Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 103 of 161
Found at i:32541101 original size:202 final size:202
Alignment explanation
Indices: 32540862--32541232 Score: 598
Period size: 202 Copynumber: 1.8 Consensus size: 202
32540852 TTTGAAAACT
* * *
32540862 TTTGAGAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCT
1 TTTGAGAGCCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
* *
32540927 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTTTGAGAATTA
66 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAGAACGTTTGAGAATCA
*
32540992 AATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTT
131 AATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCCAAACCATCTTGAGTTTGTTT
32541057 AAGAACA
196 AAGAACA
* *
32541064 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAATACAAGAATACCAAATCATCT
1 TTTGAGAGCCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
* * * * * *
32541129 TGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCA
66 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAGAACGTTTGAGAATCA
* *
32541194 TATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
131 AATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
32541233 AATACTCAAT
Statistics
Matches: 153, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
202 153 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (202 bp):
TTTGAGAGCCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
TGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTGAGAACGTTTGAGAATCA
AATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCCAAACCATCTTGAGTTTGTTT
AAGAACA
Found at i:32541122 original size:83 final size:83
Alignment explanation
Indices: 32540975--32541130 Score: 204
Period size: 83 Copynumber: 1.9 Consensus size: 83
32540965 GCTATATCTG
* * * * * * *
32540975 AGAACGTTTGAGAATTAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
1 AGAACATTTGAGAATCAAATCTGCAATGTCCTCAATTTGTCCCTTGTAAACACAAGAATACCAAA
32541040 CCATCTTGAGTTTGTTTA
66 CCATCTTGAGTTTGTTTA
* * * *
32541058 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAATACAAGAATACCAAA
1 AGAACATTTGAGAATCAAATCTGCAATGTCCTCAATTTGTCCCTTGTAAACACAAGAATACCAAA
*
32541123 TCATCTTG
66 CCATCTTG
32541131 GATCTGCTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
83 61 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (83 bp):
AGAACATTTGAGAATCAAATCTGCAATGTCCTCAATTTGTCCCTTGTAAACACAAGAATACCAAA
CCATCTTGAGTTTGTTTA
Found at i:32541246 original size:321 final size:321
Alignment explanation
Indices: 32540672--32541290 Score: 1087
Period size: 321 Copynumber: 1.9 Consensus size: 321
32540662 TGAGAGTCAT
* * *
32540672 ATCTGCAATGTCCTCGTTTTTTCCCTTGTAAGCCCAAGGATGCCAAACCATCTTGAGTTTGTTTA
1 ATCTGCAATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTA
*
32540737 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
66 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAA
*
32540802 TCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGTTACATTTGAAAACTTTTGA
131 TCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAAAACTTTTGA
*
32540867 GAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAGGAATACCAAATCATCTTGGAT
196 GAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGAT
*
32540932 CTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTTTGAGAATTAA
261 CTGCCTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTTTGAGAATTAA
*
32540993 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTA
1 ATCTGCAATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTA
*
32541058 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAATACAAGAATACCAAA
66 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAA
* * *
32541123 TCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGA
131 TCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAAAACTTTTGA
*
32541188 GAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACTC-AATCATCTTGGA
196 GAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC-CAAATCATCTTGGA
* *
32541252 TCTGCCTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
260 TCTGCCTCAGTATAAACATCTGAAGGTTAAATATGCTAT
32541291 TTTCAATTTG
Statistics
Matches: 282, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
321 281 1.00
322 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (321 bp):
ATCTGCAATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTA
AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAAAACTTTTGA
GAGCCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGAT
CTGCCTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTTTGAGAATTAA
Found at i:32541269 original size:119 final size:119
Alignment explanation
Indices: 32541058--32541289 Score: 394
Period size: 119 Copynumber: 1.9 Consensus size: 119
32541048 AGTTTGTTTA
*
32541058 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAATACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAA
* *
32541123 TCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACATTTG
66 TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTG
* * *
32541177 AGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACTC-A
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATAC-CAA
32541241 ATCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTGCTA
65 ATCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTGCTA
32541290 TTTTCAATTT
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 105 0.99
120 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (119 bp):
AGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTG
Found at i:32542156 original size:20 final size:22
Alignment explanation
Indices: 32542133--32542176 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
32542123 TCACCTTGGC
32542133 CTCTCTA-TTTTTTCT-TTTTT
1 CTCTCTATTTTTTTCTCTTTTT
*
32542153 CTCTTTATTTTTTTCTCTTTTT
1 CTCTCTATTTTTTTCTCTTTTT
32542175 CT
1 CT
32542177 TTTCTTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 8 0.38
22 7 0.33
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (22 bp):
CTCTCTATTTTTTTCTCTTTTT
Found at i:32542164 original size:21 final size:21
Alignment explanation
Indices: 32542140--32542185 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32542130 GGCCTCTCTA
32542140 TTTTTTCT-TTTTTCTCTTTAT
1 TTTTTTCTCTTTTTCT-TTTAT
*
32542161 TTTTTTCTCTTTTTCTTTTCT
1 TTTTTTCTCTTTTTCTTTTAT
32542182 TTTT
1 TTTT
32542186 GAAATAGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTCTCTTTTTCTTTTAT
Found at i:32542166 original size:14 final size:13
Alignment explanation
Indices: 32542142--32542185 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
32542132 CCTCTCTATT
32542142 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
32542156 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
32542170 TTTTTCTTTTCT-
1 TTTTTTTTTTCTC
32542182 TTTT
1 TTTT
32542186 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 4 0.14
13 8 0.29
14 15 0.54
15 1 0.04
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:32557191 original size:40 final size:40
Alignment explanation
Indices: 32557131--32557319 Score: 333
Period size: 40 Copynumber: 4.7 Consensus size: 40
32557121 TGAGCATTGG
*
32557131 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
*
32557171 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
32557211 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
* *
32557251 GATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
*
32557291 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
32557320 ATGTGTTTGC
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.21
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
Found at i:32565748 original size:40 final size:40
Alignment explanation
Indices: 32565688--32565796 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 40
32565678 TGAGCATTGG
*
32565688 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
*
32565728 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
*
32565768 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
32565797 ATGTGTTTGC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.20
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
Found at i:32569959 original size:16 final size:17
Alignment explanation
Indices: 32569924--32569967 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
32569914 AACTTTATAA
* *
32569924 TTTTTTTCTTTAGTTTC
1 TTTTCTTCTTTAGTTCC
32569941 TTTTCTTCTTT-GTTCC
1 TTTTCTTCTTTAGTTCC
*
32569957 TTTCCTTCTTT
1 TTTTCTTCTTT
32569968 TTCTTCTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.02, C:0.20, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTCTTCTTTAGTTCC
Found at i:32583419 original size:45 final size:45
Alignment explanation
Indices: 32583256--32583560 Score: 177
Period size: 46 Copynumber: 6.7 Consensus size: 45
32583246 ATTCGGGACT
* * * * *
32583256 TGATGTCATAGTGTCTTTCAACCATGGTCTTATTCATTT--TTCATCA
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGATT--T-G
* ** * * ** *
32583302 TGTTGCCATAGTGTCTTTCAATTATGGTTTTATTCATTTTCTGTCG
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGAT-TTG
* ** * * *
32583348 TGTTATCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGATTTG
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGATTTG
* * *
32583393 TGATGCCATAGTGTCTTTCAGTTATGGTCTTACTCAATAGAATTTG
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTG-ATTTG
* *** * * * * **
32583439 TGATTCCATAACATCTTTCAGCTATAGTTTTACTCGA-TAGAATCA
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTC-ATTTGATTTG
** * *
32583484 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCATTT-ATGGTA
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGAT-TTG
* *
32583529 TGGTGCCATAGTGTCTTTTAGCTATGGTCTTA
1 TGATGCCATAGTGTCTTTCAGCTATGGTCTTA
32583561 TTTATTTCCG
Statistics
Matches: 206, Mismatches: 46, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
44 2 0.01
45 96 0.47
46 105 0.51
47 1 0.00
48 1 0.00
49 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (45 bp):
TGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGATTTG
Found at i:32583456 original size:46 final size:46
Alignment explanation
Indices: 32583360--32583519 Score: 171
Period size: 45 Copynumber: 3.5 Consensus size: 46
32583350 TTATCATAGT
* * ** * **
32583360 GTCTTTCAACTATGGTCTTATTCGTTTG-ATTTGTGATGCCATAGT
1 GTCTTTCAGCTATGGTCTTACTCAATAGAATTTGTGATGCCATAAC
* *
32583405 GTCTTTCAGTTATGGTCTTACTCAATAGAATTTGTGATTCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCAATAGAATTTGTGATGCCATAAC
* * * * **
32583451 ATCTTTCAGCTATAGTTTTACTCGATAGAA-TCATGATGCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCAATAGAATTTGTGATGCCATAAC
32583496 GTCTTTCAGCTATGGTCTTACTCA
1 GTCTTTCAGCTATGGTCTTACTCA
32583520 TTTATGGTAT
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 54 0.58
46 39 0.42
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (46 bp):
GTCTTTCAGCTATGGTCTTACTCAATAGAATTTGTGATGCCATAAC
Found at i:32583586 original size:45 final size:45
Alignment explanation
Indices: 32583487--32583614 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
32583477 AGAATCATGA
** * * ** * *
32583487 TGCCATAACGTCTTTCAGCTATGGTCTTACTCATTTATGGTATGG
1 TGCCATAGTGTCTTTTAGCTATGGTCTTAATCATTTCCGATATAG
* *
32583532 TGCCATAGTGTCTTTTAGCTATGGTCTTATTTATTTCCGATATAG
1 TGCCATAGTGTCTTTTAGCTATGGTCTTAATCATTTCCGATATAG
* *
32583577 TGTCGTAGTGTCTTTCTA-CTATGGTCTTAATCATTTCC
1 TGCCATAGTGTCTTT-TAGCTATGGTCTTAATCATTTCC
32583615 TTCAAGAAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
45 67 0.97
46 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.45
Consensus pattern (45 bp):
TGCCATAGTGTCTTTTAGCTATGGTCTTAATCATTTCCGATATAG
Found at i:32586389 original size:28 final size:28
Alignment explanation
Indices: 32586334--32586390 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
32586324 CAGTATTAGT
* * * *
32586334 ACAGTGTGGGCCTTATCCCATTATAGTA
1 ACAGTGTGGGCCTTAACCAAATACAGTA
32586362 ACAGTGTGGGCCTTAACCAAATACAGTA
1 ACAGTGTGGGCCTTAACCAAATACAGTA
32586390 A
1 A
32586391 TTAGTACAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAACCAAATACAGTA
Found at i:32586583 original size:26 final size:26
