Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 102 of 161
Found at i:32292443 original size:11 final size:11
Alignment explanation
Indices: 32292414--32292446 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
32292404 AGTGAAAAAG
32292414 AAAAGTGAG-A
1 AAAAGTGAGAA
32292424 AAAAGTGAGAA
1 AAAAGTGAGAA
*
32292435 AAAAATGAGAA
1 AAAAGTGAGAA
32292446 A
1 A
32292447 TTCCCAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (11 bp):
AAAAGTGAGAA
Found at i:32292618 original size:50 final size:51
Alignment explanation
Indices: 32292549--32292689 Score: 205
Period size: 50 Copynumber: 2.8 Consensus size: 51
32292539 GAAAGTGAAG
*
32292549 GTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGA-A
1 GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
* * * *
32292599 -TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATA
1 GTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
*
32292650 GTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATG
1 GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
32292690 GGAAATGATA
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
49 4 0.05
50 39 0.49
51 33 0.41
52 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (51 bp):
GTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
Found at i:32296043 original size:38 final size:38
Alignment explanation
Indices: 32295989--32296102 Score: 192
Period size: 38 Copynumber: 3.0 Consensus size: 38
32295979 TATATAATTA
32295989 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
* *
32296027 TACCCCTGATCACACTTACGTGCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
*
32296065 TACCCCTGATCGCATTTACGTGCCCCTGTTGTACTTCG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTCG
32296103 ATACTCCCGA
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 56 0.80
39 14 0.20
ACGTcount: A:0.15, C:0.34, G:0.18, T:0.32
Consensus pattern (38 bp):
TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
Found at i:32296119 original size:39 final size:38
Alignment explanation
Indices: 32295989--32296120 Score: 169
Period size: 38 Copynumber: 3.4 Consensus size: 38
32295979 TATATAATTA
* *
32295989 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTCGG
1 TACCCCTGATAGCATTTACGTGCCCTGTTGTACTTCGG
* *
32296027 TACCCCTGATCA-CACTTACGTGCCCTATTGTACTTCGG
1 TACCCCTGAT-AGCATTTACGTGCCCTGTTGTACTTCGG
* *
32296065 TACCCCTGATCGCATTTACGTGCCCCTGTTGTACTTCGA
1 TACCCCTGATAGCATTTACGTG-CCCTGTTGTACTTCGG
32296104 TACTCCC-GATAGCATTT
1 TAC-CCCTGATAGCATTT
32296121 TTGTATCGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 54 0.65
39 26 0.31
40 3 0.04
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (38 bp):
TACCCCTGATAGCATTTACGTGCCCTGTTGTACTTCGG
Found at i:32298577 original size:49 final size:49
Alignment explanation
Indices: 32298523--32298620 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
32298513 ACACAAAAAG
* * *
32298523 AAAATACATGTTGAATTTACTGAATATGCTATTAAGGTTATAAATCTTA
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
32298572 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
32298621 TAGGTCGGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (49 bp):
AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
Found at i:32302627 original size:39 final size:39
Alignment explanation
Indices: 32302554--32302832 Score: 330
Period size: 39 Copynumber: 7.2 Consensus size: 39
32302544 TATATAATTA
* * * * *
32302554 TACCCCTGATTGCACCTACGCG-CCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * *
32302592 TACCTCTGATCGCACTTACGTGCCCCTGTTATACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * *
32302631 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* **
32302670 TACCCCCGATCATACTTACGTGCCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* *
32302709 TACCCCTGATCGCACTTACATG-CCCTGTTGTAATTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
*
32302747 TACCCCTGATCGCATTTACGTG-CCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * * * * *
32302785 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
32302824 TACCCCTGA
1 TACCCCTGA
32302833 CCGAACTTTT
Statistics
Matches: 206, Mismatches: 33, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
38 86 0.42
39 120 0.58
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
Found at i:32302636 original size:19 final size:19
Alignment explanation
Indices: 32302614--32302716 Score: 57
Period size: 19 Copynumber: 5.3 Consensus size: 19
32302604 CACTTACGTG
32302614 CCCCTGTTATACTTCGGTA
1 CCCCTGTTATACTTCGGTA
***
32302633 CCCCTGATCGCACTTAC-GTA
1 CCCCTG-TTATACTT-CGGTA
* * *
32302653 CCCCTATTCTACTTTGGTA
1 CCCCTGTTATACTTCGGTA
* * *
32302672 CCCCCGATCATACTTAC-GTG
1 CCCCTG-TTATACTT-CGGTA
* *
32302692 CCCCTGTTGTACTTTGGTA
1 CCCCTGTTATACTTCGGTA
32302711 CCCCTG
1 CCCCTG
32302717 ATCGCACTTA
Statistics
Matches: 59, Mismatches: 19, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
19 32 0.54
20 26 0.44
21 1 0.02
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.33
Consensus pattern (19 bp):
CCCCTGTTATACTTCGGTA
Found at i:32302746 original size:38 final size:38
Alignment explanation
Indices: 32302554--32302864 Score: 325
Period size: 39 Copynumber: 8.1 Consensus size: 38
32302544 TATATAATTA
* * * * *
32302554 TACCCCTGATTGCACCTACGCGCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
* * *
32302592 TACCTCTGATCGCACTTACGTGCCCCTGTTATACTTCGG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTTGG
* * *
32302631 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGG
1 TACCCCTGATCGCACTTACGT-GCCCTGTTGTACTTTGG
* **
32302670 TACCCCCGATCATACTTACGTGCCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTG-CCCTGTTGTACTTTGG
* *
32302709 TACCCCTGATCGCACTTACATGCCCTGTTGTAATTTGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
*
32302747 TACCCCTGATCGCATTTACGTGCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
* * * * *
32302785 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGC-CCTGTTGTACTTTGG
* * *** * *
32302824 TACCCCTGACCGAACTTTTATGCCCTGTTGGACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
32302862 TAC
1 TAC
32302865 TCCCAATAGC
Statistics
Matches: 230, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
38 103 0.45
39 127 0.55
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (38 bp):
TACCCCTGATCGCACTTACGTGCCCTGTTGTACTTTGG
Found at i:32302864 original size:77 final size:77
Alignment explanation
Indices: 32302554--32302864 Score: 322
Period size: 77 Copynumber: 4.0 Consensus size: 77
32302544 TATATAATTA
* * ** * * *
32302554 TACCCCTGATTGCACCTACGCGCCCTATTGTACTTCGGTACCTCTGATCGCACTTACGTGCCCCT
1 TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
*
32302619 GTTATACTTCGG
66 GTTGTACTTCGG
* * * * * *
32302631 TACCCCTGATCGCACTTACGTACCCCTATTCTACTTTGGTACCCCCGATC-ATACTTACGTGCCC
1 TACCCCTGATCGCACTTACAT-GCCCTATTGTACTTCGGTACCCCTGATCGA-ACTTACATGCCC
*
32302695 CTGTTGTACTTTGG
64 CTGTTGTACTTCGG
* * * * * *
32302709 TACCCCTGATCGCACTTACATGCCCTGTTGTAATTTGGTACCCCTGATCGCATTTACGTG-CCCT
1 TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
*
32302773 GTTGTACTTTGG
66 GTTGTACTTCGG
* * * **
32302785 TACCCTTGATTGCACTTACATGCACCTATTGTACTTCGGTACCCCTGACCGAACTTTTATG-CCC
1 TACCCCTGATCGCACTTACATGC-CCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCC
*
32302849 TGTTGGACTTCGG
65 TGTTGTACTTCGG
32302862 TAC
1 TAC
32302865 TCCCAATAGC
Statistics
Matches: 198, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
76 37 0.19
77 94 0.47
78 67 0.34
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (77 bp):
TACCCCTGATCGCACTTACATGCCCTATTGTACTTCGGTACCCCTGATCGAACTTACATGCCCCT
GTTGTACTTCGG
Found at i:32311312 original size:45 final size:45
Alignment explanation
Indices: 32311210--32311393 Score: 248
Period size: 45 Copynumber: 4.1 Consensus size: 45
32311200 AATAATAACA
* * *
32311210 GATACACGGTGG-ATCAGCACATAGC-ACCACCCTTATAGTCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * *
32311253 GATACTCGGTGGAATCAGCACATAGCAACCATCTTCATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
32311298 -AGTACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
1 GA-TACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * *
32311343 GATATCTGGTGGAATCAGCACACAGCAACCACCTTTATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
*
32311388 GGTACC
1 GATACC
32311394 TGGTACACGT
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
43 11 0.09
44 14 0.11
45 98 0.79
46 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
Found at i:32319109 original size:22 final size:21
Alignment explanation
Indices: 32319079--32319120 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
32319069 ACACCAAAAC
* *
32319079 AGGCTTTTAGCGGCTCTTTTTT
1 AGGCCTTTAGC-GCGCTTTTTT
32319101 AGGCCTTTAGCGCGCTTTTT
1 AGGCCTTTAGCGCGCTTTTT
32319121 AGCACCGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.10, C:0.21, G:0.24, T:0.45
Consensus pattern (21 bp):
AGGCCTTTAGCGCGCTTTTTT
Found at i:32319245 original size:43 final size:43
Alignment explanation
Indices: 32319184--32319435 Score: 283
Period size: 43 Copynumber: 5.9 Consensus size: 43
32319174 GCATTTTTTT
* * *
32319184 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
*
32319227 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** ** * *
32319270 ACCTTTAGTAGCG-TATTTTACACAAACGCAGCTAAAGACCATG
1 ACCTTTAGCGGCGCT-TTTCCCACAAACGCCGCTAAAGACCAAG
* *
32319313 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** * * *
32319356 ACCTTTAGCGGTACTTTTACCACAAACACCGCTAAAGAACAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
* * * *
32319399 ACATTTAGTGGCGC-TTTCTCCAAAAACGCCACTAAAG
1 ACCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAAG
32319436 GTCACGAAAA
Statistics
Matches: 177, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
42 4 0.02
43 172 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
Found at i:32319426 original size:129 final size:129
Alignment explanation
Indices: 32319184--32319435 Score: 328
Period size: 129 Copynumber: 2.0 Consensus size: 129
32319174 GCATTTTTTT
* * * *
32319184 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* * * * * *
32319249 CAAACGCCGCTAAAGACCATGACCTTTAGTAGCGTATTTTACACAAACG-CAGCTAAAGACCATG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCA-CTAAAGACCATG
* * * *
32319313 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGTACTTTTACCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* *
32319378 CAAACACCGCTAAAGAACAAGACATTTAGTGGCGCT-TTCTCCAAAAACGCCACTAAAG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCG-TATTCTACAAAAACGCCACTAAAG
32319436 GTCACGAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 102 0.97
130 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (129 bp):
ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCACTAAAGACCATG
Found at i:32320361 original size:23 final size:23
Alignment explanation
Indices: 32320335--32320492 Score: 123
Period size: 23 Copynumber: 6.9 Consensus size: 23
32320325 AATGGAAAGT
32320335 AGCACTTTAACACTTCAATTTAC
1 AGCACTTTAACACTTCAATTTAC
*
32320358 AGCA-TTTAAACACTTCAATTTGC
1 AGCACTTT-AACACTTCAATTTAC
*
32320381 AGCACTTTAACA-TATCAATTAAC
1 AGCACTTTAACACT-TCAATTTAC
* *
32320404 AACA-TTTATACACATCAA-TTAC
1 AGCACTTTA-ACACTTCAATTTAC
** *
32320426 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTTAACACT-TCAATTTAC
* *
32320449 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTTAACACTTCAATTTAC
*
32320472 AGCACTTAAACACTTCAATTT
1 AGCACTTTAACACTTCAATTT
32320493 NNNNNNNNNN
Statistics
Matches: 110, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
22 22 0.20
23 84 0.76
24 4 0.04
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (23 bp):
AGCACTTTAACACTTCAATTTAC
Found at i:32320490 original size:68 final size:68
Alignment explanation
Indices: 32320335--32320491 Score: 151
Period size: 68 Copynumber: 2.3 Consensus size: 68
32320325 AATGGAAAGT
* * * *
32320335 AGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATATCAAT
1 AGCACTTAAACACTTCAA-TTACAGCATTAAAACACTTCAATTTCCAGCACTTAAACATATCAAT
32320400 TAAC
65 TAAC
* * * *
32320404 AACATTTATACACATCAATTACAGCGA-TAAAACA-TCTCAATTTCCAGCAAC-TAAACACT-TC
