Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 104 of 161
Found at i:32919408 original size:136 final size:136
Alignment explanation
Indices: 32919210--32919480 Score: 452
Period size: 136 Copynumber: 2.0 Consensus size: 136
32919200 ACAAAATACT
*
32919210 CAACATCAATCGGGTGGCGCTCCTCTATACTTCATAAAAAATATGCGTCCAAAGTACTCATGACC
1 CAACATCAATCGGGTGGCGCTCCTCCATACTTCATAAAAAATATGCGTCCAAAGTACTCATGACC
*
32919275 CCCGTGCTTTCTTTTCGACTCGTCACTGTGTGTGCCAATATGGCATAGATGTATCGTAAAGCAGG
66 CCCGTGCTTTCTTTTCGACTCGTCACTGTGTGTGCCAATATGGCATAGATGTATCGTAAAACAGG
32919340 GGTAGG
131 GGTAGG
* * *
32919346 CAACATCAATTGGGTGGTGCTCTTCCATACTTCATAAAAAATATGCGTCCAAAGTACTCATGACC
1 CAACATCAATCGGGTGGCGCTCCTCCATACTTCATAAAAAATATGCGTCCAAAGTACTCATGACC
* * * * *
32919411 CCTGTTCTTTCTTTTTGTCTCGTCACTGTGTGTGCCAATATGGCATGGATGTATCGTAAAACAGG
66 CCCGTGCTTTCTTTTCGACTCGTCACTGTGTGTGCCAATATGGCATAGATGTATCGTAAAACAGG
32919476 GGTAG
131 GGTAG
32919481 ACATGTGGCT
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 125 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (136 bp):
CAACATCAATCGGGTGGCGCTCCTCCATACTTCATAAAAAATATGCGTCCAAAGTACTCATGACC
CCCGTGCTTTCTTTTCGACTCGTCACTGTGTGTGCCAATATGGCATAGATGTATCGTAAAACAGG
GGTAGG
Found at i:32922094 original size:38 final size:38
Alignment explanation
Indices: 32922040--32922146 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
32922030 TTCAAATGAT
* * *
32922040 GTGTTATTCAGCCTTAGTGCCTAGCAGGCTTAGTACCA
1 GTGTTAATCAGGCTTAGTGCCTAGCAGGCTTAATACCA
* * * * ** *
32922078 GTGTTACTCAGGCTTAGTGCTTAACAAGCTTAATGTCG
1 GTGTTAATCAGGCTTAGTGCCTAGCAGGCTTAATACCA
*
32922116 GTGTTAATCAAGCTTAGTGCCTAGCAGGCTT
1 GTGTTAATCAGGCTTAGTGCCTAGCAGGCTT
32922147 TGAGTCGATA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
GTGTTAATCAGGCTTAGTGCCTAGCAGGCTTAATACCA
Found at i:32936933 original size:17 final size:17
Alignment explanation
Indices: 32936907--32936946 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
32936897 ACGAAATTAA
*
32936907 AATTTGATTGAGAAAAT
1 AATTTAATTGAGAAAAT
*
32936924 AATTTAATTGAGAAATT
1 AATTTAATTGAGAAAAT
32936941 AATTTA
1 AATTTA
32936947 TCTAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (17 bp):
AATTTAATTGAGAAAAT
Found at i:32937025 original size:13 final size:13
Alignment explanation
Indices: 32937007--32937034 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32936997 ATTGAGTTAG
32937007 ATTAAATTATAAA
1 ATTAAATTATAAA
32937020 ATTAAATTATAAA
1 ATTAAATTATAAA
32937033 AT
1 AT
32937035 GCAGGGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTAAATTATAAA
Found at i:32942780 original size:53 final size:53
Alignment explanation
Indices: 32942711--32942888 Score: 209
Period size: 53 Copynumber: 3.4 Consensus size: 53
32942701 ATAACATTAT
32942711 AAGACCATATCT-TGTAAGACCATAACTAGTGGGTTATGGCATCATATGGGAAG
1 AAGACCATAT-TGTGTAAGACCATAACTAGTGGGTTATGGCATCATATGGGAAG
* * *
32942764 AAGACCATATTGTGTAAAACTATAAC-AGGTGGGTTATGACATCATATGGGAAG
1 AAGACCATATTGTGTAAGACCATAACTA-GTGGGTTATGGCATCATATGGGAAG
* * * * * *
32942817 AACACCAAATTGTATAAGACCGTAACT-GAAGGGTTATGGCATCATATAGGAAG
1 AAGACCATATTGTGTAAGACCATAACTAG-TGGGTTATGGCATCATATGGGAAG
**
32942870 AAGACCATATCATGTAAGA
1 AAGACCATATTGTGTAAGA
32942889 TCGTAACTGG
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 3 0.03
53 101 0.97
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (53 bp):
AAGACCATATTGTGTAAGACCATAACTAGTGGGTTATGGCATCATATGGGAAG
Found at i:32942906 original size:53 final size:53
