Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 101 of 161
Found at i:31985212 original size:58 final size:58
Alignment explanation
Indices: 31985142--31985263 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 58
31985132 CACCATCGCA
* * * *
31985142 TTTCATAATCGATAGCCGAAGCTATTCCTTTTCATATTTGATAGCCGAAGCTATCCCT
1 TTTCATAATCGATAACCGAAGCTATCCCTTTTCATATTTGATAACCAAAGCTATCCCT
* *
31985200 TTTCATATTCGATAACTGAAGCTATCCCTTTTCATATTTGATAACCAAAGCTATCCCT
1 TTTCATAATCGATAACCGAAGCTATCCCTTTTCATATTTGATAACCAAAGCTATCCCT
31985258 TTTCAT
1 TTTCAT
31985264 TGGTCGATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.39
Consensus pattern (58 bp):
TTTCATAATCGATAACCGAAGCTATCCCTTTTCATATTTGATAACCAAAGCTATCCCT
Found at i:31985243 original size:29 final size:29
Alignment explanation
Indices: 31985142--31985263 Score: 172
Period size: 29 Copynumber: 4.2 Consensus size: 29
31985132 CACCATCGCA
* * * *
31985142 TTTCATAATCGATAGCCGAAGCTATTCCT
1 TTTCATATTTGATAACCGAAGCTATCCCT
*
31985171 TTTCATATTTGATAGCCGAAGCTATCCCT
1 TTTCATATTTGATAACCGAAGCTATCCCT
* *
31985200 TTTCATATTCGATAACTGAAGCTATCCCT
1 TTTCATATTTGATAACCGAAGCTATCCCT
*
31985229 TTTCATATTTGATAACCAAAGCTATCCCT
1 TTTCATATTTGATAACCGAAGCTATCCCT
31985258 TTTCAT
1 TTTCAT
31985264 TGGTCGATGA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.39
Consensus pattern (29 bp):
TTTCATATTTGATAACCGAAGCTATCCCT
Found at i:31987611 original size:30 final size:30
Alignment explanation
Indices: 31987575--31987667 Score: 145
Period size: 29 Copynumber: 3.2 Consensus size: 30
31987565 GAAATTTTAT
31987575 TCGATGGTCATCACCATCCCTTTTCATTAA
1 TCGATGGTCATCACCATCCCTTTTCATTAA
*
31987605 TCGATGGTCATCACCATCCCTTTTCA-TAG
1 TCGATGGTCATCACCATCCCTTTTCATTAA
* *
31987634 TTGATGGTCATCACCATTCCTTTTCATT-A
1 TCGATGGTCATCACCATCCCTTTTCATTAA
31987663 TCGAT
1 TCGAT
31987668 AGCCAAAGTT
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
29 30 0.53
30 27 0.47
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.39
Consensus pattern (30 bp):
TCGATGGTCATCACCATCCCTTTTCATTAA
Found at i:31987684 original size:29 final size:30
Alignment explanation
Indices: 31987652--31987834 Score: 148
Period size: 29 Copynumber: 6.3 Consensus size: 30
31987642 CATCACCATT
*
31987652 CCTTTTCATTA-TCGATAGCCAAAGTTATC
1 CCTTTTCATTATTCGATAGCCAAAGCTATC
* *
31987681 CCTTTTCA-TATTTGATAGCCGAAGCTATC
1 CCTTTTCATTATTCGATAGCCAAAGCTATC
* *** * *
31987710 CCTTTTCA-TATTCGATGGTCGTCA-CTGTA
1 CCTTTTCATTATTCGATAG-CCAAAGCTATC
* * * **
31987739 CCATTTCA-TAATCGATATCCGGAGCTA-C
1 CCTTTTCATTATTCGATAGCCAAAGCTATC
31987767 CCTTTTCA-TATTCGATAGCCAAAGCTATC
1 CCTTTTCATTATTCGATAGCCAAAGCTATC
* **
31987796 CCTTTTC-TTATTTGATAGCTGAAGCTATC
1 CCTTTTCATTATTCGATAGCCAAAGCTATC
31987825 CCTTTTCATT
1 CCTTTTCATT
31987835 GGTCGATGAT
Statistics
Matches: 121, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
28 26 0.21
29 91 0.75
30 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (30 bp):
CCTTTTCATTATTCGATAGCCAAAGCTATC
Found at i:31987727 original size:87 final size:85
Alignment explanation
Indices: 31987620--31987807 Score: 232
Period size: 87 Copynumber: 2.2 Consensus size: 85
31987610 GGTCATCACC
* * * *
31987620 ATCCCTTTTCATAGTTGATGGTCATCACCATTCCTTTTCATTATCGATAGCCAAAGTTATCCCTT
1 ATCCCTTTTCATA-TTGATGGTCATCACCATACCATTTCATAATCGATAGCCAAAGCTA-CCCTT
* *
31987685 TTCATATTTGATAGCCGAAGCT
64 TTCATATTCGATAGCCAAAGCT
* ** * **
31987707 ATCCCTTTTCATATTCGATGGTCGTCACTGTACCATTTCATAATCGATATCCGGAGCTACCCTTT
1 ATCCCTTTTCATATT-GATGGTCATCACCATACCATTTCATAATCGATAGCCAAAGCTACCCTTT
31987772 TCATATTCGATAGCCAAAGCT
65 TCATATTCGATAGCCAAAGCT
*
31987793 ATCCCTTTTCTTATT
1 ATCCCTTTTCATATT
31987808 TGATAGCTGA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
86 41 0.47
87 46 0.53
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (85 bp):
ATCCCTTTTCATATTGATGGTCATCACCATACCATTTCATAATCGATAGCCAAAGCTACCCTTTT
CATATTCGATAGCCAAAGCT
Found at i:31987832 original size:86 final size:87
Alignment explanation
Indices: 31987620--31987833 Score: 202
Period size: 86 Copynumber: 2.5 Consensus size: 87
31987610 GGTCATCACC
* * * * * * *
31987620 ATCCCTTTTCATAGTT-GATGGTCATCACCATTCCTTTTCATTATCGATAGCCAAAGTTATCCCT
1 ATCCCTTTTCATA-TTCGATGCTCGTAACTATACCTTTTCATAATCGATAGCCAAAGCTATCCCT
* *
31987684 TTTCATATTTGATAGCCGAAGCT
65 TTTCATATTCGATAGCCAAAGCT
* * * * * **
31987707 ATCCCTTTTCATATTCGATGGTCGTCACTGTACCATTTCATAATCGATATCCGGAGCTA-CCCTT
1 ATCCCTTTTCATATTCGATGCTCGTAACTATACCTTTTCATAATCGATAGCCAAAGCTATCCCTT
31987771 TTCATATTCGATAGCCAAAGCT
66 TTCATATTCGATAGCCAAAGCT
* * *
31987793 ATCCCTTTTCTTATTTGATAGCT-G-AAGCTATCCCTTTTCAT
1 ATCCCTTTTCATATTCGAT-GCTCGTAA-CTATACCTTTTCAT
31987834 TGGTCGATGA
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
85 1 0.01
86 56 0.53
87 48 0.46
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATGCTCGTAACTATACCTTTTCATAATCGATAGCCAAAGCTATCCCTT
TTCATATTCGATAGCCAAAGCT
Found at i:31998600 original size:16 final size:17
Alignment explanation
Indices: 31998579--31998611 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
31998569 TTGAGCAAGT
*
31998579 ATAATG-TATTTGGTTA
1 ATAATGTTATTTAGTTA
31998595 ATAATGTTATTTAGTTA
1 ATAATGTTATTTAGTTA
31998612 TGACATGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (17 bp):
ATAATGTTATTTAGTTA
Found at i:32007627 original size:26 final size:26
Alignment explanation
Indices: 32007596--32007650 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
32007586 AACACACCAA
32007596 TATTGCAGCAAAGTTACCAGTAATAG
1 TATTGCAGCAAAGTTACCAGTAATAG
32007622 TATTGCAGCAAAGTTACCAGTAATAG
1 TATTGCAGCAAAGTTACCAGTAATAG
32007648 TAT
1 TAT
32007651 ATGTGGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (26 bp):
TATTGCAGCAAAGTTACCAGTAATAG
Found at i:32007863 original size:27 final size:26
Alignment explanation
Indices: 32007840--32007983 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 26
32007830 AAAGGTATAA
32007840 TAGTCATTTTACCCTACGGGGGTATTT
1 TAGTCATTTTACCCTACGGGGGTA-TT
* *
32007867 TGGTCATTTTACCTTACGGGGGTATT
1 TAGTCATTTTACCCTACGGGGGTATT
* **
32007893 TCGCTCATTTTACCCTATAGGGGTACTT
1 TAG-TCATTTTACCCTACGGGGGTA-TT
** * * *
32007921 CGGTCATTTTACCCTATGAGAGTATT
1 TAGTCATTTTACCCTACGGGGGTATT
** *
32007947 CCGGTCATTTTACCCTATGGGGGTATT
1 -TAGTCATTTTACCCTACGGGGGTATT
*
32007974 TCAATCATTT
1 T-AGTCATTT
32007984 ATTGACCTCT
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.06
27 88 0.91
28 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
TAGTCATTTTACCCTACGGGGGTATT
Found at i:32007983 original size:54 final size:54
Alignment explanation
Indices: 32007842--32007975 Score: 178
Period size: 54 Copynumber: 2.5 Consensus size: 54
32007832 AGGTATAATA
* * * * * *
32007842 GTCATTTTACCCTACGGGGGTATTTTGGTCATTTTACCTTACGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTACGAGAGTATTCCG
* * * *
32007896 CTCATTTTACCCTATAGGGGTACTTCGGTCATTTTACCCTATGAGAGTATTCCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTACGAGAGTATTCCG
32007950 GTCATTTTACCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
32007976 AATCATTTAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTACGAGAGTATTCCG
Found at i:32009987 original size:20 final size:18
Alignment explanation
Indices: 32009962--32010008 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
32009952 AAACAATTAT
*
32009962 AAAAAACTAAAGAATATATA
1 AAAAAACTAAA-AA-ATAGA
32009982 AAAAAACTTAAAAAATAGA
1 AAAAAAC-TAAAAAATAGA
32010001 AAAAAACT
1 AAAAAACT
32010009 CTAAACCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 11 0.44
20 9 0.36
21 4 0.16
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.17
Consensus pattern (18 bp):
AAAAAACTAAAAAATAGA
Found at i:32009993 original size:21 final size:19
Alignment explanation
Indices: 32009962--32010013 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
32009952 AAACAATTAT
*
32009962 AAAAAAC-TAAAGAATATATA
1 AAAAAACTTAAA-AA-ATAGA
32009982 AAAAAACTTAAAAAATAGA
1 AAAAAACTTAAAAAATAGA
32010001 AAAAAACTCTAAA
1 AAAAAACT-TAAA
32010014 CCCTAAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.41
20 13 0.45
21 4 0.14
ACGTcount: A:0.71, C:0.08, G:0.04, T:0.17
Consensus pattern (19 bp):
AAAAAACTTAAAAAATAGA
Found at i:32030266 original size:40 final size:40
Alignment explanation
Indices: 32030222--32030301 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
32030212 ACACGTTCAG
* *
32030222 GGGTACTAAAGTACAAAAAGGGGCATGTATGTGCAAACAT
1 GGGTACCAAAGTACAAAAAGGGGCACGTATGTGCAAACAT
* **
32030262 GGGTACCGAAGTACAATCAGGGGCACGTATGTGCAAACAT
1 GGGTACCAAAGTACAAAAAGGGGCACGTATGTGCAAACAT
32030302 TCAATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (40 bp):
GGGTACCAAAGTACAAAAAGGGGCACGTATGTGCAAACAT
Found at i:32032231 original size:28 final size:28
Alignment explanation
Indices: 32032187--32032276 Score: 137
Period size: 28 Copynumber: 3.2 Consensus size: 28
32032177 TATACAGTAT
* *
32032187 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGAGCCTTAGCCCAATA
32032214 CAGTAACAGTGTGAGCCTTAGCCCAATA
1 CAGTAACAGTGTGAGCCTTAGCCCAATA
* *
32032242 TAGTAACAATGTGAGCCTTAGCCCAATA
1 CAGTAACAGTGTGAGCCTTAGCCCAATA
32032270 CAGTAAC
1 CAGTAAC
32032277 CAGTACAATG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 4 0.07
28 53 0.93
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGAGCCTTAGCCCAATA
Found at i:32032406 original size:26 final size:26
Alignment explanation
Indices: 32032377--32032427 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32032367 CCAACACACC
* *
32032377 AATATCGCAGCAAAGCTGCCAGTAAT
1 AATAACGCAACAAAGCTGCCAGTAAT
32032403 AATAACGCAACAAAGCTGCCAGTAA
1 AATAACGCAACAAAGCTGCCAGTAA
32032428 CAGTATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.24, G:0.18, T:0.16
Consensus pattern (26 bp):
AATAACGCAACAAAGCTGCCAGTAAT
Found at i:32032645 original size:27 final size:27
Alignment explanation
Indices: 32032600--32032821 Score: 236
Period size: 27 Copynumber: 8.2 Consensus size: 27
32032590 CATAACGGTC
*
32032600 ATTTTACCCCTTC-AGGGGTATTTTAGTC
1 ATTTTA-CCCTTCGA-GGGTATTTTAGTA
*
32032628 ATTTTACCCTTCGAGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTTAGTA
** *
32032655 ATTTTACCCTTTAAGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTTAGTA
* *
32032682 A-TTTACCCTTCGAGGGAATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTTAGTA
* *
32032708 ATTTTACTCTTCGAGTGTATTTT-GTTA
1 ATTTTACCCTTCGAGGGTATTTTAG-TA
*
32032735 ATTTTACCCTTCGAGGGTA-TTTCGATA
1 ATTTTACCCTTCGAGGGTATTTTAG-TA
* *
32032762 ATTTTACCCTTTGAGTGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTTAGTA
* * * *
32032789 ATTTTACCATTCGAGGGCATTTCAGAA
1 ATTTTACCCTTCGAGGGTATTTTAGTA
32032816 ATTTTA
1 ATTTTA
32032822 TCCTATAGGA
Statistics
Matches: 165, Mismatches: 24, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
26 25 0.15
27 129 0.78
28 11 0.07
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTTAGTA
Found at i:32032836 original size:107 final size:107
Alignment explanation