1 AGCACTTAAACACTTCAATTACAGC-ATTAAAACACT-TCAATTTCCAGC-ACTTAAACA-TATC
**
32320465 AATTTGC
62 AATTAAC
32320472 AGCACTTAAACACTTCAATT
1 AGCACTTAAACACTTCAATT
32320492 TNNNNNNNNN
Statistics
Matches: 70, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
67 1 0.01
68 52 0.74
69 17 0.24
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (68 bp):
AGCACTTAAACACTTCAATTACAGCATTAAAACACTTCAATTTCCAGCACTTAAACATATCAATT
AAC
Found at i:32320492 original size:46 final size:46
Alignment explanation
Indices: 32320335--32320492 Score: 153
Period size: 46 Copynumber: 3.5 Consensus size: 46
32320325 AATGGAAAGT
*
32320335 AGCACTTTAACACT-TCAATTTACAGCATTTAAACACTTCAATTTGC
1 AGCACTTAAACA-TATCAATTTACAGCATTTAAACACTTCAATTTGC
* * * * * *
32320381 AGCACTTTAACATATCAATTAACAACATTTATACACATCAA-TTAC
1 AGCACTTAAACATATCAATTTACAGCATTTAAACACTTCAATTTGC
* * * **
32320426 AGCGA-TAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
1 AGC-ACTTAAACATATCAATTTACAGCATTTAAACACTTCAATTTGC
32320472 AGCACTTAAACACT-TCAATTT
1 AGCACTTAAACA-TATCAATTT
32320493 NNNNNNNNNN
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
45 34 0.38
46 55 0.61
47 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (46 bp):
AGCACTTAAACATATCAATTTACAGCATTTAAACACTTCAATTTGC
Found at i:32339146 original size:22 final size:21
Alignment explanation
Indices: 32339116--32339157 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
32339106 ACACCAAAAC
* *
32339116 AGGCTTTTAGCGGCTCTTTTTT
1 AGGCCTTTAGC-GCGCTTTTTT
32339138 AGGCCTTTAGCGCGCTTTTT
1 AGGCCTTTAGCGCGCTTTTT
32339158 AGCACCGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.10, C:0.21, G:0.24, T:0.45
Consensus pattern (21 bp):
AGGCCTTTAGCGCGCTTTTTT
Found at i:32339282 original size:43 final size:43
Alignment explanation
Indices: 32339221--32339472 Score: 283
Period size: 43 Copynumber: 5.9 Consensus size: 43
32339211 GCATTTTTTT
* * *
32339221 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
*
32339264 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** ** * *
32339307 ACCTTTAGTAGCG-TATTTTACACAAACGCAGCTAAAGACCATG
1 ACCTTTAGCGGCGCT-TTTCCCACAAACGCCGCTAAAGACCAAG
* *
32339350 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
** * * *
32339393 ACCTTTAGCGGTACTTTTACCACAAACACCGCTAAAGAACAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
* * * *
32339436 ACATTTAGTGGCGC-TTTCTCCAAAAACGCCACTAAAG
1 ACCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAAG
32339473 GTCACGAAAA
Statistics
Matches: 177, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
42 4 0.02
43 172 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG
Found at i:32339463 original size:129 final size:129
Alignment explanation
Indices: 32339221--32339472 Score: 328
Period size: 129 Copynumber: 2.0 Consensus size: 129
32339211 GCATTTTTTT
* * * *
32339221 ACCTTTAGCAGCGCTTTTCCCATAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* * * * * *
32339286 CAAACGCCGCTAAAGACCATGACCTTTAGTAGCGTATTTTACACAAACG-CAGCTAAAGACCATG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCA-CTAAAGACCATG
* * * *
32339350 ACCTTTAGCGGGGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGTACTTTTACCA
1 ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
* *
32339415 CAAACACCGCTAAAGAACAAGACATTTAGTGGCGCT-TTCTCCAAAAACGCCACTAAAG
66 CAAACACCGCTAAAGAACAAGACATTTAGTAGCG-TATTCTACAAAAACGCCACTAAAG
32339473 GTCACGAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 102 0.97
130 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (129 bp):
ACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTACCA
CAAACACCGCTAAAGAACAAGACATTTAGTAGCGTATTCTACAAAAACGCCACTAAAGACCATG
Found at i:32340407 original size:23 final size:23
Alignment explanation
Indices: 32340380--32340920 Score: 317
Period size: 23 Copynumber: 23.7 Consensus size: 23
32340370 GTATCACTTT
32340380 AACACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* ** *
32340403 AACACCTCAATTTGTAGTACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
32340426 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * * *
32340449 TACACATCAA-TTATAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* **
32340471 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* *
32340494 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
*
32340517 AACACTTCAATTTATAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* * *
32340540 AACACTTAAATTTTCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
32340563 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * *
32340586 TACACCTCAA-TTACAGACA-TAA
1 AACACTTCAATTTACAG-CATTTA
* **
32340608 AACATCTT-AATTTCCAGCAACTA
1 AACA-CTTCAATTTACAGCATTTA
* *
32340631 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
32340654 AATACTTCAATTTGCAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
32340677 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * * *
32340700 TACACCTCAA-TTATAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* **
32340722 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* *
32340745 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
32340768 AACACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
32340791 AACA-TATCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * *
32340814 TACACCTCAA-TTACAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* **
32340836 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* * *
32340859 AATACTTCAATTTGCAGCACTTA
1 AACACTTCAATTTACAGCATTTA
* *
32340882 AACACTTCAATTTATAACATTTA
1 AACACTTCAATTTACAGCATTTA
32340905 AACACTTCAATTTACA
1 AACACTTCAATTTACA
32340921 AATCCACCAT
Statistics
Matches: 391, Mismatches: 95, Indels: 64
0.71 0.17 0.12
Matches are distributed among these distances:
22 68 0.17
23 315 0.81
24 8 0.02
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (23 bp):
AACACTTCAATTTACAGCATTTA
Found at i:32340620 original size:137 final size:137
Alignment explanation
Indices: 32340374--32340678 Score: 470
Period size: 137 Copynumber: 2.2 Consensus size: 137
32340364 TGGAATGTAT
* * * *
32340374 CACTTTAACACTTCAATTTACAGCATTTAAACACCTCAATTTGTAGTACTTTAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGTAGCACTTAAACATATCAATTA
*
32340439 ACAACATTTATACACATCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
32340504 TTTGCAG
131 TTTGCAG
* *
32340511 CACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTT-TCAGCACTTAAACATATCAATT
1 CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGT-AGCACTTAAACATATCAATT
* *
32340575 AACAACATTTATACACCTCAATTACAGAC-ATAAAACATCTTAATTTCCAGCAACTAAACACTTC
65 AACAACATTTATACACATCAATTACAG-CGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
32340639 AATTTGCAG
129 AATTTGCAG
* *
32340648 CACTTAAATACTTCAATTTGCAGCACTTTAA
1 CACTTAAACACTTCAATTTACAGCA-TTTAA
32340679 CATATCAATT
Statistics
Matches: 153, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
136 1 0.01
137 146 0.95
138 6 0.04
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (137 bp):
CACTTAAACACTTCAATTTACAGCATTTAAACACCTAAATTTGTAGCACTTAAACATATCAATTA
ACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
TTTGCAG
Found at i:32340710 original size:137 final size:136
Alignment explanation
Indices: 32340374--32340818 Score: 429
Period size: 137 Copynumber: 3.2 Consensus size: 136
32340364 TGGAATGTAT
* * * *** ** * *
32340374 CACTTTAACACTTCAATTTACAGCATTTAAACACCTCAATTTGTAGTACTTTAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
* * *
32340439 ACAACATTTATACACATCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACCTCAATTACAGC-ATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
32340504 TTTGCAG
130 TTTGCAG
* ** * *
32340511 CACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTTTCAGCACTTAAACATATCAATTA
1 CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
32340576 ACAACATTTATACACCTCAATTACAGACATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
66 ACAACATTTATACACCTCAATTACAG-CATAAAACATCTTAATTTCCAGCAACTAAACACTTCAA
32340641 TTTGCAG
130 TTTGCAG
* * * * * *
32340648 CACTTAAATACTTCAATTTGCAGCACTTT-AACA-TATCAATTAACAACATTTATACACCTCAAT
1 CACTTAAACACTTCAATTTACAGCA-TTTAAACACT-TAAATTAACAACACTTAAACACATCAAT
* * * * * * *
32340711 T-ATAGCGA-TAAAACATCTCAATTTCCAGCA-ACTAAACA-CTTCAATTTGCAGC-ACTTAAAC
64 TAACAAC-ATTTATACACCTCAA-TTACAGCATA--AAACATCTT-AATTTCCAGCAAC-TAAAC
32340771 ACTTCAATTTGCAG
123 ACTTCAATTTGCAG
* * *
32340785 CACTTAAACA-TATCAATTAACAACATTTATACAC
1 CACTTAAACACT-TCAATTTACAGCATTTAAACAC
32340819 CTCAATTACA
Statistics
Matches: 262, Mismatches: 34, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
135 1 0.00
136 25 0.10
137 232 0.89
138 4 0.02
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (136 bp):
CACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTAACAACACTTAAACACATCAATTA
ACAACATTTATACACCTCAATTACAGCATAAAACATCTTAATTTCCAGCAACTAAACACTTCAAT
TTGCAG
Found at i:32340801 original size:91 final size:91
Alignment explanation
Indices: 32340374--32340920 Score: 340
Period size: 91 Copynumber: 6.0 Consensus size: 91
32340364 TGGAATGTAT
* * * * * * *
32340374 CACTTTAACACT-TCAATTTACAGCATTTAAACACCTCAATTTGTAGTACTTTAACATATCAATT
1 CACTTAAACACTATCAATTTCCAGCACTTAAACACTTCAATTTGCAGCACTTAAACAT-TCAATT
* * * * *
32340438 AACAACATTTATACACATCAA-TTATAG
65 -ATAGCATTTAAACACTTCAATTTACAG
* *
32340465 CGA-TAAAACA-TCTCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACTTCAA
1 C-ACTTAAACACTATCAATTTCCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACA-TTCAA
* *
32340527 TTTATAGCATTTAAACACTTAAATTTTCAG
63 -TTATAGCATTTAAACACTTCAATTTACAG
** * * * * * * *
32340557 CACTTAAACA-TATCAATTAACAACATTTATACACCTCAA-TTACAG-ACATAAAACATCTTAAT
1 CACTTAAACACTATCAATTTCCAGCACTTAAACACTTCAATTTGCAGCAC-TTAAACAT-TCAAT
** *
32340619 T-TCCAGCAACTAAACACTTCAATTTGCAG
64 TAT--AGCATTTAAACACTTCAATTTACAG
* * * ** * * * *
32340648 CACTTAAATACT-TCAATTTGCAGCACTTTAACA-TATCAATTAACAACATTTATACACCTCAAT
1 CACTTAAACACTATCAATTTCCAGCACTTAAACACT-TCAATTTGCAGCACTTAAACA-TTCAAT
* *
32340711 TATAGCGA-TAAAACA-TCTCAATTTCCAG
64 TATAGC-ATTTAAACACT-TCAATTTACAG
*
32340739 CAAC-TAAACACT-TCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAACATATCAAT
1 C-ACTTAAACACTATCAATTTCCAGCACTTAAACACTTCAATTTGCAGCACTTAAACAT-TCAAT
* * * *
32340802 TAACAACATTTATACACCTCAA-TTACAG
64 T-ATAGCATTTAAACACTTCAATTTACAG
* * *
32340830 CGA-TAAAACA-TCTCAATTTCCAGCAAC-TAAATACTTCAATTTGCAGCACTTAAACACTTCAA
1 C-ACTTAAACACTATCAATTTCCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACA-TTCAA
*
32340892 TTTATAACATTTAAACACTTCAATTTACA
63 -TTATAGCATTTAAACACTTCAATTTACA
32340921 AATCCACCAT
Statistics
Matches: 355, Mismatches: 69, Indels: 63
0.73 0.14 0.13
Matches are distributed among these distances:
89 1 0.00
90 8 0.02
91 267 0.75
92 77 0.22
93 2 0.01
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (91 bp):
CACTTAAACACTATCAATTTCCAGCACTTAAACACTTCAATTTGCAGCACTTAAACATTCAATTA
TAGCATTTAAACACTTCAATTTACAG
Found at i:32340916 original size:114 final size:114
Alignment explanation
Indices: 32340500--32340894 Score: 659
Period size: 114 Copynumber: 3.5 Consensus size: 114
32340490 ACTAAACACT
* ** * * *
32340500 TCAATTTGCAGC-ACTTAAACACTTCAATTTATAGCATTTAAACACTTAAATTTTCAGCACTTAA
1 TCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAA
32340564 ACATATCAATTAACAACATTTATACACCTCAATTACAGAC-ATAAAACATC
65 ACATATCAATTAACAACATTTATACACCTCAATTACAG-CGATAAAACATC
* * *
32340614 TTAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAATACTTCAATTTGCAGCACTTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
*
32340679 CATATCAATTAACAACATTTATACACCTCAATTATAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
32340728 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
32340793 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
*
32340842 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTT
32340895 ATAACATTTA
Statistics
Matches: 264, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
113 1 0.00
114 261 0.99
115 2 0.01
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.31
Consensus pattern (114 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
Found at i:32345595 original size:41 final size:41
Alignment explanation