Alignment explanation
Indices: 32586509--32586583 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
32586499 ACTAATATCG
* *
32586509 CAGCAAAGCTGCCAGTAATAATAATA
1 CAGCAAAGCTGCCAGTAATAGTAACA
* * *
32586535 CAGCAAAGCTACCAGTAACAGTAACG
1 CAGCAAAGCTGCCAGTAATAGTAACA
*
32586561 TAGCAAAGCTGCCAGTAATAGTA
1 CAGCAAAGCTGCCAGTAATAGTA
32586584 TATATGGCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAATAGTAACA
Found at i:32586823 original size:27 final size:27
Alignment explanation
Indices: 32586793--32587254 Score: 379
Period size: 27 Copynumber: 17.1 Consensus size: 27
32586783 ATTTTTGTCT
*
32586793 TTTTACCCTACGAGGGTATTTTGATAA
1 TTTTACCCTACGAGGGTATTTCGATAA
*
32586820 TTTTACCCTA-TAGGGGTATTTCGATAA
1 TTTTACCCTACGA-GGGTATTTCGATAA
* * *
32586847 TTTTACCCCT-CAAGGGTATTTTGGTAA
1 TTTTA-CCCTACGAGGGTATTTCGATAA
* * *
32586874 TTTTACCCTTCCAGGGTATTTCAATAA
1 TTTTACCCTACGAGGGTATTTCGATAA
* * *
32586901 TTTAACCCGATA-G-GGGTATTTTGGTAA
1 TTTTACCC--TACGAGGGTATTTCGATAA
*
32586928 TTTTACCCTTCGAGGGTACTTT-GATAA
1 TTTTACCCTACGAGGGTA-TTTCGATAA
* *
32586955 TTTTACCCTATTG-GGGTATTT-TAGTAA
1 TTTTACCCTA-CGAGGGTATTTCGA-TAA
* * *
32586982 TTTTACCCTTCGAGAGTATTTCGATAT
1 TTTTACCCTACGAGGGTATTTCGATAA
*
32587009 TTTTACCCTATGAGGGTATTTCGATAA
1 TTTTACCCTACGAGGGTATTTCGATAA
*
32587036 TTTTACCCTTCGAGGGTATTTCGATAA
1 TTTTACCCTACGAGGGTATTTCGATAA
* * * *
32587063 TTTTACACAATGGGGGTATTTC-AGTAA
1 TTTTACCCTACGAGGGTATTTCGA-TAA
** *
32587090 TTTTACCCTTTGAGGGTATTTCGGTAA
1 TTTTACCCTACGAGGGTATTTCGATAA
*
32587117 TTTTACCCTTA-AAGGGTATTTCGATAA
1 TTTTACCC-TACGAGGGTATTTCGATAA
* * * *
32587144 TTTAACCCAATG-GGGTTATTTCGGTAA
1 TTTTACCCTACGAGGG-TATTTCGATAA
*** * *
32587171 TTTTACCCTTTAAAGGTATTTTGATAA
1 TTTTACCCTACGAGGGTATTTCGATAA
* * *
32587198 TTTTACCCTTCGAGGGCATTTCGGTAA
1 TTTTACCCTACGAGGGTATTTCGATAA
* *
32587225 TTTAACCCTATCG-GGGTATTTCGGTAA
1 TTTTACCCTA-CGAGGGTATTTCGATAA
32587252 TTT
1 TTT
32587255 GTGGCCCATT
Statistics
Matches: 350, Mismatches: 65, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 16 0.05
27 317 0.91
28 15 0.04
29 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTACCCTACGAGGGTATTTCGATAA
Found at i:32586890 original size:81 final size:81
Alignment explanation
Indices: 32586765--32587254 Score: 490
Period size: 81 Copynumber: 6.0 Consensus size: 81
32586755 TATAACAGTT
** ** * * *
32586765 ATTTTACCCTTCGGGGGTATTTTTG-TCTTTTTACCCTACGAGGGTATTTTGATAATTTTACCCT
1 ATTTTACCCTTCAAGGGTA-TTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCT
32586829 ATAGGGGTATTTCGATA
65 ATAGGGGTATTTCGATA
* * * * *
32586846 ATTTTACCCCTCAAGGGTATTTTGGTAATTTTACCCTTCCAGGGTATTTCAATAATTTAACCCGA
1 ATTTTACCCTTCAAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCTA
* *
32586911 TAGGGGTATTTTGGTA
66 TAGGGGTATTTCGATA
* * * * *
32586927 ATTTTACCCTTCGAGGGTACTTTGATAATTTTACCCTATTG-GGGTATTT-TAGTAATTTTACCC
1 ATTTTACCCTTCAAGGGTATTTTGATAATTTTACCCT-TCGAGGGTATTTCGA-TAATTTAACCC
* *
32586990 T-TCGAGAGTATTTCGATA
64 TATAG-GGGTATTTCGATA
* * * * * *
32587008 TTTTTACCCTAT-GAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGATAATTTTACACA
1 ATTTTACCCT-TCAAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCT
*
32587072 ATGGGGGTATTTC-AGTA
65 ATAGGGGTATTTCGA-TA
** * * ** *
32587089 ATTTTACCCTTTGAGGGTATTTCGGTAATTTTACCCTTAAAGGGTATTTCGATAATTTAACCCAA
1 ATTTTACCCTTCAAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCTA
*
32587154 T-GGGGTTATTTCGGTA
66 TAGGGG-TATTTCGATA
* * * *
32587170 ATTTTACCCTTTAAAGGTATTTTGATAATTTTACCCTTCGAGGGCATTTCGGTAATTTAACCCTA
1 ATTTTACCCTTCAAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCTA
* *
32587235 TCGGGGTATTTCGGTA
66 TAGGGGTATTTCGATA
32587251 ATTT
1 ATTT
32587255 GTGGCCCATT
Statistics
Matches: 345, Mismatches: 51, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
80 16 0.05
81 320 0.93
82 9 0.03
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (81 bp):
ATTTTACCCTTCAAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATAATTTAACCCTA
TAGGGGTATTTCGATA
Found at i:32594999 original size:41 final size:41
Alignment explanation
Indices: 32594931--32595008 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
32594921 CACCGACTTG
* * *
32594931 TGTTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATT
1 TGTTACGTGTAAAACCATATCTAGGACAGTGGCATCGTATT
* * *
32594972 TGTTTCGTGTAAAACCCTATCTGGGACAGTGGCATCG
1 TGTTACGTGTAAAACCATATCTAGGACAGTGGCATCG
32595009 ATATGTGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (41 bp):
TGTTACGTGTAAAACCATATCTAGGACAGTGGCATCGTATT
Found at i:32597054 original size:26 final size:26
Alignment explanation
Indices: 32596982--32597058 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
32596972 ACACCAATAT
* * *
32596982 CACAGCAAAGCTACCAGTAATAATAA
1 CACAGCAAAGCTGCCAGTAACAGTAA
32597008 CACAGCAAAGCTGCCAGTAACAGTAA
1 CACAGCAAAGCTGCCAGTAACAGTAA
* *
32597034 CGCAGTAAAGCTGCCAGTAACAGTA
1 CACAGCAAAGCTGCCAGTAACAGTA
32597059 TATGTGGCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.43, C:0.25, G:0.18, T:0.14
Consensus pattern (26 bp):
CACAGCAAAGCTGCCAGTAACAGTAA
Found at i:32597265 original size:27 final size:27
Alignment explanation
Indices: 32597238--32597537 Score: 299
Period size: 27 Copynumber: 11.1 Consensus size: 27
32597228 TATAACAGTC
* *
32597238 ATTTTACCCTTCGGGGGTATTTCGGTC
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
32597265 ATTTT-CTCTTTCGAGGGTATTTTGGTC
1 ATTTTAC-CCTTCGAGGGTATTTCGGTA
* **
32597292 TTTTTACCCTTCGAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
***
32597319 ATTTTACCCTAT--ATGGGTATTTTAATA
1 ATTTTACCCT-TCGA-GGGTATTTCGGTA
*
32597346 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
32597373 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
** *
32597400 ATTTTACCCTTTAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
32597427 ATTTCACCCTAT-G-GGGTTATTTCGGTA
1 ATTTTACCCT-TCGAGGG-TATTTCGGTA
* *
32597454 ATTTTACCCTTTGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
32597481 TTTTTACCCTTCGAGGGCATTTCTGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
32597508 ATTTTACCCTATAG-GGGTATTT-GGTA
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
32597534 ATTT
1 ATTT
32597538 GTGGCCCATT
Statistics
Matches: 233, Mismatches: 29, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
26 14 0.06
27 210 0.90
28 9 0.04
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:32600977 original size:27 final size:27
Alignment explanation
Indices: 32600947--32601124 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
32600937 TTATTGAGCC
* * * *
32600947 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
32600974 CGCACACTTAGGGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32601001 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAGT-CAAAT
** * *
32601029 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32601056 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32601083 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32601110 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32601125 GTACAGTTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32601096 original size:54 final size:54
Alignment explanation
Indices: 32600972--32601123 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
32600962 ATATAATCAA
* * * *
32600972 CTCGCACACTTAGGGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTG-CACATAGTCCAT
** * * *
32601027 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TTCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCA-CATAGTCCAT
*
32601081 TTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
32601124 TGTACAGTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 44 0.53
55 39 0.47
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (54 bp):
CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCACATAGTCCAT
Found at i:32609303 original size:46 final size:46
Alignment explanation
Indices: 32609188--32609355 Score: 178
Period size: 46 Copynumber: 3.7 Consensus size: 46
32609178 GATCGGAGGG
* * * * * * *
32609188 TGCCATGGTGTCTTTCAACCATGGTCTTATTTATTCT-CGACTTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCATGC
* * * *
32609233 TTCCATAATGTCTTTCAACCATGGTCTTATTCATTTTCC-TCCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGT-CATGC
* * **
32609279 TGCCATAGTTTCTTTAAACTATGGTCTTATTCATTTTCCGTTGTGC
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCATGC
32609325 TGCCATAGTGTCTTTCAACTATGGTCTTATT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATT
32609356 TGTTTGATTC
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
45 32 0.31
46 69 0.68
47 1 0.01
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.45
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCATGC
Found at i:32609416 original size:45 final size:45
Alignment explanation
Indices: 32609325--32609537 Score: 237
Period size: 45 Copynumber: 4.7 Consensus size: 45
32609315 TCCGTTGTGC
** * * * * * *
32609325 TGCCATAGTGTCTTTCAACTATGGTCTTATTTGTTTGATTCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATCGTGA
** * * *
32609370 TGCCATGGCATCCTTCAGCTATGGTCTTACTCGATAGAATCATGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATCGTGA
* * * *
32609415 TGCCATAACGTCTTTCAACTATGGTCTTGCTCAATAGAATTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATCGTGA
* **
32609460 TGCCATAACGTCTTTTAGCTGCGGTCTTACTCGATAGAATCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATCGTGA
*
32609505 TGCCATAACGTCTTTCAGCTATGATCTTACTCG
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCG
32609538 TTTCTAGTAT
Statistics
Matches: 137, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.37
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATCGTGA
Found at i:32609577 original size:90 final size:90
Alignment explanation
Indices: 32609383--32609578 Score: 221
Period size: 90 Copynumber: 2.2 Consensus size: 90
32609373 CATGGCATCC
* *
32609383 TTCAGCTATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAACTATGGTCTTGCTCA
1 TTCAGCTATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAACTATGATCTTACTCA
* * *
32609448 ATAGAATTGTGATGCCATAACGTCT
66 ATACAAGTATGATGCCATAACGTCT
* ** * * *
32609473 TTTAGCTGCGGTCTTACTCGATAGAATCGTGATGCCATAACGTCTTTCAGCTATGATCTTACTCG
1 TTCAGCTATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAACTATGATCTTACTCA
* * * * **
32609538 TTTCTAGTATGGTGCCATAGTGTCT
66 ATACAAGTATGATGCCATAACGTCT
* *
32609563 TTCAACTATAGTCTTA
1 TTCAGCTATGGTCTTA
32609579 ATCATTTCCT
Statistics
Matches: 84, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (90 bp):
TTCAGCTATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAACTATGATCTTACTCA
ATACAAGTATGATGCCATAACGTCT
Found at i:32618746 original size:14 final size:14
Alignment explanation
Indices: 32618727--32618755 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32618717 ACTCAATTTT
32618727 TAAAATTTCCAAAA
1 TAAAATTTCCAAAA
32618741 TAAAATTTCCAAAA
1 TAAAATTTCCAAAA
32618755 T
1 T
32618756 TTCCAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAATTTCCAAAA
Found at i:32618833 original size:26 final size:28
Alignment explanation
Indices: 32618804--32618874 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 28
32618794 TCTTATCCCT
32618804 ATTTTACCCCTAG-T-AAAATTTTGACA
1 ATTTTACCCCTAGATAAAAATTTTGACA
* *
32618830 ATTTTA-CCCTCGATAAAAATTTTGACG
1 ATTTTACCCCTAGATAAAAATTTTGACA
*
32618857 ATTTTA-CCCTTGATAAAA
1 ATTTTACCCCTAGATAAAA
32618875 TTTCGAGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 28 0.70
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.38
Consensus pattern (28 bp):
ATTTTACCCCTAGATAAAAATTTTGACA
Found at i:32618860 original size:27 final size:27
Alignment explanation
Indices: 32618818--32618874 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
32618808 TACCCCTAGT
32618818 AAAATTTTGACAATTTTACCCTCGATA
1 AAAATTTTGACAATTTTACCCTCGATA
* *
32618845 AAAATTTTGACGATTTTACCCTTGATA
1 AAAATTTTGACAATTTTACCCTCGATA
32618872 AAA
1 AAA
32618875 TTTCGAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (27 bp):
AAAATTTTGACAATTTTACCCTCGATA
Found at i:32619084 original size:6 final size:6
Alignment explanation