Indices: 32032628--32032826 Score: 276
Period size: 107 Copynumber: 1.9 Consensus size: 107
32032618 TATTTTAGTC
*
32032628 ATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCAGTAATTTACCCTTC
1 ATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCAGTAATTTACCATTC
** * * *
32032693 GAGGGAATTTTGGTAATTTTACTCTTCGAGTGTATTTTGTTA
66 GAGGGAATTTCAGAAATTTTACTCCTAGAGTGTATTTTGTTA
* * *
32032735 ATTTTACCCTTCGAGGGTATTTC-GATAATTTTACCCTTTGAGTGTATTTTAGTAATTTTACCAT
1 ATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTTAAGGGTATTTCAGTAA-TTTACCAT
*
32032799 TCGAGGGCATTTCAGAAATTTTA-TCCTA
64 TCGAGGGAATTTCAGAAATTTTACTCCTA
32032827 TAGGATATTT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
106 1 0.01
107 53 0.66
108 26 0.32
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.44
Consensus pattern (107 bp):
ATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCAGTAATTTACCATTC
GAGGGAATTTCAGAAATTTTACTCCTAGAGTGTATTTTGTTA
Found at i:32032872 original size:27 final size:27
Alignment explanation
Indices: 32032832--32032931 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
32032822 TCCTATAGGA
* *
32032832 TATTTCGATCATTCTACGTTATGGGGG
1 TATTTCGGTCATTCTACCTTATGGGGG
* * *
32032859 TATTTCGGTTATTCTACCCTATAGGGG
1 TATTTCGGTCATTCTACCTTATGGGGG
*
32032886 TATTTCGGTCATTCTACCTTATGAGGG
1 TATTTCGGTCATTCTACCTTATGGGGG
* *
32032913 TATTTTGGTCATTTTACCT
1 TATTTCGGTCATTCTACCT
32032932 AATTTAGGGT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (27 bp):
TATTTCGGTCATTCTACCTTATGGGGG
Found at i:32039099 original size:12 final size:12
Alignment explanation
Indices: 32039082--32039108 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32039072 TACACGCCCA
32039082 TGTGCTAGGCCG
1 TGTGCTAGGCCG
32039094 TGTGCTAGGCCG
1 TGTGCTAGGCCG
32039106 TGT
1 TGT
32039109 AATAGCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.30
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:32039285 original size:29 final size:29
Alignment explanation
Indices: 32039242--32039304 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
32039232 TTACAAGCCA
* * *
32039242 CTCACACTATTTGATTCAATACGAAGTGT
1 CTCACACAATCTGATTCAATACGAAATGT
*
32039271 TTCACACAATCTGATTCAATACGAAATGT
1 CTCACACAATCTGATTCAATACGAAATGT
32039300 CTCAC
1 CTCAC
32039305 CTTTCTGACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (29 bp):
CTCACACAATCTGATTCAATACGAAATGT
Found at i:32040753 original size:12 final size:12
Alignment explanation
Indices: 32040718--32040753 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32040708 GAAAAATTTA
*
32040718 ATAATAATATAA
1 ATAATAATATAT
*
32040730 ATGATAATATAT
1 ATAATAATATAT
32040742 ATAATAATATAT
1 ATAATAATATAT
32040754 TTAAAGTCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:32041550 original size:20 final size:20
Alignment explanation
Indices: 32041513--32041552 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32041503 GCTGCGCCTC
*
32041513 TCCTTTTCTTTTTCCTTTTT
1 TCCTTTTCTTTCTCCTTTTT
32041533 TCCTTTTC-TTCTCTCTTTTT
1 TCCTTTTCTTTCTC-CTTTTT
32041553 CTCTCATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (20 bp):
TCCTTTTCTTTCTCCTTTTT
Found at i:32046590 original size:12 final size:12
Alignment explanation
Indices: 32046555--32046590 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32046545 GAAAAATTTA
*
32046555 ATAATAATATAA
1 ATAATAATATAT
*
32046567 ATGATAATATAT
1 ATAATAATATAT
32046579 ATAATAATATAT
1 ATAATAATATAT
32046591 TTAAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:32051256 original size:30 final size:30
Alignment explanation
Indices: 32051220--32051418 Score: 138
Period size: 30 Copynumber: 6.7 Consensus size: 30
32051210 AATCGAAGTT
* *
32051220 ATCCC-TTTCATAGTTCGATAGCCAAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCC
* * * * **
32051249 ATCCCCTTTCATAATTTGATGGTCCTCA-CC
1 ATCCCTTTTCATAGTTCGATAG-CCGAAGCC
* * * * *
32051279 ATCCTTTTTCATAATTTGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCC
* *
32051309 ATCCATTTTCATAGATCGATAGCCGAAGCC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCC
* ** *
32051339 ATCCCTTTTCATAGTTCGATGGTTGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGCCG-AAGCC
*
32051369 ATCCCTTTTCAT--TATCGATAGCCGAAGCT
1 ATCCCTTTTCATAGT-TCGATAGCCGAAGCC
**
32051398 ATCCCTTTTCATTCTTCGATA
1 ATCCCTTTTCATAGTTCGATA
32051419 ATCGACATTA
Statistics
Matches: 132, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
28 2 0.02
29 27 0.20
30 98 0.74
31 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAGCCGAAGCC
Found at i:32051343 original size:90 final size:88
Alignment explanation
Indices: 32051212--32051409 Score: 243
Period size: 90 Copynumber: 2.2 Consensus size: 88
32051202 AATTCCATAA
* * * * *
32051212 TCGAAGTTATCCCTTTCATAGTTCGATAGCCAAAGCTATCCCCTTTCATAATTTGATGGTCCTCA
1 TCGAAGCTATCCTTTTCATAGATCGATAGCCAAAGCCATCCCCTTTCATAATTCGATGGTCCTCA
* *
32051277 CCATCCTTTTTCATAATTTGATAG
66 CCATCCCTTTTCATAA-TCGATAG
* * * **
32051301 TCGAAGCTATCCATTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCATAGTTCGATGGTTGTC
1 TCGAAGCTATCC-TTTTCATAGATCGATAGCCAAAGCCATCCCCTTTCATAATTCGATGGTCCTC
*
32051366 ACCATCCCTTTTCATTATCGATAG
65 ACCATCCCTTTTCATAATCGATAG
*
32051390 CCGAAGCTATCCCTTTTCAT
1 TCGAAGCTAT-CCTTTTCAT
32051410 TCTTCGATAA
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
89 33 0.35
90 60 0.65
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (88 bp):
TCGAAGCTATCCTTTTCATAGATCGATAGCCAAAGCCATCCCCTTTCATAATTCGATGGTCCTCA
CCATCCCTTTTCATAATCGATAG
Found at i:32053347 original size:18 final size:19
Alignment explanation
Indices: 32053324--32053361 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
32053314 AGGTTTTGTA
*
32053324 TTTAAACCAA-AACCATTT
1 TTTAAAACAACAACCATTT
*
32053342 TTTAAAACAACAACTATTT
1 TTTAAAACAACAACCATTT
32053361 T
1 T
32053362 GAATTTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTAAAACAACAACCATTT
Found at i:32062584 original size:41 final size:41
Alignment explanation
Indices: 32062528--32062650 Score: 133
Period size: 41 Copynumber: 3.0 Consensus size: 41
32062518 ATAATCACAT
* *
32062528 ATCGATGCTAGTGTCCCAGACAGGGTCTTACACGA-AACAA
1 ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAGAACAA
* *
32062568 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAGTACAA
1 AT-CGATGCCAATGTCCCAGACAGGGTCTTACACG-AGAACAA
* * * *
32062611 GTCGATGACAACGTCCCAGAC-GTGGTCTTACACGATAACA
1 ATCGATGCCAATGTCCCAGACAG-GGTCTTACACGAGAACA
32062651 TATATCAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
40 2 0.03
41 33 0.48
42 29 0.42
43 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
ATCGATGCCAATGTCCCAGACAGGGTCTTACACGAGAACAA
Found at i:32062630 original size:42 final size:41
Alignment explanation
Indices: 32062540--32062650 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 41
32062530 CGATGCTAGT
* * *
32062540 GTCCCAGACAGGGTCTTACACGAAACAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACACGAAACAAATACGATGACAAC
* *
32062581 GTCCCAGACATGGTCTTACACGTAGTACAAGT-CGATGACAAC
1 GTCCCAGACATGGTCTTACACG-A-AACAAATACGATGACAAC
*
32062623 GTCCCAGACGTGGTCTTACACGATAACA
1 GTCCCAGACATGGTCTTACACGA-AACA
32062651 TATATCAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 25 0.42
42 30 0.50
43 5 0.08
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACACGAAACAAATACGATGACAAC
Found at i:32067008 original size:49 final size:49
Alignment explanation
Indices: 32066951--32067044 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
32066941 TACCATGCAA
* * *
32066951 TGCTAAACTTGTTCTTCCACTATCTACACTCTTATTACTATTTATACAT
1 TGCTAAACTTATTCTTCCACTATCTACACTCTAATCACTATTTATACAT
32067000 TGCTAAACTTATTCTTCCACTATCTACACTCTAATCACTATTTAT
1 TGCTAAACTTATTCTTCCACTATCTACACTCTAATCACTATTTAT
32067045 CCCTTCTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.03, T:0.44
Consensus pattern (49 bp):
TGCTAAACTTATTCTTCCACTATCTACACTCTAATCACTATTTATACAT
Found at i:32067536 original size:13 final size:13
Alignment explanation
Indices: 32067500--32067528 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32067490 TGGGTCACAA
32067500 GCCCATGTGTGTT
1 GCCCATGTGTGTT
32067513 GCCCATGTGTGTT
1 GCCCATGTGTGTT
32067526 GCC
1 GCC
32067529 TCTGTGTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.28, G:0.31, T:0.34
Consensus pattern (13 bp):
GCCCATGTGTGTT
Found at i:32069580 original size:8 final size:8
Alignment explanation
Indices: 32069561--32069618 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
32069551 TGCGTGATTC
32069561 TTCTTCTTT
1 TTCTT-TTT
32069570 TTCTTTTT
1 TTCTTTTT
*
32069578 TTCTTTCT
1 TTCTTTTT
*
32069586 TTCTTTCT
1 TTCTTTTT
32069594 TTCTTTCTT
1 TTCTTT-TT
* *
32069603 TTAATTTCT
1 TT-CTTTTT
32069612 TTCTTTT
1 TTCTTTT
32069619 GTTTGCACGC
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
8 27 0.66
9 11 0.27
10 3 0.07
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (8 bp):
TTCTTTTT
Found at i:32069586 original size:4 final size:4
Alignment explanation
Indices: 32069569--32069617 Score: 62
Period size: 4 Copynumber: 11.8 Consensus size: 4
32069559 TCTTCTTCTT
* *
32069569 TTTC TTTT TTTC TTTC TTTC TTTC TTTC TTTC TTTTAA TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC TTTC TTT
32069618 TGTTTGCACG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 33 0.85
5 6 0.15
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:32072837 original size:27 final size:25
Alignment explanation
Indices: 32072806--32073110 Score: 158
Period size: 27 Copynumber: 11.4 Consensus size: 25
32072796 TAACAATCAT
32072806 TTTACACTATGAGGGTATTTTGGTCA
1 TTTAC-CTATGAGGGTATTTTGGTCA
32072832 TATTACCCTATG-GGG-ATCTTTCGGTCA
1 T-TTA-CCTATGAGGGTAT-TTT-GGTCA
*
32072859 TTCTATCTTATGAGGGTATTTTGGTCA
1 TT-TA-CCTATGAGGGTATTTTGGTCA
* *
32072886 TTCTATCTTATGAGGGTATTTCGGTCA
1 TT-TA-CCTATGAGGGTATTTTGGTCA
* * * *
32072913 TATTACTCTACGGGGGGTATTTCGATCA
1 T-TTAC-CTA-TGAGGGTATTTTGGTCA
32072941 TTCTAACCTATGAGGGTATTTTGGTCA
1 TT-T-ACCTATGAGGGTATTTTGGTCA
** *
32072968 TTTTACCCTATG-GGGTATTTCAGTTA
1 -TTTA-CCTATGAGGGTATTTTGGTCA
*
32072994 TTCTATCTTATG-GGGTATTTCT-GTCA
1 TT-TA-CCTATGAGGGTATTT-TGGTCA
32073020 TTTTACCTTATCG-GGGTATTTTGGTCA
1 -TTTACC-TAT-GAGGGTATTTTGGTCA
* *
32073047 TTTTACCCTATG-GGTGTATTTCGGTTA
1 -TTTA-CCTATGAGG-GTATTTTGGTCA
* *
32073074 TTTTACCTTAT-AGGGGTATTTCGATCA
1 -TTTACC-TATGA-GGGTATTTTGGTCA
32073101 TTTTACCTAT
1 -TTTACCTAT
32073111 TTTACGGTCT
Statistics
Matches: 231, Mismatches: 23, Indels: 50
0.76 0.08 0.16
Matches are distributed among these distances:
25 5 0.02
26 53 0.23
27 136 0.59
28 33 0.14
29 4 0.02
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45
Consensus pattern (25 bp):
TTTACCTATGAGGGTATTTTGGTCA
Found at i:32072908 original size:54 final size:53
Alignment explanation
Indices: 32072802--32073094 Score: 265
Period size: 54 Copynumber: 5.5 Consensus size: 53
32072792 GCCATAACAA
*
32072802 TCATTTTACAC-TATGAGGGTATTTTGGTCATAT-TACCCTATGGGGATCTTTCGG