Indices: 32345550--32345793 Score: 335
Period size: 41 Copynumber: 6.0 Consensus size: 41
32345540 TCAATTCGGG
* * *
32345550 ATTAGCGGCGCTTTTTAAAAAATGCCACTAAAGATCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * * * *
32345591 ATTAGCGGTGCTTTTTCAAAAACGTCACTACAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
*
32345632 ATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * *
32345673 ATTAGCGGTGCTTTTTCAAAAACGCCGCGAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
*
32345714 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGACC
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
* * * *
32345755 AATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGCCCCGA
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGA
32345794 AAGGTCAAAA
Statistics
Matches: 179, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 179 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
Found at i:32345793 original size:82 final size:82
Alignment explanation
Indices: 32345550--32345793 Score: 373
Period size: 82 Copynumber: 3.0 Consensus size: 82
32345540 TCAATTCGGG
* * *
32345550 ATTAGCGGCGCTTTTTAAAAAATGCCACTAAAGATCCGAGCATTAGCGGTGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
*
32345615 TCA-CTACAGACCCGAGC
66 -CAGCTAAAGACCCGAGC
*
32345632 ATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
* *
32345697 CCGCGAAAGACCCGAGC
66 CAGCTAAAGACCCGAGC
* * *
32345714 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
*
32345779 CAGCTAAAGCCCCGA
66 CAGCTAAAGACCCGA
32345794 AAGGTCAAAA
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 1 0.01
82 146 0.99
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (82 bp):
ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
CAGCTAAAGACCCGAGC
Found at i:32345874 original size:40 final size:39
Alignment explanation
Indices: 32345828--32345920 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 39
32345818 GCTTAGGTTA
*
32345828 TTTGCGGCGTTTTTCCAAAAAACGC-CGCTAATGCTC-ATTT
1 TTTGCGGC-TTTTTAC-AAAAA-GCACGCTAATGCTCGATTT
**
32345868 TTTGCGGCTTTTTACGTAAAGCACGCTAATGCTCGATTT
1 TTTGCGGCTTTTTACAAAAAGCACGCTAATGCTCGATTT
*
32345907 TTAGCGGCATTTTT
1 TTTGCGGC-TTTTT
32345921 TATCCAATCG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
37 2 0.04
38 14 0.30
39 17 0.37
40 13 0.28
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (39 bp):
TTTGCGGCTTTTTACAAAAAGCACGCTAATGCTCGATTT
Found at i:32349576 original size:41 final size:41
Alignment explanation
Indices: 32349509--32349810 Score: 319
Period size: 41 Copynumber: 7.4 Consensus size: 41
32349499 TGTAAACGGA
* * *
32349509 GGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
* * * *
32349550 GGAACGCAAGTGCAATTTAGGAGTACCAAAGTACAACA-A-G
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAA-ATAGG
* * *
32349590 GGCACGCAAGTGCAATTCAAGGGTACCGAAGTACAAATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
* * * * *
32349631 GGCACATTAGTGTAATTTAGGGGCACCGTAGTACAAA-AGGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATA-GG
* * * * *
32349672 GGCACGTAACTGTAATTCTA-GGGTATCGAATTACAAATAGA
1 GGCACGTAAGTGCAATT-TAGGGGTACCGAAGTACAAATAGG
* *
32349713 GGCA-GATAAGTGCAATTTAGGGGTACCGAAGTACAAACATG
1 GGCACG-TAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
*
32349754 GGCACGTAAATGCAATTTAGGGGTACCGAAGTAC-AATAGG
1 GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
32349794 GGCACGTAAGTGCAATT
1 GGCACGTAAGTGCAATT
32349811 CAAGGTATAA
Statistics
Matches: 215, Mismatches: 37, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.00
40 57 0.27
41 152 0.71
42 5 0.02
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (41 bp):
GGCACGTAAGTGCAATTTAGGGGTACCGAAGTACAAATAGG
Found at i:32349581 original size:21 final size:21
Alignment explanation
Indices: 32349518--32349581 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
32349508 AGGCACGTAT
*
32349518 GTGCAATTCAGGGGTACCAAA
1 GTGCAATTTAGGGGTACCAAA
* * *
32349539 GTACAA-ATAGGGGAACGC-AA
1 GTGCAATTTAGGGGTAC-CAAA
*
32349559 GTGCAATTTAGGAGTACCAAA
1 GTGCAATTTAGGGGTACCAAA
32349580 GT
1 GT
32349582 ACAACAAGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (21 bp):
GTGCAATTTAGGGGTACCAAA
Found at i:32351292 original size:53 final size:53
Alignment explanation
Indices: 32351212--32351317 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
32351202 AATGACCTGA
*
32351212 GGGACTGAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
1 GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
*
32351265 GGGACTCAACTAGACCTATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
1 GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
32351318 CCATGTCTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (53 bp):
GGGACTCAACTAGACCCATCATAACATGCATATAGGGGTCTTTTCTAGGCATC
Found at i:32361189 original size:48 final size:48
Alignment explanation
Indices: 32361128--32361224 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
32361118 TAAATTTTTA
* *
32361128 AAAAGAAAAACAACAGCAGAAATGGAAACTTACCAACAACACATATCC
1 AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
* *
32361176 AAAATAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATCTCC
1 AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
32361224 A
1 A
32361225 CTCCCCTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.58, C:0.23, G:0.08, T:0.11
Consensus pattern (48 bp):
AAAAGAAAAACAACAACAGAAATGGAAACTTACCAACAAAACATATCC
Found at i:32379885 original size:27 final size:27
Alignment explanation
Indices: 32379854--32380031 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32379844 TAAATTGTAC
32379854 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32379881 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32379907 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32379935 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32379963 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32379990 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32380017 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32380032 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32379968 original size:82 final size:81
Alignment explanation
Indices: 32379855--32380010 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32379845 AAATTGTACA
* *
32379855 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32379919 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32379936 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32380001 TGCGAGTTGA
65 TGCGAATTGA
32380011 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32380022 original size:82 final size:81
Alignment explanation
Indices: 32379851--32380031 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32379841 GATTAAATTG
* *
32379851 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32379916 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32379932 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32379996 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32380014 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32380032 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32387948 original size:27 final size:27
Alignment explanation
Indices: 32387917--32388094 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32387907 TAAATTGTAC
32387917 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32387944 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32387970 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32387998 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32388026 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32388053 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32388080 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32388095 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32388031 original size:82 final size:81
Alignment explanation
Indices: 32387918--32388073 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32387908 AAATTGTACA
* *
32387918 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32387982 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32387999 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32388064 TGCGAGTTGA
65 TGCGAATTGA
32388074 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32388085 original size:82 final size:81
Alignment explanation
Indices: 32387914--32388094 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32387904 GATTAAATTG
* *
32387914 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32387979 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32387995 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32388059 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32388077 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32388095 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32407630 original size:21 final size:20
Alignment explanation
Indices: 32407606--32407652 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
32407596 TGTGGCTGTG
32407606 TCTGATTCTGGTGTGGATGCA
1 TCTGATT-TGGTGTGGATGCA
* *
32407627 TCTGGCTTTGTTGTGGATGCA
1 TCT-GATTTGGTGTGGATGCA
32407648 TCTGA
1 TCTGA
32407653 GTATGCTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 18 0.82
22 3 0.14
ACGTcount: A:0.13, C:0.15, G:0.32, T:0.40
Consensus pattern (20 bp):
TCTGATTTGGTGTGGATGCA
Found at i:32416998 original size:116 final size:115
Alignment explanation
Indices: 32416795--32417026 Score: 428
Period size: 116 Copynumber: 2.0 Consensus size: 115
32416785 TATAAATAAC
*
32416795 CGAAAGAAGAAGGAAAATGCTCATAAAATCAATACCCCACACGTCAAATATATCACAAACATAAA
1 CGAAAGAAGAAGGAAAAGGCTCATAAAATCAATACCCCACACGTCAAATATATCACAAACATAAA
*
32416860 AATTATGTAATGGCATTTGATTTCGACTACTTAAGTTGCCGGTTTTTTGA
66 AATTATGTAATGGCATTTGATTTCGACTACTTAAGTTGCCAGTTTTTTGA
32416910 CGAAAGAAGAAGGAAAAGGCCTCATAAAATCAATACCCCACACGTCAAATATATCACAAACATAA
1 CGAAAGAAGAAGGAAAAGG-CTCATAAAATCAATACCCCACACGTCAAATATATCACAAACATAA
*
32416975 AAATTATGTAATGGCATTTGATTTCTACTACTTAAGTTGCCAGTTTTTTGA
65 AAATTATGTAATGGCATTTGATTTCGACTACTTAAGTTGCCAGTTTTTTGA
32417026 C
1 C
32417027 ATGATGCACA
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
115 18 0.16
116 95 0.84
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (115 bp):
CGAAAGAAGAAGGAAAAGGCTCATAAAATCAATACCCCACACGTCAAATATATCACAAACATAAA
AATTATGTAATGGCATTTGATTTCGACTACTTAAGTTGCCAGTTTTTTGA
Found at i:32420638 original size:26 final size:26
Alignment explanation
Indices: 32420607--32420693 Score: 95
Period size: 26 Copynumber: 3.3 Consensus size: 26
32420597 CTAATTTCGT
32420607 AACAAAGCTACCAGTAATAGTAACGC
1 AACAAAGCTACCAGTAATAGTAACGC
* * * *
32420633 AGCAAAGCTGCCAGTAACAGTAATGC
1 AACAAAGCTACCAGTAATAGTAACGC
* *
32420659 AACAGAGCTACCAGT-ATCAATAACGC
1 AACAAAGCTACCAGTAAT-AGTAACGC
*
32420685 ATCAAAGCT
1 AACAAAGCT
32420694 GCCAATAACA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (26 bp):
AACAAAGCTACCAGTAATAGTAACGC
Found at i:32420691 original size:52 final size:52
Alignment explanation
Indices: 32420607--32420706 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
32420597 CTAATTTCGT
* *
32420607 AACAAAGCTACCAGTAATAGTAACGCAGCAAAGCTGCCAGTAACAGTAATGC
1 AACAAAGCTACCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAATGC
* *
32420659 AACAGAGCTACCAGT-ATCAATAACGCATCAAAGCTGCCAATAACAGTA
1 AACAAAGCTACCAGTAAT-AATAACGCAGCAAAGCTGCCAATAACAGTA
32420707 TTTGTGGCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.05
52 41 0.95
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (52 bp):
AACAAAGCTACCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAATGC
Found at i:32420944 original size:27 final size:27
Alignment explanation
Indices: 32420911--32421174 Score: 184
Period size: 27 Copynumber: 9.8 Consensus size: 27
32420901 TACACTATAG
*
32420911 GGGTATTTCTGAAATTTTACCCATCAA
1 GGGTATTTCTGAAATTTTACCCATCGA
* * * *
32420938 GGTTATTTC-AATAATTTTAACCATCGG
1 GGGTATTTCTGA-AATTTTACCCATCGA
**
32420965 GGGTATTT-TGGTCATTTTACCCATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* * *
32420992 GGGTATTT-TGGTAGTTTTACCAATC-A
1 GGGTATTTCT-GAAATTTTACCCATCGA
*
32421018 GGGGTATTTC-GATAATTTTACCTATCGA
1 -GGGTATTTCTGA-AATTTTACCCATCGA
*
