Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 1 of 161
Found at i:6613 original size:50 final size:50
Alignment explanation
Indices: 6532--6886 Score: 346
Period size: 50 Copynumber: 7.1 Consensus size: 50
6522 NCTGTTCCAC
* *
6532 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * * ** *
6582 TGCAATG-TCAGGGAAGTAAGATTCG-TCGTTGT-GACTTCAATCTGTTCCAC
1 TGCAATGCT-AGGAAAGTAAGATCCGCT-GTTGTAG-CTTCAATCTTTTTAAT
*
6632 TGCAATGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * * ** *
6682 TGCAATG-TCAGGGAAGTAAGATTCG-TCGTTGT-GATTTCAAT-TTGTTCCAC
1 TGCAATGCT-AGGAAAGTAAGATCCGCT-GTTGTAG-CTTCAATCTT-TTTAAT
* * * *
6732 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATATTCTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * * * ** *
6782 TGCAATGTTAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTATTCCAC
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* *
6832 TACAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCATTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
6882 TGCAA
1 TGCAA
6887 ACTATGGTTT
Statistics
Matches: 239, Mismatches: 52, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
49 8 0.03
50 223 0.93
51 8 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (50 bp):
TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
Found at i:6696 original size:100 final size:100
Alignment explanation
Indices: 6523--6886 Score: 581
Period size: 100 Copynumber: 3.6 Consensus size: 100
6513 NNNNNNNNNN
6523 CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
1 CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
6588 GTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAAT
66 GTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAAT
*
6623 CTGTTCCACTGCAATGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
1 CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
*
6688 GTCAGGGAAGTAAGATTCGTCGTTGTGATTTCAAT
66 GTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAAT
* * *
6723 TTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATATTCTTAATTGCAAT
1 CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
*
6788 GTTAGGGAAGTAAGA-TC-TGCTGTTGT-AGCTTCAAT
66 GTCAGGGAAGTAAGATTCGT-C-GTTGTGA-CTTCAAT
* * * * *
6823 CTATTCCACTACAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCATTTTAATTGCAA
1 CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAA
6887 ACTATGGTTT
Statistics
Matches: 245, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
98 1 0.00
99 4 0.02
100 240 0.98
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (100 bp):
CTGTTCCACTGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT
GTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAAT
Found at i:7047 original size:89 final size:89
Alignment explanation
Indices: 6891--7569 Score: 1205
Period size: 89 Copynumber: 7.6 Consensus size: 89
6881 TTGCAAACTA
* * * *
6891 TGGTTTCTTCGATCTGCTTCGCTGTTAGTACAAGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
6956 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
6980 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
7045 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
7069 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
7134 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
7158 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
7223 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
7247 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
7312 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
7336 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
7401 GCTGTCAGTACAAAAAGGCAAGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
* * *
7425 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATTTGTTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
* * * *
7490 GCTGTCAATACAGAAAGACATGGC
66 GCTGTCAGTACAAAAAGGCAAGGC
* * * * * *
7514 TGGTATCTTCGATCTACTTCGCTATCAATACAGGAAGGCAAGATCTGTTATCTTCA
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCA
7570 CTGATCTGTT
Statistics
Matches: 573, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 573 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTT
GCTGTCAGTACAAAAAGGCAAGGC
Found at i:12748 original size:70 final size:71
Alignment explanation
Indices: 12634--12846 Score: 297
Period size: 72 Copynumber: 3.0 Consensus size: 71
12624 CTCAGATTTA
* * *
12634 AAAAAATGGATCATGCCCAGTAAGTTAGGACACGATAT-TCTCTTAATTCCCGAGATCGTTTAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCT-TCTTAATTCCAGAGATCGTTTAAA
12698 ACTTGAG
65 ACTTGAG
*
12705 AAAAAA-GGATCATGCCCAGTAAGTTAGGACACGGTCTCTTCTTAATTCCAGAGATCGTTTTAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCG-TTTAAA
* *
12769 CCTAT-AA
65 ACT-TGAG
* * *
12776 AAAAAAGGGATCATGCCCAGTAAATTAGGACATGATCTCTTCTTAATTCCTGAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTAAAA
12841 CTTGAG
66 CTTGAG
12847 TTTGAAAAGA
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
70 47 0.37
71 31 0.25
72 48 0.38
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (71 bp):
AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTAAAA
CTTGAG
Found at i:12807 original size:72 final size:71
Alignment explanation
Indices: 12633--12845 Score: 281
Period size: 70 Copynumber: 3.0 Consensus size: 71
12623 TCTCAGATTT
* * *
12633 AAAAAAATGGATCATGCCCAGTAAGTTAGGACACGATAT-TCTCTTAATTCCCGAGATCG-TTTA
1 AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCT-TCTTAATTCCAGAGATCGTTTTA
*
12696 AAACTTG
65 AACCTTG
* *
12703 AGAAAAAAGGATCATGCCCAGTAAGTTAGGACACGGTCTCTTCTTAATTCCAGAGATCGTTTTAA
1 AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTAA
12768 ACCTAT-
66 ACCT-TG
* * *
12774 AAAAAAAAGGGATCATGCCCAGTAAATTAGGACATGATCTCTTCTTAATTCCTGAGATCG-TTTA
1 AAAAAAAA-GGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTA
*
12838 AAACTTG
65 AACCTTG
12845 A
1 A
12846 GTTTGAAAAG
Statistics
Matches: 126, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
70 53 0.42
71 25 0.20
72 48 0.38
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (71 bp):
AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTAA
ACCTTG
Found at i:13459 original size:21 final size:21
Alignment explanation
Indices: 13419--13459 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13409 CATGTGTATG
* *
13419 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
13440 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
13460 TTTTGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:22650 original size:27 final size:26
Alignment explanation
Indices: 22619--23347 Score: 719
Period size: 27 Copynumber: 27.3 Consensus size: 26
22609 AGAGGTCGAT
** *
22619 AAATGACTAAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
*
22646 AAATGACTGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
22672 AAATGACCAAAATATCCTCATCGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
22699 GAATGACTGAAATACACCCATTGGGTA
1 AAATGACCGAAATAC-CCCATAGGGTA
* * *
22726 GACTGACCGAAATATCCCCCACAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
* *
22754 AAATGACCGAAATACCCCCACAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
22781 CAATGA-CGAAAATACCCCTACTA-GGTA
1 AAATGACCG-AAATACCCC-A-TAGGGTA
*
22808 GAAAT-ACCAAAATACCCCCATAGGGTA
1 -AAATGACCGAAATA-CCCCATAGGGTA
* *
22835 GAATGACCGAAATACCCTATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
22861 AATTGACCGAAATATCCCATAGGATA
1 AAATGACCGAAATACCCCATAGGGTA
*
22887 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
22914 AAATTACTGAAATATACCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
22941 AAATGACCAAAATACCCTATAGAGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * * *
22967 GAATGACCAAAATATCTCTATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
22994 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
* * * *
23021 AAATAATCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
*
23048 AAATGACAGAAATA-CCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
23073 AAATGACCAAAATATGCCCCGTAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
*
23101 AAATAACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
23128 GAATGACCGAAATACCCCTTAAGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
23154 AAATGACTGAAATACCCCCATAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* *
23181 AAATGACCGAAATAACCCTATAGGATA
1 AAATGACCGAAAT-ACCCCATAGGGTA
*
23208 AAATGACCGAAATACCCTATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
*
23234 GAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
*
23261 AAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* *
23288 AAATAACCGAAATACCCCCATACGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
23315 AAATGACCGAAATACCCCATGGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
23341 AAATGAC
1 AAATGAC
23348 TATTATACCC
Statistics
Matches: 588, Mismatches: 90, Indels: 49
0.81 0.12 0.07
Matches are distributed among these distances:
25 20 0.03
26 169 0.29
27 342 0.58
28 56 0.10
29 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (26 bp):
AAATGACCGAAATACCCCATAGGGTA
Found at i:22684 original size:53 final size:53
Alignment explanation
Indices: 22619--23347 Score: 724
Period size: 53 Copynumber: 13.6 Consensus size: 53
22609 AGAGGTCGAT
** * *
22619 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * * *
22672 AAATGACCAAAATATCCTCATCGGGTAGAATGACTGAAATACACCCATTGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTA
* * * * * *
22726 GACTGACCGAAATATCCCCCACAGGGTAAAATGACCGAAATACCCCCACAAGGTA
1 AAATGACCGAAATA-CCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* *
22781 CAATGA-CGAAAATACCC-CTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTA
1 AAATGACCG-AAATACCCTC-A-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTA
* * * *
22835 GAATGACCGAAATACCCT-ATAGGGTAAATTGACCGAAATATCCCATAGGATA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * *
22887 AAATGACTGAAATACCCCCATAGGGTAAAATTACTGAAATATACCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * * *
22941 AAATGACCAAAATACCCT-ATAGAGTAGAATGACCAAAATATCTCTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * *
22994 AAATGACTGAAATACCC-CTATAGGGTAAAATAATCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTC-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTA
* * *
23048 AAATGACAGAAATA-CC-CATAGGGTAAAATGACCAAAATATGCCCCGTAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA--CCCCATAGGGTA
* * * * *
23101 AAATAACCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * *
23154 AAATGACTGAAATACCCCCATAAGGTAAAATGACCGAAATAACCCTATAGGATA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT-ACCCCATAGGGTA
*
23208 AAATGACCGAAATACCCT-ATAGGGTAGAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCC-ATAGGGTA
* * *
23261 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
*
23315 AAATGACCGAAATACCC-CATGGGGTAAAATGAC
1 AAATGACCGAAATACCCTCATAGGGTAAAATGAC
23348 TATTATACCC
Statistics
Matches: 566, Mismatches: 86, Indels: 48
0.81 0.12 0.07
Matches are distributed among these distances:
52 54 0.10
53 239 0.42
54 202 0.36
55 70 0.12
56 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (53 bp):
AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
Found at i:22972 original size:80 final size:79
Alignment explanation
Indices: 22619--23347 Score: 729
Period size: 80 Copynumber: 9.1 Consensus size: 79
22609 AGAGGTCGAT
** * * *
22619 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAATACCCCATAGGGTAAAATGACCAAAA
1 AAATGACCGAAATACCCT-ATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
* *
22684 TATCCTCATCGGGTA
65 TATCCCCATAGGGTA
* * * * * * *
22699 GAATGACTGAAATACACCCATTGGGTAGACTGACCGAAATATCCCCCACAGGGTAAAATGACCGA
1 AAATGACCGAAATAC-CCTATAGGGTAAAATGACCGAAATA--CCCCATAGGGTAAAATGACCGA
* * *
22764 AATACCCCCACAAGGTA
63 AATATCCCCATAGGGTA
* * *
22781 CAATGA-CGAAAATACCCCTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTAGAATGACC
1 AAATGACCG-AAATA-CCCTA-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTAAAATGACC
*
22843 GAAATA-CCCTATAGGGTA
61 GAAATATCCCCATAGGGTA
* * * * *
22861 AATTGACCGAAATATCCC-ATAGGATAAAATGACTGAAATACCCCCATAGGGTAAAATTACTGAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAA
*
22925 ATATACCCATAGGGTA
64 ATATCCCCATAGGGTA
* * * * * * *
22941 AAATGACCAAAATACCCTATAGAGTAGAATGACCAAAATATCTCTATAGGGTAAAATGACTGAAA
1 AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAA
23006 TA-CCCCTATAGGGTA
65 TATCCCC-ATAGGGTA
* * * * *
23021 AAATAATCAAAATACCCTTATAGGGTAAAATGACAGAAATA-CCCATAGGGTAAAATGACCAAAA
1 AAATGACCGAAATACCC-TATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
*
23085 TATGCCCCGTAGGGTA
65 TAT-CCCCATAGGGTA
* * * * * *
23101 AAATAACCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTAAAATGACTGAAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
* *
23166 TACCCCCATAAGGTA
65 TATCCCCATAGGGTA
* * *
23181 AAATGACCGAAATAACCCTATAGGATAAAATGACCGAAATACCCTATAGGGTAGAATGACCGAAA
1 AAATGACCGAAAT-ACCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
23246 TA-CCCCTATAGGGTA
65 TATCCCC-ATAGGGTA
* *
23261 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGGTAAAATGACCGAA
1 AAATGACCGAAATACCC-TATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAA
*
23326 ATA-CCCCATGGGGTA
64 ATATCCCCATAGGGTA
23341 AAATGAC
1 AAATGAC
23348 TATTATACCC
Statistics
Matches: 538, Mismatches: 89, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
78 6 0.01
79 70 0.13
80 296 0.55
81 105 0.20
82 57 0.11
83 4 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (79 bp):
AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAAT
ATCCCCATAGGGTA
Found at i:23388 original size:107 final size:106
Alignment explanation
Indices: 22619--23347 Score: 643
Period size: 107 Copynumber: 6.8 Consensus size: 106
22609 AGAGGTCGAT
** ** * * * *
22619 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAAT-ACCCCATAGGGTAAAATGACCAAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * * * *
22683 ATATCCTCATCGGGTAGAATGACTGAAATACACCCATTGGGTA
66 ATA-CCCCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTA
* * ** * * * * *
22726 GACTGACCGAAATATCCCCCACAGGGTAAAATGACCGAAATACCCCCACAAGG-TACAATGA-CG
1 AAATGACCGAAATA-CCCTTATAGGGTAAAATAACCGAAATAACCCCA-TAGGATAAAATGACCG
*
22789 AAAATACCCCTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTA
64 -AAATACCCC-A-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTA
* * * * *
22835 GAATGACCGAAATACCC-TATAGGGTAAATTGACCGAAAT-ATCCCATAGGATAAAATGACTGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * *
22898 ATACCCCCATAGGGTAAAATTACTGAAATATACCCATAGGGTA
66 ATA-CCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * * * * * * *
22941 AAATGACCAAAATACCC-TATAGAGTAGAATGACCAAAATATCTCTATAGGGTAAAATGACTGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * * *
23005 ATACCCCTATAGGGTAAAATAATCAAAATACCCTTATAGGGTA
66 ATACCCC-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTA
* * * * * * *
23048 AAATGACAGAAATACCC--ATAGGGTAAAATGACCAAAATATGCCCCGTAGGGTAAAATAACCGA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATA-ACCCCATAGGATAAAATGACCGA
* * *
23111 AATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTA
65 AATA-CCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* ** * * *
23154 AAATGACTGAAATACCCCCATAAGGTAAAATGACCGAAATAACCCTATAGGATAAAATGACCGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* *
23219 ATACCCTATAGGGTAGAATGACCGAAATACCCCTATAGGGTA
66 ATACCCCATAGGGTAAAATGACCGAAATACCCC-ATAGGGTA
*
23261 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGG-TAAAATGACCGA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATA-GGATAAAATGACCGA
*
23325 AATACCCCATGGGGTAAAATGAC
65 AATACCCCATAGGGTAAAATGAC
23348 TATTATACCC
Statistics
Matches: 514, Mismatches: 86, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
105 9 0.02
106 149 0.29
107 241 0.47
108 55 0.11
109 52 0.10
110 8 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (106 bp):
AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
ATACCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
Found at i:25518 original size:18 final size:18
Alignment explanation
Indices: 25497--25537 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
25487 TTTTGTTTTC
* *
25497 TTTCATTATTTTTTTCCT
1 TTTCAATATATTTTTCCT
*
25515 TTTCAATATATTTTTCTT
1 TTTCAATATATTTTTCCT
25533 TTTCA
1 TTTCA
25538 CATGCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTCAATATATTTTTCCT
Found at i:27918 original size:30 final size:30
Alignment explanation
Indices: 27879--27957 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
27869 ATAAAATAGC
*
27879 ATCAAGCTCAATGAGCTAAGATT-GAGTTGA
1 ATCAAGCTCAATGAGCTAA-ATTCGAGCTGA
* *
27909 ATTAAGCTCAATGAACTGAAATTCGAGCTGA
1 ATCAAGCTCAATGAGCT-AAATTCGAGCTGA
* *
27940 ATCAAGCTCCATAAGCTA
1 ATCAAGCTCAATGAGCTA
27958 GGATCTAGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 19 0.47
31 21 0.52
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (30 bp):
ATCAAGCTCAATGAGCTAAATTCGAGCTGA
Found at i:27947 original size:31 final size:30
Alignment explanation
Indices: 27879--27948 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
27869 ATAAAATAGC
* *
27879 ATCAAGCTCAATGAGCTAAGATTGAGTTGA
1 ATCAAGCTCAATGAACTAAGATTGAGCTGA
*
27909 ATTAAGCTCAATGAACTGAA-ATTCGAGCTGA
1 ATCAAGCTCAATGAACT-AAGATT-GAGCTGA
27940 ATCAAGCTC
1 ATCAAGCTC
27949 CATAAGCTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (30 bp):
ATCAAGCTCAATGAACTAAGATTGAGCTGA
Found at i:29914 original size:27 final size:27
Alignment explanation
Indices: 29878--30323 Score: 394
Period size: 27 Copynumber: 16.8 Consensus size: 27
29868 TGAGGTCAAT
* * * *
29878 AAATGACCAAAACACCCCCGTAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
29905 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* ** * *
29932 GAATGATTGAAATACCCTAATAGGGGA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
29959 GAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * *
29986 AAATGACCTAAATACCC-CTATATGTTA
1 AAATGACCGAAATACCCTC-ATAGGGTA
*
30013 GAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * * *
30040 GAATGACTGAAATACCCTCGTAAGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
30067 AATTGACTGAAATACCCT-ATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
30093 AATTGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
**
30120 AAATGACTAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
30147 AAATGATCGAAATACCC-CAATAGGGTA
1 AAATGACCGAAATACCCTC-ATAGGGTA
* *
30174 GAATGACCGAAATAATCC-CATAGGGT-
1 AAATGACCGAAAT-ACCCTCATAGGGTA
*
30200 AAAT----GAAATACTAC-CATAGGGT-
1 AAATGACCGAAATAC-CCTCATAGGGTA
*
30222 AAATGACTGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* **
30249 AAATAACAAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * * * *
30276 AAATGATCAAAATACCCCCATACGGTC
1 AAATGACCGAAATACCCTCATAGGGTA
* *
30303 AAATGTCTGAAATACCC-CATA
1 AAATGACCGAAATACCCTCATA
30324 TTCATTGGAT
Statistics
Matches: 350, Mismatches: 57, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.00
22 18 0.05
25 1 0.00
26 46 0.13
27 279 0.80
28 5 0.01
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCATAGGGTA
Found at i:30216 original size:22 final size:22
Alignment explanation
Indices: 30182--30227 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
30172 TAGAATGACC
*
30182 GAAATAATCCCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
*
30204 GAAATACTACCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
30226 GA
1 GA
30228 CTGAAATACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.22
Consensus pattern (22 bp):
GAAATAATACCATAGGGTAAAT
Found at i:30262 original size:75 final size:76
Alignment explanation
Indices: 30138--30277 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 76
30128 AAAATACCCT
* * ** *
30138 CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAGAATGACCGAAATAATCC-CATAGGGTAA
1 CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAAAATAACAAAAAT-ACCCTCATAGGGTAA
30202 ATGAAATACTAC
65 ATGAAATACTAC
30214 CATAGGGT-AAATGA-CTGAAATACCCTC-ATAGGGTAAAATAACAAAAATACCCTCATAGGGTA
1 CATAGGGTAAAATGATC-GAAATACCC-CAATAGGGTAAAATAACAAAAATACCCTCATAGGGTA
30276 AA
64 AA
30278 ATGATCAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
74 4 0.07
75 43 0.77
76 9 0.16
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (76 bp):
CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAAAATAACAAAAATACCCTCATAGGGTAAA
TGAAATACTAC
Found at i:30289 original size:102 final size:104
Alignment explanation
Indices: 30112--30307 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 104
30102 AAATACCCTT
* * *
30112 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCAATAGGGTAGAA
1 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAACAAAATACCCCAATAGGGTAAAA
* * *
30177 TGACCGAAATAATCCCATAGGGT-AAATGAAATACTACC
66 TGACCAAAATAACCCCATACGGTCAAATGAAATACTACC
*
30215 ATAGGGT-AAATGACTGAAATACCCTCATAGGGTAAAAT-AACAAAAATACCCTC-ATAGGGTAA
1 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAAC-AAAATACCC-CAATAGGGTAA
* *
30277 AATGATCAAAATACCCCCATACGGTCAAATG
64 AATGACCAAAATAACCCCATACGGTCAAATG
30308 TCTGAAATAC
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 2 0.02
102 66 0.81
103 13 0.16
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.20
Consensus pattern (104 bp):
ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAACAAAATACCCCAATAGGGTAAAA
TGACCAAAATAACCCCATACGGTCAAATGAAATACTACC
Found at i:52446 original size:27 final size:27
Alignment explanation
Indices: 52416--52593 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
52406 ATATTGAGTC
* * * *
52416 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
52443 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
52470 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
52498 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
52525 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
52552 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
52579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52594 GTACAATTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:52555 original size:82 final size:81
Alignment explanation
Indices: 52437--52592 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
52427 TGCTATATAA
* *
52437 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