1 TCATTTTAC-CTTATGAGGGTATTTTGGTCAT-TCTACCCTATGGGG-TATTTCGG
* * * *
32072856 TCATTCTATCTTATGAGGGTATTTTGGTCATTCTATCTTATGAGGGTATTTCGG
1 TCATTTTACCTTATGAGGGTATTTTGGTCATTCTACCCTATG-GGGTATTTCGG
* * * * * * *
32072910 TCATATTA-CTCTACGGGGGGTATTTCGATCATTCTAACCTATGAGGGTATTTTGG
1 TCATTTTACCT-TA-TGAGGGTATTTTGGTCATTCTACCCTATG-GGGTATTTCGG
* ** * * * *
32072965 TCATTTTACCCTATG-GGGTATTTCAGTTATTCTATCTTATGGGGTATTTCTG
1 TCATTTTACCTTATGAGGGTATTTTGGTCATTCTACCCTATGGGGTATTTCGG
*
32073017 TCATTTTACCTTATCG-GGGTATTTTGGTCATTTTACCCTATGGGTGTATTTCGG
1 TCATTTTACCTTAT-GAGGGTATTTTGGTCATTCTACCCTATGGG-GTATTTCGG
*
32073071 TTATTTTACCTTAT-AGGGGTATTT
1 TCATTTTACCTTATGA-GGGTATTT
32073095 CGATCATTTT
Statistics
Matches: 196, Mismatches: 33, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
52 22 0.11
53 48 0.24
54 79 0.40
55 46 0.23
56 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.45
Consensus pattern (53 bp):
TCATTTTACCTTATGAGGGTATTTTGGTCATTCTACCCTATGGGGTATTTCGG
Found at i:32072942 original size:55 final size:53
Alignment explanation
Indices: 32072872--32073102 Score: 207
Period size: 53 Copynumber: 4.3 Consensus size: 53
32072862 TATCTTATGA
* * * *
32072872 GGGTATTTTGGTCATTCTATCTTATGAGGGTATTTCGGTCATATTACTCTACGGG
1 GGGTATTTCGATCATTCTATCTTATGAGGGTATTTCGGTCATTTTACCCTA--GG
* * * *
32072927 GGGTATTTCGATCATTCTAACCTATGAGGGTATTTTGGTCATTTTACCCTATG
1 GGGTATTTCGATCATTCTATCTTATGAGGGTATTTCGGTCATTTTACCCTAGG
* * * *
32072980 GGGTATTTC-AGTTATTCTATCTTATG-GGGTATTTCTGTCATTTTACCTTATCG
1 GGGTATTTCGA-TCATTCTATCTTATGAGGGTATTTCGGTCATTTTACCCTA-GG
* * * * * * * *
32073033 GGGTATTTTGGTCATTTTACCCTATG-GGTGTATTTCGGTTATTTTACCTTATAG
1 GGGTATTTCGATCATTCTATCTTATGAGG-GTATTTCGGTCATTTTACCCTA-GG
32073087 GGGTATTTCGATCATT
1 GGGTATTTCGATCATT
32073103 TTACCTATTT
Statistics
Matches: 146, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
52 22 0.15
53 44 0.30
54 36 0.25
55 44 0.30
ACGTcount: A:0.18, C:0.15, G:0.22, T:0.45
Consensus pattern (53 bp):
GGGTATTTCGATCATTCTATCTTATGAGGGTATTTCGGTCATTTTACCCTAGG
Found at i:32076197 original size:27 final size:27
Alignment explanation
Indices: 32076120--32076329 Score: 237
Period size: 27 Copynumber: 7.8 Consensus size: 27
32076110 GCAATTATGG
* *
32076120 GGGGTATGTTGGTCATTTTACCCTAT-
1 GGGGTATTTTGATCATTTTACCCTATA
* * * * *
32076146 GGGCTATTTCGGTCATTCTATCCTATA
1 GGGGTATTTTGATCATTTTACCCTATA
*
32076173 GGGGTATTTTGATAATTTTACCCTA-A
1 GGGGTATTTTGATCATTTTACCCTATA
32076199 GGCGGTATTTTGATCATTTTACCCTAT-
1 GG-GGTATTTTGATCATTTTACCCTATA
*
32076226 GAGGGTATTTTGATCATTTTACCCTATG
1 G-GGGTATTTTGATCATTTTACCCTATA
* * *
32076254 GGGGTATTTCGATTATTTTACCCTATG
1 GGGGTATTTTGATCATTTTACCCTATA
* *
32076281 GGGGTATTTCGGTCATTTTACCCTATA
1 GGGGTATTTTGATCATTTTACCCTATA
* *
32076308 AGGGTATTTTGACCATTTTACC
1 GGGGTATTTTGATCATTTTACC
32076330 TATTTTAGGG
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
26 24 0.15
27 132 0.84
28 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGGTATTTTGATCATTTTACCCTATA
Found at i:32076272 original size:81 final size:81
Alignment explanation
Indices: 32076122--32076329 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 81
32076112 AATTATGGGG
* * * * * * *
32076122 GGTATGTTGGTCATTTTACCCTATG-GGCTATTTCGGTCATTCTATCCTATAGGGGTATTTTGAT
1 GGTATTTTGGTCATTTTACCCTATGAGGGTATTTTGATCATTTTACCCTATAGGGGTATTTCGAT
32076186 AATTTTACCCTAAGGC
66 AATTTTACCCTAAGGC
* *
32076202 GGTATTTTGATCATTTTACCCTATGAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGAT
1 GGTATTTTGGTCATTTTACCCTATGAGGGTATTTTGATCATTTTACCCTATAGGGGTATTTCGAT
* * *
32076267 TATTTTACCCTATGGG
66 AATTTTACCCTAAGGC
* * *
32076283 GGTATTTCGGTCATTTTACCCTATAAGGGTATTTTGACCATTTTACC
1 GGTATTTTGGTCATTTTACCCTATGAGGGTATTTTGATCATTTTACC
32076330 TATTTTAGGG
Statistics
Matches: 111, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 23 0.21
81 88 0.79
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTCATTTTACCCTATGAGGGTATTTTGATCATTTTACCCTATAGGGGTATTTCGAT
AATTTTACCCTAAGGC
Found at i:32079723 original size:10 final size:10
Alignment explanation
Indices: 32079708--32079736 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
32079698 TCTAAATCCT
32079708 GACTCAACTC
1 GACTCAACTC
32079718 GACTCAACTC
1 GACTCAACTC
32079728 GACTCAACT
1 GACTCAACT
32079737 ATGGCATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.38, G:0.10, T:0.21
Consensus pattern (10 bp):
GACTCAACTC
Found at i:32080635 original size:17 final size:17
Alignment explanation
Indices: 32080592--32080635 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
32080582 CAATGTGTGT
*
32080592 TGCCCGTGTGTGACACA
1 TGCCCGTGTGCGACACA
* *
32080609 TCCCCATGTGCGACACA
1 TGCCCGTGTGCGACACA
32080626 TGCCCGTGTG
1 TGCCCGTGTG
32080636 GCCAGGCTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (17 bp):
TGCCCGTGTGCGACACA
Found at i:32082321 original size:28 final size:29
Alignment explanation
Indices: 32082239--32082314 Score: 118
Period size: 30 Copynumber: 2.6 Consensus size: 29
32082229 CAATAGTAGT
*
32082239 GTGTGGGCCATAGCCCAATACAGTAACAAA
1 GTGTGGGCCTTAGCCCAATACAGTAAC-AA
*
32082269 ATGTGGGCCTTAGCCCAATACAGTAAC-A
1 GTGTGGGCCTTAGCCCAATACAGTAACAA
32082297 GTGTGGGCCTTAGCCCAA
1 GTGTGGGCCTTAGCCCAA
32082315 AATAGTATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 18 0.42
30 25 0.58
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAA
Found at i:32083707 original size:27 final size:27
Alignment explanation
Indices: 32083667--32084023 Score: 357
Period size: 27 Copynumber: 13.3 Consensus size: 27
32083657 GGCTTGGGCC
32083667 GTAAAATTACTGAAATACCCTCGATGG
1 GTAAAATTACTGAAATACCCTCGATGG
* *
32083694 GTAAAATTATTGAAATACCCTCGATAG
1 GTAAAATTACTGAAATACCCTCGATGG
* * * *
32083721 GTAAAATTACCGAAATATCCACGATAG
1 GTAAAATTACTGAAATACCCTCGATGG
* *
32083748 ATAAAACTACTGAAATACCCTCGATGG
1 GTAAAATTACTGAAATACCCTCGATGG
* * *
32083775 GTAAAATTATTGAAATACCTTCGATAG
1 GTAAAATTACTGAAATACCCTCGATGG
* *
32083802 GTAAAATTACTGAAATACCTTTGAT-G
1 GTAAAATTACTGAAATACCCTCGATGG
** *
32083828 GTAAAATTACCAAAATACCCTCGATAG
1 GTAAAATTACTGAAATACCCTCGATGG
* * *
32083855 GCAAAATTATTGAAATACCCTCAATGG
1 GTAAAATTACTGAAATACCCTCGATGG
32083882 GTAAAATTA-TCGAAATACCCTCGATGG
1 GTAAAATTACT-GAAATACCCTCGATGG
* * * *
32083909 GTAAAATTTCTAAAATACCCCCAATGG
1 GTAAAATTACTGAAATACCCTCGATGG
**
32083936 GTAAAATTAC-GAAAATACCC-CTGAAAG
1 GTAAAATTACTG-AAATACCCTC-GATGG
* * *
32083963 GTAAAA-TAATCAAAATACCCTTGATGG
1 GTAAAATTACT-GAAATACCCTCGATGG
* *
32083990 GTAAAATTACCGAAATA-CCTCTATAGG
1 GTAAAATTACTGAAATACCCTCGAT-GG
32084017 GTAAAAT
1 GTAAAAT
32084024 GACCGTTCTA
Statistics
Matches: 270, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
26 31 0.11
27 236 0.87
28 3 0.01
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCTCGATGG
Found at i:32084160 original size:26 final size:26
Alignment explanation
Indices: 32084131--32084183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32084121 GCATCTCTTT
*
32084131 TGCGTTACTGTTACTGGCAGATTTGC
1 TGCGTTACTATTACTGGCAGATTTGC
* *
32084157 TGCGTTATTATTACTGGCAGCTTTGC
1 TGCGTTACTATTACTGGCAGATTTGC
32084183 T
1 T
32084184 ACGATATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.42
Consensus pattern (26 bp):
TGCGTTACTATTACTGGCAGATTTGC
Found at i:32084191 original size:26 final size:26
Alignment explanation
Indices: 32084141--32084191 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32084131 TGCGTTACTG
* *
32084141 TTACTGGCAGATTTGCTGCGTTATTA
1 TTACTGGCAGATTTGCTACGATATTA
*
32084167 TTACTGGCAGCTTTGCTACGATATT
1 TTACTGGCAGATTTGCTACGATATT
32084192 GGTGTGTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (26 bp):
TTACTGGCAGATTTGCTACGATATTA
Found at i:32086265 original size:34 final size:35
Alignment explanation
Indices: 32086214--32086298 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 35
32086204 GTTTCAAAGG
32086214 TATT-AAAGTGTGGTTG-TTTCACATATTACAATGA
1 TATTCAAA-TGTGGTTGTTTTCACATATTACAATGA
* * * *
32086248 TATTCAAATGTGGTTGTTTTTACATGTTATAATGT
1 TATTCAAATGTGGTTGTTTTCACATATTACAATGA
* *
32086283 TGTCCAAATGTGGTTG
1 TATTCAAATGTGGTTG
32086299 CTTTGCATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
34 12 0.28
35 31 0.72
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (35 bp):
TATTCAAATGTGGTTGTTTTCACATATTACAATGA
Found at i:32086315 original size:34 final size:35
Alignment explanation
Indices: 32086252--32086322 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 35
32086242 CAATGATATT
* *
32086252 CAAATGTGGTTGTTTTTACATGTTATAATGTTGTC
1 CAAATGTGGTTGTCTTTACATGTTATAATGCTGTC
*
32086287 CAAATGTGGTTG-CTTTGCATG-TATTAATGCTGTC
1 CAAATGTGGTTGTCTTTACATGTTA-TAATGCTGTC
32086321 CA
1 CA
32086323 TTTTTTGTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 2 0.06
34 18 0.56
35 12 0.38
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.44
Consensus pattern (35 bp):
CAAATGTGGTTGTCTTTACATGTTATAATGCTGTC
Found at i:32086422 original size:69 final size:69
Alignment explanation
Indices: 32086312--32086440 Score: 170
Period size: 69 Copynumber: 1.9 Consensus size: 69
32086302 TGCATGTATT
* * **
32086312 AATGCTGTCCATTTTTTGTACAAATCTATGATGTCTGAATGTTGT-TAATGCTGTCCAAATTAGT
1 AATGCTGTCCATTTTTGGTACAAATCAATGATGTCCAAATGTT-TCTAATGCTGTCCAAATTAGT
32086376 GCGTA
65 GCGTA
* * * *
32086381 AATGCTGTCCATTTTTGGTACAAGTCAATGCTGTCCAAATGTTTCTACTGTTGTCCAAAT
1 AATGCTGTCCATTTTTGGTACAAATCAATGATGTCCAAATGTTTCTAATGCTGTCCAAAT
32086441 ATTTGTGAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 1 0.02
69 50 0.98
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.40
Consensus pattern (69 bp):
AATGCTGTCCATTTTTGGTACAAATCAATGATGTCCAAATGTTTCTAATGCTGTCCAAATTAGTG
CGTA
Found at i:32091317 original size:6 final size:6
Alignment explanation
Indices: 32091306--32091331 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32091296 AGACTGAACA
32091306 GAAAGT GAAAGT GAAAGT GAAAGT GA
1 GAAAGT GAAAGT GAAAGT GAAAGT GA
32091332 TAGTCTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15
Consensus pattern (6 bp):
GAAAGT
Found at i:32093013 original size:40 final size:40
Alignment explanation
Indices: 32092969--32093100 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
32092959 TGTTTAGCTT
* * *
32092969 TTAGTGTACGATTCGAGATAGCTTCGACTATTTATGGCAC
1 TTAGTGTGCGATTCGAGATAGCTTCGGCTATATATGGCAC
* *
32093009 TTAGTGTGCGATT-GGGAATAGCTTCGGCTATATATGACAC
1 TTAGTGTGCGATTCGAG-ATAGCTTCGGCTATATATGGCAC
** * * *
32093049 TTAGTGTGCGAGACTAAGATAGCTTCGGCTATGTAAGGCAC
1 TTAGTGTGCGATTC-GAGATAGCTTCGGCTATATATGGCAC
32093090 TTAGTGTGCGA
1 TTAGTGTGCGA
32093101 GATTATAATA
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.03
40 43 0.56
41 31 0.40
42 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (40 bp):
TTAGTGTGCGATTCGAGATAGCTTCGGCTATATATGGCAC
Found at i:32093080 original size:41 final size:41
Alignment explanation
Indices: 32092984--32093120 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
32092974 GTACGATTCG
* * *