Indices: 32619073--32619099 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32619063 TGCAAATGGA
32619073 CCATTT CCATTT CCATTT CCATTT CCA
1 CCATTT CCATTT CCATTT CCATTT CCA
32619100 GTTTTGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.37, G:0.00, T:0.44
Consensus pattern (6 bp):
CCATTT
Found at i:32619090 original size:48 final size:47
Alignment explanation
Indices: 32618988--32619083 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 47
32618978 TCATTCTTCC
* * **
32618988 ATCATTTTTAAGTAACCTTATATAGGATTGCAAGTTTCCATTTCCATT
1 ATCATTTTTAAGTAACC-TATATAGAATTGCAAATGACCATTTCCATT
32619036 ATCATTTTTAAGTAATCC-ATATAGAATTGCAAATGGACCATTTCCATT
1 ATCATTTTTAAGTAA-CCTATATAGAATTGCAAAT-GACCATTTCCATT
32619084 TCCATTTCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
47 14 0.33
48 26 0.62
49 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (47 bp):
ATCATTTTTAAGTAACCTATATAGAATTGCAAATGACCATTTCCATT
Found at i:32621160 original size:17 final size:17
Alignment explanation
Indices: 32621118--32621160 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
32621108 AAATTAAATT
32621118 AACTAAATTAATTTCTC
1 AACTAAATTAATTTCTC
*
32621135 -ACTTAAATTATTTTCTC
1 AAC-TAAATTAATTTCTC
*
32621152 AACTCAATT
1 AACTAAATT
32621161 CTAAATCCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 18 0.82
18 2 0.09
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (17 bp):
AACTAAATTAATTTCTC
Found at i:32623953 original size:103 final size:103
Alignment explanation
Indices: 32623830--32624090 Score: 522
Period size: 103 Copynumber: 2.5 Consensus size: 103
32623820 TTAATTAATA
32623830 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTTGAAAAAAACA
1 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTTGAAAAAAACA
32623895 TAAAATAATAATTTATTTCTTTATGCAATGAAAAAAAC
66 TAAAATAATAATTTATTTCTTTATGCAATGAAAAAAAC
32623933 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTTGAAAAAAACA
1 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTTGAAAAAAACA
32623998 TAAAATAATAATTTATTTCTTTATGCAATGAAAAAAAC
66 TAAAATAATAATTTATTTCTTTATGCAATGAAAAAAAC
32624036 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTT
1 AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTT
32624091 AAGTGGCTAA
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 158 1.00
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.36
Consensus pattern (103 bp):
AACATAACTTTTTTTTCCTAATTCCATAGAAATGATCCACCCCAATAATTTATTTGAAAAAAACA
TAAAATAATAATTTATTTCTTTATGCAATGAAAAAAAC
Found at i:32626282 original size:104 final size:104
Alignment explanation
Indices: 32626102--32626325 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
32626092 TGTATATAAA
** * *
32626102 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
32626167 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
32626206 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
32626270 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32626310 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
32626326 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32626377 original size:71 final size:72
Alignment explanation
Indices: 32626244--32626395 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
32626234 TCATTGGTGG
* *
32626244 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
32626309 GAGGGGT
66 GAGGGGT
***
32626316 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
32626380 GAGGGGT
66 GAGGGGT
32626387 TGCTAAGTG
1 TGCTAAGTG
32626396 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:32633840 original size:104 final size:104
Alignment explanation
Indices: 32633660--32633883 Score: 394
Period size: 104 Copynumber: 2.2 Consensus size: 104
32633650 TGTATATAAA
** * *
32633660 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
32633725 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
32633764 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
32633829 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32633868 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
32633884 GATATCCATT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 114 1.00
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32633935 original size:71 final size:72
Alignment explanation
Indices: 32633802--32633953 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
32633792 TCATTGGTGG
* *
32633802 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
32633867 GAGGGGT
66 GAGGGGT
***
32633874 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
32633938 GAGGGGT
66 GAGGGGT
32633945 TGCTAAGTG
1 TGCTAAGTG
32633954 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:32640552 original size:22 final size:22
Alignment explanation
Indices: 32640527--32640585 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 22
32640517 CACTTTTCAA
*
32640527 TTATATAAATTAT-TACAATATC
1 TTAT-TAAATTATATAAAATATC
*
32640549 TTATTTAATTATATAAAATA--
1 TTATTAAATTATATAAAATATC
* *
32640569 TTATTCAATTACATAAA
1 TTATTAAATTATATAAA
32640586 TTATTACAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 15 0.47
21 7 0.22
22 10 0.31
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (22 bp):
TTATTAAATTATATAAAATATC
Found at i:32640578 original size:20 final size:20
Alignment explanation
Indices: 32640549--32640591 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32640539 TTACAATATC
* *
32640549 TTATTTAATTATATAAAATA
1 TTATTCAATTACATAAAATA
*
32640569 TTATTCAATTACATAAATTA
1 TTATTCAATTACATAAAATA
32640589 TTA
1 TTA
32640592 CAAGTTTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATTCAATTACATAAAATA
Found at i:32642819 original size:22 final size:23
Alignment explanation
Indices: 32642794--32642845 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
32642784 ACTAATCTTA
32642794 TCTCAAATTTCC-TCCAATTTCC
1 TCTCAAATTTCCTTCCAATTTCC
*
32642816 TCTCAAA-TTCCTTCCAATTTTC
1 TCTCAAATTTCCTTCCAATTTCC
32642838 TCTCAAAT
1 TCTCAAAT
32642846 CCATATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (23 bp):
TCTCAAATTTCCTTCCAATTTCC
Found at i:32642926 original size:10 final size:10
Alignment explanation
Indices: 32642900--32642940 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
32642890 CTTAAATCCC
32642900 TTTTTTTAAA
1 TTTTTTTAAA
**
32642910 TAATTTTAAA
1 TTTTTTTAAA
32642920 TTTTTTTTAAA
1 -TTTTTTTAAA
32642931 TTTTTTTAAA
1 TTTTTTTAAA
32642941 CCGTAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:32642926 original size:21 final size:21
Alignment explanation
Indices: 32642900--32642940 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32642890 CTTAAATCCC
32642900 TTTTTTTAAATAATTTTAAAT
1 TTTTTTTAAATAATTTTAAAT
**
32642921 TTTTTTTAAATTTTTTTAAA
1 TTTTTTTAAATAATTTTAAA
32642941 CCGTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTTTAAATAATTTTAAAT
Found at i:32642927 original size:11 final size:11
Alignment explanation
Indices: 32642900--32642937 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32642890 CTTAAATCCC
32642900 TTTTTTTAAA-
1 TTTTTTTAAAT
**
32642910 TAATTTTAAAT
1 TTTTTTTAAAT
32642921 TTTTTTTAAAT
1 TTTTTTTAAAT
32642932 TTTTTT
1 TTTTTT
32642938 AAACCGTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTTTAAAT
Found at i:32643085 original size:14 final size:15
Alignment explanation
Indices: 32643054--32643084 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32643044 TTTTTAAATA
32643054 TTATTTAAGAATTTT
1 TTATTTAAGAATTTT
*
32643069 TTATTTAAGCATTTT
1 TTATTTAAGAATTTT
32643084 T
1 T
32643085 AGATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (15 bp):
TTATTTAAGAATTTT
Found at i:32645332 original size:21 final size:21
Alignment explanation
Indices: 32645298--32647962 Score: 3114
Period size: 21 Copynumber: 126.2 Consensus size: 21
32645288 TTTAATTGAC
* **
32645298 AAAAACCTTCAACCCTTAACAA
1 AAAAACCCT-AACCCTTAACTT
32645320 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
32645341 AAAAACCCTAACCCTTAA-TT
1 AAAAACCCTAACCCTTAACTT
* *
32645361 AAAAACCTTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
32645382 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645403 AATAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
32645424 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645445 AAAAACCATAAACCATTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32645467 AAAAATCCTAACCC-TACAC-T
1 AAAAACCCTAACCCTTA-ACTT
*
32645487 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32645508 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32645529 AAAAACCCTAAACCTTCAA-TT
1 AAAAACCCTAACCCTT-AACTT
32645550 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
32645571 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * * * *
32645592 AATAATCGTAAACCATAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645613 AAAAACCATAAACCATTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32645635 AAAAATCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645656 CAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32645677 AAAAACCCTAAACCTTAAATT
1 AAAAACCCTAACCCTTAACTT
32645698 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32645719 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* * *
32645740 -AAAACCCTAAACCTTCACCT
1 AAAAACCCTAACCCTTAACTT
* * *
32645760 AAAAACCCTAAACCTTCACCT
1 AAAAACCCTAACCCTTAACTT
*
32645781 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645802 CAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32645824 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32645845 AAAAACCTTAACCCTTAATTT
1 AAAAACCCTAACCCTTAACTT
* *
32645866 AATAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32645887 AAAAATCACAAACCCTTAACTT
1 AAAAA-CCCTAACCCTTAACTT
* *
32645909 AAAAACCCAAACTCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32645930 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32645951 AAAAACTCTATA-TCTTAACTT
1 AAAAACCCTA-ACCCTTAACTT
* * *
32645972 AAAAACCCTAAACGTTAAATT
1 AAAAACCCTAACCCTTAACTT
32645993 AAAAACCAC-AACCCTTAACTT
1 AAAAACC-CTAACCCTTAACTT
*
32646014 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
**
32646035 AAAAACCCTAAATCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32646056 CATAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646077 AAAAATCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32646099 AAAAAACCTTAACCCTTAACTT
1 -AAAAACCCTAACCCTTAACTT
***
32646121 -AAAACCCTAAAGTTTAACTT
1 AAAAACCCTAACCCTTAACTT
***
32646141 -AAAACCCTAAAGTTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646161 AAAAACCATACGCCCTTAACTT
1 AAAAACCCTA-ACCCTTAACTT
*
32646183 AAAAACCCTAACTCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646204 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32646225 -AAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646245 AAAAACCATAAACTCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32646267 AAAAACCCTAACCCTAAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646288 -AAAACCATAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
**
32646308 -AAAACCCTAAATCTTAACTTAAT
1 AAAAACCCTAACCCTTAAC-T--T
*
32646331 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32646352 -AAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646372 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32646394 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32646415 AAAAACCCTAAACCTTAAATT
1 AAAAACCCTAACCCTTAACTT
**
32646436 AAAAACTATAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646457 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32646478 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32646499 AATAACCCTAAACCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32646520 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
32646541 -AAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646561 -AAAACCCTAAACCTTCACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32646581 AAAAACCCTAAACATTAAATT
1 AAAAACCCTAACCCTTAACTT