52502 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
52519 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
52583 CACTTAGTGC
65 CACTTAGTGC
52593 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:52605 original size:82 final size:83
Alignment explanation
Indices: 52416--52605 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 83
52406 ATATTGAGTC
* * * * *
52416 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
52480 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
52498 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
52559 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
52579 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
52606 CCCGCGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:68144 original size:50 final size:50
Alignment explanation
Indices: 68069--68256 Score: 232
Period size: 50 Copynumber: 3.8 Consensus size: 50
68059 TTTCTTGTAC
* * * * ** * *
68069 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * **
68119 TGCCCATGCCATGTCGCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
68169 TGCTAACGCCAAGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
68219 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC
68257 ATTTTTACCC
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 117 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:77427 original size:13 final size:13
Alignment explanation
Indices: 77406--77435 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
77396 GCATCTTTAT
*
77406 TTAATGTTTTGCA
1 TTAAAGTTTTGCA
77419 TTAAAGTTTTGCA
1 TTAAAGTTTTGCA
77432 TTAA
1 TTAA
77436 TACATCTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (13 bp):
TTAAAGTTTTGCA
Found at i:82905 original size:79 final size:82
Alignment explanation
Indices: 82769--82953 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
82759 TTGAATGATG
* *
82769 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
82833 TGTACGAGATACTA-AT
66 TGTACGAGATACTATAA
* * * **
82849 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
* *
82911 TTGTGCGAGTTACTATAA
65 TTGTACGAGATACTATAA
*
82929 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82954 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTACGAGATACTATAA
Found at i:82967 original size:40 final size:40
Alignment explanation
Indices: 82769--82960 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
82759 TTGAATGATG
* * * * *
82769 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * *
82809 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
*
82849 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
82888 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
82929 T-CGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
82961 AGCTATATCC
Statistics
Matches: 128, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 34 0.27
40 84 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:82975 original size:79 final size:79
Alignment explanation
Indices: 82822--82986 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
82812 GGACTAAGAT
* * **
82822 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
82887 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
82901 CCGAAGGCAATTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
82964 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
82980 CCGAAGG
1 CCGAAGG
82987 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:89781 original size:37 final size:37
Alignment explanation
Indices: 89731--89809 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
89721 TTATTATGAA
* *
89731 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
89768 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
89805 GTCTT
1 GTCTT
89810 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:90006 original size:47 final size:47
Alignment explanation
Indices: 89928--90230 Score: 516
Period size: 47 Copynumber: 6.4 Consensus size: 47
89918 CCCTTCGAGA
* * * * * *
89928 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89975 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90069 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90165 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90212 CTTATCACATATATACACT
1 CTTATCACATATATACACT
90231 GTCTTGGCTG
Statistics
Matches: 244, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 197 0.81
49 47 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90201 original size:143 final size:143
Alignment explanation
Indices: 89928--90226 Score: 521
Period size: 143 Copynumber: 2.1 Consensus size: 143
89918 CCCTTCGAGA
* * * *
89928 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
89991 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90056 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * *
90069 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
90134 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90199 TCGGCCATTAGGC
131 TCGGCCATTAGGC
90212 CTTATCACATATATA
1 CTTATCACATATATA
90227 CACTGTCTTG
Statistics
Matches: 149, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
141 10 0.07
142 1 0.01
143 138 0.93
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:94171 original size:39 final size:39
Alignment explanation
Indices: 94007--94189 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
93997 TTGAATGCTG
* * * * * *
94007 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
94047 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
**
94087 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
94127 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
94166 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94190 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 37 0.31
40 75 0.62
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:94209 original size:79 final size:80
Alignment explanation
Indices: 94043--94224 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
94033 GCTAAGTGAA
** * * *
94043 TATATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
94107 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * *
94123 TAAATCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
94187 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
94202 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
94225 TACGTGATTT
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.18
79 50 0.60
80 19 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:99648 original size:47 final size:44
Alignment explanation
Indices: 99592--99753 Score: 148
Period size: 47 Copynumber: 3.5 Consensus size: 44
99582 CTATAAAAAG
*
99592 TATAAAAATATGTGTGTATATATATACATATTTTAAAATTATTAAA
1 TATAAAAA-ATGTATGTATATATATA-ATATTTTAAAATTATTAAA
* * *
99638 TATAACAAATATATATGTATATATATAA-ATTATAAAATATATTTATA
1 TATAA-AAA-ATGTATGTATATATATAATATTTTAAAAT-TA-TTAAA
* * ** *
99685 TGTTACAAGAATGTATGTATGCATAT-ATATTTTAAAATTATAAAA
1 T-ATA-AAAAATGTATGTATATATATAATATTTTAAAATTATTAAA
*
99730 TATAAAAAACGTATGTATATATAT
1 TATAAAAAATGTATGTATATATAT
99754 GGATCATAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 16 0.17
44 2 0.02
45 13 0.14
46 11 0.12
47 46 0.49
48 4 0.04
49 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (44 bp):
TATAAAAAATGTATGTATATATATAATATTTTAAAATTATTAAA
Found at i:99815 original size:21 final size:21
Alignment explanation
Indices: 99775--99815 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
99765 CACGTGTATG
* *
99775 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
99796 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
99816 TTTGGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:101472 original size:115 final size:115
Alignment explanation
Indices: 101266--101501 Score: 305
Period size: 115 Copynumber: 2.1 Consensus size: 115
101256 CTCCTTCCAA
* * **
101266 TCCACTGTGTCTTGTTGCTGCAATCCACTCCACTGCACTTCAGAGAGATATGACTTGTAGTTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* * * *
101331 ATGCAGTCTGCTGTAACTTTAAGGGGATGAGATTTGTGGTTTTAGTCTAC
66 ATGCAGTCTGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
* *
101381 TCCACTGTGTCTCGTTGCTTCAATCCACTCTACTACACTTCAGAGAGATATGACTTGTAACTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* * * * *
101446 AT-C-TTCTTTGCAGCAACTTCAGGGGGACGAGATTTTTGGTTTTAGTGTGC
66 ATGCAGTC--TGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
101496 TCCACT
1 TCCACT
101502 ACAACATCAG
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
113 2 0.02
114 1 0.01
115 101 0.97
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (115 bp):
TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
ATGCAGTCTGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
Found at i:101843 original size:225 final size:225
Alignment explanation
Indices: 101593--102032 Score: 711
Period size: 225 Copynumber: 2.0 Consensus size: 225
101583 AGTCTACTCT
* *
101593 ACTGCAACTTCAGGGAGATAAGACTTGCATATTCAACCTGTCCCACTACAACTTCA-GAGGGATA
1 ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATG-GGGATA
* *
101657 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAATGTTTGATATGATCTACTCT
65 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCT
* ** * * *
101722 ATTGCATTTTCAGAGAGATGAGATTTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGT
130 ACTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGG
101787 GAAATAAGATTTGCTATCTTTAATTTGCTCC
195 GAAATAAGATTTGCTATCTTTAATTTGCTCC
* * * * *
101818 ACTGCAACTTTAGGGAGATAAGACTTATATCTTCAACTTGCCCCACTTCAACTTCATGGGGATAA
1 ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATGGGGATAA
* *
101883 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTTAGAGAGATAAAGTTTGATATGATCTACGCTA
66 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
101948 CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
131 CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
102013 AAATAAGATTTGCTATCTTT
196 AAATAAGATTTGCTATCTTT
102033 CATCTGCTTT
Statistics
Matches: 197, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
225 196 0.99
226 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (225 bp):
ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATGGGGATAA
GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
AAATAAGATTTGCTATCTTTAATTTGCTCC
Found at i:101926 original size:44 final size:44
Alignment explanation
Indices: 101589--101932 Score: 155
Period size: 44 Copynumber: 7.7 Consensus size: 44
101579 CTTTAGTCTA
* **
101589 CTCTACTGCAACTTCAGGGAGATAAGACTTGCATA-TTCAACCTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGC-TACTTCAACCTG
* * *
101633 -TCCCACTACAACTTCAGAGGGATAAGGTTTGCTACTTCAACCTG
1 CT-CTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* * * * * *
101677 CTCTACTGCAACTTCAAAGAGATAATGTTTGATA--T-GATCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* ** * ** * *
101718 CTCTATTGCATTTTCAGAGAGATGAGATTTGTTATTTATAGCTTTAATCTG
1 CTCTACTGCAACTTCAGAGAGAT-A-A---GGT-TTGCTA-CTTCAACCTG
* * * * * **
101769 -TTTCACTGCAACTTCAGTGAAATAAGATTTGCTATCTTTAATTTG
1 CTCT-ACTGCAACTTCAGAGAGATAAGGTTTGCTA-CTTCAACCTG
* * * ** * *
101814 CTCCACTGCAACTTTAGGGAGATAAGACTT-ATATCTTCAACTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTA-CTTCAACCTG