Alignment explanation
Indices: 32942711--32942922 Score: 208
Period size: 53 Copynumber: 4.0 Consensus size: 53
32942701 ATAACATTAT
* * * *
32942711 AAGACCATATCTTGTAAGACCATAACTAGTGGGTTATGGCATCATATGGGAAG
1 AAGACCATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAGGAAG
* * * * *
32942764 AAGACCATATTGTGTAAAACTATAACAGGTGGGTTATGACATCATATGGGAAG
1 AAGACCATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAGGAAG
* * * * * ** *
32942817 AACACCAAATTGTATAAGACCGTAACTGAAGGGTTATGGCATCATATAGGAAG
1 AAGACCATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAGGAAG
* * * * * * *
32942870 AAGACCATATCATGTAAGATCGTAACTGGCGAGTTATAACATTATATAGGAAG
1 AAGACCATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAGGAAG
32942923 GACTAAAGGA
Statistics
Matches: 129, Mismatches: 30, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
53 129 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (53 bp):
AAGACCATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAGGAAG
Found at i:32943138 original size:61 final size:61
Alignment explanation
Indices: 32943041--32943200 Score: 187
Period size: 61 Copynumber: 2.6 Consensus size: 61
32943031 GAAAAAAGAC
* * * **
32943041 ACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCGAGTATTAGATGTAAAGGACT
1 ACCTTTGTGGCAAAACTCTAGACAGGAAAGCATTTGTGACGAGTACTAGATGTAAAGGAAA
* * *
32943102 ACCTTTGTGGTAAAACAT-TGGATAGGAAAGCATTTGTGACGAGTACTAGATGTAAAGGAAA
1 ACCTTTGTGGCAAAAC-TCTAGACAGGAAAGCATTTGTGACGAGTACTAGATGTAAAGGAAA
** * * *
32943163 ACCTTTGTGGCGGAACTCTAGAAAGGTAAGCCTTTGTG
1 ACCTTTGTGGCAAAACTCTAGACAGGAAAGCATTTGTG
32943201 GCAACCTCTG
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
60 1 0.01
61 80 0.98
62 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (61 bp):
ACCTTTGTGGCAAAACTCTAGACAGGAAAGCATTTGTGACGAGTACTAGATGTAAAGGAAA
Found at i:32948668 original size:207 final size:208
Alignment explanation
Indices: 32948323--32948741 Score: 725
Period size: 207 Copynumber: 2.0 Consensus size: 208
32948313 CAAATATTGT
* *
32948323 CTTTATTTTCATTTATTAGAAAAATCCTCGCCTCGAGAAAACAACATGCCATATCCAATGCGTTA
1 CTTTATTTTCATTTATTAGAAAAATCCACACCTCGAGAAAACAACATGCCATATCCAATGCGTTA
*
32948388 GGACACAACAAGTCGAATTCCCATGAATGAGCTCTTTATTTATGTCTTAATTTAAAGAGATATTC
66 GGACACAACAAGTCGAATTCCCATGAATGAGCTCTTTATTTATGTCTTAACTTAAAGAGATATTC
* *
32948453 TCGATTATTTAGATTCGACGAGGAAAATTGGAATCCAATACGTTAGGGCTTAATTTTTCGAAGAT
131 TCGATTATTTAGATTCGACGAGGAAAATTGGAACCCAATACGTTAGGGCTCAATTTTTCGAAGAT
*
32948518 TCCAAATATCGAA
196 TCCAAATACCGAA
*
32948531 CTTTA-TTTCATTTATTAGAAAAATCCACACCTCGAGAAAACAACATGTCATATCCAATGCGTTA
1 CTTTATTTTCATTTATTAGAAAAATCCACACCTCGAGAAAACAACATGCCATATCCAATGCGTTA
** *
32948595 GGACACAATGAGTCGAATTCACGA-GAATGAGCTCTTTATTTATGTCTTAACTTAAAGAGATATT
66 GGACACAACAAGTCGAATTC-CCATGAATGAGCTCTTTATTTATGTCTTAACTTAAAGAGATATT
32948659 CTCGATTATTTAGATTCGACGAGGAAAATTGGAACCCAATACGTTAGGGCTCAATTTTTCGAAGA
130 CTCGATTATTTAGATTCGACGAGGAAAATTGGAACCCAATACGTTAGGGCTCAATTTTTCGAAGA
32948724 TTCCAAATACCGAA
195 TTCCAAATACCGAA
32948738 CTTT
1 CTTT
32948742 GCGTTATCTT
Statistics
Matches: 200, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
207 193 0.96
208 7 0.04
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (208 bp):
CTTTATTTTCATTTATTAGAAAAATCCACACCTCGAGAAAACAACATGCCATATCCAATGCGTTA
GGACACAACAAGTCGAATTCCCATGAATGAGCTCTTTATTTATGTCTTAACTTAAAGAGATATTC
TCGATTATTTAGATTCGACGAGGAAAATTGGAACCCAATACGTTAGGGCTCAATTTTTCGAAGAT
TCCAAATACCGAA