32421046 GGGTATTT-TGGTAATTTTACCCATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* *
32421073 GAGTATTTC-GATAGTTTTACCCATCGA
1 GGGTATTTCTGA-AATTTTACCCATCGA
* ** *
32421100 GGGTGTTT-TGGTCATTTTACCTATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* * * *
32421127 GGGCAGTTCAGTAATTTTACCCATCGA
1 GGGTATTTCTGAAATTTTACCCATCGA
* *
32421154 GGGTATTTCGGTAATTTTACC
1 GGGTATTTCTGAAATTTTACC
32421175 ATTCGGGGCT
Statistics
Matches: 186, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
26 4 0.02
27 179 0.96
28 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCTGAAATTTTACCCATCGA
Found at i:32421010 original size:54 final size:53
Alignment explanation
Indices: 32420910--32421182 Score: 289
Period size: 54 Copynumber: 5.1 Consensus size: 53
32420900 TTACACTATA
* * ***
32420910 GGGGTATTTCTGA-AATTTTACCCATCAAGGTTATTTCAATAATTTTAACCATCG
1 GGGGTATTTC-GATAATTTTACCCATCGAGGGTATTTTGGTAATTTT-ACCATCG
* * * * *
32420964 GGGGTATTTTGGTCATTTTACCCATCGAGGGTATTTTGGTAGTTTTACCAATCA
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACC-ATCG
*
32421018 GGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGGTAATTTTACCCATCG
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTA-CCATCG
* * * * *
32421072 AGAGTATTTCGATAGTTTTACCCATCGAGGGTGTTTTGGTCATTTTACCTATCG
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACC-ATCG
* * * *
32421126 AGGGCAGTTC-AGTAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCATTCG
1 GGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCA-TCG
32421180 GGG
1 GGG
32421183 CTAATTTAGT
Statistics
Matches: 183, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
53 8 0.04
54 173 0.95
55 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (53 bp):
GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCATCG
Found at i:32421033 original size:81 final size:81
Alignment explanation
Indices: 32420911--32421175 Score: 302
Period size: 81 Copynumber: 3.3 Consensus size: 81
32420901 TACACTATAG
* * * * * * * *
32420911 GGGTATTTCTGAAATTTTACCCATCAAGGTTATTTCAATAATTTTAACC-ATCGGGGGTATTTTG
1 GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTT-ACCTATCGAGGGTATTTTG
*
32420975 GTCATTTTACCCATCGA
65 GTAATTTTACCCATCGA
*
32420992 GGGTATTTTGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
1 GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
32421057 TAATTTTACCCATCGA
66 TAATTTTACCCATCGA
* * * * * * * *
32421073 GAGTATTTCGATAGTTTTACCCATCGAGGGTGT-TTT-GGTCATTTTACCTATCGAGGGCAGTTC
1 GGGTATTTCGGTAGTTTTACCAATC-AGGG-GTATTTCGATAATTTTACCTATCGAGGGTATTTT
*
32421136 AGTAATTTTACCCATCGA
64 GGTAATTTTACCCATCGA
*
32421154 GGGTATTTCGGTAATTTTACCA
1 GGGTATTTCGGTAGTTTTACCA
32421176 TTCGGGGCTA
Statistics
Matches: 157, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.02
81 145 0.92
82 7 0.04
83 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
TAATTTTACCCATCGA
Found at i:32421224 original size:27 final size:27
Alignment explanation
Indices: 32421140--32421250 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
32421130 CAGTTCAGTA
* * * * *
32421140 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGGGGGTAATTCGATC
* * *
32421167 ATTTTACCATTCGGGGCTAATT-TAGT-
1 ATTTTACCCTTCGGGGGTAATTCGA-TC
* *
32421193 TTTTTATCCTTCGGGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
** *
32421220 ATTTTACCCTTTTGGGGTAATTCGGTC
1 ATTTTACCCTTCGGGGGTAATTCGATC
32421247 ATTT
1 ATTT
32421251 GTGGCCCATT
Statistics
Matches: 64, Mismatches: 17, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
26 19 0.30
27 45 0.70
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTAATTCGATC
Found at i:32424016 original size:50 final size:50
Alignment explanation
Indices: 32423900--32424093 Score: 253
Period size: 50 Copynumber: 3.9 Consensus size: 50
32423890 TGATAATAAC
* * ** *
32423900 ATGCCAAAGCCATGTCCCAGACCTGGTCTTACATGGGATGTTCTCATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCG
* * *
32423951 CTGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* *
32424001 ATGCCAATGCCATGTCCTAGACATGGTCTTGCATGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * **
32424051 GTGTCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32424094 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 90 0.73
51 34 0.27
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:32427972 original size:50 final size:50
Alignment explanation
Indices: 32427848--32428090 Score: 317
Period size: 50 Copynumber: 4.8 Consensus size: 50
32427838 GATAATAACA
* ** *
32427848 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** * *
32427899 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
32427949 TGCCTACGCCATGACTCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32427999 TGCCAACGCCATGTCCCAGACATTGTCTTACAT-GGATCCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
*
32428049 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32428091 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 3 0.02
50 126 0.76
51 36 0.22
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32428206 original size:13 final size:13
Alignment explanation
Indices: 32428185--32428215 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32428175 GCTTAGATCA
*
32428185 TCATCAAATAAAT
1 TCATAAAATAAAT
32428198 TCATAAAATAAAT
1 TCATAAAATAAAT
32428211 TCATA
1 TCATA
32428216 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:32428447 original size:30 final size:29
Alignment explanation
Indices: 32428413--32428469 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
32428403 CCTCGACTCT
*
32428413 AACTTTGGCAAAATTATGATTTTGCCCCTA
1 AACTTTGAC-AAATTATGATTTTGCCCCTA
* *
32428443 AACTTTTACAAATTATGCTTTTGCCCC
1 AACTTTGACAAATTATGATTTTGCCCC
32428470 AAAGTTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.39
Consensus pattern (29 bp):
AACTTTGACAAATTATGATTTTGCCCCTA
Found at i:32430021 original size:27 final size:27
Alignment explanation
Indices: 32429980--32430336 Score: 301
Period size: 27 Copynumber: 13.2 Consensus size: 27
32429970 GGCTTGGGCC
* *
32429980 GTAAAATTACCGAAATACTCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
32430007 GTAAAATTATAGAAATACCCCCGGAT-G
1 GTAAAATTATCGAAATACCCTC-GATGG
** * *
32430034 GTAAAATTA-CTGAAATATACTCGACGA
1 GTAAAATTATC-GAAATACCCTCGATGG
* * * *
32430061 GTAAATTTACCGAAATACCCTCGACGA
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
32430088 GTAAATTTACCAAAATACCCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
32430115 GTAAAATTATCGAAATACCCCCAGA-GC
1 GTAAAATTATCGAAATACCCTC-GATGG
* * * *
32430142 GTAAAATAACCGAAATACCCTCCATAG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
32430169 GTAAATTTA-CTGAAATACCCTCGATAG
1 GTAAAATTATC-GAAATACCCTCGATGG
* *
32430196 GTAAAATTATTGAAATACCCTCAATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* ** *
32430223 GTAAATTTATCGAAATACTGTTGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
32430250 GAAAAATTA-CTAAAATACCCCCGATGG
1 GTAAAATTATC-GAAATACCCTCGATGG
*
32430277 GTAAAATTATCGAAATACCCCCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
32430304 GTAAAATTACCGTAATACCCTCGTTAGG
1 GTAAAATTATCGAAATACCCTCGAT-GG
32430332 GTAAA
1 GTAAA
32430337 TGACTGCTAG
Statistics
Matches: 266, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.02
27 247 0.93
28 14 0.05
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGATGG
Found at i:32430118 original size:81 final size:81
Alignment explanation
Indices: 32429980--32430326 Score: 344
Period size: 81 Copynumber: 4.3 Consensus size: 81
32429970 GGCTTGGGCC
* *
32429980 GTAAAATTACCGAAATACTCTCGATGGGTAAAATTA-TAGAAATACCCCCGGAT-GGTAAAATTA
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTA-AAATACCCCC-GATGGGTAAAATTA
** * * *
32430043 -CTGAAATATACTCGACGA
64 TC-GAAATACCCCCGATGG
* * * * *
32430061 GTAAATTTACCGAAATACCCTCGACGAGTAAATTTACCAAAATACCCTCGATGGGTAAAATTATC
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
*
32430126 GAAATACCCCCAGA-GC
66 GAAATACCCCC-GATGG
* * * * * *
32430142 GTAAAATAACCGAAATACCCTCCAT-AGGTAAATTTACTGAAATACCCTCGATAGGTAAAATTAT
1 GTAAAATTACCGAAATACCCTCGATGA-GTAAAATTACTAAAATACCCCCGATGGGTAAAATTAT
* * *
32430206 TGAAATACCCTCAATGG
65 CGAAATACCCCCGATGG
* * ** * * *
32430223 GTAAATTTATCGAAATACTGTTGATGGGAAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
32430288 GAAATACCCCCGATGG
66 GAAATACCCCCGATGG
*
32430304 GTAAAATTACCGTAATACCCTCG
1 GTAAAATTACCGAAATACCCTCG
32430327 TTAGGGTAAA
Statistics
Matches: 215, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
80 5 0.02
81 206 0.96
82 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
GAAATACCCCCGATGG
Found at i:32430321 original size:54 final size:54
Alignment explanation
Indices: 32429980--32430336 Score: 342
Period size: 54 Copynumber: 6.6 Consensus size: 54
32429970 GGCTTGGGCC
* *
32429980 GTAAAATTACCGAAATACTCTCGATGGGTAAAATTATAGAAATACCCCCGGAT-G
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCC-GATGG
* ** * * * * * * *
32430034 GTAAAATTACTGAAATATACTCGACGAGTAAATTTACCGAAATACCCTCGACGA
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* * *
32430088 GTAAATTTACCAAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCAGA-GC
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCC-GATGG
* * * * * *
32430142 GTAAAATAACCGAAATACCCTCCATAGGTAAATTTA-CTGAAATACCCTCGATAG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATC-GAAATACCCCCGATGG
** * * ****
32430196 GTAAAATTATTGAAATACCCTCAATGGGTAAATTTATCGAAATACTGTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* ** *
32430250 GAAAAATTACTAAAATACCCCCGATGGGTAAAATTATCGAAATACCCCCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* *
32430304 GTAAAATTACCGTAATACCCTCGTTAGGGTAAA
1 GTAAAATTACCGAAATACCCTCGAT-GGGTAAA
32430337 TGACTGCTAG
Statistics
Matches: 241, Mismatches: 56, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
53 5 0.02
54 226 0.94
55 10 0.04
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
Found at i:32430493 original size:27 final size:26
Alignment explanation
Indices: 32430463--32430520 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
32430453 GAAGTACTAA
32430463 TACTGGTGGCTCTGCCACA-ACTACTG
1 TACTGGTGGCTCTGCCACATA-TACTG
*
32430489 TTACTGGTGGCTTTGCCACATATACTG
1 -TACTGGTGGCTCTGCCACATATACTG
32430516 TACTG
1 TACTG
32430521 TAGCTTTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 5 0.17
27 23 0.79
28 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (26 bp):
TACTGGTGGCTCTGCCACATATACTG
Found at i:32435980 original size:623 final size:623
Alignment explanation
Indices: 32434794--32436665 Score: 3744
Period size: 623 Copynumber: 3.0 Consensus size: 623
32434784 TGTTCAACAG
32434794 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
1 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
32434859 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
66 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
32434924 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
131 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
32434989 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
196 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
32435054 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
261 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
32435119 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
326 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
32435184 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
391 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
32435249 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
456 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
32435314 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
521 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
32435379 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
586 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
32435417 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
1 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
32435482 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
66 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
32435547 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