* * * *
101858 CCCCACTTCAACTTCATG-GGGATAAGGTTTGCTACTTCAACCTG
1 CTCTACTGCAACTTCA-GAGAGATAAGGTTTGCTACTTCAACCTG
* *
101902 CTCTACTGCAACTTTAGAGAGATAAAGTTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTG
101933 ATATGATCTA
Statistics
Matches: 224, Mismatches: 58, Indels: 36
0.70 0.18 0.11
Matches are distributed among these distances:
41 22 0.10
42 2 0.01
43 5 0.02
44 124 0.55
45 39 0.17
46 4 0.02
47 5 0.02
49 1 0.00
50 4 0.02
51 18 0.08
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (44 bp):
CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
Found at i:106102 original size:46 final size:45
Alignment explanation
Indices: 105889--106105 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 45
105879 TGTGTGAGCT
* * * * *
105889 AGTGTAAGACATGCCTGGGGCATGCATCGGCCACATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TATGA-GACGTAGTC
105935 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-AGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGACGTAGT-C
* *
105982 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGACGT-AGTC
* *
106029 AGTGTAAGAAATGTCTGGGACATGCATCGGCTATGAGATGTA-TC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGACGTAGTC
* *
106073 AGTTTAAGACCATGTCTGGGATATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
106106 ACAGAAATGC
Statistics
Matches: 145, Mismatches: 13, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
44 9 0.06
45 18 0.12
46 70 0.48
47 30 0.21
48 18 0.12
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGACGTAGTC
Found at i:112974 original size:28 final size:28
Alignment explanation
Indices: 112911--113033 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
112901 ATATTAAGTC
*
112911 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
112938 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
112966 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
112994 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
113023 CGCACACTTAG
1 CGCACACTTAG
113034 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:116925 original size:46 final size:46
Alignment explanation
Indices: 116793--116963 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
116783 ACTAGTCGCT
* * * * *
116793 AGTGTAGGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCC
* ** * * *
116839 AGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCC
*
116887 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCC
*
116933 AGTGTAAGAGATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
116964 TATGAGATGT
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 53 0.52
47 26 0.26
48 21 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCC
Found at i:121431 original size:39 final size:39
Alignment explanation
Indices: 121377--121501 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
121367 GAAATGTGTA
121377 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
121416 TGGAAATATATCCGGGCTAAAGACCTGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* * * *
121455 TGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
121494 TGGTAATA
1 TGGAAATA
121502 AAATTTCGGG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:123262 original size:49 final size:49
Alignment explanation
Indices: 123088--124134 Score: 1925
Period size: 49 Copynumber: 21.6 Consensus size: 49
123078 CCCTTCGGGA
* * * * *
123088 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
123135 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
123182 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
123229 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123278 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123374 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123423 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123472 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123521 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123570 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123668 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123717 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123766 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123815 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123864 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123913 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
123962 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
124011 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
124060 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
124109 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
124135 CACAATTATC
Statistics
Matches: 977, Mismatches: 17, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 139 0.14
49 837 0.86
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:135241 original size:46 final size:45
Alignment explanation
Indices: 135133--135307 Score: 149
Period size: 44 Copynumber: 3.9 Consensus size: 45
135123 GCTATACACC
* ** * * *
135133 TAAAA-TGAGTAAGACAATAACTGAAATATGCTATGACTTCA-GAA
1 TAAAAGTGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATG-A
* * * * *
135177 TAAAA-TAAGTAAGACCATAGTTGGAAGATGCTATAGCATTATGG
1 TAAAAGTGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATGA
* **
135221 TAAAAGATGAGTAAGACCATAGTTAAAAGACACTATGGCATCATGA
1 TAAAAG-TGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATGA
** * *
135267 TGGAAGTGAGTAAGACCATGGCTGAAAGATGCTATGGCATC
1 TAAAAGTGAGTAAGACCATAGTTGAAAGATGCTATGGCATC
135308 CTTCGAAAGT
Statistics
Matches: 102, Mismatches: 26, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
44 36 0.35
45 31 0.30
46 35 0.34
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (45 bp):
TAAAAGTGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATGA
Found at i:138607 original size:25 final size:27
Alignment explanation
Indices: 138579--138634 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
138569 ACAAAAGATG
* *
138579 TGGTAAG-GAG-GTTCGCTAGTGTGTT
1 TGGTAAGCGAGTGTTCACTAGTGAGTT
* *
138604 TGGTGAGCTAGTGTTCACTAGTGAGTT
1 TGGTAAGCGAGTGTTCACTAGTGAGTT
138631 TGGT
1 TGGT
138635 GTACTAGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.24
26 2 0.08
27 17 0.68
ACGTcount: A:0.16, C:0.09, G:0.38, T:0.38
Consensus pattern (27 bp):
TGGTAAGCGAGTGTTCACTAGTGAGTT
Found at i:138619 original size:27 final size:28
Alignment explanation
Indices: 138588--138653 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
138578 GTGGTAAGGA
*
138588 GGTTCGCTAGTGTGTTTGGTG-AGCTA-G
1 GGTTCGCTAGTGAGTTTGGTGTA-CTAGG
* *
138615 TGTTCACTAGTGAGTTTGGTGTACTAGG
1 GGTTCGCTAGTGAGTTTGGTGTACTAGG
138643 GGTTCGCTAGT
1 GGTTCGCTAGT
138654 CAAAGATTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 21 0.66
28 11 0.34
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.38
Consensus pattern (28 bp):
GGTTCGCTAGTGAGTTTGGTGTACTAGG
Found at i:159232 original size:12 final size:12
Alignment explanation
Indices: 159215--159246 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
159205 TTATTAAAAC
159215 TACTTTTATTTT
1 TACTTTTATTTT
159227 TACTTTTATTTT
1 TACTTTTATTTT
*
159239 TATTTTTA
1 TACTTTTA
159247 GCAGATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (12 bp):
TACTTTTATTTT
Found at i:163085 original size:42 final size:42
Alignment explanation
Indices: 162972--163128 Score: 217
Period size: 42 Copynumber: 3.7 Consensus size: 42
162962 AGTACCGTAC
* * * *
162972 CAATGCCATATCCTAGATATGGTATTACA-TATAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCATAT
* *
163014 CAATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAT
* *
163057 CGATGCCATATCCCAGATATGGTCTTACACGAAGTCTTATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
163099 CAATGCCATATCCCAGATATGGTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
163129 ATAATCTCAG
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
42 68 0.67
43 33 0.32
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
Found at i:163099 original size:85 final size:84
Alignment explanation
Indices: 162974--163128 Score: 222
Period size: 85 Copynumber: 1.8 Consensus size: 84
162964 TACCGTACCA
* * *
162974 ATGCCATATCCTAGATATGGTATTACATATAATCTCATATCAATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTATTACAGATAATCTCATATCAATGCC-ATAGCCCAGATATGGTC
163039 TTACACGAAGTCTCATATCG
65 TTACACGAAGTCTCATATCG
* * * *
163059 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTTATATCAATGCCATATCCCAGATATGGTC
1 ATGCCATATCCCAGATATGGTATTACA-GATAATCTCATATCAATGCCATAGCCCAGATATGGTC
163123 TTACAC
65 TTACAC
163129 ATAATCTCAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 21 0.34
85 40 0.65
86 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTATTACAGATAATCTCATATCAATGCCATAGCCCAGATATGGTCT
TACACGAAGTCTCATATCG
Found at i:170116 original size:25 final size:25
Alignment explanation
Indices: 170088--170138 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
170078 TGTGTTTTAA
170088 TGATTTATGAAGAAACATGAGAGTT
1 TGATTTATGAAGAAACATGAGAGTT
* *
170113 TGATTTATGAAGGAATATGAGAGTT
1 TGATTTATGAAGAAACATGAGAGTT
170138 T
1 T
170139 AAAGGATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.35
Consensus pattern (25 bp):
TGATTTATGAAGAAACATGAGAGTT
Found at i:181403 original size:23 final size:22
Alignment explanation
Indices: 181352--181403 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
181342 AAAATTGAAA
181352 TGAAAAAAAAAATAAAAATCAAAA
1 TGAAAAAAAAAAT-AAAAT-AAAA
181376 -GAAAAACAAAAATAAAATAAAA
1 TGAAAAA-AAAAATAAAATAAAA
181398 T-AAAAA
1 TGAAAAA
181404 TAGGAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 9 0.35
23 11 0.42
24 6 0.23
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.12
Consensus pattern (22 bp):
TGAAAAAAAAAATAAAATAAAA
Found at i:181404 original size:6 final size:6
Alignment explanation
Indices: 181349--181405 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
181339 AATAAAATTG
* * *
181349 AAATGAA AAA-AA AAATAA AAATCA AAAGAA AAACAA AAAT-A AAAT-A
1 AAAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
181395 AAATAA AAATA
1 AAATAA AAATA
181406 GGAATAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
5 15 0.35
6 25 0.58
7 3 0.07
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.12
Consensus pattern (6 bp):
AAATAA
Found at i:191750 original size:50 final size:50
Alignment explanation
Indices: 191687--192620 Score: 1717
Period size: 50 Copynumber: 18.7 Consensus size: 50
191677 CTGGTACATA
* *
191687 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191737 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191787 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191837 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191887 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191937 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