Found at i:32950381 original size:16 final size:14
Alignment explanation
Indices: 32950344--32950372 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32950334 ACATTTCCAT
32950344 TCTATTTTTTTCTA
1 TCTATTTTTTTCTA
32950358 TCTATTTTTTTCTA
1 TCTATTTTTTTCTA
32950372 T
1 T
32950373 TGCTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTATTTTTTTCTA
Found at i:32952554 original size:44 final size:44
Alignment explanation
Indices: 32952195--32952618 Score: 238
Period size: 44 Copynumber: 9.7 Consensus size: 44
32952185 CTTGATGCGA
* * * * *
32952195 TCTGCTCTACTGTAACTTCAGAGAGATAAGATCTAT-TACTTTAA
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGAT-TATCTTCTTCAG
* ** ** *
32952239 TCCGCTCCACTACAACTTCAGGGAGAT-AGAATTATCGACTTCAA
1 TCTGCTCCACTGTAACTTCAGGGAGATAAG-ATTATCTTCTTCAG
* * * *
32952283 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTCTTCTTCCG
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTATCTTCTTCAG
* * * * *
32952327 TCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTT-AG
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGA-TTATCTTCTTCAG
* * * * * ** *
32952371 TCTGCTCCACTGTGACTTTAGGAAGGTAAG---ACCTAATGC-G
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTATCTTCTTCAG
* * * * * * *
32952411 ATCCT-CTCTACTGCAACTTCAGAGAGATTAGATCTAT-TACTTTAA
1 -T-CTGCTCCACTGTAACTTCAGGGAGATAAGAT-TATCTTCTTCAG
** * ** *
32952456 TCTGCTCCACTAAAACTTCAGGGAGATAGGATTATCGACTTCAA
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTATCTTCTTCAG
* * *
32952500 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTTCTTCCG
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTATCTTCTTCAG
* * * * * * *
32952544 CCTGCCCCACTGTGACCTCAGGGGGATAAGACTTGTATTCTT-AG
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGA-TTATCTTCTTCAG
* *
32952588 TCTGCTCCACTGTGACTTCAGGGAGGTAAGA
1 TCTGCTCCACTGTAACTTCAGGGAGATAAGA
32952619 CCTGATACGA
Statistics
Matches: 288, Mismatches: 77, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
40 3 0.01
41 19 0.07
42 2 0.01
43 10 0.03
44 235 0.82
45 19 0.07
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGTAACTTCAGGGAGATAAGATTATCTTCTTCAG
Found at i:32952567 original size:217 final size:216
Alignment explanation
Indices: 32952189--32952721 Score: 868
Period size: 217 Copynumber: 2.5 Consensus size: 216
32952179 GTAATACTTG
* *
32952189 ATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCACTACAA
1 ATGCGATCT-CTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTCCACTACAA
*
32952254 CTTCAGGGAGATAGAATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTC
65 CTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTC
* * *
32952319 TTCTTCCGTCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTTAGTCTGCTCCACTGT
130 TTCTTCCGCCTGCCCCACTGTGACCTCAGGGGGATAAGACTTGTATTCTTAGTCTGCTCCACTGT
*
32952384 GACTTTAGGAAGGTAAGACCTA
195 GACTTCAGGAAGGTAAGACCTA
* *
32952406 ATGCGATCCTCTCTACTGCAACTTCAGAGAGATTAGATCTATTACTTTAATCTGCTCCACTAAAA
1 ATGCGAT-CTCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTCCACTACAA
*
32952471 CTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTC
65 CTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTC
32952536 TTCTTCCGCCTGCCCCACTGTGACCTCAGGGGGATAAGACTTGTATTCTTAGTCTGCTCCACTGT
130 TTCTTCCGCCTGCCCCACTGTGACCTCAGGGGGATAAGACTTGTATTCTTAGTCTGCTCCACTGT
* *
32952601 GACTTCAGGGAGGTAAGACCTG
195 GACTTCAGGAAGGTAAGACCTA
* * * * *
32952623 ATACGATCACTCTACTGCAACTTTAGAGAGATAAGATCTATTACTTTAATGTGTTCCACTACAAC