131 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
32435612 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
196 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
32435677 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
261 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
32435742 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
326 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
32435807 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
391 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
32435872 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
456 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
32435937 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
521 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
32436002 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
586 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
32436040 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
1 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
32436105 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
66 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
32436170 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
131 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
32436235 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
196 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
32436300 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
261 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
32436365 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
326 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
32436430 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
391 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
32436495 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
456 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
32436560 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
521 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
32436625 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
586 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
32436663 GGT
1 GGT
32436666 GCACAACAAT
Statistics
Matches: 1249, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
623 1249 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (623 bp):
GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
Found at i:32451298 original size:27 final size:27
Alignment explanation
Indices: 32451243--32451351 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 27
32451233 TAGCAGTCAA
* *
32451243 TTTACCCTATTG-GGGTATTTTGGTCAT
1 TTTACCCT-TTGAGGGTATTTCGGTAAT
*
32451270 TTTACCCTTTGAGGGTACTTCGGTAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
* * *
32451297 TTTACTC-TTCAGGGTATTTCGATAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
* * **
32451323 TTTATCCTTTGGGGGTATTTTAGTAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
32451350 TT
1 TT
32451352 AACAACCTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
26 24 0.36
27 42 0.64
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (27 bp):
TTTACCCTTTGAGGGTATTTCGGTAAT
Found at i:32456338 original size:19 final size:19
Alignment explanation
Indices: 32456279--32456338 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
32456269 GTACATTCTC
* *
32456279 TTTTC-TTTACATGTTTAT
1 TTTTCGTTTTCATTTTTAT
* *
32456297 TTCTT-GTTTTCAATTTTAG
1 TT-TTCGTTTTCATTTTTAT
32456316 TTTTCGTTTTCATTTTTAT
1 TTTTCGTTTTCATTTTTAT
32456335 TTTT
1 TTTT
32456339 TTTGTTTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 4 0.12
19 29 0.88
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTCGTTTTCATTTTTAT
Found at i:32457593 original size:18 final size:18
Alignment explanation
Indices: 32457563--32457605 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
32457553 ATTTTAAGTC
*
32457563 ATTTGTTTATTTTTC-TT
1 ATTTATTTATTTTTCGTT
32457580 ATTTATTTATTTTTCGTT
1 ATTTATTTATTTTTCGTT
32457598 ATTTATTT
1 ATTTATTT
32457606 TTATGTCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTATTTATTTTTCGTT
Found at i:32460792 original size:41 final size:41
Alignment explanation
Indices: 32460747--32460824 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
32460737 ACTAATTGCA
* *
32460747 TCGATGCATTGACTTGGGTATCGATACCTCA-GCCAATGGTG
1 TCGATACATTAACTTGGGTATCGATACC-CATGCCAATGGTG
32460788 TCGATACATTAACTTGGGTATCGATACCCATGCCAAT
1 TCGATACATTAACTTGGGTATCGATACCCATGCCAAT
32460825 TATTGATACC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (41 bp):
TCGATACATTAACTTGGGTATCGATACCCATGCCAATGGTG
Found at i:32462514 original size:43 final size:43
Alignment explanation
Indices: 32462466--32462762 Score: 382
Period size: 43 Copynumber: 6.9 Consensus size: 43
32462456 GTTTTTAGAA
*
32462466 AAAAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* *
32462509 AAAAACGCCGCTATAGATCAAGAGCTTTAGCGGCGCTTTTTCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
32462552 ACAAACGCCGCTATAGATCACA-AGCTTTAGCGGTGCTTTTTCC
1 AAAAACGCCGCTATAGATCA-AGACCTTTAGCGGCGCTTTTCCC
* *
32462595 ACAAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
32462638 ACAAACGCTGCTATAGATCAAGACCTTTAGCAGTGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
32462681 AAAAACGTCACTATAGCTCAGGACCTTTAGCGGCGCTTTT-CC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * *
32462723 AACAAACACCGCTATAGCTCAAGACCTTTAGCGACGCTTT
1 AA-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT
32462763 GATTACAAAC
Statistics
Matches: 225, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.02
43 220 0.98
44 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
Found at i:32462870 original size:16 final size:16
Alignment explanation
Indices: 32462851--32462884 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32462841 AAATATTAAA
32462851 TATTAAAATAAAAAAT
1 TATTAAAATAAAAAAT
*
32462867 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
32462883 TA
1 TA
32462885 ATTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:32462882 original size:23 final size:22
Alignment explanation
Indices: 32462839--32462880 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32462829 AAAAACATTT
*
32462839 AAAAATATTAAATATTAAAATA
1 AAAAATATTAAATATAAAAATA
32462861 AAAAATTATT-AATATAAAAA
1 AAAAA-TATTAAATATAAAAA
32462881 ATTAATTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATATTAAATATAAAAATA
Found at i:32464280 original size:40 final size:41
Alignment explanation
Indices: 32464236--32464348 Score: 106
Period size: 40 Copynumber: 2.8 Consensus size: 41
32464226 GCGTTTGGAT
32464236 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGC-ACTTTAG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
* * * * * ** *
32464276 AAAAAACGCCACTAAAGATCCAGTATTAGCGGCGTTTTTTG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
* * *
32464317 -GAAAATGCCGCTAAAAAT-GAGCATTAGTGGCG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCG
32464349 TTTTCCAAAA
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
39 11 0.19
40 42 0.74
41 4 0.07
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (41 bp):
AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
Found at i:32464475 original size:41 final size:41
Alignment explanation
Indices: 32464408--32464684 Score: 324
Period size: 41 Copynumber: 6.8 Consensus size: 41
32464398 GAGTTTTCAA
*
32464408 GGCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* *
32464449 GGCTTTAGCGGTGTTTTTGAAGAAGTGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * * * *
32464490 TGCTTTAGCGACGTTTCTGAAAAGGCGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * * *
32464531 GGCTTTAGCGGCGTTTTTGAAGAAGCGTCGTTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * *
32464572 GGCTTTAGCGGCATTTTTTTAAAAAGTGTCGCTAATGCTC-G
1 GGCTTTAGCGGC-GTTTTTGAAAAAGTGCCGCTAATGCTCTG
** * *
32464613 GGTCTTTAGCGATGTTTTTGAAAAAGCGCCGCTATTGCTCT-
1 GG-CTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
***
32464654 ATTTTTAGCGGCGTTTTTGAAAAAGTGCCGC
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGC
32464685 AAAAATTATT
Statistics
Matches: 198, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
40 25 0.13
41 143 0.72
42 30 0.15
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
Found at i:32464547 original size:82 final size:82
Alignment explanation
Indices: 32464409--32464684 Score: 358
Period size: 82 Copynumber: 3.4 Consensus size: 82
32464399 AGTTTTCAAG
32464409 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
*
32464474 TGCCGCTAATGCTCTGT
66 CGCCGCTAATGCTCTGT
* * * *
32464491 GCTTTAGCGACGTTTCTGAAAAGGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAAGAAG
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
* * *
32464556 CGTCGTTAATGCTCTGG
66 CGCCGCTAATGCTCTGT
* * * * * *
32464573 GCTTTAGCGGCATTTTTTTAAAAAGTGTCGCTAATGCTC-GGGTCTTTAGCGATGTTTTTGAAAA
1 GCTTTAGCGGC-GTTTCTGAAAAAGTGCCGCTAATGCTCTGGG-CTTTAGCGGTGTTTTTGAAGA
* *
32464637 AGCGCCGCTATTGCTCTAT
64 AGCGCCGCTAATGCTCTGT
* *
32464656 -TTTTAGCGGCGTTTTTGAAAAAGTGCCGC
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGC
32464685 AAAAATTATT
Statistics
Matches: 165, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
81 16 0.10
82 96 0.58
83 53 0.32
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.34
Consensus pattern (82 bp):
GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
CGCCGCTAATGCTCTGT
Found at i:32467885 original size:49 final size:49
Alignment explanation
Indices: 32467707--32468213 Score: 860
Period size: 49 Copynumber: 10.6 Consensus size: 49
32467697 TATTTGAATA
32467707 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467754 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467801 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467848 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467897 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467946 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467993 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32468042 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
32468091 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
32468140 AATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATG
*
32468187 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
32468214 TCCCGAAGGG
Statistics
Matches: 445, Mismatches: 7, Indels: 15
0.95 0.01 0.03
Matches are distributed among these distances:
46 2 0.00
47 197 0.44
48 3 0.01
49 243 0.55
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32467964 original size:145 final size:143
Alignment explanation
Indices: 32467707--32468213 Score: 862
Period size: 145 Copynumber: 3.5 Consensus size: 143
32467697 TATTTGAATA
32467707 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
32467770 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
32467835 GGCCGATGTGATG
131 GGCCGATGTGATG
32467848 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32467913 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
32467978 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
32467993 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32468058 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
32468123 TAATGGCCGATGTGATG
127 TAATGGCCGATGTGATG
* * * * * *
32468140 AATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 AATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
32468203 A-ATGTGATAAG
65 ATATGTGATAAG
32468214 TCCCGAAGGG
Statistics
Matches: 353, Mismatches: 6, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
141 12 0.03
143 57 0.16
144 3 0.01
145 234 0.66
147 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:32470409 original size:38 final size:38
Alignment explanation
Indices: 32470345--32470419 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
32470335 AATCCGAGTT
*
32470345 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
32470383 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
32470420 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:32470532 original size:40 final size:40
Alignment explanation
Indices: 32470473--32470654 Score: 285