191987 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192037 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192087 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192137 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192187 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192237 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192287 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192337 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192387 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192437 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * ** * * ** *
192487 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGATACACG
* ** *
192538 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
192587 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
192621 CACAATAGCT
Statistics
Matches: 864, Mismatches: 18, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
49 42 0.05
50 784 0.91
51 38 0.04
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:197417 original size:20 final size:20
Alignment explanation
Indices: 197381--197423 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
197371 GAACTCACAT
* *
197381 TTGTTGAATTTGGCATATAA
1 TTGTTGAATTTAGCATACAA
*
197401 TTGTTGAATTTATCATACAA
1 TTGTTGAATTTAGCATACAA
197421 TTG
1 TTG
197424 CTTATCTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (20 bp):
TTGTTGAATTTAGCATACAA
Found at i:197921 original size:21 final size:18
Alignment explanation
Indices: 197895--197939 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
197885 TCTATCTGTT
197895 AACTCTTGCAACTGAGCTTTC
1 AACTCTTGCAACT---CTTTC
*
197916 AACTCTTTCAACTCTTTC
1 AACTCTTGCAACTCTTTC
197934 AACTCT
1 AACTCT
197940 GTCAGAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 11 0.48
21 12 0.52
ACGTcount: A:0.24, C:0.31, G:0.07, T:0.38
Consensus pattern (18 bp):
AACTCTTGCAACTCTTTC
Found at i:197923 original size:9 final size:9
Alignment explanation
Indices: 197911--197939 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
197901 TGCAACTGAG
197911 CTTTCAACT
1 CTTTCAACT
197920 CTTTCAACT
1 CTTTCAACT
197929 CTTTCAACT
1 CTTTCAACT
197938 CT
1 CT
197940 GTCAGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (9 bp):
CTTTCAACT
Found at i:200505 original size:42 final size:42
Alignment explanation
Indices: 200446--200531 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
200436 GAGTATACTG
* *
200446 ACTTCATTTCAATTTCCACACTAGGGGACACATAGCCGTGTA
1 ACTTCATTTCAATTTCCACACTAGGGGACACAAAGCCGCGTA
200488 ACTTCATTTCAATTTCCACACTAGGGGACACAAAGCCGCGTA
1 ACTTCATTTCAATTTCCACACTAGGGGACACAAAGCCGCGTA
200530 AC
1 AC
200532 ATGTTCGTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (42 bp):
ACTTCATTTCAATTTCCACACTAGGGGACACAAAGCCGCGTA
Found at i:202935 original size:28 final size:29
Alignment explanation
Indices: 202823--202947 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
202813 GAAAGCATGA
* *
202823 ATATGCATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
202852 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
202881 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
202910 ATATGAATG-AAATTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
202938 ATATGTATGT
1 ATATGAATGT
202948 ATGTAGACTT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 24 0.28
29 63 0.72
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:204379 original size:41 final size:40
Alignment explanation
Indices: 204291--204474 Score: 215
Period size: 41 Copynumber: 4.5 Consensus size: 40
204281 GATATCTCGT
* * * * * ** *
204291 ACACTAAGTGCCGTACATGGCCAAAGCTATCTCAAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCTGATCTTGC
*
204331 ACACTAAGTTCCATATATAGCCGAAGCTATCTCGATCTTGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCT-GATCTTGC
* *
204372 ACACTAAGTGCCATATATAGTCGTAGCTATCTTGATCTTGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATC-TGATCTTGC
* *
204413 ACACTAAGTGCCATATATAGCCAAAGCTATCATGATCTCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATC-TGATCTTGC
*
204454 ACACTAAGTGCCACATATAGC
1 ACACTAAGTGCCATATATAGC
204475 TGATTTGTCG
Statistics
Matches: 124, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 27 0.22
41 96 0.77
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCGAAGCTATCTGATCTTGC
Found at i:211474 original size:40 final size:41
Alignment explanation
Indices: 211409--211557 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 41
211399 TACTCGATAT
* * *
211409 CTCGTACACTAAGTGCCGTACATAGCTGAAGCTATCTC-AA
1 CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCGAA
* * *
211449 ATCGCACACTAAGTGCCATATATAGCTGAAGCTATATCGAT
1 CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCGAA
* *
211490 CTCGCACACTAAGTGCCATAT-TAGCCGAAGCTATCTCGAC
1 CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCGAA
211530 CTCGCACACTAAGTGCCATATATAGCTG
1 CTCGCACACTAAGTGCCATATATAGCTG
211558 CTTTGTCATC
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 70 0.73
41 26 0.27
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (41 bp):
CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCGAA
Found at i:211569 original size:81 final size:81
Alignment explanation
Indices: 211407--211557 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
211397 AATACTCGAT
* * *
211407 ATCTCGTACACTAAGTGCCGTACATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
211472 AGCTGAAGCTATATCG
66 AGCTGAAGCTATATCG
* **
211488 ATCTCGCACACTAAGTGCCATA-TTAGCCGAAGCTATCTCGACCTCGCACACTAAGTGCCATATA
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTC-AAATCGCACACTAAGTGCCATATA
211552 TAGCTG
65 TAGCTG
211558 CTTTGTCATC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 15 0.24
81 48 0.76
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (81 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
AGCTGAAGCTATATCG
Found at i:215957 original size:46 final size:46
Alignment explanation
Indices: 215896--216171 Score: 444
Period size: 46 Copynumber: 6.0 Consensus size: 46
215886 TTTCTGTCAT
* *
215896 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
*
215942 GTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
**
215988 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* * * *
216034 GTTGCCATTGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
*
216080 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
**
216126 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
216172 AGAGCACACT
Statistics
Matches: 212, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 212 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
Found at i:216054 original size:138 final size:138
Alignment explanation
Indices: 215896--216171 Score: 516
Period size: 138 Copynumber: 2.0 Consensus size: 138
215886 TTTCTGTCAT
* *
215896 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAGGTTGTCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
*
215961 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
216026 CATATCAG
131 CATATCAG
*
216034 GTTGCCATTGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
216099 ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
216164 CATATCAG
131 CATATCAG
216172 AGAGCACACT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 134 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (138 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
CATATCAG
Found at i:218272 original size:16 final size:16
Alignment explanation
Indices: 218253--218291 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
218243 AATTTTTCCC
*
218253 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
*
218269 TTTTTTCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
218285 TCTTTCC
1 TTTTTCC
218292 CCTGCTCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:218340 original size:17 final size:17
Alignment explanation
Indices: 218318--218360 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
218308 TTTCATCCTT
218318 TTTTTCTTTTTCTATT-C
1 TTTTTCTTTTT-TATTCC
218335 TTTTTCTTTTTTATTCC
1 TTTTTCTTTTTTATTCC
*
218352 TTTTACTTT
1 TTTTTCTTT
218361 ATATATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCTTTTTTATTCC
Found at i:218476 original size:65 final size:67
Alignment explanation
Indices: 218342--218465 Score: 218
Period size: 65 Copynumber: 1.9 Consensus size: 67
218332 TTCTTTTTCT
*
218342 TTTTTATTCCTTTTACTTTATATATATATATTATAATAACTTAATAATAGCTATCTATAATAAAA
1 TTTTTATTCCTTTTACTTTATATATATATATTATAATAACTTAATAATAGCTATCAATAATAAAA
218407 TA
66 TA
218409 TTTTTATTCCTTTTAC-TT-TATATATATATTATAATAACTTAATAATAGCTAT-AATAA
1 TTTTTATTCCTTTTACTTTATATATATATATTATAATAACTTAATAATAGCTATCAATAA
218466 AATATCTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
64 4 0.07
65 34 0.61
66 2 0.04
67 16 0.29
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.50
Consensus pattern (67 bp):
TTTTTATTCCTTTTACTTTATATATATATATTATAATAACTTAATAATAGCTATCAATAATAAAA
TA
Found at i:221660 original size:18 final size:18
Alignment explanation
Indices: 221637--221690 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
221627 AAATTAGTAA
221637 TGAAGAGGAAGAAGATCC
1 TGAAGAGGAAGAAGATCC
*
221655 TGAAGAGGAAGAGGA-CC
1 TGAAGAGGAAGAAGATCC
*
221672 TAGAGGAGGAAGAAGATCC
1 T-GAAGAGGAAGAAGATCC
221691 CAATGAAGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.10
18 26 0.84
19 2 0.06
ACGTcount: A:0.43, C:0.11, G:0.37, T:0.09
Consensus pattern (18 bp):
TGAAGAGGAAGAAGATCC
Found at i:226082 original size:27 final size:27
Alignment explanation
Indices: 226039--226114 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
226029 TGAACACACT
** *
226039 AGAAATTGGAAGCCTTTGTGGTGATATA
1 AGAAA-TGGAAGCCTTTGTGGCAATACA
*
226067 AGAAATGGAAGCCTTTGTGGCAATCCA
1 AGAAATGGAAGCCTTTGTGGCAATACA
* *
226094 AAAAATGGAAACCTTTGTGGC
1 AGAAATGGAAGCCTTTGTGGC
226115 GAACTAAGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 37 0.88
28 5 0.12
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (27 bp):
AGAAATGGAAGCCTTTGTGGCAATACA
Found at i:231575 original size:47 final size:49
Alignment explanation
Indices: 231376--231694 Score: 234
Period size: 47 Copynumber: 6.7 Consensus size: 49
231366 ATAAGTTAAT
* *
231376 GATGCCATGTCCCAGACATGGTCTTATACTGGCTATCATCATCGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCC
* * * * * * * *
231425 GATGCCGTGTCCTAAACATGGTCTTACACTAGCTCTCGTATATATACG-TGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--AT-CAT-CGAGGCC
* * * * * *
231477 AATGCCATGTCCCAGACATAGTCTTATACTAGC-A-CAAC-TCTTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATC-GAGGCC
*
231523 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTATCATCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCC
* * * * *
231570 GATG-CATGTCCCAGACAT-GTCTTAGACTAGC-ACTCGTC-TCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGCC
* * * * * *
231616 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTGATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCC
231664 GATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
231695 ACACGAATAA
Statistics
Matches: 211, Mismatches: 44, Indels: 33
0.73 0.15 0.11
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 33 0.16
47 65 0.31
48 19 0.09
49 32 0.15
50 1 0.00
51 2 0.01
52 31 0.15
53 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCC
Found at i:239114 original size:49 final size:49
Alignment explanation
Indices: 239042--239215 Score: 162