1 ATGCGATCTCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTCCACTACAAC
* * *
32952688 TTCAGTGAGATAGGATCATCGGCTTCAATCTGCT
66 TTCAGGGAGATAGGATTATCGACTTCAATCTGCT
32952722 TCCTTACACT
Statistics
Matches: 293, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
216 83 0.28
217 208 0.71
218 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (216 bp):
ATGCGATCTCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTCCACTACAAC
TTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTCT
TCTTCCGCCTGCCCCACTGTGACCTCAGGGGGATAAGACTTGTATTCTTAGTCTGCTCCACTGTG
ACTTCAGGAAGGTAAGACCTA
Found at i:32952871 original size:128 final size:128
Alignment explanation
Indices: 32952708--32953220 Score: 855
Period size: 128 Copynumber: 4.0 Consensus size: 128
32952698 TAGGATCATC
* *
32952708 GGCTTCAATCTGCTTCCTTACACTTGAAGATAAGATTTACCATCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGC
* *
32952773 TTAGGGAGACAAAATCTGCAATTTCTAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGT
66 TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
* * * *
32952836 GGCTTAAATTTACTTCCTTACACTTGAAAATAAGATTCACCGTCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGC
32952901 TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
66 TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
* * *
32952964 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTTGATGTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGC
*
32953029 TTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
66 TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
*
32953092 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGC
* * ** **
32953157 TTAGGGAGACAAAATCTGCAATTTCTAACCTATTCCACTGCTGCCCAGGGTTATAGGACTTGT
66 TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
32953220 G
1 G
32953221 ATTTCACTGA
Statistics
Matches: 360, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 360 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (128 bp):
GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCATCTTCGATCTGCTCCGCTACTGC
TTAGGGAGACAAAATCTGCAATTTCCAACCTATTCCACTACTGGTCAGGGACATAGGACTTGT
Found at i:32963936 original size:23 final size:23
Alignment explanation
Indices: 32963887--32963984 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 23
32963877 AGGGCATCAC
* * *
32963887 AGAATACGCCACACAA-GCATCAC
1 AGAATACGCCACA-AAGGCTTTAT
* *
32963910 AGAATACGCTAGAAAGGCTTTAT
1 AGAATACGCCACAAAGGCTTTAT
* *
32963933 AGAATATGCCACAAAGTCTTTAT
1 AGAATACGCCACAAAGGCTTTAT
32963956 AGAATACGCCACAAAGGCTTTAT
1 AGAATACGCCACAAAGGCTTTAT
32963979 AGAATA
1 AGAATA
32963985 TTATGTGTTT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 2 0.03
23 61 0.97
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.21
Consensus pattern (23 bp):
AGAATACGCCACAAAGGCTTTAT
Found at i:32974928 original size:6 final size:6
Alignment explanation
Indices: 32974919--32974976 Score: 64
Period size: 6 Copynumber: 9.2 Consensus size: 6
32974909 CTCAAAATTG
*
32974919 AAATAA AAATAGA -AATGA AAATGA AAATGA AAATGA GAAATGA GAAATGA
1 AAATGA AAAT-GA AAATGA AAATGA AAATGA AAATGA -AAATGA -AAATGA
32974969 GAAATGA A
1 -AAATGA A
32974977 TTCATTTAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
5 2 0.04
6 25 0.52
7 21 0.44
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:32974961 original size:7 final size:7
Alignment explanation
Indices: 32974925--32974975 Score: 74
Period size: 6 Copynumber: 7.9 Consensus size: 7