Period size: 40 Copynumber: 4.6 Consensus size: 40
32470463 AGGTCTCGAC
32470473 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
32470512 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
32470552 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
32470592 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
32470632 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
32470655 CCGGACTAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 4 0.03
40 125 0.97
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:32470723 original size:96 final size:96
Alignment explanation
Indices: 32470559--32470750 Score: 357
Period size: 96 Copynumber: 2.0 Consensus size: 96
32470549 AGTGATGTAT
*
32470559 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
*
32470624 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
*
32470655 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
32470720 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
32470751 AGAGCATTCG
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (96 bp):
CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
GTGCTAGTGATGTATCCGGACTAAGTTCCGA
Found at i:32470768 original size:136 final size:136
Alignment explanation
Indices: 32470532--32470787 Score: 388
Period size: 136 Copynumber: 1.9 Consensus size: 136
32470522 GGCTAAGTCC
* * * *
32470532 CGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
* * *
32470597 ATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGTTGTATCCG-GACTAAGTTCCGACCGGAC
66 ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAGTTCCGACCGGAC
32470661 TAAGTTT
130 TAAGTTT
* * *
32470668 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATGT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
* *
32470733 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
66 ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
32470788 TGAAGAGCAT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
136 106 0.99
137 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (136 bp):
CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCCGACCGGACT
AAGTTT
Found at i:32470795 original size:176 final size:176
Alignment explanation
Indices: 32470492--32470818 Score: 564
Period size: 176 Copynumber: 1.9 Consensus size: 176
32470482 GGCTAAGTCC
* * *
32470492 CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
32470557 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
*
32470622 TCGTGCTAGTGTTGTATCCGGACTAAGTTCCGACCGGACTAAGTTT
131 TCGTGCTAGTGTTATATCCGGACTAAGTTCCGACCGGACTAAGTTT
*
32470668 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
* * * *
32470733 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCTGAAGAGCAT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
*
32470798 TCGTGCTGGTGTTATATCCGG
131 TCGTGCTAGTGTTATATCCGG
32470819 GCTAGGTCCC
Statistics
Matches: 141, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
176 141 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (176 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
TCGTGCTAGTGTTATATCCGGACTAAGTTCCGACCGGACTAAGTTT
Found at i:32470848 original size:40 final size:40
Alignment explanation
Indices: 32470668--32470836 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
32470658 GACTAAGTTT
*
32470668 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* * * *
32470708 CAAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* *
32470748 CGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* * * *
32470788 TGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
32470828 CGAAGAGCA
1 CGAAGAGCA
32470837 ATCATGCTGG
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
Found at i:32481445 original size:15 final size:14
Alignment explanation
Indices: 32481419--32481458 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
32481409 ATTAATTATC
32481419 ATTATAGTTTAGGG
1 ATTATAGTTTAGGG
*
32481433 ATTATAGGTTTAGGT
1 ATTATA-GTTTAGGG
*
32481448 ATTATTGTTTA
1 ATTATAGTTTA
32481459 TGGTTTACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (14 bp):
ATTATAGTTTAGGG
Found at i:32481945 original size:20 final size:21
Alignment explanation
Indices: 32481911--32481950 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32481901 GCCTTGTTTT
32481911 CCCTAAATTTCCCCCCTAAAC
1 CCCTAAATTTCCCCCCTAAAC
*
32481932 CCCT-AATTTTCCCCCTAAA
1 CCCTAAATTTCCCCCCTAAA
32481951 ATTGGTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (21 bp):
CCCTAAATTTCCCCCCTAAAC
Found at i:32482084 original size:24 final size:24
Alignment explanation
Indices: 32482057--32482105 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32482047 TCTCAACCAC
32482057 CGTCTTTGTTTTTCTCTCATTTAT
1 CGTCTTTGTTTTTCTCTCATTTAT
32482081 CGTCTTTGTTTTTCTCTCATTTAT
1 CGTCTTTGTTTTTCTCTCATTTAT
32482105 C
1 C
32482106 CGGTCGGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.08, T:0.61
Consensus pattern (24 bp):
CGTCTTTGTTTTTCTCTCATTTAT
Found at i:32486163 original size:35 final size:34
Alignment explanation
Indices: 32486112--32486177 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
32486102 TAATTGTGTT
32486112 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATT-TAAATTTAAATTC
* *
32486147 ATTAATTT-TTATTTTTATATTTAGATTTAAA
1 ATTAATTTATTA-TTTTAAATTTAAATTTAAA
32486178 GTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 12 0.43
35 16 0.57
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (34 bp):
ATTAATTTATTATTTTAAATTTAAATTTAAATTC
Found at i:32486292 original size:17 final size:17
Alignment explanation
Indices: 32486260--32486303 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
32486250 TCATAGAAAT
*
32486260 AAATATTATTTGAAAAA
1 AAATATTTTTTGAAAAA
* *
32486277 AAATATTTTTTTAAAAG
1 AAATATTTTTTGAAAAA
*
32486294 ATATATTTTT
1 AAATATTTTT
32486304 AGCGGCGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (17 bp):
AAATATTTTTTGAAAAA
Found at i:32486406 original size:43 final size:43
Alignment explanation
Indices: 32486301--32486432 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
32486291 AAGATATATT
**
32486301 TTTAGCGGCGTTTGTATGAAAAGCGCCGTTAAAGGTCTAT--TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTC-ATGGTC
* *
32486343 TATAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
* * *
32486386 TTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
32486429 TTTA
1 TTTA
32486433 ATGGTGTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 33 0.42
43 44 0.56
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
Found at i:32489127 original size:22 final size:24
Alignment explanation
Indices: 32489090--32489133 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
32489080 AATAACTTAG
32489090 GGAAATTTAGGGGAAACGAAGTTA
1 GGAAATTTAGGGGAAACGAAGTTA
*
32489114 GGAAA-TT-GGGGAAATGAAGT
1 GGAAATTTAGGGGAAACGAAGT
32489134 CGGGGAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.41, C:0.02, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAAATTTAGGGGAAACGAAGTTA
Found at i:32490016 original size:21 final size:21
Alignment explanation
Indices: 32489948--32490023 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
32489938 AACCTTAAAT
* * *
32489948 CACTAACTCTTAACCTCTAAC
1 CACTAACCCCTAACCCCTAAC
*
32489969 CCCTAACCCCTAACCCCTAAC
1 CACTAACCCCTAACCCCTAAC
*
32489990 CCCTAACCCCTAACCCCTAAC
1 CACTAACCCCTAACCCCTAAC
* *
32490011 TACTAAGCCCTAA
1 CACTAACCCCTAA
32490024 ACCTTATTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.32, C:0.47, G:0.01, T:0.20
Consensus pattern (21 bp):
CACTAACCCCTAACCCCTAAC
Found at i:32490023 original size:7 final size:7
Alignment explanation
Indices: 32489958--32490010 Score: 97
Period size: 7 Copynumber: 7.6 Consensus size: 7
32489948 CACTAACTCT
*
32489958 TAACCTC
1 TAACCCC
32489965 TAACCCC
1 TAACCCC
32489972 TAACCCC
1 TAACCCC
32489979 TAACCCC
1 TAACCCC
32489986 TAACCCC
1 TAACCCC
32489993 TAACCCC
1 TAACCCC
32490000 TAACCCC
1 TAACCCC
32490007 TAAC
1 TAAC
32490011 TACTAAGCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17
Consensus pattern (7 bp):
TAACCCC
Found at i:32490145 original size:66 final size:69
Alignment explanation
Indices: 32489999--32490147 Score: 207
Period size: 66 Copynumber: 2.2 Consensus size: 69
32489989 CCCCTAACCC
* * *
32489999 CTAACCCCTAACTACTAAGCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCT
1 CTAAACCCTAAC-CCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCT
32490064 AAACG
65 AAACG
* *
32490069 CTAAAACCTAACCCTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACA-ACTAATTAATCTA
1 CTAAACCCTAACCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTA
32490131 AAC-
66 AACG
32490134 CTTAAACCCTAACC
1 C-TAAACCCTAACC
32490148 TGACATTGAA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
65 1 0.01
66 27 0.38
67 14 0.19
68 1 0.01
69 19 0.26
70 10 0.14
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (69 bp):
CTAAACCCTAACCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTA
AACG
Found at i:32490760 original size:81 final size:80
Alignment explanation
Indices: 32490655--32490849 Score: 246
Period size: 81 Copynumber: 2.4 Consensus size: 80
32490645 AATTTTTTTT
**
32490655 GCGGCACCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAACAACGAGTATTGGAAAACGCCGC
1 GCGGCA-CTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAACAACGAGTATTCAAAAACGCCGC
* *
32490720 TAAAGCTCTGAGCATTA
64 TAAAGCCCCGAGCATTA
* * * ** *
32490737 GCGGCACTTTTTAAAAACGCCGCTAAATGCCCGAGCATTAGCGACGCTTTTTCAAAAACGCCGCT
1 GCGGCACTTTTCAAAAACGCCGCTAAA-GCCCGAGCATTAACAACGAGTATTCAAAAACGCCGCT
*
32490802 TAAGCCCCGAGCATTA
65 AAAGCCCCGAGCATTA
*
32490818 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCC
1 GCGGCACTTTT-CAAAAACGCCGCTAAAGCCC
32490850 CAAAAGATCA
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
81 73 0.74
82 25 0.26
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (80 bp):
GCGGCACTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAACAACGAGTATTCAAAAACGCCGCTA
AAGCCCCGAGCATTA
Found at i:32490811 original size:41 final size:41
Alignment explanation
Indices: 32490663--32490850 Score: 218
Period size: 41 Copynumber: 4.6 Consensus size: 41
32490653 TTGCGGCACC
* * * **
32490663 TTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAACAACGAG
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
* ** * * * *
32490704 TATTGGAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCACT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
32490745 TTTT-AAAAACGCCGCTAAATG-CCCGAGCATTAGCGACGCT
1 TTTTCAAAAACGCCGCTAAA-GCCCCGAGCATTAGCGACGCT
* *
32490785 TTTTCAAAAACGCCGCTTAAGCCCCGAGCATTAGCGGCGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
*
32490826 TTTCCAAAAACGCCGCTAAAGCCCC
1 TTTTCAAAAACGCCGCTAAAGCCCC
32490851 AAAAGATCAG
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 34 0.27
41 90 0.73
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (41 bp):
TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
Found at i:32502716 original size:12 final size:12
Alignment explanation
Indices: 32502696--32502737 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
32502686 TTAGGCTGTT
*
32502696 ACACAGCCTAGC
1 ACACGGCCTAGC
32502708 ACACGGCCTAGC
1 ACACGGCCTAGC
*
32502720 ACATGGCCTAGC
1 ACACGGCCTAGC
32502732 ACACGG
1 ACACGG
32502738 GCGTGTGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:32506827 original size:109 final size:110
Alignment explanation
Indices: 32506636--32506887 Score: 319
Period size: 109 Copynumber: 2.3 Consensus size: 110
32506626 CTAGAGACAA
* * * *
32506636 TAAAAAAAATTTTGGTGCTAGCCA-GTAGATGGCCGGCACCAGGTACAATTTTCAGTTCCCAAGG
1 TAAAAAAAA-TTGGGTGCTGGCCATGTA-ATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGG
* * * *
32506700 CACATTTTTTTTACTTTGGGACACTGATGGCCGGCACTAGTGTA-TT
64 CACATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
* * *
32506746 TAAAAAAAATTGGGTGTTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGGTTCCCAATGCA
1 TAAAAAAAATTGGGTGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGGCA
* * * *
32506811 TATTATTATTATTTTGGAACACTGATGGTCGGTACCAGTGTATTT
66 CATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
*