Period size: 49 Copynumber: 3.6 Consensus size: 49
239032 TAAGTTGCCA
* * *
239042 ATGCCATGTCCCAGACATTGTCTTACACTGGCTATCGTCATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATCTAGGCCG
* * * * *
239091 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCGTATATATACGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGT-CATCTA-G-GCCG
* * **
239143 ATGCCATGTCTCAGACATGGTCTTATACTAGC-A-CAAC-TCTTA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATC-TAGGCCG
239189 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
239216 GGCACACAAA
Statistics
Matches: 102, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
44 9 0.09
45 13 0.13
46 6 0.06
48 1 0.01
49 36 0.35
50 4 0.04
51 1 0.01
52 32 0.31
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATCTAGGCCG
Found at i:239552 original size:213 final size:213
Alignment explanation
Indices: 239185--239587 Score: 806
Period size: 213 Copynumber: 1.9 Consensus size: 213
239175 ACAACTCTTA
239185 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACACAAATAACCCGAATGTTATGGCATGAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACACAAATAACCCGAATGTTATGGCATGAAT
239250 ATCTAGTTGGTTTCTTAAGGTTTCAACGGGATTTTTCTACTATCTCAATTATTAATATGCATTCT
66 ATCTAGTTGGTTTCTTAAGGTTTCAACGGGATTTTTCTACTATCTCAATTATTAATATGCATTCT
239315 CAGTTCACAATCTAGAAATTCACACTATATCCATTCAATGATAATTCAAATACATGCATTCTTAC
131 CAGTTCACAATCTAGAAATTCACACTATATCCATTCAATGATAATTCAAATACATGCATTCTTAC
239380 ATTAGCTCTCATAATGTG
196 ATTAGCTCTCATAATGTG
239398 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACACAAATAACCCGAATGTTATGGCATGAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACACAAATAACCCGAATGTTATGGCATGAAT
239463 ATCTAGTTGGTTTCTTAAGGTTTCAACGGGATTTTTCTACTATCTCAATTATTAATATGCATTCT
66 ATCTAGTTGGTTTCTTAAGGTTTCAACGGGATTTTTCTACTATCTCAATTATTAATATGCATTCT
239528 CAGTTCACAATCTAGAAATTCACACTATATCCATTCAATGATAATTCAAATACATGCATT
131 CAGTTCACAATCTAGAAATTCACACTATATCCATTCAATGATAATTCAAATACATGCATT
239588 AACAATGTAG
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 190 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (213 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACACAAATAACCCGAATGTTATGGCATGAAT
ATCTAGTTGGTTTCTTAAGGTTTCAACGGGATTTTTCTACTATCTCAATTATTAATATGCATTCT
CAGTTCACAATCTAGAAATTCACACTATATCCATTCAATGATAATTCAAATACATGCATTCTTAC
ATTAGCTCTCATAATGTG
Found at i:248428 original size:18 final size:18
Alignment explanation
Indices: 248401--248435 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
248391 GAGTTAAATG
*
248401 AATCGGGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
248419 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
248436 CTACTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:248503 original size:9 final size:9
Alignment explanation
Indices: 248486--248522 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
248476 TTAGTTTTTG
248486 AATTCGAAT
1 AATTCGAAT
*
248495 AACTCGAAT
1 AATTCGAAT
248504 AATTCGAAT
1 AATTCGAAT
248513 AATTCGAAT
1 AATTCGAAT
248522 A
1 A
248523 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:248622 original size:31 final size:30
Alignment explanation
Indices: 248571--248628 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
248561 AAACCTTTTT
*
248571 ACTTTCCTTCAAGACTTTTAC-CCCTTCTC
1 ACTTTCCTTCAAAACTTTTACTCCCTTCTC
248600 ACTTTCCCTTCCAAAACTTTTACTCCCTT
1 ACTTT-CCTT-CAAAACTTTTACTCCCTT
248629 TCCATCCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 5 0.20
30 4 0.16
31 11 0.44
32 5 0.20
ACGTcount: A:0.19, C:0.38, G:0.02, T:0.41
Consensus pattern (30 bp):
ACTTTCCTTCAAAACTTTTACTCCCTTCTC
Found at i:259980 original size:10 final size:10
Alignment explanation
Indices: 259950--259983 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
259940 ATTCATCATA
259950 AAATTAAAGAT
1 AAATTAAA-AT
259961 AAACTTAAAAT
1 AAA-TTAAAAT
259972 AAATTAAAAT
1 AAATTAAAAT
259982 AA
1 AA
259984 GATTTCCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 8 0.36
12 5 0.23
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:267499 original size:71 final size:67
Alignment explanation
Indices: 267422--267563 Score: 203
Period size: 67 Copynumber: 2.1 Consensus size: 67
267412 TCACCAGATA
* * *
267422 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
267487 GGCTGC
62 GGCTGC
* *
267493 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
267558 GC
66 GC
267560 CAGA
1 CAGA
267564 ATGTTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 41 0.62
71 25 0.38
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:267541 original size:27 final size:26
Alignment explanation
Indices: 267493--267544 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
267483 GCGAGGCTGC
*
267493 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
267519 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
267545 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:268031 original size:10 final size:10
Alignment explanation
Indices: 268016--268046 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
268006 ACATACCTGG
268016 TTGATGACGA
1 TTGATGACGA
268026 TTGATGACGA
1 TTGATGACGA
268036 TTGATGACGA
1 TTGATGACGA
268046 T
1 T
268047 ATCTCCCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (10 bp):
TTGATGACGA
Found at i:272384 original size:91 final size:91
Alignment explanation
Indices: 272265--272460 Score: 293
Period size: 91 Copynumber: 2.1 Consensus size: 91
272255 AGCAAATATT
* * * *
272265 AACATAAATTTACAGTCACTTAGACAACATTAATTGATGTCTAAACAACAATTTTTTTGTTGCAT
1 AACATAAA--TACAGTCACTTAGACAACATTAATTGACGCCTAAACAACAATTATTCTGTTGCAT
*
272330 TAATACACCAAACAACAGTCCTTAAAAT
64 TAATACACCAAACAACAGTCCTTAAAAG
* *
272358 AGCATAAATACAGTTACTTAGACAACATTAATTGACGCCTAAACAACAATTATTCTGTTGCATTA
1 AACATAAATACAGTCACTTAGACAACATTAATTGACGCCTAAACAACAATTATTCTGTTGCATTA
**
272423 ATACACCAAACAGTAGTCCTTAAAAG
66 ATACACCAAACAACAGTCCTTAAAAG
272449 AACATAAATACA
1 AACATAAATACA
272461 CCTCTCTGAA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
91 86 0.92
93 7 0.08
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (91 bp):
AACATAAATACAGTCACTTAGACAACATTAATTGACGCCTAAACAACAATTATTCTGTTGCATTA
ATACACCAAACAACAGTCCTTAAAAG
Found at i:281159 original size:24 final size:24
Alignment explanation
Indices: 281127--281182 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
281117 CTCATCCACT
*
281127 CCACCACCACTTAAGGCCACCAAA
1 CCACCACCACTCAAGGCCACCAAA
*
281151 CCACCACCACTCAAGGCCACCGAA
1 CCACCACCACTCAAGGCCACCAAA
281175 CCACCACC
1 CCACCACC
281183 TCACCTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.34, C:0.52, G:0.09, T:0.05
Consensus pattern (24 bp):
CCACCACCACTCAAGGCCACCAAA
Found at i:290106 original size:33 final size:33
Alignment explanation
Indices: 290064--290127 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
290054 CTTGTCTAGC
290064 TTTGGTATATAGATATTTTTATTTTGTTCAAGA
1 TTTGGTATATAGATATTTTTATTTTGTTCAAGA
290097 TTTGGTATATAGATATTTTTATTTTGTTCAA
1 TTTGGTATATAGATATTTTTATTTTGTTCAA
290128 TGGCATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.56
Consensus pattern (33 bp):
TTTGGTATATAGATATTTTTATTTTGTTCAAGA
Found at i:293756 original size:45 final size:45
Alignment explanation
Indices: 293655--293780 Score: 138
Period size: 44 Copynumber: 2.9 Consensus size: 45
293645 TTTTCTCAAA
* *
293655 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
293697 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
* * * *
293741 CTCACCAGCATTATAG-TTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
293781 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 29 0.40
45 18 0.25
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:293926 original size:43 final size:43
Alignment explanation
Indices: 293865--294316 Score: 748
Period size: 43 Copynumber: 10.5 Consensus size: 43
293855 CATCTCAAAC
293865 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
293908 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
293951 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
293994 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
294037 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
294080 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
** *
294123 AAGGCCCGAA-ATCATTTCACC-GACATTACA-CCTGCTAGGCACG
1 AAGGCCCGAATA-CACATCACCAG-CACTA-AGCCTGCTAGGCACG
** *
294166 AAGGCCCGAATACACATCACTGGCACGAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
* * * * *
294209 AAGGCCCGAATACACATCGCCGGTACGAACCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
*
294252 AAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
294295 AAGGCCCGAATACACATCACCA
1 AAGGCCCGAATACACATCACCA
294317 ACTAGACCTG
Statistics
Matches: 386, Mismatches: 17, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
42 3 0.01
43 380 0.98
44 3 0.01
ACGTcount: A:0.32, C:0.35, G:0.21, T:0.12
Consensus pattern (43 bp):
AAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACG
Found at i:295557 original size:40 final size:40
Alignment explanation
Indices: 295405--295550 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
295395 TTGAATGATG
* * * *
295405 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
295445 TCCGGACTAAGAT-CCGAAGGCAGTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
295485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
295526 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
295551 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:295557 original size:80 final size:80
Alignment explanation
Indices: 295405--295583 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
295395 TTGAATGATG
* *
295405 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAGTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCAGTT
**
295470 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * * *
295485 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAG
*
295548 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
295565 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
295584 TACATGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 59 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCAGTT
GAACGAGTAGCTAAA
Found at i:302464 original size:46 final size:46
Alignment explanation
Indices: 302414--302573 Score: 126
Period size: 46 Copynumber: 3.3 Consensus size: 46
302404 GTAGCCATGG
302414 CCCAGCCATGGTCTTACACGAATCACATATCACACTGATGCCATAT
1 CCCAGCCATGGTCTTACACGAATCACATATCACACTGATGCCATAT
** * * * *
302460 CCCAGATATGGTCTTATACGGAAGCACGTAATCACATATCTCTGATGCCATAG
1 CCCAGCCATGGTCTTACAC-GAATCACAT-ATCAC--A---CTGATGCCATAT
* * * *
302513 CCCAGCTATGGTCTTACAC-AGATCACATATCTCATTGATGCCATGGT
1 CCCAGCCATGGTCTTACACGA-ATCACATATCACACTGATGCCAT-AT
*
302560 -CCAACCATGGTCTT
1 CCCAGCCATGGTCTT
302574 TTCCATCAAT
Statistics
Matches: 89, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
46 37 0.42
47 7 0.08
48 5 0.06
49 1 0.01
50 1 0.01
51 5 0.06
52 5 0.06
53 28 0.31
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (46 bp):
CCCAGCCATGGTCTTACACGAATCACATATCACACTGATGCCATAT
Found at i:304745 original size:45 final size:45
Alignment explanation
Indices: 304644--304770 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 45