32646602 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646623 AAAACCCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32646644 AACAACCGTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646665 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32646687 AAAAATCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646708 AAAAACTCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32646729 AAAAACCCTAAACCTTAAATT
1 AAAAACCCTAACCCTTAACTT
**
32646750 AAAAACTATAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646771 AAAAACCCTAACCCTTAACTA
1 AAAAACCCTAACCCTTAACTT
* *
32646792 AAAAACCATAAACCATTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32646814 AAAAATCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646835 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
32646857 AAAAACCCTAACCC-TACACTT
1 AAAAACCCTAACCCTTA-ACTT
*
32646878 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32646899 AATAATCGTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32646920 AAAAACCATAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646941 AAAAACCTTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32646962 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32646983 AATAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647004 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32647026 AAAAATCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647047 AAAAACTCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32647068 AAAAACCCTAAACCTTAAATT
1 AAAAACCCTAACCCTTAACTT
**
32647089 AAAAACTATAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647110 AAAAACCCTAACCCTTAACTA
1 AAAAACCCTAACCCTTAACTT
* *
32647131 AAAAACCATAAACCATTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32647153 AAAAATCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647174 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32647196 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32647217 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647238 AATAGCCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
**
32647259 AAAAACAATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*
32647281 AAAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32647302 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647323 AATAGCCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
**
32647344 AAAAACAATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
32647366 AAAAACCCTAACCC-TACACTT
1 AAAAACCCTAACCCTTA-ACTT
*
32647387 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647408 AATAATCGTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647429 AAAAACCATAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647450 AAAAACCTTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32647471 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647492 AATAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647513 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
*** *
32647535 AAAAACCCTAATTGTTAATTT
1 AAAAACCCTAACCCTTAACTT
32647556 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647577 AAAAACCCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * * *
32647598 AATAACCCTAAACTTTAAATT
1 AAAAACCCTAACCCTTAACTT
*
32647619 AAAAACCCTAACCCTCAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647640 AAAAACCCTAAACTTTATCTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647661 AAAAACCATAAACCCATAATTT
1 AAAAACCCT-AACCCTTAACTT
32647683 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647704 ACAAACCCTAACCCTTAAATT
1 AAAAACCCTAACCCTTAACTT
** *
32647725 AAAAATGCTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * * *
32647746 AATAACCTTAAACCTTAATTT
1 AAAAACCCTAACCCTTAACTT
* *
32647767 AAAAACCCTAAACATTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647788 AAAAACACTAACCTTTAAATT
1 AAAAACCCTAACCCTTAACTT
* *
32647809 AAAAACCCTAAACTTTAACTT
1 AAAAACCCTAACCCTTAACTT
* * *
32647830 AATAACCTTAAACCTTAACTT
1 AAAAACCCTAACCCTTAACTT
*
32647851 AAAAACCATAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
32647873 AAAAACCCTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647894 AAAAACTCTAACTCTTAACTT
1 AAAAACCCTAACCCTTAACTT
* *
32647915 AAAAACTCTAAAACCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
32647937 AAAAACCCTAAACCCTTAACTT
1 AAAAACCCT-AACCCTTAACTT
32647959 AAAA
1 AAAA
32647963 GCCTTAAGGT
Statistics
Matches: 2266, Mismatches: 333, Indels: 88
0.84 0.12 0.03
Matches are distributed among these distances:
20 200 0.09
21 1647 0.73
22 395 0.17
23 9 0.00
24 15 0.01
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAAACCCTAACCCTTAACTT
Found at i:32645679 original size:127 final size:127
Alignment explanation
Indices: 32645298--32647962 Score: 3144
Period size: 127 Copynumber: 21.0 Consensus size: 127
32645288 TTTAATTGAC
* ** *
32645298 AAAAACCTTCAACCCTTAACAAAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAA-TTA
1 AAAAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTA
* * * *
32645362 AAAA-CCTTAACCCTTAAATTAAAAACCCTAACCCTTAACTTAATAACCCTAAACCTTAACTT
65 AAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * *
32645424 AAAAACCCTAACCCTTAACTTAAAAACCATAAACCATTAACTTAAAAATCCT-AACCCTACAC-T
1 AAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCTTA-ACTT
* * *
32645487 AAAAACCCT-AACCCTTAAATTAAAAACCCTAAACCTTAACTTAAAAACCCTAAACCTTCAA-TT
64 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTT-AACTT
* * * *
32645550 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAATAATCGTAAACCATAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * *
32645615 AAACCATAAACCATTAACTTAAAAATCCTAACCCTTAACTTCAAAACCCTAACCCTTAAATT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * *
32645677 AAAAACCCTAAACCTTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAAATT-A
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * * *
32645741 AAACCCTAAA-CCTTCACCTAAAAACCCTAAACCTTCACCTAAAAACCCTAAACCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * * *
32645802 CAAAACCATAAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCTTAACCCTTAATTTA
1 AAAAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTA
* * * * *
32645867 ATAACCCTAAA-CCTTAACTTAAAAATCACAAACCCTTAACTTAAAAACCCAAACTCTTAACTT
65 AAAACCCTAAACCCTTAACTTAAAAA-CCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * *
32645930 AAAAACCCTAACCCTTAAATTAAAAACTCTATA-TCTTAACTTAAAAACCCTAAACGTTAAATTA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTA-ACCCTTAACTTAAAAACCCTAAACCTTAACTTA
* **
32645994 AAAA-CC-ACAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAATCTTAACTT
65 AAAACCCTA-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * * * *
32646056 CATAACCCTAAACCTTAACTTAAAAATCATAAACCCTTAACTTAAAAAACCTTAACCCTTAACTT
1 AAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-AAAAACCCTAAACCTTAACTT
** *** * *
32646121 -AAAACCCTAAA-GTTTAACTT-AAAACCCTAAAGTTTAACTTAAAAACCATACGCCCTTAACTT
64 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTA-ACCCTTAACTT
* *
32646183 AAAAACCCTAACTCTTAACTTAAAAACCCTAACCCTTAAATT-AAAACCCTAAACCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * *
32646247 AAACCATAAACTCTTAACTTAAAAACCCTAACCCTAAACTT-AAAACCATAACCCTTAAATT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
** *
32646308 -AAAACCCTAAATCTTAACTTAATAAAAACCCTAACCCTTAAATT-AAAACCCTAAACCTTAACT
1 AAAAACCCTAACCCTTAAC-T--TAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACT
* * * *
32646371 TAAAAACCATAAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCTTAAATT
63 TAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
** *
32646436 AAAAACTATAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * *
32646501 TAACCCTAAA-CCTTAAATTAAAAACCCTAAACCTTAACTT-AAAACCCTAACCCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * * *
32646561 -AAAACCCTAAACCTTCACTTAAAAACCCTAAACATTAAATTAAAAACCCTAACCCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * *
32646625 AACCCCT-AACCCTTAACTTAACAACCGTAAACCTTAACTTAAAAACCATAAACCCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTT
* * * *
32646687 AAAAATCCTAACCCTTAACTTAAAAACTCTAACCCTTAAATTAAAAACCCTAAACCTTAAATTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * *
32646752 AAA--CTATAACCCTTAACTTAAAAACCCTAACCCTTAACTAAAAAACCATAAACCATTAACTT
66 AAACCCTA-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTT
* * *
32646814 AAAAATCCTAACCCTTAACTTAAAAACCATAAACCCTTAACTTAAAAACCCT-AACCCTACACTT
1 AAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCTTA-ACTT
* * * *
32646878 AAAAACCCTAAA-CCTTAACTTAATAATCGTAACCCTTAACTTAAAAACCATAACCCTTAACTT
64 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * *
32646941 AAAAACCTTAACCCTTAAATTAAAAACCCTAAACCTTAACTTAATAACCCTAAACCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * *
32647006 AAACCATAAACCCTTAACTTAAAAATCCTAACCCTTAACTTAAAAACTCTAACCCTTAAATT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * ** * *
32647068 AAAAACCCTAAACCTTAAATTAAAAACTATAACCCTTAACTTAAAAACCCTAACCCTTAACTAAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * *
32647133 AAACCATAAACCATTAACTTAAAAATCCTAACCCTTAACTTAAAAACCATAAACCCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTT
* * * *
32647196 AAAAACCCTAACCCTTAAATTAAAAACCCTAAACCTTAACTTAATAGCCCTAAACCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
** * *
32647261 AAACAATAAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * ** *
32647323 AATAGCCCTAAACCTTAACTTAAAAACAATAAACCCTTAACTTAAAAACCCT-AACCCTACACTT
1 AAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCTTA-ACTT
* * * *
32647387 AAAAACCCTAAA-CCTTAACTTAATAATCGTAACCCTTAACTTAAAAACCATAACCCTTAACTT
64 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * *
32647450 AAAAACCTTAACCCTTAAATTAAAAACCCTAAACCTTAACTTAATAACCCTAAACCTTAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* *** *
32647515 AAACCATAAACCCTTAACTTAAAAACCCTAATTGTTAATTTAAAAACCCTAACCCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * * * *
32647577 AAAAACCCTAAACCTTAACTTAATAACCCTAAACTTTAAATTAAAAACCCTAACCCTCAACTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * *
32647642 AAACCCTAAA-CTTTATCTTAAAAACCATAAACCCATAATTTAAAAACCCTAACCCTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * ** * * * *
32647704 ACAAACCCTAACCCTTAAATTAAAAATGCTAAACCTTAACTTAATAACCTTAAACCTTAATTTAA
1 AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
* * * * * *
32647769 AAACCCTAAA-CATTAACTTAAAAACACTAACCTTTAAATTAAAAACCCTAAACTTTAACTT
66 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
* * * * *
32647830 AATAACCTTAAACCTTAACTTAAAAACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
1 AAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCTTAACTTA
* * * *
32647895 AAAACTCT-AACTCTTAACTTAAAAACTCTAAAACCTTAACTTAAAAACCCTAAACCCTTAACTT
65 AAAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTT
32647959 AAAA
1 AAAA
32647963 GCCTTAAGGT
Statistics
Matches: 2180, Mismatches: 307, Indels: 101
0.84 0.12 0.04
Matches are distributed among these distances:
123 2 0.00
124 124 0.06
125 139 0.06
126 496 0.23
127 1083 0.50
128 303 0.14
129 30 0.01
130 3 0.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (127 bp):
AAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCTTAACTTAA
AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT
Found at i:32651350 original size:124 final size:125
Alignment explanation
Indices: 32651129--32651660 Score: 825
Period size: 125 Copynumber: 4.3 Consensus size: 125
32651119 CCCAAACATG
*
32651129 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
32651194 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTT-TTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
* * * *
32651253 TTACTGTAGCAAAAGCGCGTCCACAAGGGCGGGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
32651318 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
* *
32651378 CTACTGTAGCAAAAGAGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
32651443 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
* ** * * * * *
32651503 CTACTGTAGCAAAAGCGCCTTGATGAGGGTGCGATTTCACAAATTCTTATCAAACAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
32651568 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTTCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
* * * *
32651627 CTACTGTAGCAAAAGTGCATACACGTGGGCGCGA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGA
32651661 CTTATTTGTT
Statistics
Matches: 371, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
124 143 0.39
125 228 0.61
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
Found at i:32651627 original size:249 final size:249
Alignment explanation
Indices: 32651129--32651641 Score: 866
Period size: 249 Copynumber: 2.1 Consensus size: 249
32651119 CCCAAACATG
* *
32651129 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGAGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
32651194 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGACTTACTG
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGACCTACTG
* * * * * *
32651259 TAGCAAAAGCGCGTCCACAAGGGCGGGATTTCATAAATTCTTCTCAAATAGCATCCTGCTAGAAG
131 TAGCAAAAGCGCCTCCACAAGGGCGCGATTTCACAAATTCTTATCAAACAGCATCCTACTAGAAG
*
32651324 CGATTTTATACTATTTGCTCAAAAACGTCAAGTCGAAATTATTTCTTCCAGGAC
196 CGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGAC
32651378 CTACTGTAGCAAAAGAGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGAGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
32651443 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTCTTCCAGGACCTACT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTT-TTCCAGGACCTACT
** ** *
32651508 GTAGCAAAAGCGCCTTGATGAGGGTGCGATTTCACAAATTCTTATCAAACAGCATCCTACTAGAA
130 GTAGCAAAAGCGCCTCCACAAGGGCGCGATTTCACAAATTCTTATCAAACAGCATCCTACTAGAA
*
32651573 GCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTTCAGGAC
195 GCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGAC
32651627 CTACTGTAGCAAAAG
1 CTACTGTAGCAAAAG
32651642 TGCATACACG
Statistics
Matches: 247, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
249 136 0.55
250 111 0.45
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (249 bp):
CTACTGTAGCAAAAGAGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGACCTACTG
TAGCAAAAGCGCCTCCACAAGGGCGCGATTTCACAAATTCTTATCAAACAGCATCCTACTAGAAG
CGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:32668906 original size:36 final size:37
Alignment explanation
Indices: 32668866--32668939 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
32668856 TTAACTTTTT
32668866 AAGTATAATGACTAAATCTCAAATTTTGTC-AAGTAC
1 AAGTATAATGACTAAATCTCAAATTTTGTCAAAGTAC
32668902 AAGTATAATGACTAAATCTCAAATTTTGTCAAAGTAC
1 AAGTATAATGACTAAATCTCAAATTTTGTCAAAGTAC
32668939 A
1 A
32668940 GGGACTAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 30 0.81
37 7 0.19
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (37 bp):
AAGTATAATGACTAAATCTCAAATTTTGTCAAAGTAC
Found at i:32674020 original size:3 final size:3
Alignment explanation
Indices: 32674012--32674037 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32674002 CATACATACA
32674012 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
32674038 ATTATAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32676600 original size:49 final size:49
Alignment explanation
Indices: 32676543--32676642 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
32676533 GATATTTTCT
32676543 AGTTGGAATAGAATATTTTCTTTTTTACTTTTAGCAATGAAAACGATAA
1 AGTTGGAATAGAATATTTTCTTTTTTACTTTTAGCAATGAAAACGATAA
32676592 AGTTGGAATAGAATATTTTCTTTTTTACTTTTAGCAATGAAAACGATAA
1 AGTTGGAATAGAATATTTTCTTTTTTACTTTTAGCAATGAAAACGATAA
32676641 AG
1 AG
32676643 GGTTGAGGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (49 bp):
AGTTGGAATAGAATATTTTCTTTTTTACTTTTAGCAATGAAAACGATAA
Found at i:32679869 original size:40 final size:40
Alignment explanation
Indices: 32679820--32679959 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
32679810 AACACACTAG
* *
32679820 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * * *
32679860 TTTGACACCCAGTGTCTCATCGGCTAAACCAAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * * *
32679898 -TTGGCACCTAGTGCCTCATCGAATATATCCGAAATAATAA
1 TTTGACACCCAGTGCCTCATCGGATA-ATCCGAAGTAATAA
*
32679938 TTTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
32679960 AATCGAAGTC
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 20 0.25
38 8 0.10
39 2 0.03
40 31 0.39
41 18 0.23
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
Found at i:32680165 original size:24 final size:24
Alignment explanation
Indices: 32680120--32680166 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
32680110 TATATATACC
32680120 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
32680144 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
32680167 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:32687774 original size:11 final size:11
Alignment explanation
Indices: 32687751--32687836 Score: 77
Period size: 11 Copynumber: 7.7 Consensus size: 11
32687741 CCCTTTCTCC
32687751 TTTTCTTTCCTT
1 TTTTCTTT-CTT
32687763 TTTTCTTTCTT
1 TTTTCTTTCTT
32687774 TTTTCTTTCTT
1 TTTTCTTTCTT
*
32687785 TTTCCTTTC-T
1 TTTTCTTTCTT
* *
32687795 GTTTCGTTTCTA
1 TTTTC-TTTCTT
* *
32687807 TCTTGTTTCTT
1 TTTTCTTTCTT
*
32687818 TTATTATTTC-T
1 TT-TTCTTTCTT
32687829 TTTTCTTT
1 TTTTCTTT
32687837 TATTTTGTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
10 9 0.15
11 35 0.58
12 16 0.27
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:32697551 original size:2 final size:2
Alignment explanation
Indices: 32697544--32697571 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32697534 GAATCAATTA
32697544 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
32697572 GATCATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:32716599 original size:15 final size:15
Alignment explanation
Indices: 32716581--32716629 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
32716571 AAATTTTAAC
32716581 AAATAAAAATATATA
1 AAATAAAAATATATA
32716596 AAATAACTAAATAT-TA
1 AAATAA--AAATATATA
*
32716612 AATTAAAAATAATATA
1 AAATAAAAAT-ATATA
32716628 AA
1 AA
32716630 TATATATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 4 0.14
15 8 0.28
16 11 0.38
17 6 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAAAAATATATA
Found at i:32716620 original size:22 final size:25
Alignment explanation
Indices: 32716595--32716651 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
32716585 AAAAATATAT
*
32716595 AAAATAA-CTAAATAT-TA-AATTA
1 AAAATAATATAAATATATATAATTA
*
32716617 AAAATAATATAAATATATATATTTA
1 AAAATAATATAAATATATATAATTA
32716642 AAAATAATAT
1 AAAATAATAT
32716652 GGATAAGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 7 0.23
23 7 0.23
24 2 0.07
25 14 0.47
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
AAAATAATATAAATATATATAATTA
Found at i:32721080 original size:13 final size:13
Alignment explanation
Indices: 32721062--32721086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32721052 CACTCTCCTC
32721062 ACCTTTCTGTCTT
1 ACCTTTCTGTCTT
32721075 ACCTTTCTGTCT
1 ACCTTTCTGTCT
32721087 CCACCGATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.08, T:0.52
Consensus pattern (13 bp):
ACCTTTCTGTCTT
Found at i:32721941 original size:13 final size:13
Alignment explanation
Indices: 32721923--32721949 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32721913 TGTTGTTCAA
32721923 GGATATTACCATT
1 GGATATTACCATT
32721936 GGATATTACCATT
1 GGATATTACCATT
32721949 G
1 G
32721950 CTTAAAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GGATATTACCATT
Found at i:32724018 original size:20 final size:22
Alignment explanation
Indices: 32723993--32724038 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
32723983 TACACCGCAT
32723993 TAATTAAAA-ATATT-TTTAAA
1 TAATTAAAATATATTATTTAAA
*
32724013 TAATTAAAATATATTATTTTAA
1 TAATTAAAATATATTATTTAAA
32724035 TAAT
1 TAAT
32724039 ATTACATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATTAAAATATATTATTTAAA
Found at i:32724088 original size:48 final size:49
Alignment explanation
Indices: 32724017--32724110 Score: 172
Period size: 48 Copynumber: 1.9 Consensus size: 49
32724007 TTTAAATAAT
*
32724017 TAAAATATATTATTTTAATAATATTACATATATATCGACTTTTGAAATA
1 TAAAATATATTATTTTAAAAATATTACATATATATCGACTTTTGAAATA
32724066 TAAAA-ATATTATTTTAAAAATATTACATATATATCGACTTTTGAA
1 TAAAATATATTATTTTAAAAATATTACATATATATCGACTTTTGAA
32724111 CCAATGGCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 39 0.89
49 5 0.11
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (49 bp):
TAAAATATATTATTTTAAAAATATTACATATATATCGACTTTTGAAATA
Found at i:32724380 original size:15 final size:15
Alignment explanation
Indices: 32724345--32724386 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32724335 TTAAGAATTT
*
32724345 TATTAAATTAT-ATA
1 TATTTAATTATAATA
32724359 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
32724373 TATTTAATAATAAT
1 TATTTAATTATAAT
32724387 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:32735352 original size:47 final size:47
Alignment explanation
Indices: 32735299--32735591 Score: 413
Period size: 47 Copynumber: 6.4 Consensus size: 47
32735289 CAGCCAAGAC
*
32735299 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32735346 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32735393 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32735440 A--G------TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32735479 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
32735526 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32735573 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32735592 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
39 37 0.17
41 1 0.00
45 1 0.00
47 183 0.82
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32735447 original size:39 final size:39
Alignment explanation
Indices: 32735403--32735530 Score: 175
Period size: 39 Copynumber: 3.1 Consensus size: 39
32735393 AGTGTATATA
*
32735403 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
32735442 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G
32735483 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ------TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
32735528 TGT
1 TGT
32735531 ATATATGTGA
Statistics
Matches: 80, Mismatches: 1, Indels: 16
0.82 0.01 0.16
Matches are distributed among these distances:
39 40 0.50
41 1 0.01
45 1 0.01
47 38 0.47
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (39 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:32735500 original size:86 final size:86
Alignment explanation
Indices: 32735355--32735530 Score: 334
Period size: 86 Copynumber: 2.0 Consensus size: 86
32735345 AAGTGTATAT
32735355 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
32735420 GCCGATGTGATGAATGTGAAA
66 GCCGATGTGATGAATGTGAAA
* *
32735441 GTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
32735506 GCCGATGTGATGAATGTGAAA
66 GCCGATGTGATGAATGTGAAA
32735527 GTGT
1 GTGT
32735531 ATATATGTGA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (86 bp):
GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAA
Found at i:32735563 original size:133 final size:133
Alignment explanation
Indices: 32735309--32735576 Score: 437
Period size: 133 Copynumber: 2.0 Consensus size: 133
32735299 AGTGTATATA
*
32735309 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
* * * *
32735374 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGA
32735439 AAG
131 AAG
* *
32735442 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
* * * *
32735507 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGA
32735572 AAG
131 AAG
32735575 TG
1 TG
32735577 CATAAATGTG
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 124 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (133 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGA
AAG
Found at i:32735766 original size:37 final size:37
Alignment explanation
Indices: 32735710--32735788 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32735700 CCGAGCTCTA
* *
32735710 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32735747 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32735784 AAGAC
1 AAGAC
32735789 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32747854 original size:20 final size:17
Alignment explanation
Indices: 32747807--32747898 Score: 68
Period size: 17 Copynumber: 5.4 Consensus size: 17