32092984 AGATAGCTTCGACTATTTATGGCACTTAGTGTGC--GATTG
1 AGATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATTA
* * *
32093023 GGAATAGCTTCGGCTATATATGACACTTAGTGTGCGAGACTA
1 AG-ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATTA
* *
32093065 AGATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGAGATTA
1 AGATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATTA
32093106 TA-ATAGCTTCGGCTA
1 -AGATAGCTTCGGCTA
32093121 AGCGATGGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 29 0.35
41 48 0.58
42 5 0.06
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (41 bp):
AGATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATTA
Found at i:32093863 original size:34 final size:35
Alignment explanation
Indices: 32093803--32093869 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
32093793 TGATATCCAA
* *
32093803 ATGTGGTTGTTTTTACATGTTATAATGTTGTCCGG
1 ATGTGGTTGTCTTTACATGTTATAATGCTGTCCGG
*
32093838 ATGTGGTTG-CTTTGCATG-TATTAATGCTGTCC
1 ATGTGGTTGTCTTTACATGTTA-TAATGCTGTCC
32093870 ATTTTGAGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.07
34 17 0.61
35 9 0.32
ACGTcount: A:0.16, C:0.12, G:0.25, T:0.46
Consensus pattern (35 bp):
ATGTGGTTGTCTTTACATGTTATAATGCTGTCCGG
Found at i:32103091 original size:24 final size:24
Alignment explanation
Indices: 32103058--32103148 Score: 96
Period size: 24 Copynumber: 3.8 Consensus size: 24
32103048 TTGTCACCCC
32103058 CAGCTCGTGAGAGCATACTGATTA
1 CAGCTCGTGAGAGCATACTGATTA
*
32103082 CAGCTTGTGAGAGCATACCT-ATTA
1 CAGCTCGTGAGAGCATA-CTGATTA
* *
32103106 TAGCTCGTGAGAGTATA-TAGATTTA
1 CAGCTCGTGAGAGCATACT-GA-TTA
* *
32103131 CAGCTCGGGTGAGCATAC
1 CAGCTCGTGAGAGCATAC
32103149 ATGTTCAGGA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
22 1 0.02
24 35 0.65
25 18 0.33
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (24 bp):
CAGCTCGTGAGAGCATACTGATTA
Found at i:32104244 original size:15 final size:15
Alignment explanation
Indices: 32104226--32104276 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
32104216 TCTATCGTGT
32104226 GTGACACATGGCCAG
1 GTGACACATGGCCAG
*
32104241 GTG--ACATGGCCGTG
1 GTGACACATGGCC-AG
32104255 TGTGACACATGGCCAG
1 -GTGACACATGGCCAG
32104271 GTGACA
1 GTGACA
32104277 TGGCCGTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 8 0.27
14 1 0.03
15 12 0.40
16 1 0.03
17 8 0.27
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (15 bp):
GTGACACATGGCCAG
Found at i:32104249 original size:13 final size:13
Alignment explanation
Indices: 32104231--32104281 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 13
32104221 CGTGTGTGAC
32104231 ACATGGCCAGGTG
1 ACATGGCCAGGTG
*
32104244 ACATGGCCGTGTGTG
1 ACATGGCC-AG-GTG
32104259 ACACATGGCCAGGTG
1 --ACATGGCCAGGTG
32104274 ACATGGCC
1 ACATGGCC
32104282 GTGTGTCCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 16 0.50
14 1 0.03
15 6 0.19
16 1 0.03
17 8 0.25
ACGTcount: A:0.22, C:0.25, G:0.35, T:0.18
Consensus pattern (13 bp):
ACATGGCCAGGTG
Found at i:32104257 original size:30 final size:30
Alignment explanation
Indices: 32104221--32104287 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
32104211 GTGTCTCTAT
32104221 CGTGTGTGACACATGGCCAGGTGACATGGC
1 CGTGTGTGACACATGGCCAGGTGACATGGC
32104251 CGTGTGTGACACATGGCCAGGTGACATGGC
1 CGTGTGTGACACATGGCCAGGTGACATGGC
32104281 CGTGTGT
1 CGTGTGT
32104288 CCCCTATAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.37, T:0.22
Consensus pattern (30 bp):
CGTGTGTGACACATGGCCAGGTGACATGGC
Found at i:32105723 original size:20 final size:20
Alignment explanation
Indices: 32105674--32105728 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
32105664 CATAATAAAA
*
32105674 GTACCAAAGTACAAACAGGG
1 GTACCAAAGTACAATCAGGG
* ** *
32105694 GCACGTAAGTGCAATCAGGG
1 GTACCAAAGTACAATCAGGG
32105714 GTACCAAAGTACAAT
1 GTACCAAAGTACAAT
32105729 AATTTTCTAT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.15
Consensus pattern (20 bp):
GTACCAAAGTACAATCAGGG
Found at i:32105928 original size:17 final size:16
Alignment explanation
Indices: 32105897--32105930 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32105887 TATCCAAGTT
*
32105897 TTAATCAATATATTAA
1 TTAATCAATAAATTAA
32105913 TTAATACAATAAATTAA
1 TTAAT-CAATAAATTAA
32105930 T
1 T
32105931 CTCATACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATCAATAAATTAA
Found at i:32116134 original size:26 final size:26
Alignment explanation
Indices: 32116105--32116163 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
32116095 AGCAAAGCTG
* *
32116105 CCAGTAATAGTGATGCAACAAAGTTA
1 CCAGTAATAGTAATACAACAAAGTTA
*
32116131 CCAGTAATAGTAATACAACAAAGTTT
1 CCAGTAATAGTAATACAACAAAGTTA
32116157 CCAGTAA
1 CCAGTAA
32116164 CAATATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (26 bp):
CCAGTAATAGTAATACAACAAAGTTA
Found at i:32116365 original size:27 final size:27
Alignment explanation
Indices: 32116334--32116392 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
32116324 CAACTCCTAG
32116334 GGGTATAACAGTCATTGTACCCTATGA
1 GGGTATAACAGTCATTGTACCCTATGA
** * *
32116361 GGGTATTTCAGTCATTTTACCCTTTGA
1 GGGTATAACAGTCATTGTACCCTATGA
32116388 GGGTA
1 GGGTA
32116393 ATTTAGTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (27 bp):
GGGTATAACAGTCATTGTACCCTATGA
Found at i:32116400 original size:27 final size:27
Alignment explanation
Indices: 32116343--32116619 Score: 190
Period size: 27 Copynumber: 10.3 Consensus size: 27
32116333 GGGGTATAAC
*
32116343 AGTCATTGTACCCTAT-GAGGGT-ATTT
1 AGTCATTTTACCCT-TCGAGGGTAATTT
*
32116369 CAGTCATTTTACCCTTTGAGGGTAATTT
1 -AGTCATTTTACCCTTCGAGGGTAATTT
* * * *
32116397 AGTCATTTTACCTTTTGGGGGTAATTC
1 AGTCATTTTACCCTTCGAGGGTAATTT
* * * *
32116424 AATCATTCTACCCTTCGAGTGTAATTC
1 AGTCATTTTACCCTTCGAGGGTAATTT
* * * *
32116451 GGTCACTTTACCCTTCGGGGGTAATTC
1 AGTCATTTTACCCTTCGAGGGTAATTT
* * *
32116478 AGTCACTTTACCCTCCGGGGGTAA-TT
1 AGTCATTTTACCCTTCGAGGGTAATTT
*
32116504 CGATCATTTTACCCTTCG-GGGTAATTT
1 AG-TCATTTTACCCTTCGAGGGTAATTT
* * *
32116531 GGTCATTTTACCGTTC-AGGGATAATTC
1 AGTCATTTTACCCTTCGAGGG-TAATTT
* * * * *
32116558 GGTCATTTT-CGTCTACGGGGGTAATTC
1 AGTCATTTTAC-CCTTCGAGGGTAATTT
* *
32116585 GGTCATTTTACCTTTC-AGGAGTAATTT
1 AGTCATTTTACCCTTCGAGG-GTAATTT
*
32116612 GGTCATTT
1 AGTCATTT
32116620 GCCCGTTATT
Statistics
Matches: 206, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
26 28 0.14
27 170 0.83
28 8 0.04
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTTCGAGGGTAATTT
Found at i:32116419 original size:54 final size:54
Alignment explanation
Indices: 32116344--32116619 Score: 227
Period size: 54 Copynumber: 5.1 Consensus size: 54
32116334 GGGTATAACA
* * * * *
32116344 GTCATTGTACCCTATGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTAATTTA
1 GTCATTTTACCCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGGGTAATTTG
* * * * * *
32116398 GTCATTTTACCTTTTGGGGGTAATTCAATCATTCTACCCTTCGAGTGTAATTCG
1 GTCATTTTACCCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGGGTAATTTG
* * * ** * *
32116452 GTCACTTTACCCTTCGGGGGTAATTCAGTCACTTTACCCTCCGGGGGTAATTCG
1 GTCATTTTACCCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGGGTAATTTG
* * ** * * *
32116506 ATCATTTTACCC-TTCGGGGTAATTTGGTCATTTTA-CCGTTCAGGGATAATTCG
1 GTCATTTTACCCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGGG-TAATTTG
* ** * *
32116559 GTCATTTT-CGTCTACGGGGGTAATTCGGTCATTTTA-CCTTTCAGGAGTAATTTG
1 GTCATTTTAC-CCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGG-GTAATTTG
32116613 GTCATTT
1 GTCATTT
32116620 GCCCGTTATT
Statistics
Matches: 178, Mismatches: 40, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
52 6 0.03
53 33 0.19
54 138 0.78
55 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (54 bp):
GTCATTTTACCCTTTGGGGGTAATTCAGTCATTTTACCCTTTGAGGGTAATTTG
Found at i:32116473 original size:81 final size:81
Alignment explanation
Indices: 32116345--32116619 Score: 261
Period size: 81 Copynumber: 3.4 Consensus size: 81
32116335 GGTATAACAG
* * * * * *
32116345 TCATTGTACCCTAT-GAGGGTATTTCAGTCATTTTACCCTTTGAGGGTAATTTAGTCATTTTACC
1 TCATTCTACCCT-TCGAGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCAGTCATTTTACC
* **
32116409 TTTTGGGGGTAATTCAA
65 CTCCGGGGGTAATTCAA
* * *
32116426 TCATTCTACCCTTCGAGTGTAATTCGGTCACTTTACCCTTCGGGGGTAATTCAGTCACTTTACCC
1 TCATTCTACCCTTCGAGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCAGTCATTTTACCC
*
32116491 TCCGGGGGTAATTCGA
66 TCCGGGGGTAATTCAA
* * * * * * *
32116507 TCATTTTACCCTTCG-GGGTAATTTGGTCATTTTACCGTTCAGGGATAATTCGGTCATTTT-CGT
1 TCATTCTACCCTTCGAGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCAGTCATTTTAC-C
* **
32116570 CTACGGGGGTAATTCGG
65 CTCCGGGGGTAATTCAA
* * *
32116587 TCATTTTACCTTTC-AGGAGTAATTTGGTCATTT
1 TCATTCTACCCTTCGAGG-GTAATTCGGTCATTT
32116620 GCCCGTTATT
Statistics
Matches: 164, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 68 0.41
81 95 0.58
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (81 bp):
TCATTCTACCCTTCGAGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCAGTCATTTTACCC
TCCGGGGGTAATTCAA
Found at i:32118326 original size:26 final size:26
Alignment explanation
Indices: 32118297--32118399 Score: 102
Period size: 26 Copynumber: 4.0 Consensus size: 26
32118287 TCACCAATAT
*
32118297 TGCAGCAAAGCTGCCAGTAATAGTGA
1 TGCAGCAAAGCTGCCAGTAATAGTAA
* *
32118323 TGCAACAAAGCTACCAGTAATAGTAA
1 TGCAGCAAAGCTGCCAGTAATAGTAA
** *
32118349 TATAGCAAAGCTGCCAGTAACAGTATA
1 TGCAGCAAAGCTGCCAGTAATAGTA-A
**
32118376 TGTC-GCAAAGCCACCAGT-ATAGTA
1 TG-CAGCAAAGCTGCCAGTAATAGTA
32118400 TACTTCCCCT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 48 0.77
27 14 0.23
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
TGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:32118398 original size:52 final size:52
Alignment explanation
Indices: 32118300--32118399 Score: 132
Period size: 52 Copynumber: 1.9 Consensus size: 52
32118290 CCAATATTGC
* *
32118300 AGCAAAGCTGCCAGTAATAGTGATGCAACAAAGCTACCAGTAATAGTAATAT
1 AGCAAAGCTGCCAGTAACAGTGATGCAACAAAGCCACCAGTAATAGTAATAT
* *
32118352 AGCAAAGCTGCCAGTAACAGTATATGTC-GCAAAGCCACCAGT-ATAGTA
1 AGCAAAGCTGCCAGTAACAGT-GATG-CAACAAAGCCACCAGTAATAGTA
32118400 TACTTCCCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
52 26 0.62
53 15 0.36
54 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (52 bp):
AGCAAAGCTGCCAGTAACAGTGATGCAACAAAGCCACCAGTAATAGTAATAT
Found at i:32118624 original size:54 final size:54
Alignment explanation
Indices: 32118547--32118663 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
32118537 AAGGGTATCA
*
32118547 CAGTCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTTTGAGGGTAATT
1 CAGTCATTTTACCCTATGAGGGTATTTCAATCATTTTACCCTTTGAGGGTAATT
*
32118601 CAGTCATTTTACCC-ATCGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTAATT
1 CAGTCATTTTACCCTAT-GAGGGTATTTCAATCATTTTACCCTTTGAGGGTAATT
**
32118655 TGGTCATTT
1 CAGTCATTT
32118664 GCCCATGATT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (54 bp):