32974915 ATTGAAATAA
32974925 AAAT-AG
1 AAATGAG
32974931 AAATGA-
1 AAATGAG
32974937 AAATGA-
1 AAATGAG
32974943 AAATGA-
1 AAATGAG
32974949 AAATGAG
1 AAATGAG
32974956 AAATGAG
1 AAATGAG
32974963 AAATGAG
1 AAATGAG
32974970 AAATGA
1 AAATGA
32974976 ATTCATTTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.51
7 21 0.49
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.16
Consensus pattern (7 bp):
AAATGAG
Found at i:32975048 original size:26 final size:26
Alignment explanation
Indices: 32975012--32975063 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32975002 CTCAAAAATG
32975012 ATCGGAAGATTGAGTTTATGTTTTTT
1 ATCGGAAGATTGAGTTTATGTTTTTT
32975038 ATCGGAAGATTGAGTTTATGTTTTTT
1 ATCGGAAGATTGAGTTTATGTTTTTT
32975064 TAGCTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.50
Consensus pattern (26 bp):
ATCGGAAGATTGAGTTTATGTTTTTT
Found at i:32975204 original size:25 final size:26
Alignment explanation
Indices: 32975152--32975204 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
32975142 TTTTCTCGAA
* *
32975152 AATTTTATCAAGGGTAAAGTTGTCAT
1 AATTTTATCAAGGGTAAAATTGGCAT
* *
32975178 AATTTTA-CCAGGGTAAAATTGGGAT
1 AATTTTATCAAGGGTAAAATTGGCAT
32975203 AA
1 AA
32975205 GAAAATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.34
Consensus pattern (26 bp):
AATTTTATCAAGGGTAAAATTGGCAT
Found at i:32990219 original size:40 final size:40
Alignment explanation
Indices: 32990162--32990384 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
32990152 CCAGCATGAT
* *
32990162 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
32990202 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
32990242 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
32990282 TGCTCTTCGGGACTTAGCCCGAATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
32990323 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
32990363 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
32990385 CATCATTCGA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.86
41 19 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:32990370 original size:120 final size:120
Alignment explanation
Indices: 32990154--32990384 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
32990144 ACACGTCACC
* * * * *
32990154 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCACGAATATATAACTAGCACCAATGCTCTTCGGAACTTAG
* *
32990219 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
66 CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
* * * *
32990274 AGCATGAATGCTCTTCGGGACTTAGCCCGAATTTAGTAACTCGCACCAATGC-CTTCGGATCTTA
1 AGCATGAATGCTCTTCGGGACTTAGCACGAATATA-TAACTAGCACCAATGCTCTTCGGAACTTA
* **
32990338 GTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
65 GCCCGGATA-CATCAC-TAGCATCAAAGCTCTTCGGGACTTAGCCCGGA
32990385 CATCATTCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 21 0.22
122 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AGCATGAATGCTCTTCGGGACTTAGCACGAATATATAACTAGCACCAATGCTCTTCGGAACTTAG
CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
Found at i:32990729 original size:29 final size:29
Alignment explanation
Indices: 32990690--32990768 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32990680 CTTAATAATC
*
32990690 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32990720 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32990749 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32990769 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32990816 original size:43 final size:43
