
14943 AG
131 AG
* * * *
14945 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCTTGAGATTAC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGATTAC
* * * * *
15010 AGTAGAGTACATTGAAGCCGGTAGTTCTATCTCTCTAGGCAT--CAGTGGAATAGATTGAAGATT
66 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCT-GG-TTGGCAGTGGAATAGATTGAAGATT
15073 ACAG
129 ACAG
* * *
15077 ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGG-AGGATTTTACCTCCCTGAGATTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCA-GATTTTACCTCCCTGAGATTA
* * * * *
15141 CAGTGGAGTATATTGAAGCCGGTAGTTCTATCTCCCTAGG-TAGCAGTGGAATAGATTGAATATT
65 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATT
15205 ACAG
129 ACAG
** *
15209 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA
15240 CTAAAACCAA
Statistics
Matches: 753, Mismatches: 61, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
130 1 0.00
131 15 0.02
132 730 0.97
133 7 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGATTAC
AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTAC
AG
Done.