32747797 CAAGATAAAC
32747807 ATTAAATTAATATTAAT
1 ATTAAATTAATATTAAT
32747824 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A--TTAAT
*
32747844 ATTAAATTAATA-AAAT
1 ATTAAATTAATATTAAT
* *
32747860 ACT--ATTAACA-TAAGT
1 ATTAAATTAATATTAA-T
*
32747875 ATTAAATTAATTTTAAT
1 ATTAAATTAATATTAAT
32747892 ATTAAAT
1 ATTAAAT
32747899 CTATTAAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
14 8 0.14
15 3 0.05
16 5 0.08
17 22 0.37
18 5 0.08
19 2 0.03
20 14 0.24
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (17 bp):
ATTAAATTAATATTAAT
Found at i:32759715 original size:14 final size:14
Alignment explanation
Indices: 32759690--32759727 Score: 67
Period size: 14 Copynumber: 2.6 Consensus size: 14
32759680 GATTATTGTT
32759690 AGAAGTGTGCTAATG
1 AGAAG-GTGCTAATG
32759705 AGAAGGTGCTAATG
1 AGAAGGTGCTAATG
32759719 AGAAGGTGC
1 AGAAGGTGC
32759728 ATGTCTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.34, C:0.08, G:0.37, T:0.21
Consensus pattern (14 bp):
AGAAGGTGCTAATG
Found at i:32760180 original size:20 final size:18
Alignment explanation
Indices: 32760133--32760181 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
32760123 CAAGATACAC
32760133 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
32760150 ATT-AATATAATCACTTTAAT
1 ATTAAAT-TAAT-A-TTTAAT
32760170 ATTAAATTAATA
1 ATTAAATTAATA
32760182 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.11
17 6 0.22
19 2 0.07
20 13 0.48
21 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:32760193 original size:25 final size:26
Alignment explanation
Indices: 32760145--32760193 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
32760135 TAAATTAAAT
*
32760145 TTAATATTAATATAATCACTTTAATA
1 TTAATATTAATAAAATCACTTTAATA
32760171 TTAA-ATTAATAAAAT-ACTATTAA
1 TTAATATTAATAAAATCACT-TTAA
32760194 GATACGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAATATTAATAAAATCACTTTAATA
Found at i:32760227 original size:37 final size:36
Alignment explanation
Indices: 32760124--32760240 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 36
32760114 GTTTATCTAC
*
32760124 AAGATACACATTAAATTAAATTTAATATT-AA-TA-T
1 AAGATAC-TATTAAATTAAATTTAATATTAAACTATT
*
32760158 -A-ATCACT-TTAATATTAAA-TTAATA-AAATACTATT
1 AAGAT-ACTATTAA-ATTAAATTTAATATTAA-ACTATT
32760192 AAGATACGTATTAAATTAAATTTAATATTAAACTATT
1 AAGATAC-TATTAAATTAAATTTAATATTAAACTATT
* *
32760229 AAAATATTATTA
1 AAGATACTATTA
32760241 TTTTTGAAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
31 11 0.17
32 9 0.14
33 5 0.08
34 1 0.02
35 3 0.05
36 14 0.21
37 21 0.32
38 2 0.03
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (36 bp):
AAGATACTATTAAATTAAATTTAATATTAAACTATT
Found at i:32761783 original size:39 final size:39
Alignment explanation
Indices: 32761729--32761809 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
32761719 TGCCACTTAT
32761729 CTTCAGTTTGAACTTAGACAATCAATGAGCTAATATTTG
1 CTTCAGTTTGAACTTAGACAATCAATGAGCTAATATTTG
32761768 CTTCAGTTTGAACTTAGACAATCAATGAGCTAATATTTG
1 CTTCAGTTTGAACTTAGACAATCAATGAGCTAATATTTG
32761807 CTT
1 CTT
32761810 GTCACAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (39 bp):
CTTCAGTTTGAACTTAGACAATCAATGAGCTAATATTTG
Found at i:32766704 original size:20 final size:22
Alignment explanation
Indices: 32766679--32766718 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
32766669 TATAAGTATA
32766679 TTTTTATTT-TTT-TATGTAAT
1 TTTTTATTTCTTTGTATGTAAT
32766699 TTTTTATTTCTTTGTATGTA
1 TTTTTATTTCTTTGTATGTA
32766719 TGTATTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (22 bp):
TTTTTATTTCTTTGTATGTAAT
Found at i:32769177 original size:24 final size:24
Alignment explanation
Indices: 32769051--32769251 Score: 141
Period size: 24 Copynumber: 8.5 Consensus size: 24
32769041 TTAAGCTTAA
* *
32769051 TATTATTCTTAAATTTATCAT-CAA
1 TATTATT-TTAAATTTATCATGTAT
* * *
32769075 TATTATTTT-AATTTGTAATATAT
1 TATTATTTTAAATTTATCATGTAT
*
32769098 TATTATTTTAAATTTATCAT-TAC
1 TATTATTTTAAATTTATCATGTAT
* *
32769121 CATTA-CTTAAATTTATCATGTATT
1 TATTATTTTAAATTTATCATGTA-T
* *
32769145 TGTTA-TTTAAATTCATCATGTAT
1 TATTATTTTAAATTTATCATGTAT
*
32769168 TATTATTTTAAGTTTTAT-ATGTAT
1 TATTATTTTAA-ATTTATCATGTAT
* *
32769192 TATTATTCTAAGTTT-TCATGTGCAAT
1 TATTATTTTAAATTTATCATGT---AT
* *
32769218 TGCTT-TTTT-AATTTATCATATAT
1 T-ATTATTTTAAATTTATCATGTAT
32769241 TATTATTTTAA
1 TATTATTTTAA
32769252 TTCCATCTAT
Statistics
Matches: 139, Mismatches: 24, Indels: 28
0.73 0.13 0.15
Matches are distributed among these distances:
22 24 0.17
23 39 0.28
24 55 0.40
25 8 0.06
26 11 0.08
27 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (24 bp):
TATTATTTTAAATTTATCATGTAT
Found at i:32769249 original size:23 final size:23
Alignment explanation
Indices: 32769051--32769253 Score: 137
Period size: 23 Copynumber: 8.6 Consensus size: 23
32769041 TTAAGCTTAA
* *
32769051 TATTATTCTTAAATTTATCAT-CAA
1 TATTATT-TT-AATTTATCATGTAT
* * *
32769075 TATTATTTTAATTTGTAATATAT
1 TATTATTTTAATTTATCATGTAT
*
32769098 TATTATTTTAAATTTATCAT-TAC
1 TATTATTTT-AATTTATCATGTAT
* * *
32769121 CATTACTTAAATTTATCATGTATT
1 TATTATTTTAATTTATCATGTA-T
* * *
32769145 TGTTATTTAAATTCATCATGTAT
1 TATTATTTTAATTTATCATGTAT
32769168 TATTATTTTAAGTTTTAT-ATGTAT
1 TATTATTTTAA--TTTATCATGTAT
*
32769192 TATTATTCTAAGTTT-TCATGTGCAAT
1 TATTATTTTAA-TTTATCATGT---AT
* *
32769218 TGCTT-TTTTAATTTATCATATAT
1 T-ATTATTTTAATTTATCATGTAT
32769241 TATTATTTTAATT
1 TATTATTTTAATT
32769254 CCATCTATTA
Statistics
Matches: 142, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
22 21 0.15
23 50 0.35
24 49 0.35
25 7 0.05
26 13 0.09
27 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (23 bp):
TATTATTTTAATTTATCATGTAT
Found at i:32769441 original size:17 final size:17
Alignment explanation
Indices: 32769395--32769442 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
32769385 TATTTATAAA
*
32769395 ATACTATTTTTTTAATTT
1 ATACTA-TTTTTTGATTT
32769413 ATACTATTTTTTGATTT
1 ATACTATTTTTTGATTT
32769430 ATAC-ATTCTTTTG
1 ATACTATT-TTTTG
32769443 TACATTATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 3 0.11
17 19 0.68
18 6 0.21
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.62
Consensus pattern (17 bp):
ATACTATTTTTTGATTT
Found at i:32786859 original size:5 final size:5
Alignment explanation
Indices: 32786849--32786874 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32786839 AACACCCCAA
32786849 AACCC AACCC AACCC AACCC AACCC A
1 AACCC AACCC AACCC AACCC AACCC A
32786875 GAAGTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
AACCC
Found at i:32788242 original size:46 final size:44
Alignment explanation
Indices: 32788192--32788304 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 44
32788182 GCATCATTAA
* * *
32788192 ACTCATCAAAAAGCAGCAGCAGATGTGCACACATATGCGGCATTTT
1 ACTCAACAAAAA-CAGCAGCAAATGTGCACACATATGCGACA-TTT
* *
32788238 ACTCAACAAAAACAACAACAAAATGTGCACACATATGCGACATTT
1 ACTCAACAAAAACAGCAGC-AAATGTGCACACATATGCGACATTT
*
32788283 ACTCAACAAAAATAGCAGCAAA
1 ACTCAACAAAAACAGCAGCAAA
32788305 ATGTTTATTA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 3 0.05
45 24 0.41
46 31 0.53
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (44 bp):
ACTCAACAAAAACAGCAGCAAATGTGCACACATATGCGACATTT
Found at i:32788305 original size:45 final size:46
Alignment explanation
Indices: 32788192--32788308 Score: 157
Period size: 45 Copynumber: 2.6 Consensus size: 46
32788182 GCATCATTAA
* * *
32788192 ACTCATCAAAAAGCAGCAGC-AGATGTGCACACATATGCGGCATTTT
1 ACTCAACAAAAA-CAGCAGCAAAATGTGCACACATATGCGACATTTT
* *
32788238 ACTCAACAAAAACAACAACAAAATGTGCACACATATGCGACA-TTT
1 ACTCAACAAAAACAGCAGCAAAATGTGCACACATATGCGACATTTT
*
32788283 ACTCAACAAAAATAGCAGCAAAATGT
1 ACTCAACAAAAACAGCAGCAAAATGT
32788309 TTATTACAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 31 0.50
46 31 0.50
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (46 bp):
ACTCAACAAAAACAGCAGCAAAATGTGCACACATATGCGACATTTT
Found at i:32789686 original size:89 final size:89
Alignment explanation
Indices: 32789556--32789751 Score: 252
Period size: 89 Copynumber: 2.2 Consensus size: 89
32789546 TTGGCTTAAA
* * *
32789556 AAAAAAACAATTAAG-CTCTTTTTTTTTTTTCGCACTCAATTGAGCACTTGAACTTTTAAAATGT
1 AAAAAAACAATTAAGCCCCTTCTTTTTTTTTC-CACTCAATTGAGCACTTGAACTTTTAAAATGC
* * *
32789620 ATTAAAAAGACCCTTAAACTTCTTC
65 ATCAAAAAGACACTCAAACTTCTTC
* * * *
32789645 AAGAAAAGCAATTAAGCCCCTTCTTTTTTTTT-CACTCAATTGGGTACTTGAATTTTTAAAATGC
1 AA-AAAAACAATTAAGCCCCTTCTTTTTTTTTCCACTCAATTGAGCACTTGAACTTTTAAAATGC
* *
32789709 ATCAAAAAGACACTCAAATTTTTTC
65 ATCAAAAAGACACTCAAACTTCTTC
32789734 AAAAAAACAATTAAGCCC
1 AAAAAAACAATTAAGCCC
32789752 TTGCTCTTAT
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
88 15 0.16
89 52 0.57
90 12 0.13
91 13 0.14
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (89 bp):
AAAAAAACAATTAAGCCCCTTCTTTTTTTTTCCACTCAATTGAGCACTTGAACTTTTAAAATGCA
TCAAAAAGACACTCAAACTTCTTC
Found at i:32789840 original size:23 final size:24
Alignment explanation
Indices: 32789814--32789860 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
32789804 ACATTTAAAC
32789814 CTTAA-TTTTTTAAACAATAATTA
1 CTTAATTTTTTTAAACAATAATTA
32789837 CTTAATTTTTTTAAACAATAATTA
1 CTTAATTTTTTTAAACAATAATTA
32789861 GTTTTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (24 bp):
CTTAATTTTTTTAAACAATAATTA
Found at i:32790073 original size:70 final size:70
Alignment explanation
Indices: 32789997--32790559 Score: 1117
Period size: 70 Copynumber: 8.0 Consensus size: 70
32789987 TTATATTTAT
32789997 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790062 TATCA
66 TATCA
32790067 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790132 TATCA
66 TATCA
32790137 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790202 TATCA
66 TATCA
32790207 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790272 TATCA
66 TATCA
32790277 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790342 TATCA
66 TATCA
32790347 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790412 TATCA
66 TATCA
32790417 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
1 CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
32790482 TATCA
66 TATCA
32790487 CCAATATTTATTTTTACTTATAACCCTTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTA
1 CCAATATTTATTTTTACTTATAACCC-TTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTA
32790552 ATATCA
65 ATATCA
32790558 CC
1 CC
32790560 CGGCTCAAAA
Statistics
Matches: 492, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
70 446 0.91
71 46 0.09
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.46
Consensus pattern (70 bp):
CCAATATTTATTTTTACTTATAACCCTTTTACAATATTTTTTTTGTCGAAAAAGACTGATATTAA
TATCA
Found at i:32796542 original size:19 final size:20
Alignment explanation
Indices: 32796514--32796554 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32796504 TAATTTAAAG
*
32796514 AAAATTTTTTA-AATAAGAA
1 AAAATATTTTACAATAAGAA
*
32796533 AAAATATTTTACCATAAGAA
1 AAAATATTTTACAATAAGAA
32796553 AA
1 AA
32796555 TATTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAATATTTTACAATAAGAA
Found at i:32796554 original size:18 final size:17
Alignment explanation
Indices: 32796511--32796558 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
32796501 AAATAATTTA
*
32796511 AAGAAAATTTTTTAAAT
1 AAGAAAATATTTTAAAT
*
32796528 AAGAAAAAATATTTTACCAT
1 AAG--AAAATATTTTA-AAT
32796548 AAGAAAATATT
1 AAGAAAATATT
32796559 AATTTTTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.12
18 8 0.31
19 10 0.38
20 5 0.19
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (17 bp):
AAGAAAATATTTTAAAT
Found at i:32797722 original size:26 final size:26
Alignment explanation
Indices: 32797667--32797723 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
32797657 CAAAGAGGTG
* * * *
32797667 TCGATTTGCTAGATTAGTGGTGTGGG
1 TCGATTTGCTAGATTAGCGATATGGA
*
32797693 TCGATTTGCTAGATTAGCGATATGTA
1 TCGATTTGCTAGATTAGCGATATGGA
32797719 TCGAT
1 TCGAT
32797724 CTATAGAAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.11, G:0.30, T:0.39
Consensus pattern (26 bp):
TCGATTTGCTAGATTAGCGATATGGA
Found at i:32802838 original size:20 final size:20