304634 TTTTCTCAAA
* * * *
304644 TCACCGACATT-TTGCCTGTTAGGCTCG-AGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCATC
*
304686 TCACCGGTATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCATC
** * *
304731 TCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
304771 ATCAAGTCAA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
42 9 0.13
43 14 0.20
44 7 0.10
45 40 0.56
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCATC
Found at i:305191 original size:42 final size:42
Alignment explanation
Indices: 305100--305224 Score: 189
Period size: 42 Copynumber: 3.0 Consensus size: 42
305090 CCAGCATTAC
* *
305100 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACAT-ACCGGCACTAA
*
305143 GCCTGCTAGGCACGAAGGGCCGAATACACATACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATACCGGCACTAA
* *
305185 GCCTGCTAGGCACGAAGGCCCGAATATA-ATACCAGCACTA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATACCGGCACTA
305225 GACCTGCGGG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
41 11 0.14
42 36 0.47
43 29 0.38
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATACCGGCACTAA
Found at i:305258 original size:38 final size:38
Alignment explanation
Indices: 305203--305286 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
305193 GGCACGAAGG
* * *
305203 CCCGAATATAATACCAGCAC-TAGACCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAG-CCTGCGAGATTTAA
*
305241 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGAGATTTAA
305279 CCCGAATA
1 CCCGAATA
305287 CACATCAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 38 0.95
39 2 0.05
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGAGATTTAA
Found at i:305851 original size:65 final size:65
Alignment explanation
Indices: 305747--305879 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 65
305737 GCATAAGTAC
*
305747 ATATCACATACCTTAATAATTTACTTTACGGAACGAATCCACATATCGTATTAGCCCATAGCCTT
1 ATATCACATACCTCAATAATTTACTTTACGGAACGAATCCACATATCGTATTAGCCCATAGCCTT
*
305812 ATATCACATACCTCAATAATTTACTTTACGGAACGAATCCACATATCGTATTAGCCCATAGTCTT
1 ATATCACATACCTCAATAATTTACTTTACGGAACGAATCCACATATCGTATTAGCCCATAGCCTT
305877 ATA
1 ATA
305880 GCACCACACT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (65 bp):
ATATCACATACCTCAATAATTTACTTTACGGAACGAATCCACATATCGTATTAGCCCATAGCCTT
Found at i:308906 original size:54 final size:53
Alignment explanation
Indices: 308825--309252 Score: 252
Period size: 54 Copynumber: 8.3 Consensus size: 53
308815 GGTTAAGTAT
* *
308825 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAGGATCCCATATAAG
* * *
308880 A-CATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATCCCATATAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAGGATCCCATATAAG
* * * *
308932 ACCATGTCAAGACATGGCATCG--GCA-TTGAT----TAAGGA-CTCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATG-AGTTCATAAGGCAAGGATC-CCATATAAG
** * * * *
308979 ACCACATCAAGATATGGCA-T--TG-G--CACTAAGACAAGGATACCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTCA-TAAGGCAAGGATCCCATATAAG
*** ** ** *
309027 ACCATGTTTGGAACATGGCATT--TG-G----TAAGATAAGGATATCATGTAAG
1 ACCATGTCAAG-ACATGGCATTGATGAGTTCATAAGGCAAGGATCCCATATAAG
* * * *** *
309074 ACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGCAAGGATCCCATATAAG
* * * * *
309128 ACTATGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGTTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAGGATCCCATATAAG
* * * ** *
309183 ACCATGACAAGGCATGGCATTGCTGAGTTCATAAGGCAAGGATATCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAGGATCCCATATAAG
309236 ACCATGTCAAGACATGG
1 ACCATGTCAAGACATGG
309253 AAATGGTAAG
Statistics
Matches: 295, Mismatches: 56, Indels: 46
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 1 0.00
46 11 0.04
47 56 0.19
48 21 0.07
49 8 0.03
50 4 0.01
51 5 0.02
52 23 0.08
53 52 0.18
54 68 0.23
55 45 0.15
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
ACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAGGATCCCATATAAG
Found at i:309029 original size:48 final size:46
Alignment explanation
Indices: 308908--309030 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 46
308898 TTGGTGAGTT
* * **
308908 CATAAGGCAAGGATCCCATATAAGACCATGTCAAGACATGGCATCGG
1 CATAAGACAAGGAT-CCATGTAAGACCACATCAAGACATGGCATCGG
* * * *
308955 CAT-TGATTAAGGACTCCATGTAAGACCACATCAAGATATGGCATTGG
1 CATAAGA-CAAGGA-TCCATGTAAGACCACATCAAGACATGGCATCGG
309002 CACTAAGACAAGGATACCATGTAAGACCA
1 CA-TAAGACAAGGAT-CCATGTAAGACCA
309031 TGTTTGGAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
46 1 0.02
47 38 0.62
48 20 0.33
49 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (46 bp):
CATAAGACAAGGATCCATGTAAGACCACATCAAGACATGGCATCGG
Found at i:309203 original size:55 final size:54
Alignment explanation
Indices: 309058--309252 Score: 257
Period size: 55 Copynumber: 3.6 Consensus size: 54
309048 TTGGTAAGAT
* * *
309058 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
309112 AAGGAAATCATGTAAGACTATGTCAAGACATCGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * ** * * *
309167 AAAGTTCCCATGTAAGACCATGACAAGGCATGGCATTGCTGAGTTC-ATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
309220 AAGGATATCATGTAAGACCATGTCAAGACATGG
1 AAGGATATCATGTAAGACCATGTCAAGACATGG
309253 AAATGGTAAG
Statistics
Matches: 118, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 34 0.29
54 40 0.34
55 44 0.37
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:309282 original size:108 final size:108
Alignment explanation
Indices: 309066--309283 Score: 287
Period size: 108 Copynumber: 2.0 Consensus size: 108
309056 ATAAGGATAT
* *
309066 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACT
1 CATGTAAGACCATGACAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
* * * * *
309131 ATGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGTTCC
66 ATGTCAAGACATCGAAATGATAAGTTAC-AAAAGGAAAAGTTCC
* * *
309175 CATGTAAGACCATGACAAGGCATGGCATTGCTGAGTTC-ATAAGGCAAGGATATCATGTAAGACC
1 CATGTAAGACCATGACAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
* *
309239 ATGTCAAGACATGGAAATGGTAAGTTTA-AAAAGGAAAAGGTTCC
66 ATGTCAAGACATCGAAATGATAAG-TTACAAAAGGAAAA-GTTCC
309283 C
1 C
309284 GGGTAATCCA
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
107 8 0.08
108 49 0.52
109 38 0.40
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGACAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
ATGTCAAGACATCGAAATGATAAGTTACAAAAGGAAAAGTTCC
Found at i:313527 original size:28 final size:28
Alignment explanation
Indices: 313487--313542 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
313477 AAACATCCTC
313487 AATTAAATCACAAACATAGCATTTGTAT
1 AATTAAATCACAAACATAGCATTTGTAT
313515 AATTAAATCACAAACATAGCATTTGTAT
1 AATTAAATCACAAACATAGCATTTGTAT
313543 GTCATGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (28 bp):
AATTAAATCACAAACATAGCATTTGTAT
Found at i:315777 original size:30 final size:30
Alignment explanation
Indices: 315743--315803 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
315733 TCCTTAACTC
315743 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
315773 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
315803 A
1 A
315804 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:320793 original size:22 final size:22
Alignment explanation
Indices: 320765--320809 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
320755 AGTGCACGGG
*
320765 TAAGTCTCACGGGCATGTGACA
1 TAAGTCTCACGAGCATGTGACA
320787 TAAGTCTCACGAGCATGTGACA
1 TAAGTCTCACGAGCATGTGACA
320809 T
1 T
320810 GGCCGTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (22 bp):
TAAGTCTCACGAGCATGTGACA
Found at i:324213 original size:28 final size:28
Alignment explanation
Indices: 324173--324229 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
324163 GAATGGAAAG
324173 TAAGTAAATGGAATGATTCATAATTTTA
1 TAAGTAAATGGAATGATTCATAATTTTA
324201 TAAGTAAATGGAATGATTCATAATTTTA
1 TAAGTAAATGGAATGATTCATAATTTTA
324229 T
1 T
324230 GAAAAGGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.14, T:0.40
Consensus pattern (28 bp):
TAAGTAAATGGAATGATTCATAATTTTA
Found at i:324600 original size:20 final size:20
Alignment explanation
Indices: 324577--324617 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
324567 CAAAACCAAT
* *
324577 AACTTAGGAAATTTTTGAAA
1 AACTTAGAAAATTTTTCAAA
324597 AACTTAGAAAATTTTTCAAA
1 AACTTAGAAAATTTTTCAAA
324617 A
1 A
324618 TACAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (20 bp):
AACTTAGAAAATTTTTCAAA
Found at i:334592 original size:44 final size:44
Alignment explanation
Indices: 334529--334628 Score: 164
Period size: 44 Copynumber: 2.3 Consensus size: 44
334519 TATGTGATTT
334529 CGTGTAAGACCACATCTGGGACGTTGGCATCAACTTCTATTTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCAACTTCTATTTTA
* * * *
334573 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTTTGTTTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCAACTTCTATTTTA
334617 CGTGTAAGACCA
1 CGTGTAAGACCA
334629 TGTTTGAGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCAACTTCTATTTTA
Found at i:334714 original size:62 final size:62
Alignment explanation
Indices: 334645--334769 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
334635 AGACATCAGC
**
334645 ATCGTATCTAATTTCATGTAAGACCCTGTTTGGGACAGTGGCATCTATGTTTGATTACATGT
1 ATCGTATCTAATTTCATGTAAGACCCTGTCAGGGACAGTGGCATCTATGTTTGATTACATGT
334707 ATCGTATCTAATTTCATGTAAGACCCTGTCAGGGACAGTGGCATCTATGTTTGATTACATGT
1 ATCGTATCTAATTTCATGTAAGACCCTGTCAGGGACAGTGGCATCTATGTTTGATTACATGT
334769 A
1 A
334770 AGACCACATC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (62 bp):
ATCGTATCTAATTTCATGTAAGACCCTGTCAGGGACAGTGGCATCTATGTTTGATTACATGT
Found at i:337050 original size:16 final size:16
Alignment explanation
Indices: 337031--337069 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
337021 AGAGAGCAGG
* *
337031 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
337047 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
337063 GGAAAAA
1 GGAAAAA
337070 GGGGAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:339383 original size:18 final size:18
Alignment explanation
Indices: 339356--339638 Score: 173
Period size: 18 Copynumber: 15.3 Consensus size: 18
339346 AAAGGTATAA
* *
339356 AATAACTGACTATTACTG
1 AATAATTGACTGTTACTG
*
339374 AATAATTGACTGTTACCG
1 AATAATTGACTGTTACTG
* *
339392 GATACTTGACTGTTACTG
1 AATAATTGACTGTTACTG
*
339410 GAT-ATTAGACTGTTACTG
1 AATAATT-GACTGTTACTG
* * *
339428 AATAACTGAATATTACTG
1 AATAATTGACTGTTACTG
*
339446 AATAATTGA-TCATTACTG
1 AATAATTGACT-GTTACTG
* * *
339464 AATAAGTGATTGTCACTG
1 AATAATTGACTGTTACTG
339482 AATGAA-TGACTGTTACTG
1 AAT-AATTGACTGTTACTG
* *
339500 AATAACTTAATTGTTACTG
1 AATAA-TTGACTGTTACTG
*
339519 AAT-ATCTGA-TTTTACTG
1 AATAAT-TGACTGTTACTG
*
339536 AATAATTAACTGTTACTGG
1 AATAATTGACTGTTACT-G
*
339555 ATAACCGATCAATTGA-TCGATACTG
1 ---A---AT-AATTGACT-GTTACTG
* * * *
339580 AATAACTGGCTATTATTG
1 AATAATTGACTGTTACTG
* *
339598 AATAATTGATTGTTACCG
1 AATAATTGACTGTTACTG
*
339616 AATAACTGACTGTTACTG
1 AATAATTGACTGTTACTG
339634 AATAA
1 AATAA
339639 ATAATTGTTC
Statistics
Matches: 206, Mismatches: 39, Indels: 40