32506856 TAAAAAAATTTTGGGTGCTGGCCATGTAATGG
1 TAAAAAAA-ATTGGGTGCTGGCCATGTAATGG
32506888 TAGGCACCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
109 79 0.65
110 22 0.18
111 21 0.17
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (110 bp):
TAAAAAAAATTGGGTGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGGCA
CATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
Found at i:32506938 original size:111 final size:109
Alignment explanation
Indices: 32506636--32506958 Score: 310
Period size: 109 Copynumber: 2.9 Consensus size: 109
32506626 CTAGAGACAA
* * * * ** * *
32506636 TAAAAAAAATTTTGGTGCTAGCCA-GTAGATGGCCGGCACCAGGTACAATTTTCAG-TTCCCAAG
1 TAAAAAAAA-TTGGGTGCTGGCCATGTA-ATGGCAGACACCAAATACAATTTTC-GCCTCCCAAT
* *
32506699 GCACATTTTTTTTACTTTGGGACACTGATGGCCGGCACTAGTGTATT
63 GCATATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTATT
* * * **
32506746 TAAAAAAAATTGGGTGTTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGGTTCCCAATGCA
1 TAAAAAAAATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGCA
* * * * * *
32506811 TATTATTATTATTTTGGAACACTGATGGTCGGTACCAGTGTATTT
66 TATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTA-TT
* * * * * *
32506856 TAAAAAAATTTTGGGTGCTGGCCATGTAATGGTAGGCACCAAATACAGTTTTTGCCTCCCAATGT
1 TAAAAAAA-ATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGC
* *
32506921 A-AGTTTTTTTTACTTTGGGACATTGATGGCTGGCACCA
65 ATA-TTTTTTTTACTTTGGGACACTGATGGCCGGCACCA
32506959 CCTTTTTCGG
Statistics
Matches: 175, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
108 1 0.01
109 78 0.45
110 23 0.13
111 73 0.42
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (109 bp):
TAAAAAAAATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGCA
TATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTATT
Found at i:32510230 original size:15 final size:15
Alignment explanation
Indices: 32510212--32510243 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32510202 GTAAAAGCTG
32510212 AAAACAATTAAATAA
1 AAAACAATTAAATAA
*
32510227 AAAACAGTTAAATAA
1 AAAACAATTAAATAA
32510242 AA
1 AA
32510244 CAGAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAACAATTAAATAA
Found at i:32512327 original size:6 final size:6
Alignment explanation
Indices: 32512295--32512340 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
32512285 GTCTACATGC
32512295 AAAAT- AAAAT- AAAATA GAAGGAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA -AA--AATA AAAATA AAAATA AAAATA AAA
32512341 TGTGTAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.27
6 19 0.51
7 2 0.05
8 2 0.05
9 4 0.11
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:32521395 original size:6 final size:6
Alignment explanation
Indices: 32521374--32521458 Score: 99
Period size: 6 Copynumber: 14.8 Consensus size: 6
32521364 CTTTTTTTTT
*
32521374 CATTT- CATTT- CATTTC CATTTC CATTTC TAATTT- CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC -CATTTC CATTTC CATTTC
**
32521420 CATTTC CATTTC CATTT- CATTAA CATTTC CATTT- CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
32521459 AAATTATATT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
5 23 0.32
6 44 0.62
7 4 0.06
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:32521407 original size:29 final size:28
Alignment explanation
Indices: 32521371--32521478 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 28
32521361 CAACTTTTTT
32521371 TTTC-ATTTCATTTCATTTCCATTTCCA
1 TTTCAATTTCATTTCATTTCCATTTCCA
32521398 TTTCTAATTTCATTTCCATTTCCATTTCCA
1 TTTC-AATTTCATTT-CATTTCCATTTCCA
* *
32521428 TTTCCATTTCATTAACATTTCCATTT-CA
1 TTTCAATTTCATT-TCATTTCCATTTCCA
*
32521456 TTTAAATTAT-ATTT--TTTCCATTT
1 TTTCAATT-TCATTTCATTTCCATTT
32521479 AAATTTAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
25 9 0.13
27 4 0.06
28 11 0.15
29 29 0.41
30 18 0.25
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTCAATTTCATTTCATTTCCATTTCCA
Found at i:32521409 original size:24 final size:23
Alignment explanation
Indices: 32521374--32521458 Score: 111
Period size: 24 Copynumber: 3.7 Consensus size: 23
32521364 CTTTTTTTTT
32521374 CATTT-CATTTCATTTCCATTTC
1 CATTTCCATTTCATTTCCATTTC
*
32521396 CATTTCTAATTTCATTTCCATTTC
1 CATTTC-CATTTCATTTCCATTTC
**
32521420 CATTTCCATTTCCATTT-CATTAA
1 CATTTCCATTT-CATTTCCATTTC
32521443 CATTTCCATTTCATTT
1 CATTTCCATTTCATTT
32521459 AAATTATATT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
22 10 0.18
23 19 0.34
24 27 0.48
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (23 bp):
CATTTCCATTTCATTTCCATTTC
Found at i:32521493 original size:20 final size:20
Alignment explanation
Indices: 32521450--32521525 Score: 57
Period size: 20 Copynumber: 3.6 Consensus size: 20
32521440 TAACATTTCC
32521450 ATTT-CATTTAAA-TTATATT
1 ATTTCCATTTAAATTTA-ATT
*
32521469 TTTTCCATTTAAATTTAATT
1 ATTTCCATTTAAATTTAATT
* *
32521489 ATTTCTCATCTCAATTTTTAATTT
1 ATTTC-CAT-TTAA-ATTTAA-TT
*
32521513 ATTTTCATTTAAA
1 ATTTCCATTTAAA
32521526 CTTTTATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
19 3 0.07
20 15 0.34
21 6 0.14
22 6 0.14
23 8 0.18
24 6 0.14
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTCCATTTAAATTTAATT
Found at i:32521530 original size:23 final size:21
Alignment explanation
Indices: 32521451--32521539 Score: 74
Period size: 23 Copynumber: 4.1 Consensus size: 21
32521441 AACATTTCCA
*
32521451 TTTCATTTAAATTATATTT-T
1 TTTCATTTAAATTTTATTTAT
* *
32521471 TTCCATTTAAA-TTTAATTAT
1 TTTCATTTAAATTTTATTTAT
* *
32521491 TTCTCATCTCAATTTTTAATTTAT
1 TT-TCAT-TTAAATTTT-ATTTAT
32521515 TTTCATTTAAACTTTTATTTCAT
1 TTTCATTTAAA-TTTTATTT-AT
32521538 TT
1 TT
32521540 CATAATCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
19 5 0.09
20 13 0.25
21 3 0.06
22 10 0.19
23 15 0.28
24 7 0.13
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTCATTTAAATTTTATTTAT
Found at i:32521555 original size:19 final size:19
Alignment explanation
Indices: 32521531--32521567 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32521521 TTAAACTTTT
32521531 ATTTCATTTCATAATCATC
1 ATTTCATTTCATAATCATC
*
32521550 ATTTCATTTCATATTCAT
1 ATTTCATTTCATAATCAT
32521568 TCAACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTCATTTCATAATCATC
Found at i:32521600 original size:14 final size:13
Alignment explanation
Indices: 32521573--32521597 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32521563 TTCATTCAAC
32521573 ATTTTTTTCATTA
1 ATTTTTTTCATTA
32521586 ATTTTTTTCATT
1 ATTTTTTTCATT
32521598 TAAATTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTTTCATTA
Found at i:32521787 original size:21 final size:21
Alignment explanation
Indices: 32521745--32521787 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32521735 TATCAGGGTC
*
32521745 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
32521766 ATTTAAAATTTTTC-TCAATTT
1 ATTTAAAATTTTTCAT-AATTT
32521787 A
1 A
32521788 AATATCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:32522042 original size:27 final size:26
Alignment explanation
Indices: 32522012--32522284 Score: 106
Period size: 27 Copynumber: 10.9 Consensus size: 26
32522002 AGTTCGTTTC
32522012 AATTATCTTTTTTTTCCATTTAAATTT
1 AATTAT-TTTTTTTTCCATTTAAATTT
* *
32522039 -A--ATTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
* * * *
32522060 ATATTATCTTTCTTCCCATATAAATTT
1 A-ATTATTTTTTTTTCCATTTAAATTT
* *
32522087 AATT-TTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
*
32522110 AAATTA-TTTTTTTTCTATTTAAA--T
1 -AATTATTTTTTTTTCCATTTAAATTT
* *
32522134 -ATTA-TTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
*
32522156 AAATTATTTTTTATTCCATTTAAATTT
1 -AATTATTTTTTTTTCCATTTAAATTT
* *
32522183 -A--ATTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
* * *
32522204 AAATTATCTTTCTTTCCATTTTAATTTT
1 -AATTATTTTTTTTTCCA-TTTAAATTT
*
32522232 AATT-TTTTTCTCATTT-CATTTAGATTT
1 AATTATTTTT-T--TTTCCATTTAAATTT
*
32522259 AATT-TTTCTTCTCTTTTCATTTAAAT
1 AATTATTT-TT-T-TTTCCATTTAAAT
32522285 GATCTTTCTT
Statistics
Matches: 180, Mismatches: 37, Indels: 57
0.66 0.14 0.21
Matches are distributed among these distances:
20 1 0.01
21 12 0.07
22 22 0.12
23 21 0.12
24 22 0.12
25 29 0.16
26 20 0.11
27 33 0.18
28 17 0.09
29 3 0.02
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTATTTTTTTTTCCATTTAAATTT
Found at i:32522088 original size:48 final size:48
Alignment explanation
Indices: 32522012--32522253 Score: 339
Period size: 49 Copynumber: 5.0 Consensus size: 48
32522002 AGTTCGTTTC
32522012 AATTATCTTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
1 AATTATC-TTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
* * * *
32522061 TATTATCTTTCTTCCCATATAAATTTAATTTTTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCATTTAAATTTAA--TTTTTTTCTCATTTCATTTA
*
32522111 AATTAT-TTTTTTTCTATTTAAATATT-A-TTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCATTTAAAT-TTAATTTTTTTCTCATTTCATTTA
32522157 AATTAT-TTTTTATTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
1 AATTATCTTTTT-TTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
* *
32522205 AATTATCTTTCTTTCCATTTTAATTTTAATTTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCA-TTTAAATTTAATTTTTTTCTCATTTCATTTA
32522254 GATTTAATTT
Statistics
Matches: 173, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
46 32 0.18
47 12 0.07
48 48 0.28
49 54 0.31
50 27 0.16
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (48 bp):
AATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
Found at i:32522136 original size:19 final size:21
Alignment explanation
Indices: 32522102--32522150 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
32522092 TTTTTTCTCA
32522102 TTTC-ATTTAAATTATT-TTT
1 TTTCTATTTAAATTATTATTT
32522121 TTTCTATTTAAA-TATTATTT
1 TTTCTATTTAAATTATTATTT
32522141 TTTCTCATTT
1 TTTCT-ATTT
32522151 CATTTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.30
20 15 0.56
21 4 0.15
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTCTATTTAAATTATTATTT
Found at i:32522162 original size:96 final size:95
Alignment explanation
Indices: 32522019--32522253 Score: 332
Period size: 96 Copynumber: 2.4 Consensus size: 95
32522009 TTCAATTATC
*
32522019 TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTATATTATCTTTCT-TCCCATATAA
1 TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTAT-TTTCTATCCCATATAA
32522083 ATTTAATTTTTTTTTCTCATTTCATTTAAATTA
65 ATTTAA--TTTTTTTCTCATTTCATTTAAATTA
* * * *
32522116 TTTTTTTTCTATTTAAATATT-A-TTTTTTCTCATTTCATTTAAATTATTTTTTATTCCATTTAA
1 TTTTTTTTCCATTTAAAT-TTAATTTTTTTCTCATTTCATTTAAATTATTTTCTATCCCATATAA
32522179 ATTTAATTTTTTTCTCATTTCATTTAAATTA
65 ATTTAATTTTTTTCTCATTTCATTTAAATTA
* *
32522210 TCTTTCTTTCCATTTTAATTTTAATTTTTTTCTCATTTCATTTA
1 T-TTTTTTTCCA-TTTAAATTTAATTTTTTTCTCATTTCATTTA
32522254 GATTTAATTT
Statistics
Matches: 124, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
94 26 0.21
95 14 0.11
96 45 0.36
97 37 0.30
98 2 0.02
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (95 bp):
TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATTTTCTATCCCATATAAA
TTTAATTTTTTTCTCATTTCATTTAAATTA
Found at i:32522241 original size:22 final size:22
Alignment explanation
Indices: 32522020--32522252 Score: 112
Period size: 24 Copynumber: 9.9 Consensus size: 22
32522010 TCAATTATCT
*
32522020 TTTTTTTC-CATTTAAATTTAA
1 TTTTTTTCTCATTTAATTTTAA
*
32522041 TTTTTTTCTCATTTCATTTATATTA
1 TTTTTTTCTCATTTAATTT-TA--A
* * * *
32522066 TCTTTCTTCCCATATAAATTTAA
1 T-TTTTTTCTCATTTAATTTTAA
* *
32522089 TTTTTTTTTCTCATTTCATTTAAA
1 --TTTTTTTCTCATTTAATTTTAA
* *
32522113 TTATTTTTTTTCTATTTAAATATT-A
1 -T-TTTTTTCTC-ATTT-AATTTTAA
* *
32522138 -TTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTAATTTTAA
* *
32522159 TTATTTTTTATTCCATTTAAATTTAA
1 -T-TTTTTT-CT-CATTTAATTTTAA
* *
32522185 TTTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTAATTTTAA
*
32522207 TTATCTTTCTTTCCATTTTAATTTTAA
1 TT-T-TTT-TCT-CA-TTTAATTTTAA
*
32522234 TTTTTTTCTCATTTCATTT
1 TTTTTTTCTCATTTAATTT
32522253 AGATTTAATT
Statistics
Matches: 157, Mismatches: 34, Indels: 41
0.68 0.15 0.18
Matches are distributed among these distances:
20 3 0.02
21 13 0.08
22 35 0.22
23 9 0.06
24 40 0.25
25 17 0.11
26 29 0.18
27 11 0.07