CAGTCATTTTACCCTATGAGGGTATTTCAATCATTTTACCCTTTGAGGGTAATT
Found at i:32118663 original size:27 final size:27
Alignment explanation
Indices: 32118538--32118651 Score: 156
Period size: 27 Copynumber: 4.2 Consensus size: 27
32118528 TCAACTCCTA
** *
32118538 AGGGTATCACAGTCATTTTACCCTATG
1 AGGGTATTTCAGTCATTTTACCCTTTG
* *
32118565 GGGGTATTTCAATCATTTTACCCTTTG
1 AGGGTATTTCAGTCATTTTACCCTTTG
* * *
32118592 AGGGTAATTCAGTCATTTTACCCATCG
1 AGGGTATTTCAGTCATTTTACCCTTTG
32118619 AGGGTATTTCAGTCATTTTACCCTTTG
1 AGGGTATTTCAGTCATTTTACCCTTTG
32118646 AGGGTA
1 AGGGTA
32118652 ATTTGGTCAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTCATTTTACCCTTTG
Found at i:32120291 original size:28 final size:28
Alignment explanation
Indices: 32120252--32120312 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
32120242 TATACAGTAT
*
32120252 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
32120279 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
32120307 CAGTAA
1 CAGTAA
32120313 TCAATACAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:32120936 original size:27 final size:27
Alignment explanation
Indices: 32120673--32120950 Score: 335
Period size: 27 Copynumber: 10.3 Consensus size: 27
32120663 AGGTGTATAA
* * * *
32120673 CAGTCATTTTACCGTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTAATT
* * *
32120700 TAGTCATTTTACCCTTCGAGGGTCATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
32120727 CAGTCATTTTACCCTTCGGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
* *
32120754 CAGTAATTTTACCTTTCGGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
** *
32120781 TTGTCATTTTACCCTTCGAGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
*
32120808 CAGTCACTTTACCCTTCGGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
*
32120835 CGGTCATTTTACCCTTC-GGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
* * * *
32120861 CGGTCACTTTACCTTTAGGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
*
32120888 CAGTCACTTTACCCTTCGGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
** *
32120915 TGGTCATTTTACCCTTCTGGGGTAATT
1 CAGTCATTTTACCCTTCGGGGGTAATT
32120942 CTA-TCATTT
1 C-AGTCATTT
32120951 GCCCATGATT
Statistics
Matches: 216, Mismatches: 33, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.11
27 193 0.89
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGGGGGTAATT
Found at i:32123182 original size:50 final size:50
Alignment explanation
Indices: 32123095--32123336 Score: 378
Period size: 50 Copynumber: 4.8 Consensus size: 50
32123085 GATAATAACA
* * ** * *
32123095 TGCCAAAGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATTTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
32123145 TGTCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32123195 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
32123245 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32123295 TGCCAATGCCATGTCCCAGGA-ATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCA-GACATGGTCTTACATGGGACCTCT
32123337 TTACCCAAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
50 176 0.99
51 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32124193 original size:222 final size:222
Alignment explanation
Indices: 32123807--32124250 Score: 888
Period size: 222 Copynumber: 2.0 Consensus size: 222
32123797 AGCTTGGAAG
32123807 TTTGAAAAGCCTAACTATGGCTTCTCCCCTTGCTAAATTCGGCCTAATGAAGAAGATGATAAAAA
1 TTTGAAAAGCCTAACTATGGCTTCTCCCCTTGCTAAATTCGGCCTAATGAAGAAGATGATAAAAA
32123872 ATTGGCTTTTAATTTTGTTTTTTAATTAATTTTAATAACTAAATGACTAAAATGCCCTTAATGAA
66 ATTGGCTTTTAATTTTGTTTTTTAATTAATTTTAATAACTAAATGACTAAAATGCCCTTAATGAA
32123937 AAACTTGGGAAACATGCCTAACCATGTCCATTTTTGTCCACCAACTTAACCAATGGTCTAATTAC
131 AAACTTGGGAAACATGCCTAACCATGTCCATTTTTGTCCACCAACTTAACCAATGGTCTAATTAC
32124002 CATATAAAGAACTCCAATTTAAAATTT
196 CATATAAAGAACTCCAATTTAAAATTT
32124029 TTTGAAAAGCCTAACTATGGCTTCTCCCCTTGCTAAATTCGGCCTAATGAAGAAGATGATAAAAA
1 TTTGAAAAGCCTAACTATGGCTTCTCCCCTTGCTAAATTCGGCCTAATGAAGAAGATGATAAAAA
32124094 ATTGGCTTTTAATTTTGTTTTTTAATTAATTTTAATAACTAAATGACTAAAATGCCCTTAATGAA
66 ATTGGCTTTTAATTTTGTTTTTTAATTAATTTTAATAACTAAATGACTAAAATGCCCTTAATGAA
32124159 AAACTTGGGAAACATGCCTAACCATGTCCATTTTTGTCCACCAACTTAACCAATGGTCTAATTAC
131 AAACTTGGGAAACATGCCTAACCATGTCCATTTTTGTCCACCAACTTAACCAATGGTCTAATTAC
32124224 CATATAAAGAACTCCAATTTAAAATTT
196 CATATAAAGAACTCCAATTTAAAATTT
32124251 CATAACAATT
Statistics
Matches: 222, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 222 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (222 bp):
TTTGAAAAGCCTAACTATGGCTTCTCCCCTTGCTAAATTCGGCCTAATGAAGAAGATGATAAAAA
ATTGGCTTTTAATTTTGTTTTTTAATTAATTTTAATAACTAAATGACTAAAATGCCCTTAATGAA
AAACTTGGGAAACATGCCTAACCATGTCCATTTTTGTCCACCAACTTAACCAATGGTCTAATTAC
CATATAAAGAACTCCAATTTAAAATTT
Found at i:32130406 original size:21 final size:21
Alignment explanation
Indices: 32130380--32130419 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32130370 AACAGTCCAA
32130380 CAAAATCAAAATAGAAAAAAC
1 CAAAATCAAAATAGAAAAAAC
* *
32130401 CAAAATTAATATAGAAAAA
1 CAAAATCAAAATAGAAAAA
32130420 TTATAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (21 bp):
CAAAATCAAAATAGAAAAAAC
Found at i:32144795 original size:22 final size:23
Alignment explanation
Indices: 32144762--32144820 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
32144752 AGAATGATAC
*
32144762 ATGA-AAACTTAAAATAAT-TAT
1 ATGATAAATTTAAAATAATATAT
32144783 ATGATAAATTTAAAATAATAATAT
1 ATGATAAATTTAAAATAAT-ATAT
*
32144807 GTGATAAATTTAAA
1 ATGATAAATTTAAA
32144821 CAACATTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 13 0.39
24 16 0.48
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.36
Consensus pattern (23 bp):
ATGATAAATTTAAAATAATATAT
Found at i:32147728 original size:23 final size:25
Alignment explanation
Indices: 32147676--32147734 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 25
32147666 CAAATAAAAA
32147676 AATAATAATACAACATAACGTTTAG
1 AATAATAATACAACATAACGTTTAG
* * *
32147701 -GTAATAATACTA-ATAA-TTTTAG
1 AATAATAATACAACATAACGTTTAG
32147723 AATAATAATACA
1 AATAATAATACA
32147735 CAATAACTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
22 5 0.18
23 13 0.46
24 10 0.36
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (25 bp):
AATAATAATACAACATAACGTTTAG
Found at i:32149593 original size:44 final size:45
Alignment explanation
Indices: 32149514--32149844 Score: 148
Period size: 44 Copynumber: 7.6 Consensus size: 45
32149504 TAATCCGCTT
* * * * ** *
32149514 CACTACAACTTCAGGGAGATAGGA-TTATCGACTTCAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
* *
32149558 CACTGCAA-TCTCAAGGAGATAAGATTTG-CTTCTTCAGTCTGCCC
1 CACTGCAACT-TCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
** * *
32149602 CACTGTGACTTCAGGGGGATAAGACTTGTCTTC-TCAGTCTGCTC
1 CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
* * * * * * **
32149646 CACTGCAACTTCAGGGATATAAGACCTG-ATGC--GA-TCCACTC
1 CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
** * * * * *
32149687 TGCTGCAACTTC-AGAGAGATAAGA-TCTAT-TACTTTAATCCGCTC
1 CACTGCAACTTCAAG-GAGATAAGACT-TGTCTTCTTCAGTCTGCTC
* * * ** *
32149731 CACTACAACTTCAAGGAGATAGGA-TTATCGGCTTCAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
** * * * * *
32149775 CACTATAACTTCAGGGAAATAAGATTTGTCATCTTC-GATCTGCCC
1 CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAG-TCTGCTC
* *
32149820 CACTGCAACTTCAGGGGGATAAGAC
1 CACTGCAACTTCAAGGAGATAAGAC
32149845 CTGTTGCGAT
Statistics
Matches: 218, Mismatches: 55, Indels: 27
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 26 0.12
42 1 0.00
43 7 0.03
44 140 0.64
45 43 0.20
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (45 bp):
CACTGCAACTTCAAGGAGATAAGACTTGTCTTCTTCAGTCTGCTC
Found at i:32149915 original size:217 final size:217
Alignment explanation
Indices: 32149477--32149884 Score: 520
Period size: 217 Copynumber: 1.9 Consensus size: 217
32149467 CTCTACTGCT
* * * *
32149477 ACTTTAGAGAGATTAGATCGATTACTTTAATCCGCTTCACTACAACTTCAGGGAGATAGGATTAT
1 ACTTCAGAGAGATAAGATCGATTACTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTAT
* * *
32149542 CGACTTCAATCTGCTCCACTGCAATCTCAAGGAGATAAGATTTGCTTCTTCAGTCTGCCCCACTG
66 CGACTTCAATCTGCTCCACTACAATCTCAAGGAAATAAGATTTGCATCTTCAGTCTGCCCCACTG
** * * ** * *
32149607 TGACTTCAGGGGGATAAGACTTGTCTTCTCAGTCTGCTCCACTGCAACTTCAGGGATATAAGACC
131 CAACTTCAGGGGGATAAGACCTGTCTGCTCAGTCCACTCCACTGCAACTTCAGAGAGATAAGACC
* * ** *
32149672 TGATGCGATCCACTCTGCTGCA
196 TGATACAATCCACTCCACTACA
*
32149694 ACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTAT
1 ACTTCAGAGAGATAAGATCGATTACTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTAT
* * *
32149759 CGGCTTCAATCTGCTCCACTATAA-CTTCAGGGAAATAAGATTTGTCATCTTC-GATCTGCCCCA
66 CGACTTCAATCTGCTCCACTACAATC-TCAAGGAAATAAGATTTG-CATCTTCAG-TCTGCCCCA
* *
32149822 CTGCAACTTCAGGGGGATAAGACCTGT-TGC-GA-TCCACTCTACTGCAACTTCAGAGAGATAAG
128 CTGCAACTTCAGGGGGATAAGACCTGTCTGCTCAGTCCACTCCACTGCAACTTCAGAGAGATAAG
32149884 A
193 A
32149885 TCTATTACTT
Statistics
Matches: 167, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
215 26 0.16
216 2 0.01
217 100 0.60
218 39 0.23
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (217 bp):
ACTTCAGAGAGATAAGATCGATTACTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTAT
CGACTTCAATCTGCTCCACTACAATCTCAAGGAAATAAGATTTGCATCTTCAGTCTGCCCCACTG
CAACTTCAGGGGGATAAGACCTGTCTGCTCAGTCCACTCCACTGCAACTTCAGAGAGATAAGACC
TGATACAATCCACTCCACTACA
Found at i:32149942 original size:173 final size:173
Alignment explanation
Indices: 32149519--32149943 Score: 536
Period size: 173 Copynumber: 2.5 Consensus size: 173
32149509 CGCTTCACTA
* * * * * * *
32149519 CAACTTCAGGGAGATAGGAT-TATCGACTTCAATCTGCTCCACTGCAA-TCTCAAGGAGATAAGA
1 CAACTTCAGAGAGATAAGATCTAT-TACTTTAATCAGCTCCACTACAACT-TCAAGGAGATAGGA
** * * * ** * *
32149582 TT-TGCTTCTTCAGTCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTCTTCTCAGTCTGCTC
64 TTAT-CGACTTCAATCTGCCCCACTATAACTTCAGGGAAATAAGACTTGTCATCTCAGTCTGCCC
* *
32149646 CACTGCAACTTCAGGGATATAAGACCTGATGCGATCCACTCTGCTG
128 CACTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTG
*
32149692 CAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTATTACTTTAATCAGCTCCACTACAACTTCAAGGAGATAGGATT
* * *
32149757 ATCGGCTTCAATCTGCTCCACTATAACTTCAGGGAAATAAGATTTGTCATCTTC-GATCTGCCCC
66 ATCGACTTCAATCTGCCCCACTATAACTTCAGGGAAATAAGACTTGTCATC-TCAG-TCTGCCCC
* *
32149821 ACTGCAACTTCAGGGGGATAAGACCTGTTGCGATCCACTCTACTG
129 ACTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTG
**
32149866 CAACTTCAGAGAGATAAGATCTATTACTTTAATCAG-TCCACTACAACTTCTGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTATTACTTTAATCAGCTCCACTACAACTTCAAGGAGATAGGATT
32149930 ATCGACTTCAATCT
66 ATCGACTTCAATCT
32149944 ACTTCCTTAC
Statistics
Matches: 221, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
173 131 0.59
174 90 0.41
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (173 bp):
CAACTTCAGAGAGATAAGATCTATTACTTTAATCAGCTCCACTACAACTTCAAGGAGATAGGATT