0.72 0.14 0.14
Matches are distributed among these distances:
17 18 0.09
18 150 0.73
19 22 0.11
22 2 0.01
25 4 0.02
26 10 0.05
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (18 bp):
AATAATTGACTGTTACTG
Found at i:339646 original size:36 final size:36
Alignment explanation
Indices: 339579--339647 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
339569 GATCGATACT
* * * *
339579 GAATAACTGGCTATTATTGAATAATTGATTGTTACC
1 GAATAACTGACTATTACTGAATAAATAATTGTTACC
*
339615 GAATAACTGACTGTTACTGAATAAATAATTGTT
1 GAATAACTGACTATTACTGAATAAATAATTGTT
339648 CTGATTGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (36 bp):
GAATAACTGACTATTACTGAATAAATAATTGTTACC
Found at i:342486 original size:43 final size:44
Alignment explanation
Indices: 342389--342558 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 44
342379 CATAGGATTC
* * * * *
342389 CGATATGTGATTT-TGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATATGATTTACGTGTAAGACCATGTCTGGGACATTGGCCT
* * * * *
342432 CAATTTTTGATTTACGTGTAAGACCTTGTCTAGGACATTGGCCT
1 CGATATATGATTTACGTGTAAGACCATGTCTGGGACATTGGCCT
* * * *
342476 CG-TATATGATTT-TGTGTAAGACCCTGTCTGGGACAGTGGCTT
1 CGATATATGATTTACGTGTAAGACCATGTCTGGGACATTGGCCT
* * *
342518 CGATATTTGA-TTACATGTAAGACCATGTCTGGGACGTTGGC
1 CGATATATGATTTACGTGTAAGACCATGTCTGGGACATTGGC
342559 GTTGTACGAG
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
42 29 0.29
43 47 0.47
44 25 0.25
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (44 bp):
CGATATATGATTTACGTGTAAGACCATGTCTGGGACATTGGCCT
Found at i:342527 original size:86 final size:85
Alignment explanation
Indices: 342396--342558 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
342386 TTCCGATATG
* * *
342396 TGATTTTGTGTAAGACCACGTCTGGGACGTTGGCATCAATTTTTGATTTACGTGTAAGACCTTGT
1 TGATTTTGTGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGA-TTACATGTAAGACCATGT
342461 CTAGGACATTGGCCTCGTATA
65 CTAGGACATTGGCCTCGTATA
* *
342482 TGATTTTGTGTAAGACC-CTGTCTGGGACAG-TGGCTTCGATATTTGATTACATGTAAGACCATG
1 TGATTTTGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCAATATTTGATTACATGTAAGACCATG
* *
342545 TCTGGGACGTTGGC
64 TCTAGGACATTGGC
342559 GTTGTACGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 28 0.41
86 39 0.57
87 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.35
Consensus pattern (85 bp):
TGATTTTGTGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACATGTAAGACCATGTC
TAGGACATTGGCCTCGTATA
Found at i:348929 original size:43 final size:43
Alignment explanation
Indices: 348848--348929 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
348838 GAGATATGTG
* *
348848 GCATCCGAGCTCGTTGAAAGGTCTGAGTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAAAGGTCCGAGTTCATGATGGATACGA
* * *
348891 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATGGTGGAT
1 GCATCCGAGCTCGTTGAAAGGTCCGAGTTCATGATGGAT
348930 GCTATTCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAAAGGTCCGAGTTCATGATGGATACGA
Found at i:354085 original size:42 final size:42
Alignment explanation
Indices: 353979--354139 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
353969 CGTACCAATG
* * * *
353979 CCATATCCCAGATATAGTCTTACATGTAA-TCTCGTATCGATG
1 CCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCGATT
* *
354021 CCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCGATT
1 CC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATT
* * *
354064 CCATATCCCAGATATGGTCTTACACGTAGTCTCATATTGGTGT
1 CCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGAT-T
*
354107 -CATATCCCAGATATGGTCTTACACGTAGTCTCA
1 CCATATCCCAGATATGGTCTTACACGAAGTCTCA
354140 GTAACCCTAA
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 71 0.68
43 34 0.32
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATT
Found at i:370759 original size:23 final size:23
Alignment explanation
Indices: 370725--370788 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
370715 AAGAACGAAA
*
370725 TAAAAATTAAA-CTATAATTACAAT
1 TAAAAA-TAAACCTA-AATTACAAG
*
370749 TGAAAATAAACCTAAATTACAAG
1 TAAAAATAAACCTAAATTACAAG
*
370772 TAAAAATAAAACTAAAT
1 TAAAAATAAACCTAAAT
370789 AGGAAACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 27 0.77
24 8 0.23
ACGTcount: A:0.61, C:0.09, G:0.03, T:0.27
Consensus pattern (23 bp):
TAAAAATAAACCTAAATTACAAG
Found at i:372840 original size:14 final size:14
Alignment explanation
Indices: 372821--372847 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
372811 ACAGAGTGAT
372821 TTCTGGATCCCCTG
1 TTCTGGATCCCCTG
372835 TTCTGGATCCCCT
1 TTCTGGATCCCCT
372848 TTGGATAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.37, G:0.19, T:0.37
Consensus pattern (14 bp):
TTCTGGATCCCCTG
Found at i:377381 original size:23 final size:23
Alignment explanation
Indices: 377347--377410 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
377337 AAGAACGAAA
*
377347 TAAAAATTAAA-CTATAATTACAAT
1 TAAAAA-TAAACCTA-AATTACAAG
*
377371 TGAAAATAAACCTAAATTACAAG
1 TAAAAATAAACCTAAATTACAAG
*
377394 TAAAAATAAAACTAAAT
1 TAAAAATAAACCTAAAT
377411 AGGAAACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 27 0.77
24 8 0.23
ACGTcount: A:0.61, C:0.09, G:0.03, T:0.27
Consensus pattern (23 bp):
TAAAAATAAACCTAAATTACAAG
Found at i:380133 original size:9 final size:9
Alignment explanation
Indices: 380119--380144 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
380109 TTTCCCCCCT
380119 TTTTTTTTC
1 TTTTTTTTC
380128 TTTTTTTTC
1 TTTTTTTTC
380137 TTTTTTTT
1 TTTTTTTT
380145 GTTATACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:382559 original size:30 final size:31
Alignment explanation
Indices: 382511--382573 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
382501 TAGTAAAGGT
* *
382511 AAAATTATATTTTGATTCTTTTA-AAATTATA
1 AAAATTATAATTTAATTC-TTTACAAATTATA
382542 AAAATT-TAATTTAATTCTTTACAAATTATA
1 AAAATTATAATTTAATTCTTTACAAATTATA
382572 AA
1 AA
382574 GATATAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 4 0.14
30 19 0.66
31 6 0.21
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (31 bp):
AAAATTATAATTTAATTCTTTACAAATTATA
Found at i:383042 original size:21 final size:21
Alignment explanation
Indices: 383016--383057 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
383006 GGGAGAAATA
*
383016 AGAATGACTAGATCAAGCCCT
1 AGAATGACTAAATCAAGCCCT
383037 AGAATGACTAAATCAAGCCCT
1 AGAATGACTAAATCAAGCCCT
383058 TCACCATGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (21 bp):
AGAATGACTAAATCAAGCCCT
Found at i:385887 original size:42 final size:42
Alignment explanation
Indices: 385728--385889 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
385718 TACCGTACCA
* * * * * * *
385728 ATGCCATATCCTAGTTATAGTCTTACATGTAATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * **
385770 ATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * *
385813 ATTCCATATCCCAGATATGGTCTTACATGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
*
385855 GTGCCATATCCCAGATATGGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
385890 TAGTAACCCT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 68 0.69
43 31 0.31
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:387093 original size:22 final size:22
Alignment explanation
Indices: 387064--387123 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 22
387054 CCAAACTCGA
387064 AGCT-GTGTGAGCCCATTTCAC
1 AGCTCGTGTGAGCCCATTTCAC
387085 AGCTCGTGTGAGTAAGCCCATTTCAC
1 AGCTCGTGT--G--AGCCCATTTCAC
*
387111 AACTCGTGTGAGC
1 AGCTCGTGTGAGC
387124 AATAATGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
21 4 0.12
22 7 0.21
24 2 0.06
26 20 0.61
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (22 bp):
AGCTCGTGTGAGCCCATTTCAC
Found at i:387102 original size:26 final size:26
Alignment explanation
Indices: 387073--387122 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
387063 AAGCTGTGTG
*
387073 AGCCCATTTCACAGCTCGTGTGAGTA
1 AGCCCATTTCACAACTCGTGTGAGTA
387099 AGCCCATTTCACAACTCGTGTGAG
1 AGCCCATTTCACAACTCGTGTGAG
387123 CAATAATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
AGCCCATTTCACAACTCGTGTGAGTA
Found at i:387547 original size:22 final size:22
Alignment explanation
Indices: 387517--387558 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
387507 ACGACTTTCT
387517 CTTTACCTTGAATAACAATCAC
1 CTTTACCTTGAATAACAATCAC
* *
387539 CTTTCCCTTGATTAACAATC
1 CTTTACCTTGAATAACAATC
387559 GCTCTACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.36
Consensus pattern (22 bp):
CTTTACCTTGAATAACAATCAC
Found at i:389633 original size:32 final size:35
Alignment explanation
Indices: 389592--389669 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 35
389582 TATTAAAGGG
*
389592 AAAAAAATAT-AAAATT-T-AA-ATTCAAATATAA
1 AAAAAAATATAAAAATTATAAATATTAAAATATAA
389623 CAAAAAAATATAAAAATTATACAATATTAAAATATAA
1 -AAAAAAATATAAAAATTATA-AATATTAAAATATAA
389660 AAAAAAATAT
1 AAAAAAATAT
389670 TCTTACCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
32 10 0.25
33 6 0.15
34 1 0.03
36 12 0.30
37 11 0.28
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (35 bp):
AAAAAAATATAAAAATTATAAATATTAAAATATAA
Found at i:395445 original size:27 final size:27
Alignment explanation
Indices: 395391--395462 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
395381 AAACAAAAGT
395391 ACAAATACCAAAGT-AA-TTTTTTTTTG
1 ACAAA-ACCAAAGTAAACTTTTTTTTTG
395417 ACAAAACCAAAGTAAACTTTTTTTTTG
1 ACAAAACCAAAGTAAACTTTTTTTTTG
*
395444 ACAAAATCAAAGTAAACTT
1 ACAAAACCAAAGTAAACTT
395463 AATTGTTAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
25 8 0.19
26 7 0.16
27 28 0.65
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (27 bp):
ACAAAACCAAAGTAAACTTTTTTTTTG
Found at i:407720 original size:16 final size:16
Alignment explanation
Indices: 407699--407729 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
407689 ATCGGCAAAA
*
407699 GCCGAAATGTCGAAAT
1 GCCGAAAAGTCGAAAT
407715 GCCGAAAAGTCGAAA
1 GCCGAAAAGTCGAAA
407730 CTTTGGCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (16 bp):
GCCGAAAAGTCGAAAT
Found at i:408020 original size:29 final size:30
Alignment explanation
Indices: 407952--408048 Score: 112
Period size: 29 Copynumber: 3.4 Consensus size: 30
407942 TGAATGTAAC
*
407952 TGGGCCTAA-CAAGCCATATAAATGTGATT
1 TGGGCCTAATGAAGCCATATAAATGTGATT
*
407981 TGGGCCTAATGAA-CCATATACATGTGATT
1 TGGGCCTAATGAAGCCATATAAATGTGATT
* * *
408010 TGGGCCTAATG-GGCCATATGAATATGA-T
1 TGGGCCTAATGAAGCCATATAAATGTGATT
*
408038 TGGGCTTAATG
1 TGGGCCTAATG
408049 GGCCAGATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.19
29 46 0.78
30 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (30 bp):
TGGGCCTAATGAAGCCATATAAATGTGATT
Found at i:412261 original size:33 final size:33
Alignment explanation
Indices: 412223--412288 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
412213 TAAGTTACAG
412223 AATAAGACCATAACCGGGCTATGGCTATC-GAAT
1 AATAAGACCATAACCGGGCTATGGC-ATCTGAAT
* *
412256 AATAAGACCATAACTGGGTTATGGCATCTGAAT
1 AATAAGACCATAACCGGGCTATGGCATCTGAAT
412289 GAAAGATCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 27 0.90
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (33 bp):
AATAAGACCATAACCGGGCTATGGCATCTGAAT
Done.