Alignment explanation
Indices: 32802815--32802852 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32802805 ATATTAAAAA
32802815 AATATAA-TATATAAAATATT
1 AATATAAGT-TATAAAATATT
32802835 AATATAAGTTATAAAATA
1 AATATAAGTTATAAAATA
32802853 ATCATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
AATATAAGTTATAAAATATT
Found at i:32802965 original size:20 final size:20
Alignment explanation
Indices: 32802940--32803003 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
32802930 GTTATCAAAG
32802940 ATTTAAACATATTTTCCAAT
1 ATTTAAACATATTTTCCAAT
*
32802960 ATTTAAA-A-A-TTTCCAAG
1 ATTTAAACATATTTTCCAAT
32802977 ATTTAAACATATTTTCCAAT
1 ATTTAAACATATTTTCCAAT
32802997 ATTTAAA
1 ATTTAAA
32803004 AAAATTTCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 14 0.36
18 2 0.05
19 2 0.05
20 21 0.54
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTTAAACATATTTTCCAAT
Found at i:32810828 original size:49 final size:50
Alignment explanation
Indices: 32810711--32810833 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 50
32810701 TCATTGAGGT
** ** *
32810711 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGAACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCAAGGACATGGAATGGGAACCGA
* * *
32810761 GATGAGAGGTCCC-CGTAAGACCATGTCAAGGACAT-GAATGGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCAAGGACATGGAATGGGAACCGA
**
32810809 TATGAGAACTCCCATGTAAGACCAT
1 TATGAGAGGTCCCATGTAAGACCAT
32810834 ATCTGGGATA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
48 19 0.32
49 29 0.48
50 12 0.20
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (50 bp):
TATGAGAGGTCCCATGTAAGACCATGTCAAGGACATGGAATGGGAACCGA
Found at i:32816644 original size:55 final size:50
Alignment explanation
Indices: 32816557--32816802 Score: 232
Period size: 50 Copynumber: 4.8 Consensus size: 50
32816547 ATTTGGGTAA
* * *
32816557 AGAGGTCCCATGTAAGGCCATGTCTGGAACATGGCATT-GCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
* *
32816612 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
32816662 AGAGGTCCCCA-GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGT-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
32816712 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACA-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
32816760 AAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32816803 TGTTATTATC
Statistics
Matches: 165, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.01
49 42 0.25
50 76 0.46
51 4 0.02
52 1 0.01
53 2 0.01
55 35 0.21
56 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32820156 original size:5 final size:6
Alignment explanation
Indices: 32820134--32820163 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
32820124 CTTAAGCAAG
32820134 AAAACAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAA
32820164 AGATGACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:32845119 original size:23 final size:23
Alignment explanation
Indices: 32845093--32845143 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32845083 TAAATATTAT
**
32845093 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCAAAAAATTACTAC
32845116 TGTAATATCCAAAAAATTACTAC
1 TGTAATATCCAAAAAATTACTAC
*
32845139 AGTAA
1 TGTAA
32845144 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (23 bp):
TGTAATATCCAAAAAATTACTAC
Found at i:32845328 original size:30 final size:31
Alignment explanation
Indices: 32845292--32845359 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
32845282 TTGCCCAATA
** * * *
32845292 GTAAATACTCAAAATTTGAGGGGTTAA-AGT
1 GTAAATACAAAAAATTTGAAGGATAAATAGT
32845322 GTAAATACAAAAAATTTGAAGGATAAATAGT
1 GTAAATACAAAAAATTTGAAGGATAAATAGT
32845353 GTAAATA
1 GTAAATA
32845360 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGATAAATAGT
Found at i:32853319 original size:20 final size:20
Alignment explanation
Indices: 32853294--32853332 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32853284 TGACCTTACC
*
32853294 GACCACTAATCACACCACAA
1 GACCACCAATCACACCACAA
*
32853314 GACCACCATTCACACCACA
1 GACCACCAATCACACCACA
32853333 CAATATTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.44, G:0.05, T:0.10
Consensus pattern (20 bp):
GACCACCAATCACACCACAA
Found at i:32854489 original size:13 final size:13
Alignment explanation
Indices: 32854471--32854498 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32854461 CACATAATTC
32854471 TTAAAAAGCCATA
1 TTAAAAAGCCATA
32854484 TTAAAAAGCCATA
1 TTAAAAAGCCATA
32854497 TT
1 TT
32854499 CACTTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
TTAAAAAGCCATA
Found at i:32857414 original size:16 final size:17
Alignment explanation
Indices: 32857387--32857424 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32857377 AAATTTTTCA
32857387 TTTAAGTCTTTTAAAAT
1 TTTAAGTCTTTTAAAAT
**
32857404 TTTAAGT-TTTTTTAAT
1 TTTAAGTCTTTTAAAAT
32857420 TTTAA
1 TTTAA
32857425 TAAATCTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTAAGTCTTTTAAAAT
Found at i:32861992 original size:29 final size:29
Alignment explanation
Indices: 32861913--32861997 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 29
32861903 AAATTCACAT
*
32861913 AAAAATAGGTTGAGGGCTTGTTTATGAGTA
1 AAAAATAGGTTGAGGGCTTGTTTA-GACTA
* * * *
32861943 AAAATCATAGATTAAGAGCTTATTTA-ACTA
1 AAAA--ATAGGTTGAGGGCTTGTTTAGACTA
32861973 CAAAAATAGGTTGAGGGCTTGTTTA
1 -AAAAATAGGTTGAGGGCTTGTTTA
32861998 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
29 16 0.37
30 7 0.16
31 4 0.09
32 16 0.37
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (29 bp):
AAAAATAGGTTGAGGGCTTGTTTAGACTA
Found at i:32862007 original size:29 final size:28
Alignment explanation
Indices: 32861913--32862007 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
32861903 AAATTCACAT
32861913 AAAAATAGGTTGAGGGCTTGTTTATGAGTAA
1 AAAAATAGGTTGAGGGCTTGTTTAT---TAA
* * * * * * *
32861944 AAATCATAGATTAAGAGCTTATTTAACTAC
1 AAA-AATAGGTTGAGGGCTTGTTT-ATTAA
32861974 AAAAATAGGTTGAGGGCTTGTTTATTAA
1 AAAAATAGGTTGAGGGCTTGTTTATTAA
32862002 ATAAAA
1 A-AAAA
32862008 AAGTGAGTTG
Statistics
Matches: 47, Mismatches: 14, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
28 4 0.09
29 19 0.40
30 5 0.11
31 3 0.06
32 15 0.32
33 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (28 bp):
AAAAATAGGTTGAGGGCTTGTTTATTAA
Found at i:32869327 original size:67 final size:67
Alignment explanation
Indices: 32869225--32869354 Score: 251
Period size: 67 Copynumber: 1.9 Consensus size: 67
32869215 AAAAAAAGAA
*
32869225 AGAACGAAAGAAAAGGAGGGGGAGAGATCAAAGGAAGAGAATGATGTGAGAAATTTATAATAAAA
1 AGAACGAAAGAAAAGGAGAGGGAGAGATCAAAGGAAGAGAATGATGTGAGAAATTTATAATAAAA
32869290 AG
66 AG
32869292 AGAACGAAAGAAAAGGAGAGGGAGAGATCAAAGGAAGAGAATGATGTGAGAAATTTATAATAA
1 AGAACGAAAGAAAAGGAGAGGGAGAGATCAAAGGAAGAGAATGATGTGAGAAATTTATAATAA
32869355 TTATTACAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.52, C:0.03, G:0.31, T:0.14
Consensus pattern (67 bp):
AGAACGAAAGAAAAGGAGAGGGAGAGATCAAAGGAAGAGAATGATGTGAGAAATTTATAATAAAA
AG
Found at i:32872770 original size:18 final size:18
Alignment explanation
Indices: 32872747--32872782 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32872737 ATATGCATGC
*
32872747 TTTTGATTTTTTGATTTT
1 TTTTGATTTTGTGATTTT
32872765 TTTTGATTTTGTGATTTT
1 TTTTGATTTTGTGATTTT
32872783 CAGCCCAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.14, T:0.75
Consensus pattern (18 bp):
TTTTGATTTTGTGATTTT
Found at i:32895832 original size:9 final size:9
Alignment explanation
Indices: 32895820--32895847 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32895810 TTTATCAAAT
32895820 TATTAATTG
1 TATTAATTG
32895829 TATTAATTG
1 TATTAATTG
32895838 TATTAATTG
1 TATTAATTG
32895847 T
1 T
32895848 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:32895858 original size:68 final size:66
Alignment explanation
Indices: 32895736--32895878 Score: 250
Period size: 68 Copynumber: 2.1 Consensus size: 66
32895726 AAATTAATTG
*
32895736 TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
1 TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAACAAAATCTAACATTTG
32895801 A
66 A
*
32895802 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAACAAAATCTAACATT
32895867 TGA
64 TGA
32895870 TTAGTAAAA
1 TTAGTAAAA
32895879 CAAACTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
66 26 0.36
68 46 0.64
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (66 bp):
TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAACAAAATCTAACATTTG
A
Found at i:32900150 original size:117 final size:116
Alignment explanation
Indices: 32900027--32900259 Score: 324
Period size: 117 Copynumber: 2.0 Consensus size: 116
32900017 AAAATGTCGT
* *
32900027 TACATAATTTACTTGTATACTTATTCATTGCAACAACACGATTTTTAATTACAAATTCTTAATAA
1 TACATAATTTAATTGTATACTTATTCATTGCAACAACACGATTTGTAATTACAAATTCTTAATAA
*
32900092 AATGCGTAACGATC-AAACAAGCTGTTGTTAAATGTTAAAATATTAGCAACAA
66 AATGCGTAAAGA-CAAAACAAGCTGTTG-TAAATGTTAAAATATTAGCAACAA
* * * * * *
32900144 TACATAATTTAATTTTATGCTTATTCATTGCAACAATATGATTTGTCATTGCAAATTCTTAATAA
1 TACATAATTTAATTGTATACTTATTCATTGCAACAACACGATTTGTAATTACAAATTCTTAATAA
** * *
32900209 AATTTGTAAAGACAAAATAAGTTGTTGTAAATGTTAAAATATTAGCAACAA
66 AATGCGTAAAGACAAAACAAGCTGTTGTAAATGTTAAAATATTAGCAACAA
32900260 CCTTAAAATA
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
116 25 0.25
117 77 0.75
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (116 bp):
TACATAATTTAATTGTATACTTATTCATTGCAACAACACGATTTGTAATTACAAATTCTTAATAA
AATGCGTAAAGACAAAACAAGCTGTTGTAAATGTTAAAATATTAGCAACAA
Found at i:32900288 original size:130 final size:128
Alignment explanation
Indices: 32900148--32900529 Score: 425
Period size: 124 Copynumber: 3.0 Consensus size: 128
32900138 CAACAATACA
** * *
32900148 TAATTTAATTTTATGCTTATTCATTGCAACAATATGATTTGTCATTGCAAATTCTTAATAAAATT
1 TAATTTAATTTTATGCTTATTCATTGCAATGACACGATTTGT-ATTGCAAATTCTTAATAAAATT
** *
32900213 TGTAAAGACAAAATAAGTTGTTGTAAATGTTAAAATATTAGCAACAACCTTAAAATATCGTTATG
65 TGTAAAGA-AAAATAAGTTGTTGTAAACATTAAAATATTAGCAACAACCTTAAAATATCGTTACG
* *
32900278 TAATTTAATTTTATGCTTATTCATTGCAATGACACAATTTGTTATTGCAAATTCTCAATAAAATT
1 TAATTTAATTTTATGCTTATTCATTGCAATGACACGATTTG-TATTGCAAATTCTTAATAAAATT
* * * * ****
32900343 TGTAAGGAAAAA-CA--TG-T-TAAACATTAAAATATTAACAACAACCTTAAAATTTTAAGACG
65 TGTAAAGAAAAATAAGTTGTTGTAAACATTAAAATATTAGCAACAACCTTAAAATATCGTTACG
* * * * ** *
32900402 TAATTTAATTTTCTGCTTATTAATAGTAATGACACGATTTGTAGTTGTGAATTATTAATAAAATT
1 TAATTTAATTTTATGCTTATTCATTGCAATGACACGATTTGTA-TTGCAAATTCTTAATAAAATT
* *
32900467 TGTAACA-ATAAAATAAGTTATTGTTAAACATTAAAATATTAGCAACAACCTTAAAATGTCGTT
65 TGTAA-AGA-AAAATAAGTTGTTG-TAAACATTAAAATATTAGCAACAACCTTAAAATATCGTT
32900530 GATTTGATAT
Statistics
Matches: 207, Mismatches: 35, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
123 2 0.01
124 92 0.44
125 5 0.02
126 3 0.01
128 2 0.01
129 5 0.02
130 64 0.31
131 34 0.16
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (128 bp):
TAATTTAATTTTATGCTTATTCATTGCAATGACACGATTTGTATTGCAAATTCTTAATAAAATTT
GTAAAGAAAAATAAGTTGTTGTAAACATTAAAATATTAGCAACAACCTTAAAATATCGTTACG
Found at i:32902103 original size:25 final size:25
Alignment explanation
Indices: 32902075--32902181 Score: 117
Period size: 25 Copynumber: 4.3 Consensus size: 25
32902065 AACAGGACAG
32902075 AGCAGAGCAGAACA-ACACAAAACAA
1 AGCAGAGCAGAACAGA-ACAAAACAA
* * * *
32902100 AGCAAAGTAGAACAGAACAGAACAG
1 AGCAGAGCAGAACAGAACAAAACAA
* *
32902125 AGCAAAGCAGAACATAACAAAACAA
1 AGCAGAGCAGAACAGAACAAAACAA
* * *
32902150 AGCAGAGCATAACAGAACAGAACTA
1 AGCAGAGCAGAACAGAACAAAACAA
32902175 AGCAGAG
1 AGCAGAG
32902182 GATGTGTGTT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
25 67 0.99
26 1 0.01
ACGTcount: A:0.57, C:0.20, G:0.20, T:0.04
Consensus pattern (25 bp):
AGCAGAGCAGAACAGAACAAAACAA
Found at i:32902116 original size:5 final size:5
Alignment explanation
Indices: 32902108--32902172 Score: 53
Period size: 5 Copynumber: 13.0 Consensus size: 5
32902098 AAAGCAAAGT
* * * *
32902108 AGAAC AGAAC AGAAC AGAGC A-AAGC AGAAC ATAAC AAAAC A-AAGC AGAGC
1 AGAAC AGAAC AGAAC AGAAC AGAA-C AGAAC AGAAC AGAAC AGAA-C AGAAC
*
32902158 ATAAC AGAAC AGAAC