ATCGACTTCAATCTGCCCCACTATAACTTCAGGGAAATAAGACTTGTCATCTCAGTCTGCCCCAC
TGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTG
Found at i:32150397 original size:128 final size:128
Alignment explanation
Indices: 32149939--32150366 Score: 707
Period size: 128 Copynumber: 3.3 Consensus size: 128
32149929 TATCGACTTC
32149939 AATCTACTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTACTTAGGG
1 AATCTACTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTACTTAGGG
** * *
32150004 AGACAAGATCTGCAATTTCTGACCTATTCCACTGGTGGCCAGGGACATAGGACTTGTGGCTTA
66 AGACAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTA
*
32150067 AATCTGCTTCCTTACACTTGAAGATAAGATTCG-CTGTCTTCGATCTGCTCCGCTACTACTTAGG
1 AATCTACTTCCTTACACTTGAAGATAAGATTCGTC-GTCTTCGATCTGCTCCGCTACTACTTAGG
* * *
32150131 GAGACAAGATCTGCAATTTCCAACTTATTCCATTGCTGGTCAGGGACATAGGACTTGTAGCTTA
65 GAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTA
* * * *
32150195 AATCTACTTTCTTACACTTGAAGATAAGATTCGTCGTCTTCAATCTGCTCTGCTACTGCTTAGGG
1 AATCTACTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTACTTAGGG
32150260 AGACAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTA
66 AGACAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTA
*
32150323 AATCTGCTTCCTTACACTTGAAGATAAGATTCG-CTGTCTTCGAT
1 AATCTACTTCCTTACACTTGAAGATAAGATTCGTC-GTCTTCGAT
32150367 TTGTTTCCCT
Statistics
Matches: 278, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
127 2 0.01
128 275 0.99
129 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (128 bp):
AATCTACTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTACTTAGGG
AGACAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTA
Found at i:32151539 original size:41 final size:41
Alignment explanation
Indices: 32151482--32151693 Score: 298
Period size: 41 Copynumber: 5.2 Consensus size: 41
32151472 GTTTTCGAGG
* * *
32151482 CTTTAGCGACGTTTTTGAAGAAGCGCTGCTAATTCTCGGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
* * * * * *
32151523 CTTTAACGACGCTTTTGAATAACCGCCGCTAATGCACGGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
*
32151564 CTTTAGCGGCGTTTTTGAAGAAGTGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
*
32151605 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGATCGGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
* * *
32151646 CTTTAGCGGCGTTTTTTAAGAAGCGCCGCTAATTCTCAGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
32151687 CTTTAGC
1 CTTTAGC
32151694 ATTCTTAAAA
Statistics
Matches: 151, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 151 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGT
Found at i:32155755 original size:28 final size:27
Alignment explanation
Indices: 32155715--32155770 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 27
32155705 ACTGGCTTTT
32155715 TTATGGATCTAATTGTCAGACAATTGGG
1 TTATGGATCTAATTGTCAGAC-ATTGGG
32155743 TTATGGATCTAATTGTCAGACATTGGG
1 TTATGGATCTAATTGTCAGACATTGGG
32155770 T
1 T
32155771 GCAGGGTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 7 0.25
28 21 0.75
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (27 bp):
TTATGGATCTAATTGTCAGACATTGGG
Found at i:32156525 original size:43 final size:43
Alignment explanation
Indices: 32156330--32156517 Score: 277
Period size: 43 Copynumber: 4.4 Consensus size: 43
32156320 GCGTCGCTAA
* *
32156330 CTTTAGCGGCGCTTTTTCCACAAACGCCGTTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
32156373 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
* * *
32156416 CTTTAGCGGCGCTTTTACCACAGACGCCGCTAAAAACCATGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
* * * *
32156459 CTTTAGTGGCGCTTTTACCACAAACACCGCTAAAGACCATGGC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
* *
32156502 TTTTAACGGCGCTTTT
1 CTTTAGCGGCGCTTTT
32156518 CAAACAAATG
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 132 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
Found at i:32158966 original size:9 final size:9
Alignment explanation
Indices: 32158952--32158977 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32158942 CAGCAATGGT
32158952 TGTAACCTC
1 TGTAACCTC
32158961 TGTAACCTC
1 TGTAACCTC
32158970 TGTAACCT
1 TGTAACCT
32158978 GTTTGTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.35
Consensus pattern (9 bp):
TGTAACCTC
Found at i:32160286 original size:41 final size:41
Alignment explanation
Indices: 32160210--32160483 Score: 376
Period size: 41 Copynumber: 6.7 Consensus size: 41
32160200 AATATTTTTT
* * **
32160210 GCGGCGCTTTTTAAAAAACGCCGCTAAA-AATAGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCATTA
* *
32160250 GCAGCGCTT-TATCAAAAACGCCGCTCAAGACCAGAGCATTA
1 GCGGCGCTTCT-TCAAAAACGCCGCTAAAGACCAGAGCATTA
*
32160291 GCGGCGCTTCTT-AAGAAACGCCGCTAAAGACCAGAGCACTA
1 GCGGCGCTTCTTCAA-AAACGCCGCTAAAGACCAGAGCATTA
* *
32160332 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCATTA
* *
32160373 GCGGCGCTTCTCCAAAAACGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCATTA
* *
32160414 GCGGCGCTTCTTCAAAAACACCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCATTA
32160455 GCGGCGCTT-TTCGAAAAACGCCGCTAAAG
1 GCGGCGCTTCTTC-AAAAACGCCGCTAAAG
32160484 CCCTGAAAAA
Statistics
Matches: 213, Mismatches: 15, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.00
40 28 0.13
41 181 0.85
42 3 0.01
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (41 bp):
GCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCATTA
Found at i:32160646 original size:40 final size:41
Alignment explanation
Indices: 32160540--32160656 Score: 123
Period size: 40 Copynumber: 2.9 Consensus size: 41
32160530 GCGCTTTTTG
*
32160540 AAAAACGCCACTAATG-TTCATTTTTAGCGGCG-TTTTCCA
1 AAAAACGCCACTAATGCTTGATTTTTAGCGGCGTTTTTCCA
* * * *
32160579 AAAAACGCCACTAGTACTGGATCTTTAGCGGCGTTTTTCC-
1 AAAAACGCCACTAATGCTTGATTTTTAGCGGCGTTTTTCCA
* * * * *
32160619 TAAAGCGCCGCTAATGCTTGATTTTTAGTGGCATTTTT
1 AAAAACGCCACTAATGCTTGATTTTTAGCGGCGTTTTT
32160657 TGTTCAAACG
Statistics
Matches: 62, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 14 0.23
40 42 0.68
41 6 0.10
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (41 bp):
AAAAACGCCACTAATGCTTGATTTTTAGCGGCGTTTTTCCA
Found at i:32160888 original size:18 final size:18
Alignment explanation
Indices: 32160865--32160924 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
32160855 ATGTAATTCT
32160865 AATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
* * **
32160883 AATGTAA-AC-AATTTTCT
1 AATGTAATTCTAA-TATAG
*
32160900 TATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
32160918 AATGTAA
1 AATGTAA
32160925 CTTGTTTTAA
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 2 0.07
17 9 0.31
18 16 0.55
19 2 0.07
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (18 bp):
AATGTAATTCTAATATAG
Found at i:32161661 original size:7 final size:7
Alignment explanation
Indices: 32161651--32161684 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
32161641 TCCATTTTAC
32161651 TTTTTCA
1 TTTTTCA
32161658 -TTTTCA
1 TTTTTCA
32161664 TTTTTCA
1 TTTTTCA
32161671 TTTTTCA
1 TTTTTCA
32161678 TTTTTCA
1 TTTTTCA
32161685 CCCCTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:32162594 original size:14 final size:15
Alignment explanation
Indices: 32162570--32162598 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32162560 TTATCTAGAT
32162570 TTTCTTTTTTCTTTC
1 TTTCTTTTTTCTTTC
32162585 TTTC-TTTTTCTTTC
1 TTTCTTTTTTCTTTC
32162599 ATTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTTCTTTC
Found at i:32175416 original size:25 final size:25
Alignment explanation
Indices: 32175354--32175445 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
32175344 TTCGACCCAT
* * *
32175354 AGCTCGTGTGAGCAAACCGATCTAC
1 AGCTCGAGTGAGCATACTGATCTAC
* *
32175379 AGCTC-ATGAGAGCATACTGATCTAT
1 AGCTCGA-GTGAGCATACTGATCTAC
32175404 AGCTCGAGTGAGCATACTGAT-TCAC
1 AGCTCGAGTGAGCATACTGATCT-AC
32175429 AGCTCGTA-TGAGCATAC
1 AGCTCG-AGTGAGCATAC
32175446 ATGTACAGGA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
24 1 0.02
25 53 0.95
26 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AGCTCGAGTGAGCATACTGATCTAC
Found at i:32179033 original size:20 final size:20
Alignment explanation
Indices: 32178995--32179033 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32178985 TTGGCTTGTG
**
32178995 TTATGGTATCTTGGTTGTTA
1 TTATGGTATCTTGAATGTTA
*
32179015 TTATGGTATTTTGAATGTT
1 TTATGGTATCTTGAATGTT
32179034 GACAATGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.23, T:0.56
Consensus pattern (20 bp):
TTATGGTATCTTGAATGTTA
Found at i:32180160 original size:19 final size:19
Alignment explanation
Indices: 32180133--32180170 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32180123 ACATATCAAT
32180133 CATAAATAAAAAAATATCA
1 CATAAATAAAAAAATATCA
* *
32180152 CATAGATAACAAAATATCA
1 CATAAATAAAAAAATATCA
32180171 ATCTCAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.21
Consensus pattern (19 bp):
CATAAATAAAAAAATATCA
Found at i:32180381 original size:22 final size:22
Alignment explanation
Indices: 32180356--32180398 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32180346 AAGCCACCAC
32180356 TGATATACAGATATACTGCCAT
1 TGATATACAGATATACTGCCAT
* *
32180378 TGATTTGCAGATATACTGCCA
1 TGATATACAGATATACTGCCA
32180399 CTACTTTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
TGATATACAGATATACTGCCAT
Found at i:32185038 original size:11 final size:11
Alignment explanation
Indices: 32185013--32185054 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
32185003 TAACATGTTG
32185013 AATTTTA-ATT
1 AATTTTATATT
*
32185023 AATTTTATAAT
1 AATTTTATATT
*
32185034 AATTTTTTATT
1 AATTTTATATT
32185045 AATTTT-TATT
1 AATTTTATATT
32185055 TTTTTTCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 11 0.39
11 17 0.61
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
AATTTTATATT
Found at i:32192164 original size:27 final size:27
Alignment explanation
Indices: 32192132--32192779 Score: 709
Period size: 27 Copynumber: 24.1 Consensus size: 27
32192122 TTTGGACCTA
* * *
32192132 AATACCCCCGAAGGGTAAAATGACCGA
1 AATACCCCTGTAGGGTAAAATGACCGT
* * * *
32192159 AATA-CCTTG-ATGGATAAAATGATCGA
1 AATACCCCTGTA-GGGTAAAATGACCGT
**
32192185 AATA-CCCTCG-ATGGGTAAAATGACCAA
1 AATACCCCT-GTA-GGGTAAAATGACCGT
* * *
32192212 AAT-GCCCTCGATA-GGTAAAATGACTGA
1 AATACCCCT-G-TAGGGTAAAATGACCGT
* * **
32192239 AATGCCCCTATAGGGTAAAATGACCAA
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
32192266 AATACCCCTATAGGGTAGAAT-ACCGA
1 AATACCCCTGTAGGGTAAAATGACCGT
** *
32192292 AATACCCCCATAGGGTAAAATAACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
32192319 AATACCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
32192346 AATACCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
32192373 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
32192400 AATACCCTTGTAGGGTAAAATAACTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