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTTTCTCATTTAATTTTAA
Found at i:32522316 original size:77 final size:75
Alignment explanation
Indices: 32522028--32522308 Score: 316
Period size: 77 Copynumber: 3.8 Consensus size: 75
32522018 CTTTTTTTTC
* * * *
32522028 CATTTAAATTTAATTTTTTTCTCATTTCATTTATATTATCTTTCTTCCCATATAAATTTAATTTT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAA--TT
32522093 TTTTTCTCATTT
64 TTTTTCTCATTT
* *
32522105 CATTTAAA-TT-ATTTTTTT-TC---T-ATTTAAA-TAT-TATTTTTTCTCA-TTTCATTTAAAT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCT-TTCTTTC-CATTTTAATTT-AAT
*
32522160 TATTTTT-T-ATTC
63 T-TTTTTCTCATTT
32522172 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTTAATTT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAA-TTTAATTT
32522237 TTTTCTCATTT
65 TTTTCTCATTT
* * *
32522248 CATTTAGATTTAATTTTTCTTCTCTTTTCATTTAAATGATCTTTCTTTCCATTTTAATTTA
1 CATTTAAATTTAATTTTT-TTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTA
32522309 CGTTTTTTAC
Statistics
Matches: 173, Mismatches: 13, Indels: 37
0.78 0.06 0.17
Matches are distributed among these distances:
67 11 0.06
68 6 0.03
69 26 0.15
70 12 0.07
71 1 0.01
73 1 0.01
74 16 0.09
75 26 0.15
76 30 0.17
77 44 0.25
ACGTcount: A:0.25, C:0.13, G:0.01, T:0.62
Consensus pattern (75 bp):
CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTT
TTTCTCATTT
Found at i:32525826 original size:113 final size:110
Alignment explanation
Indices: 32525656--32525865 Score: 271
Period size: 113 Copynumber: 1.9 Consensus size: 110
32525646 ACATGGCCCA
* *
32525656 CACCCAAATTTTTTTTAAATACACTGGTGCCGGCCATCAGTGTTCCAAAATATAAAAAA-GATAC
1 CACCCAAATTTTTTTTAAATACACTGGTACCGGCCATCAGTGTTCCAAAATAAAAAAAATG-TAC
* * *
32525720 ATTGGGAGCCGAAAATTGTACTTGGTGCTGGCCATAACATGACCAG
65 ATTGGGAACCGAAAATTGTACCTGGTGCCGGCCATAACATGACCAG
* *
32525766 CACCCAAAATTTTTTTTTAAAATACACTGGTACCGGCCATCAGTG-TCACACAGTAAAAAAAATG
1 CACCC-AAA-TTTTTTTT-AAATACACTGGTACCGGCCATCAGTGTTC-CAAAATAAAAAAAATG
* * *
32525830 TGCCTTGGGAACTGAAAATTGTACCTGGTGCCGGCC
62 TACATTGGGAACCGAAAATTGTACCTGGTGCCGGCC
32525866 GTCTACTGGC
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
110 5 0.06
111 3 0.04
112 10 0.12
113 66 0.78
114 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (110 bp):
CACCCAAATTTTTTTTAAATACACTGGTACCGGCCATCAGTGTTCCAAAATAAAAAAAATGTACA
TTGGGAACCGAAAATTGTACCTGGTGCCGGCCATAACATGACCAG
Found at i:32527664 original size:41 final size:41
Alignment explanation
Indices: 32527593--32527913 Score: 418
Period size: 41 Copynumber: 7.9 Consensus size: 41
32527583 CTTTTATTTT
*
32527593 TCAGGGCTTTAGCGGCGTTTTTCGAA-AAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGC
* *
32527634 TCGGGTCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* *
32527675 TAAGGTCTTTAGCGGCGTTTTTGAAGAAGTGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* * *
32527716 TCGGGTCTTTAGCGGCATTTTTGGAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* * *
32527757 TCAGGTCTTTAGCTGCGTTTTTGGAGAAGCGCCGCTAGTGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
*
32527798 TCTGGTCTTTAGCGGCGTTTCTT-AAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTT-TTGAAGAAGCGCCGCTAATGC
* *
32527839 TCTGGTCTTTAGCGGCGTTTTTGATA-AAGCGCTGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGA-AGAAGCGCCGCTAATGC
* * *
32527880 TCTA--TTTTTAGCGGCGTTTTTTAAAAAGCGCCGC
1 TC-AGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
32527914 AAAAAATATT
Statistics
Matches: 249, Mismatches: 25, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
39 1 0.00
40 29 0.12
41 216 0.87
42 3 0.01
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.32
Consensus pattern (41 bp):
TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
Found at i:32528754 original size:22 final size:22
Alignment explanation
Indices: 32528729--32528803 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 22
32528719 GAGTTACTGT
32528729 TTTAAGGTTTATGGAGTATGGA
1 TTTAAGGTTTATGGAGTATGGA
* * *
32528751 TTTAAGGATTATGGATTAGGGA
1 TTTAAGGTTTATGGAGTATGGA
* *
32528773 -TTATGGTTTAAGG-GT-TGAGA
1 TTTAAGGTTTATGGAGTATG-GA
32528793 TTTAAGGTTTA
1 TTTAAGGTTTA
32528804 GGGGTTAGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 19 0.45
22 19 0.45
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (22 bp):
TTTAAGGTTTATGGAGTATGGA
Found at i:32528775 original size:14 final size:15
Alignment explanation
Indices: 32528745--32528785 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
32528735 GTTTATGGAG
32528745 TATGGATTTAAGGAT
1 TATGGATTTAAGGAT
*
32528760 TATGGA-TTAGGGAT
1 TATGGATTTAAGGAT
32528774 TATGG-TTTAAGG
1 TATGGATTTAAGG
32528786 GTTGAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (15 bp):
TATGGATTTAAGGAT
Found at i:32528824 original size:22 final size:22
Alignment explanation
Indices: 32528798--32528860 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
32528788 TGAGATTTAA
*
32528798 GGTTTAGGGGTT-AGTGGTTAGG
1 GGTTTAGGGGTTAAG-AGTTAGG
32528820 GGTTTAGGGGTTAAGAGTTAGG
1 GGTTTAGGGGTTAAGAGTTAGG
* * *
32528842 GATTTAGGGTTTATGAGTT
1 GGTTTAGGGGTTAAGAGTT
32528861 CATGGGTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 34 0.94
23 2 0.06
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (22 bp):
GGTTTAGGGGTTAAGAGTTAGG
Found at i:32528912 original size:12 final size:12
Alignment explanation
Indices: 32528891--32528933 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
32528881 TGGGTTTAGA
32528891 TTAA-TTATTTT
1 TTAATTTATTTT
32528902 TTAATTTATTTT
1 TTAATTTATTTT
* *
32528914 TAAATAT-TTTT
1 TTAATTTATTTT
32528925 TTAATTTAT
1 TTAATTTAT
32528934 ATATTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTAATTTATTTT
Found at i:32528928 original size:23 final size:24
Alignment explanation
Indices: 32528890--32528943 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
32528880 TTGGGTTTAG
*
32528890 ATTAATTA-TTTTTTAATTTAT-T
1 ATTAAATATTTTTTTAATTTATAT
*
32528912 TTTAAATATTTTTTTAATTTATAT
1 ATTAAATATTTTTTTAATTTATAT
32528936 ATTAAATA
1 ATTAAATA
32528944 ATTTCATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 6 0.22
23 13 0.48
24 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTAAATATTTTTTTAATTTATAT
Found at i:32529143 original size:21 final size:20
Alignment explanation
Indices: 32529109--32529149 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
32529099 TATAGATTTA
*
32529109 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
32529129 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
32529150 AGGAGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:32529169 original size:21 final size:20
Alignment explanation
Indices: 32529123--32529170 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
32529113 TTATGGTTTA
* * *
32529123 AGGGTTGGGATTTAAGGTTT
1 AGGGTTAGGAGTTAAGATTT
32529143 AGGGGTTAGGAGTTAGAGATTT
1 A-GGGTTAGGAGTTA-AGATTT
32529165 AGGGTT
1 AGGGTT
32529171 TTAAGGGTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (20 bp):
AGGGTTAGGAGTTAAGATTT
Found at i:32529937 original size:22 final size:22
Alignment explanation
Indices: 32529894--32529937 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32529884 CCCATTTTAG
*
32529894 CCCTAAATTTCCCCCGTGAAAC
1 CCCTAAATTTCCCCCGTAAAAC
*
32529916 CCCTAATTTTCCCTCC-TAAAAC
1 CCCTAAATTTCCC-CCGTAAAAC
32529938 TCTTTTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.27, C:0.41, G:0.05, T:0.27
Consensus pattern (22 bp):
CCCTAAATTTCCCCCGTAAAAC
Found at i:32530148 original size:9 final size:9
Alignment explanation
Indices: 32530134--32530159 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32530124 TTTCACAAAC
32530134 AGGTTACAG
1 AGGTTACAG
32530143 AGGTTACAG
1 AGGTTACAG
32530152 AGGTTACA
1 AGGTTACA
32530160 ACCATTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.23
Consensus pattern (9 bp):
AGGTTACAG
Found at i:32530288 original size:20 final size:19
Alignment explanation
Indices: 32530247--32530292 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32530237 CACACTTATC
*
32530247 TTTTTTTTATAGTAATTGA
1 TTTTTTTTATAGTAATTAA
**
32530266 TTTTTTTTATAGATTTTTAA
1 TTTTTTTTATAG-TAATTAA
32530286 TTTTTTT
1 TTTTTTT
32530293 AAATAGAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTTATAGTAATTAA
Found at i:32531831 original size:43 final size:43
Alignment explanation
Indices: 32531792--32531979 Score: 277
Period size: 43 Copynumber: 4.4 Consensus size: 43
32531782 CATTTGTTTG
* * * *
32531792 AAAAGCGCCGTTAAAAGCCATGGTCTTTAGCGGTGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
* * *
32531835 AAAAGTGCCACTAAAGGTCATGGTTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
*
32531878 AAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
* * *
32531921 AAAAGCGCCGCTAAAGGTCTTGGTTTTTAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
32531964 AAAAGCGCCGCTAAAG
1 AAAAGCGCCGCTAAAG
32531980 TTAGCGACGC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 132 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
Found at i:32534320 original size:26 final size:26
Alignment explanation
Indices: 32534291--32534354 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
32534281 CGACTTATAA
32534291 CTCGTGTGAGCAGACCCATTTCACAG
1 CTCGTGTGAGCAGACCCATTTCACAG
*
32534317 CTCGTGTGAGCAGGCCCATTTCACAG
1 CTCGTGTGAGCAGACCCATTTCACAG
32534343 CTCGTGTGAGCA
1 CTCGTGTGAGCA
32534355 TTGATGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAG
Found at i:32537396 original size:14 final size:14
Alignment explanation
Indices: 32537377--32537405 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32537367 TTAGCCCAAT
32537377 ATTATCTTTAAAAA
1 ATTATCTTTAAAAA
32537391 ATTATCTTTAAAAA
1 ATTATCTTTAAAAA
32537405 A
1 A
32537406 CCCTATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTATCTTTAAAAA
Found at i:32540808 original size:83 final size:83
Alignment explanation
Indices: 32540545--32540809 Score: 338
Period size: 83 Copynumber: 3.2 Consensus size: 83
32540535 GATTTGTAGA
* * * * * * *
32540545 GATGCCAAATCATCTTGA-TCTATTTGAGAAC-TGTTGAGAATCATATCTGCTATGTCCTTGTTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACAT-TTGAGAGTCATATCTGCAATGTCCTCGTTT
32540608 TTTCCCTTGTAAGCACAAG
65 TTTCCCTTGTAAGCACAAG
** * *
32540627 GATGCCAAACCATCTCAAGTTTGTTTTAGCACATTTGAGAGTCATATCTGCAATGTCCTCGTTTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGTTTT
*
32540692 TTCCCTTGTAAGCCCAAG
66 TTCCCTTGTAAGCACAAG
32540710 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCG-TTT
* *
32540775 GTT-CCTTGTAAACACAAG
65 TTTCCCTTGTAAGCACAAG
* * *
32540793 AATACCAAATCATCTTG
1 GATGCCAAACCATCTTG
32540810 GATCTACTTC
Statistics
Matches: 159, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
82 15 0.09
83 138 0.87
84 6 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (83 bp):
GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGTTTT
TTCCCTTGTAAGCACAAG
Found at i:32540954 original size:119 final size:119
Alignment explanation
Indices: 32540743--32541047 Score: 432
Period size: 119 Copynumber: 2.6 Consensus size: 119
32540733 TTTAAGAACA
* *
32540743 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
1 TTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCT
* * * * *
32540808 TGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGTTACATTTGAAAACT
66 TGGATCTACTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAAAACG
*
32540862 TTTGAGAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCT
1 TTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCT
* * *
32540927 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACG
66 TGGATCTACTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAAAACG
* * * * * * *
32540981 TTTGAGAATTAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGG-ATGCCAAACCATC
1 TTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACAC-AGGAATACCAAATCATC
32541045 TTG
65 TTG
32541048 AGTTTGTTTA
Statistics
Matches: 166, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
119 163 0.98
120 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (119 bp):
TTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCT
TGGATCTACTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAAAACG
Done.