1 AGAAC AGAAC AGAAC
32902173 TAAGCAGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
4 3 0.06
5 42 0.88
6 3 0.06
ACGTcount: A:0.58, C:0.20, G:0.18, T:0.03
Consensus pattern (5 bp):
AGAAC
Found at i:32902118 original size:50 final size:50
Alignment explanation
Indices: 32902062--32902172 Score: 161
Period size: 50 Copynumber: 2.2 Consensus size: 50
32902052 ACAACCCAAC
* * *
32902062 CAGAACAGGACAGAGCAGAGCAGAACA-ACACAAAACAAAGCAAAGTAGAA
1 CAGAACAGAACAGAGCAAAGCAGAACATA-ACAAAACAAAGCAAAGCAGAA
* *
32902112 CAGAACAGAACAGAGCAAAGCAGAACATAACAAAACAAAGCAGAGCATAA
1 CAGAACAGAACAGAGCAAAGCAGAACATAACAAAACAAAGCAAAGCAGAA
32902162 CAGAACAGAAC
1 CAGAACAGAAC
32902173 TAAGCAGAGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 54 0.98
51 1 0.02
ACGTcount: A:0.57, C:0.21, G:0.20, T:0.03
Consensus pattern (50 bp):
CAGAACAGAACAGAGCAAAGCAGAACATAACAAAACAAAGCAAAGCAGAA
Found at i:32902135 original size:20 final size:20
Alignment explanation
Indices: 32902112--32902168 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
32902102 CAAAGTAGAA
* *
32902112 CAGAACAGAACAGAGCAAAG
1 CAGAACATAACAGAACAAAG
*
32902132 CAGAACATAACAAAACAAAG
1 CAGAACATAACAGAACAAAG
*
32902152 CAGAGCATAACAGAACA
1 CAGAACATAACAGAACA
32902169 GAACTAAGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.58, C:0.21, G:0.18, T:0.04
Consensus pattern (20 bp):
CAGAACATAACAGAACAAAG
Found at i:32903720 original size:131 final size:129
Alignment explanation
Indices: 32903371--32903839 Score: 398
Period size: 131 Copynumber: 3.6 Consensus size: 129
32903361 GATACGACTA
* * * ** * *
32903371 AAATTCTTAATAAAATTTATAAAGACAAAATAGGTTGTTG-TAAATGTTAAAATATTAGAAAAAA
1 AAATTCTTAAT-AAATTTGTAAAGACAAAATAAGTTATTGTTAAACATTAAAATATTAGCAACAA
* * * * * ** * * *
32903435 CCTTAAAATATTGTTATGAAATTTAATTTTATGCTTATTCGTTGCAATGACACAATTTGTCATTG
65 CCTTAAAATGTCGTTA-GTAATTTAATTTTCTACTTATTAATAGCAATAACACGATTTGTCATTG
*
32903500 C
129 T
* * * * ** *
32903501 AAATTCTTAAAAAAAGTTGTAACGA-AAAA-ACG-GGTTGTTAAACATTAAAATCTTAGCAACAA
1 AAATTCTT-AATAAATTTGTAAAGACAAAATAAGTTATTGTTAAACATTAAAATATTAGCAACAA
* * * * *
32903563 CCTTAAAATATTGATAAGTAATTTAATTTTCTGCTTATTAATAGCAATGAA-ATGATTTGT-AGT
65 CCTTAAAATGTCG-TTAGTAATTTAATTTTCTACTTATTAATAGCAAT-AACACGATTTGTCA-T
32903626 TGT
127 TGT
* * * *
32903629 GAATTAC-TAATAAAATTTGTAACA-A-TAAATAATTTATTGTTAAACGTTAAAAATATTAGCAA
1 AAATT-CTTAAT-AAATTTGTAA-AGACAAAATAAGTTATTGTTAAACATT-AAAATATTAGCAA
* * *
32903691 CAACCTTAAAATGTCGTTAGCTATTTTAATTTTCTACTTATTAGTTGCAATAACACGATTTGTCA
62 CAACCTTAAAATGTCGTTAG-TAATTTAATTTTCTACTTATTAATAGCAATAACACGATTTGTCA
32903756 TTGT
126 TTGT
* * *
32903760 AAATTCTTAATAAGTTTGTAAATGACAAAATGAGTTATTGTTAAACATTAAAATATTAACAACAA
1 AAATTCTTAATAAATTTGTAAA-GACAAAATAAGTTATTGTTAAACATTAAAATATTAGCAACAA
*
32903825 CTTTAAAATGTCGTT
65 CCTTAAAATGTCGTT
32903840 GATTTGATAT
Statistics
Matches: 273, Mismatches: 48, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
127 7 0.03
128 88 0.32
129 10 0.04
130 44 0.16
131 104 0.38
132 20 0.07
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.38
Consensus pattern (129 bp):
AAATTCTTAATAAATTTGTAAAGACAAAATAAGTTATTGTTAAACATTAAAATATTAGCAACAAC
CTTAAAATGTCGTTAGTAATTTAATTTTCTACTTATTAATAGCAATAACACGATTTGTCATTGT
Found at i:32906669 original size:25 final size:25
Alignment explanation
Indices: 32906624--32906840 Score: 145
Period size: 25 Copynumber: 8.7 Consensus size: 25
32906614 CCCATTTTTA
* *
32906624 GCTCTTATGAGCATT-CTGATAATTG
1 GCTCTCATGAGC-TTCCCGATAATTG
* * *
32906649 ACTCTCATGAGCTTCCCGATACTAG
1 GCTCTCATGAGCTTCCCGATAATTG
* * * * *
32906674 GCTCTCACGAGCTTCTCGTTATTTA
1 GCTCTCATGAGCTTCCCGATAATTG
* * **
32906699 GCTCTTATGAGCATATCGAT-ATATG
1 GCTCTCATGAGCTTCCCGATAAT-TG
* * *
32906724 GCTCTCTTGAGCTTCCCGTTATTTG
1 GCTCTCATGAGCTTCCCGATAATTG
* *
32906749 GCTCTCACGAGCTTCTCGATAATTG
1 GCTCTCATGAGCTTCCCGATAATTG
* **
32906774 GCTCTCATGAGCTTACTAATTAA-TG
1 GCTCTCATGAGCTTCCCGA-TAATTG
** *
32906799 GCTCTCCGGAGCTTCCTGAT-ATTG
1 GCTCTCATGAGCTTCCCGATAATTG
*
32906823 GCTCGCATGAGCTTCCCG
1 GCTCTCATGAGCTTCCCG
32906841 TTATATGGCT
Statistics
Matches: 143, Mismatches: 44, Indels: 11
0.72 0.22 0.06
Matches are distributed among these distances:
23 1 0.01
24 20 0.14
25 118 0.83
26 4 0.03
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATAATTG
Found at i:32906752 original size:75 final size:75
Alignment explanation
Indices: 32906620--32906785 Score: 219
Period size: 75 Copynumber: 2.2 Consensus size: 75
32906610 GTGTCCCATT
32906620 TTTAGCTCTTATGAGCATTCTGATAATTGACTCTCATGAGCTTCCCGATACTAGGCTCTCACGAG
1 TTTAGCTCTTATGAGCATTCTGATAATTGACTCTCATGAGCTTCCCGATACTAGGCTCTCACGAG
*
32906685 CTTCTCGTTA
66 CTTCTCGATA
* * * * *
32906695 TTTAGCTCTTATGAGCATATC-GAT-ATATGGCTCTCTTGAGCTTCCCGTTATTTGGCTCTCACG
1 TTTAGCTCTTATGAGCAT-TCTGATAAT-TGACTCTCATGAGCTTCCCGATACTAGGCTCTCACG
32906758 AGCTTCTCGATA
64 AGCTTCTCGATA
* * *
32906770 ATTGGCTCTCATGAGC
1 TTTAGCTCTTATGAGC
32906786 TTACTAATTA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
74 2 0.03
75 76 0.95
76 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.37
Consensus pattern (75 bp):
TTTAGCTCTTATGAGCATTCTGATAATTGACTCTCATGAGCTTCCCGATACTAGGCTCTCACGAG
CTTCTCGATA
Found at i:32906800 original size:75 final size:74
Alignment explanation
Indices: 32906650--32906837 Score: 200
Period size: 75 Copynumber: 2.5 Consensus size: 74
32906640 TGATAATTGA
* * * *
32906650 CTCTCATGAGCTTCCCGATACTAGGCTCTCACGAGCTTCTCGTTATTTAGCTCTTATGAGCATAT
1 CTCTCATGAGCTTCCCGATA-TTGGCTCTCACGAGCTTCTCGATAATTAGCTCTCATGAGCATAT
*
32906715 CGATATATGG
65 CAATATATGG
* * * *
32906725 CTCTCTTGAGCTTCCCGTTATTTGGCTCTCACGAGCTTCTCGATAATTGGCTCTCATGAGCTTA-
1 CTCTCATGAGCTTCCCGATA-TTGGCTCTCACGAGCTTCTCGATAATTAGCTCTCATGAGCATAT
32906789 CTAAT-TAATGG
65 C-AATAT-ATGG
** * * *
32906800 CTCTCCGGAGCTTCCTGATATTGGCTCGCATGAGCTTC
1 CTCTCATGAGCTTCCCGATATTGGCTCTCACGAGCTTC
32906838 CCGTTATATG
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
74 18 0.19
75 77 0.81
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.35
Consensus pattern (74 bp):
CTCTCATGAGCTTCCCGATATTGGCTCTCACGAGCTTCTCGATAATTAGCTCTCATGAGCATATC
AATATATGG
Found at i:32906857 original size:25 final size:25
Alignment explanation
Indices: 32906807--32906876 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
32906797 TGGCTCTCCG
* * **
32906807 GAGCTTCCTGATAT-TGGCTCGCAT
1 GAGCTTCCCGTTATATGGCTCAAAT
32906831 GAGCTTCCCGTTATATGGCTCAAAT
1 GAGCTTCCCGTTATATGGCTCAAAT
*
32906856 GAACTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTATATGGCTC
32906877 GGAAGAGGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 12 0.30
25 28 0.70
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCAAAT
Found at i:32906888 original size:25 final size:25
Alignment explanation
Indices: 32906807--32906888 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
32906797 TGGCTCTCCG
* * * *
32906807 GAGCTTCCTGATAT-TGGCTCGCAT
1 GAGCTTCCCGTTATATGGCTCGAAA
32906831 GAGCTTCCCGTTATATGGCTC-AAA
1 GAGCTTCCCGTTATATGGCTCGAAA
* *
32906855 TGAACTTCCCGTTATATGGCTCGGAA
1 -GAGCTTCCCGTTATATGGCTCGAAA
*
32906881 GAGGTTCC
1 GAGCTTCC
32906889 TGTTTACATG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
24 13 0.28
25 32 0.68
26 2 0.04
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.30
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGAAA
Found at i:32906932 original size:41 final size:41
Alignment explanation
Indices: 32906875--32906952 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
32906865 GTTATATGGC
*
32906875 TCGGAAGAGGTTCCTGTTTACATGCTCATATGAGCATACTG
1 TCGGAAGAGCTTCCTGTTTACATGCTCATATGAGCATACTG
32906916 TCGGAAGAGCTTCCTGTTTACATGCTCATATGAGCAT
1 TCGGAAGAGCTTCCTGTTTACATGCTCATATGAGCAT
32906953 TCCTGAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
TCGGAAGAGCTTCCTGTTTACATGCTCATATGAGCATACTG
Found at i:32909400 original size:70 final size:70
Alignment explanation
Indices: 32909301--32909456 Score: 206
Period size: 70 Copynumber: 2.2 Consensus size: 70
32909291 AGTTTATCTA
* * *
32909301 ACTAGTGCTGGGCACAATTACTGTCAGTTATCTGACTAGCACTAGGTGCAAAAAATTGTTGACTC
1 ACTAGTGTTGGGCACAACTACTGTCAGTTATCTGACTAGCACTAGGTGCAAAAAATTGTTGACTA
32909366 GTTTG
66 GTTTG
* * ** * * *
32909371 ACTAGTGTTGGGCACAACTA-TCGTTAGTTATTTGACTAGTGCTGGGTGCAATAATTTGTTGACT
1 ACTAGTGTTGGGCACAACTACT-GTCAGTTATCTGACTAGCACTAGGTGCAAAAAATTGTTGACT
32909435 AGTTTG
65 AGTTTG
32909441 ACTAGTGTTGGGCACA
1 ACTAGTGTTGGGCACA
32909457 CAAATGATTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
69 1 0.01
70 74 0.99
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (70 bp):
ACTAGTGTTGGGCACAACTACTGTCAGTTATCTGACTAGCACTAGGTGCAAAAAATTGTTGACTA
GTTTG
Found at i:32912335 original size:33 final size:34
Alignment explanation
Indices: 32912263--32912353 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 34
32912253 ATTGACGGAT
* * * *
32912263 AAGACCATGGTTGGACCATGGCAATGTTTAAATGT
1 AAGACCATAGTTGGGCTATGGC-ATGTTTAAATGA
32912298 AAGACCATAGTTGGGCTATGGCAT-TTT-AATGAA
1 AAGACCATAGTTGGGCTATGGCATGTTTAAATG-A
** *
32912331 AAGACCATAACTGGGTTATGGCA
1 AAGACCATAGTTGGGCTATGGCA
32912354 CCTTGAACGT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 4 0.08
33 23 0.48
34 2 0.04
35 19 0.40
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (34 bp):
AAGACCATAGTTGGGCTATGGCATGTTTAAATGA
Found at i:32912440 original size:105 final size:101
Alignment explanation
Indices: 32912262--32912447 Score: 266
Period size: 105 Copynumber: 1.8 Consensus size: 101
32912252 AATTGACGGA
* *
32912262 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGTTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGTTGGGCTATGGCATTCTAA
32912327 TGAAAAGACCATAACTGGGTTATGGCACCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCACCTTGAACG
* *
32912363 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGATCATAGTTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAGTTGGGCTATGGCAT
* *
32912427 TCTGATGATAAGACCATAACT
61 TCTAATGAAAAGACCATAACT
32912448 AAGTTATGAC
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
101 24 0.32
103 4 0.05
104 2 0.03
105 44 0.59
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGTTGGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGGCACCTTGAACG
Found at i:32912488 original size:105 final size:99
Alignment explanation
Indices: 32912295--32912524 Score: 237
Period size: 105 Copynumber: 2.3 Consensus size: 99
32912285 AATGTTTAAA
* ** * **
32912295 TGTAAGACCATAGTTGGGCTATGGCATTTTAATGAAAAGACCATAACTGGGTTATGGCACCTTGA
1 TGTAAGACCATAGTTGGGCTATGGCATTCTAATGAAAAGACCATAACTAAGTTATGACACCTCAA
* *** *
32912360 ACGTAAGACCATGGTTGGACCATGGCAGTATAGATACATG
66 ACGTAAAACCATGACAGGACCATGACA--AT-G---CATG
* * *
32912400 TGTAAGATCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTAAGTTATGACA-CTACA
1 TGTAAGACCATAGTTGGGCTATGGCATTCTAATGAAAAGACCATAACTAAGTTATGACACCT-CA
* *
32912464 AATGTAAAACCATGACAGGGCCATGACAATGCATG
65 AACGTAAAACCATGACAGGACCATGACAATGCATG
*
32912499 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGTTGGGCTATGGCA
32912525 CAAAAAGAAC
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
99 28 0.26
102 1 0.01
103 2 0.02
104 2 0.02
105 73 0.69
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (99 bp):
TGTAAGACCATAGTTGGGCTATGGCATTCTAATGAAAAGACCATAACTAAGTTATGACACCTCAA
ACGTAAAACCATGACAGGACCATGACAATGCATG
Found at i:32914497 original size:4 final size:4
Alignment explanation
Indices: 32914488--32914522 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
32914478 ACGTTATCAA
32914488 TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TAT
32914523 ATAGTTCGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Found at i:32915265 original size:33 final size:33
Alignment explanation
Indices: 32915218--32915284 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
32915208 GTTTTGGTGA
32915218 TGTAAACCTTATTTTTGCCAATTTAAACTTCGT
1 TGTAAACCTTATTTTTGCCAATTTAAACTTCGT
*
32915251 TGTACACCTTATTTTTGCCAATTTAAACTTCGT
1 TGTAAACCTTATTTTTGCCAATTTAAACTTCGT
32915284 T
1 T
32915285 ATTGTTTAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.46
Consensus pattern (33 bp):
TGTAAACCTTATTTTTGCCAATTTAAACTTCGT
Done.