**
32192427 AATACCCCTGTAGGGTAAAATGATTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
32192454 AATGCCCCTGAAAGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192481 AATGCCCCTGTAGGGTAACATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192508 AATACCCCTCTAGGATAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192535 AATGCCCCTGTAGGGTAAAATGACCAT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
32192562 AATACCCCTGTAGGGTAAAATAACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192589 AATGCCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
32192616 AATGCCCCTATAGGATAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * * **
32192643 AATGCCCTTATAGGGTAAAATGATAGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192670 AATACCCTTGTAGGGTAAAATGACCCT
1 AATACCCCTGTAGGGTAAAATGACCGT
**
32192697 AATACGTCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
32192724 AATA-CCCTGTAGGGTAAAATTACCAT
1 AATACCCCTGTAGGGTAAAATGACCGT
32192750 AATACCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
32192777 AAT
1 AAT
32192780 GCCCTGGTGT
Statistics
Matches: 539, Mismatches: 73, Indels: 18
0.86 0.12 0.03
Matches are distributed among these distances:
25 1 0.00
26 70 0.13
27 463 0.86
28 4 0.01
29 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:32192877 original size:24 final size:24
Alignment explanation
Indices: 32192850--32192901 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
32192840 TTAAATGATA
*
32192850 GATTTGTCTGTG-TTTAGTATGACT
1 GATTTGTCTGTGATTT-GAATGACT
32192874 GATTTGTCTGTGATTTGAATGACT
1 GATTTGTCTGTGATTTGAATGACT
32192898 GATT
1 GATT
32192902 CTGAACATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.48
Consensus pattern (24 bp):
GATTTGTCTGTGATTTGAATGACT
Found at i:32193082 original size:26 final size:26
Alignment explanation
Indices: 32193027--32193082 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
32193017 ACACTATTAC
** *
32193027 TGGCAGCTTTGCTGCAATACTGTTGT
1 TGGCAGCTTTGCTGCAATACTACTGA
* *
32193053 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAGCTTTGCTGCAATACTACTGA
32193079 TGGC
1 TGGC
32193083 TTTGTGCCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.14, C:0.21, G:0.30, T:0.34
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCAATACTACTGA
Found at i:32193114 original size:32 final size:32
Alignment explanation
Indices: 32193073--32193304 Score: 195
Period size: 32 Copynumber: 7.3 Consensus size: 32
32193063 GCTGCGATGC
* *
32193073 TACTGATGGCTTTGTGCCAATCATAGT-ACCAT
1 TACTGATGGCTTTGTGCCGATCATA-TCACTAT
* * * *
32193105 TACTGATGGCTTTGTGTCGATTATATTACTGT
1 TACTGATGGCTTTGTGCCGATCATATCACTAT
* * *
32193137 TACCGATGG-TTATGTGTCGATCATTTCACTAT
1 TACTGATGGCTT-TGTGCCGATCATATCACTAT
* **
32193169 TACTGATGG-TTGTGTGTCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATCACTAT
* * *
32193201 TACTGATGGCTTTGTGCCGATCATGTTACCAT
1 TACTGATGGCTTTGTGCCGATCATATCACTAT
* **
32193233 TATTGATGG-TTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATCACTAT
* * *
32193265 TACTGATGGCTTTGTGCCAATCACATTACTA-
1 TACTGATGGCTTTGTGCCGATCATATCACTAT
*
32193296 TACTTATGG
1 TACTGATGG
32193305 GTTGTAGCCA
Statistics
Matches: 162, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
31 13 0.08
32 145 0.90
33 4 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATCACTAT
Found at i:32193309 original size:64 final size:64
Alignment explanation
Indices: 32193070--32193293 Score: 283
Period size: 64 Copynumber: 3.5 Consensus size: 64
32193060 TTTGCTGCGA
* * *
32193070 TGCTACTGATGGCTTTGTGCCAATCATAGTACCATTACTGATGGCTT-TGTGTCGATTATATTAC
1 TGCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGG-TTGTGTGTCGATCATATCAC
* * * * *
32193134 TGTTACCGATGG-TTATGTGTCGATCAT-TTCACTATTACTGATGGTTGTGTGTCGATCATATCA
1 TGCTACTGATGGCTT-TGTGCCAATCATATT-ACCATTACTGATGGTTGTGTGTCGATCATATCA
32193197 C
64 C
* * * *
32193198 TGCTACTGATGGCTTTGTGCCGATCATGTTACCATTATTGATGGTTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGGTTGTGTGTCGATCATATCAC
*
32193262 TGCTACTGATGGCTTTGTGCCAATCACATTAC
1 TGCTACTGATGGCTTTGTGCCAATCATATTAC
32193294 TATACTTATG
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
63 5 0.04
64 129 0.93
65 4 0.03
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (64 bp):
TGCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGGTTGTGTGTCGATCATATCAC
Found at i:32194514 original size:44 final size:41
Alignment explanation
Indices: 32194367--32194533 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 41
32194357 AAAACTCGTA
* * * * *
32194367 CGATGCCAATGTCCCAGACGTGCTCTTACA-TATAGTCAACTAT
1 CGATGCCAACGTCCCAGACATGGTCTTACACGA-AATCAA--AT
* * *
32194410 CGATGCC-ACTGTCCCAAACAGGGTCTTACACGAAATCATAT
1 CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAAT
* *
32194451 ACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCTCAAAT
1 -CGATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAAAT
* * * *
32194496 CGATGCCAACATCCCAGACGTGGTCTTGCGCGAAATCA
1 CGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
32194534 CATATCGGAG
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 5 0.05
42 27 0.28
43 34 0.35
44 27 0.28
45 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (41 bp):
CGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAAT
Found at i:32194933 original size:102 final size:102
Alignment explanation
Indices: 32194757--32194960 Score: 399
Period size: 102 Copynumber: 2.0 Consensus size: 102
32194747 TACCTCGTAC
*
32194757 GGAGACGAACGAACCGGAACGACTAATCGACAACTTTTGATTTCCCCCGATCCAAATCTGATTTC
1 GGAGACAAACGAACCGGAACGACTAATCGACAACTTTTGATTTCCCCCGATCCAAATCTGATTTC
32194822 CTCTTTTCTTGATCTAATTTAATACCAATTTAACTTA
66 CTCTTTTCTTGATCTAATTTAATACCAATTTAACTTA
32194859 GGAGACAAACGAACCGGAACGACTAATCGACAACTTTTGATTTCCCCCGATCCAAATCTGATTTC
1 GGAGACAAACGAACCGGAACGACTAATCGACAACTTTTGATTTCCCCCGATCCAAATCTGATTTC
32194924 CTCTTTTCTTGATCTAATTTAATACCAATTTAACTTA
66 CTCTTTTCTTGATCTAATTTAATACCAATTTAACTTA
32194961 TTTAATCACA
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (102 bp):
GGAGACAAACGAACCGGAACGACTAATCGACAACTTTTGATTTCCCCCGATCCAAATCTGATTTC
CTCTTTTCTTGATCTAATTTAATACCAATTTAACTTA
Found at i:32210896 original size:40 final size:39
Alignment explanation
Indices: 32210807--32210969 Score: 147
Period size: 39 Copynumber: 4.1 Consensus size: 39
32210797 TTGAATGATG
* *
32210807 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTATA
*
32210846 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTATA
* *
32210885 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
* * **
32210925 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATA-CTATA
32210965 TCCGG
1 TCCGG
32210970 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
39 54 0.52
40 41 0.39
41 8 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
Found at i:32210902 original size:39 final size:41
Alignment explanation
Indices: 32210807--32210950 Score: 160
Period size: 39 Copynumber: 3.6 Consensus size: 41
32210797 TTGAATGATG
*
32210807 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
32210846 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
32210886 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
32210925 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32210951 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
38 2 0.02
39 50 0.55
40 27 0.30
41 11 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:32210969 original size:79 final size:79
Alignment explanation
Indices: 32210807--32210956 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 79
32210797 TTGAATGATG
*
32210807 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
**
32210872 TGCGAGATACTAAT
66 AACGAGATACTAAT
* * * * *
32210886 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAACCGGACTAAGAT-CCGAAGGCAT
32210948 TTGAACGAG
63 TTGAACGAG
32210957 TAGCTATATC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 10 0.17
79 44 0.73
80 6 0.10
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGATACTAAT
Found at i:32215858 original size:24 final size:24
Alignment explanation
Indices: 32215809--32215859 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
32215799 CAACCCATAA
* * *
32215809 TTATTTTTTATTTTTCTTTTCTTT
1 TTATATTTTATTTTTCTCTACTTT
32215833 TTATATTTTATTTTTTCTCTACTTT
1 TTATATTTTA-TTTTTCTCTACTTT
32215858 TT
1 TT
32215860 CAACCACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (24 bp):
TTATATTTTATTTTTCTCTACTTT
Found at i:32226336 original size:50 final size:54
Alignment explanation
Indices: 32226236--32226352 Score: 134
Period size: 56 Copynumber: 2.2 Consensus size: 54
32226226 AGATCCCATC
* *
32226236 TAAGACCATGTCTGGGACATGACATTGGCATCATTGAGGTTATGAGAGGTCCTATA
1 TAAGACCATGTCTGGGACATGACATTGGCATCA-CGAGG-TATGAGAGGTCCTACA
* * * *
32226292 TAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGA-G-ATGAGAGGTCCTCCG
1 TAAGACCATGTCTGGGACATGACATTGGCATCACGAGGTATGAGAGGTCCTACA
32226342 TAAGACCATGT
1 TAAGACCATGT
32226353 AAGAGGAGTG
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
50 23 0.42
52 1 0.02
53 2 0.04
55 1 0.02
56 28 0.51
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (54 bp):
TAAGACCATGTCTGGGACATGACATTGGCATCACGAGGTATGAGAGGTCCTACA
Found at i:32228485 original size:27 final size:27
Alignment explanation
Indices: 32228415--32228533 Score: 138
Period size: 27 Copynumber: 4.6 Consensus size: 27
32228405 TAAATTGTGC
32228415 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
32228442 AG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
32228465 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
32228492 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
32228519 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32228534 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
23 19 0.24
25 6 0.08
27 54 0.68
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:32228544 original size:27 final size:27
Alignment explanation
Indices: 32228464--32228544 Score: 63
Period size: 27 Copynumber: 3.0 Consensus size: 27
32228454 ATTGACTATG
** * * **
32228464 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGAGCTCAATATA
* * *
32228491 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
* *
32228518 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
32228545 CATTCGTGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGCTCAATATA
Found at i:32249162 original size:225 final size:224
Alignment explanation
Indices: 32248758--32249223 Score: 792
Period size: 225 Copynumber: 2.1 Consensus size: 224
32248748 CATCATCCAT
* * *
32248758 GACTATAAACATTAGCAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAGAGATACA
1 GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGATAAA
*
32248823 AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGTCCACAACTG
66 AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGGCCACAACTG
* * *
32248888 TTATCTACAAAATAACGTGAGAAAAATAATAAGCTCAAGTAGTTTAGTAAGATCATAGTGTAATA
131 TTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAATA
32248953 TCTACTTGACTTATTTTAGTTAACATAAG
196 TCTACTTGACTTATTTTAGTTAACATAAG
* *
32248982 GACTATCAACATTAACAAACTCATAACAAAACCTATATGCATGCCACAACCCAAAAAAAGATAAA
1 GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGAT-AA
*
32249047 AAAAGCTACCAAAATAGTTGGATAGTGTGAGCTTTATGGCCT-ATCCTTCCGATCAGGCCACAAC
65 AAAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGG-CTGATCCTTCCGATCAGGCCACAAC
32249111 TGTTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAA
129 TGTTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAA
32249176 TATCTACTTGACTTATTTTAGTTAACATAAG
194 TATCTACTTGACTTATTTTAGTTAACATAAG
*
32249207 GACT-TAAAAATATAACA
1 GACTATAAACAT-TAACA
32249224 TGCTAACTAA
Statistics
Matches: 227, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
224 63 0.28
225 162 0.71
226 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (224 bp):
GACTATAAACATTAACAAACTCATAACAAAACCTATATACATGCCACAACCCAAAAAAAGATAAA
AAAGCTACCAAAATAGTTGAATAGTGTGAGCTTTATGGCTGATCCTTCCGATCAGGCCACAACTG
TTATCTACAAAATAACATGAGAAAAATAATAAGCTCAAATAGCTTAGTAAGATCATAGTGTAATA
TCTACTTGACTTATTTTAGTTAACATAAG
Found at i:32249468 original size:20 final size:20
Alignment explanation
Indices: 32249445--32249506 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
32249435 ATGTAGTTAA
*
32249445 GGGCACCGAACTGCAAACAG
1 GGGCACCGAAGTGCAAACAG
*
32249465 GGGCA-CG-AGTGTGAGAACAG
1 GGGCACCGAAGTG-CA-AACAG
*
32249485 GGGCACCGAAGTGCAAATAG
1 GGGCACCGAAGTGCAAACAG
32249505 GG
1 GG
32249507 ACATTGAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 21 0.62
21 3 0.09
22 4 0.12
ACGTcount: A:0.32, C:0.21, G:0.39, T:0.08
Consensus pattern (20 bp):
GGGCACCGAAGTGCAAACAG
Found at i:32249530 original size:40 final size:40
Alignment explanation
Indices: 32249436--32249593 Score: 110
Period size: 40 Copynumber: 4.0 Consensus size: 40
32249426 GGCACATACA
* * *
32249436 TGTAGTTAA-GGGCACCGAACTGCAAACAGGGGCA-CG-AG
1 TGTA-TTAAGGGGCACCGAAGTGCAAATAGGGACATCGAAG
** *
32249474 TGTGAGAACAGGGGCACCGAAGTGCAAATAGGGACATTGAAG
1 TGT-ATTA-AGGGGCACCGAAGTGCAAATAGGGACATCGAAG
* * * *
32249516 TGTATTCAGTGGCA-C-AATTGTGCAAATAGGCACACCGAAG
1 TGTATTAAGGGGCACCGAA--GTGCAAATAGGGACATCGAAG
* ** *
32249556 TGTATTAAGGGGCACAGTTGTGCAAACAGGGACATCGA
1 TGTATTAAGGGGCACCGAAGTGCAAATAGGGACATCGA
32249594 GTTATATTCT
Statistics
Matches: 90, Mismatches: 21, Indels: 16
0.71 0.17 0.13
Matches are distributed among these distances:
38 6 0.07
39 3 0.03
40 74 0.82
41 2 0.02
42 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.32, T:0.18
Consensus pattern (40 bp):
TGTATTAAGGGGCACCGAAGTGCAAATAGGGACATCGAAG
Found at i:32255674 original size:46 final size:45
Alignment explanation
Indices: 32255622--32255758 Score: 139
Period size: 46 Copynumber: 2.9 Consensus size: 45
32255612 ATGAGTTTTC
*
32255622 GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGCTACT
1 GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGATA-T
* * * *
32255668 GTATAAGGCTATATCTGGGATATAGCATCAGTGTGATATGTGATAT
1 GTATAAGACCATATC-GGGATATGGCATCGGTGTGATATGTGATAT
* * * **
32255714 GTAGAAGACCATGATTGGGCTATGGTTTCGGTGTGTGATATGTGA
1 GTATAAGACCAT-ATCGGGATATGGCATC-G-GTGTGATATGTGA
32255759 CAAGGTGCAA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
46 32 0.44
47 28 0.38
48 13 0.18
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (45 bp):
GTATAAGACCATATCGGGATATGGCATCGGTGTGATATGTGATAT
Found at i:32257261 original size:18 final size:18
Alignment explanation
Indices: 32257238--32257275 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32257228 ATTACTGATC
*
32257238 TGAACTGAGTTGAAAGTT
1 TGAACTAAGTTGAAAGTT
32257256 TGAACTAAGTTGAAAGTT
1 TGAACTAAGTTGAAAGTT
32257274 TG
1 TG
32257276 GTAATGCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.34
Consensus pattern (18 bp):
TGAACTAAGTTGAAAGTT
Found at i:32261220 original size:47 final size:50
Alignment explanation
Indices: 32261151--32261279 Score: 129
Period size: 53 Copynumber: 2.6 Consensus size: 50
32261141 ATTGATGAAA
* * * *
32261151 AAGACCATGGTTGGACTATGGCAACA-TGCGATATG-TGA-TTTTCGTAT
1 AAGACCATAGCTGGGCTATGGCAACAGTGCGATATGATGAGTTTCCGTAT
* *
32261198 AAGACCATAGCTGGGCTATGGCATCAGTGTGATATGATTATGAGTTTCCGTAT
1 AAGACCATAGCTGGGCTATGGCAACAGTGCGATATG---ATGAGTTTCCGTAT
* * *
32261251 AAGACCATATCTGGGTTATGGCATCAGTG
1 AAGACCATAGCTGGGCTATGGCAACAGTG
32261280 TGTTAGCTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 22 0.32
48 8 0.12
52 3 0.04
53 35 0.51
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
AAGACCATAGCTGGGCTATGGCAACAGTGCGATATGATGAGTTTCCGTAT
Found at i:32261642 original size:20 final size:20
Alignment explanation
Indices: 32261619--32261691 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
32261609 TCAGTAGTAC
*
32261619 AGATAAGCTGCCAGTATTGT
1 AGATAAACTGCCAGTATTGT
* * *
32261639 AGATAAACTGCTAGTAATGC
1 AGATAAACTGCCAGTATTGT
* * *
32261659 AGACAAGCTACCAGTATTGT
1 AGATAAACTGCCAGTATTGT
32261679 AGATAAACTGCCA
1 AGATAAACTGCCA
32261692 ATAGTGTGGT
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (20 bp):
AGATAAACTGCCAGTATTGT
Found at i:32261706 original size:40 final size:40
Alignment explanation
Indices: 32261618--32261694 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
32261608 GTCAGTAGTA
* * * *
32261618 CAGATAAGCTGCCAGTATTGTAGATAAACTGCTAGTAATG
1 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATAATG
32261658 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATA
1 CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATA
32261695 GTGTGGTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (40 bp):
CAGACAAGCTACCAGTATTGTAGATAAACTGCCAATAATG
Found at i:32269251 original size:15 final size:15
Alignment explanation
Indices: 32269228--32269258 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32269218 TGTTTAAAAG
32269228 TTATGATTTTTATTT
1 TTATGATTTTTATTT
*
32269243 TTATTATTTTTATTT
1 TTATGATTTTTATTT
32269258 T
1 T
32269259 GAAAGATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
TTATGATTTTTATTT
Found at i:32273785 original size:50 final size:49
Alignment explanation
Indices: 32273723--32273907 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 49
32273713 GTGAAAGTCG
*
32273723 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
* * * * * *
32273772 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGCACC-AGATAGCT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAAT-G-A
* * * * *
32273823 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGA
*
32273875 TGGTCACA-GTGTAGTACTATGTGTAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
32273908 GGTGAACCGG
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
49 4 0.04
50 61 0.56
51 39 0.36
52 2 0.02
53 1 0.01
54 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
Found at i:32273845 original size:101 final size:101
Alignment explanation
Indices: 32273726--32273907 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
32273716 AAAGTCGTGG
*
32273726 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGAT-GGTCACA-GTGTAGT
32273789 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
* * *
32273827 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACAGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
*
32273892 TATGTGTAGGCTACTA
66 TATGTGCAGGCTACTA
32273908 GGTGAACCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
101 61 0.82
102 7 0.09
103 6 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
TATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
Found at i:32274004 original size:46 final size:43
Alignment explanation
Indices: 32273913--32274011 Score: 101
Period size: 46 Copynumber: 2.2 Consensus size: 43
32273903 TACTAGGTGA
* *
32273913 ACCGGTATCATTAATTATAAGGTGGTTGCTATATGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
* * *
32273956 ACCGGATATCATTGATTAGAAAGGGTGGTTGCTGTGTGCTAAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATATGCT-AATCCC
32274002 ACCGTGTATC
1 ACCG-GTATC
32274012 TGTTACTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.24
45 2 0.04
46 25 0.54
47 3 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
Found at i:32275760 original size:50 final size:49
Alignment explanation
Indices: 32275698--32275882 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 49
32275688 GTGAAAGTCG
*
32275698 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
* * * * * *
32275747 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGCACC-AGATAGCT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAAT-G-A
* * * * *
32275798 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGA
*
32275850 TGGTCACA-GTGTAGTACTATGTGTAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
32275883 GGTGAACCGG
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
49 4 0.04
50 61 0.56
51 39 0.36
52 2 0.02
53 1 0.01
54 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGA
Found at i:32275820 original size:101 final size:101
Alignment explanation
Indices: 32275701--32275882 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
32275691 AAAGTCGTGG
*
32275701 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAAAATGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGAT-GGTCACA-GTGTAGT
32275764 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
* * *
32275802 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACAGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
*
32275867 TATGTGTAGGCTACTA
66 TATGTGCAGGCTACTA
32275883 GGTGAACCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
101 61 0.82
102 7 0.09
103 6 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGCAAAATGATGGTCACAGTGTAGTAC
TATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
Found at i:32275979 original size:46 final size:43
Alignment explanation
Indices: 32275888--32275986 Score: 101
Period size: 46 Copynumber: 2.2 Consensus size: 43
32275878 TACTAGGTGA
* *
32275888 ACCGGTATCATTAATTATAAGGTGGTTGCTATATGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
* * *
32275931 ACCGGATATCATTGATTAGAAAGGGTGGTTGCTGTGTGCTAAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATATGCT-AATCCC
32275977 ACCGTGTATC
1 ACCG-GTATC
32275987 TGTTACTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.24
45 2 0.04
46 25 0.54
47 3 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTAATCCC
Found at i:32278077 original size:22 final size:23
Alignment explanation
Indices: 32278052--32278107 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
32278042 GATTACCCAA
*
32278052 TTAAATTAATTC-TATAATTAAT
1 TTAAATTAATGCGTATAATTAAT
*
32278074 TT-AATTCATGCGTATAATTAAT
1 TTAAATTAATGCGTATAATTAAT
*
32278096 TT-AATTCATGCG
1 TTAAATTAATGCG
32278108 ACAACCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 7 0.23
22 24 0.77
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (23 bp):
TTAAATTAATGCGTATAATTAAT
Done.