Alignment explanation
Indices: 32990755--32990852 Score: 178
Period size: 43 Copynumber: 2.3 Consensus size: 43
32990745 TTCAAGCCCG
*
32990755 CACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCAA
1 CACACTTAGTGCCAATCTCACAACCATGAACACTTATTGCCAA
*
32990798 CACACTTAGTGCCAATCTCACAACCATGAACACTTATTGCCCA
1 CACACTTAGTGCCAATCTCACAACCATGAACACTTATTGCCAA
32990841 CACACTTAGTGC
1 CACACTTAGTGC
32990853 TGAAAACCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.23
Consensus pattern (43 bp):
CACACTTAGTGCCAATCTCACAACCATGAACACTTATTGCCAA
Found at i:32995371 original size:60 final size:60
Alignment explanation
Indices: 32995302--32995414 Score: 217
Period size: 60 Copynumber: 1.9 Consensus size: 60
32995292 TGCAACTCGG
32995302 TTTAGCGGTCCCAAAACCACTTCCCGACTAGGGTCAAATTAGGGGTGTCACAACTCTTCA
1 TTTAGCGGTCCCAAAACCACTTCCCGACTAGGGTCAAATTAGGGGTGTCACAACTCTTCA
*
32995362 TTTAGCGGTCCCGAAACCACTTCCCGACTAGGGTCAAATTAGGGGTGTCACAA
1 TTTAGCGGTCCCAAAACCACTTCCCGACTAGGGTCAAATTAGGGGTGTCACAA
32995415 AATCTAGGTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (60 bp):
TTTAGCGGTCCCAAAACCACTTCCCGACTAGGGTCAAATTAGGGGTGTCACAACTCTTCA
Found at i:33007105 original size:110 final size:112
Alignment explanation
Indices: 33006742--33007164 Score: 679
Period size: 112 Copynumber: 3.8 Consensus size: 112
33006732 ATATTTGGCT
* * * *
33006742 ATTTGGTTAAACGAGAAATATCGACACCCAGCCCCTTAGGGCACGTTTTCTCGAATTTCCCAAAT
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
33006807 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
66 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
*
33006854 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAT
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
33006919 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
66 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
* *
33006966 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTTCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
** * * * *
33007031 GCAAAACATTGCCTT-TTT-TGAAAATTTTTAAAAAGATATTTAGCC
66 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
* * *
33007076 ATTTGGTTGAATGAGAAAAATCGACACCCAGTACCTTAGGGCACGTTTTCTCAAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
*
33007141 GCAAAACATTGCCTTATTTGAAAA
66 GCAAAACATTGCCTTATTTCAAAA
33007165 TTTTTGTTTT
Statistics
Matches: 290, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
110 96 0.33
111 6 0.02
112 188 0.65
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (112 bp):
ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAAC
GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCC
Found at i:33007137 original size:222 final size:224
Alignment explanation
Indices: 33006742--33007164 Score: 679
Period size: 222 Copynumber: 1.9 Consensus size: 224
33006732 ATATTTGGCT
* * * *
33006742 ATTTGGTTAAACGAGAAATATCGACACCCAGCCCCTTAGGGCACGTTTTCTCGAATTTCCCAAAT
1 ATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
*
33006807 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAGGATAGTTACCCATTTGGTTGAACGAGAAA
66 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAAGATAGTTACCCATTTGGTTGAACGAGAAA
* *
33006872 AATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAATGCAAAACATTGCCTTATT
131 AATCGACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCCAAACGCAAAACATTGCCTTATT
33006937 TCAAAAAAATTTTAAAAGGATAGTTACCC
196 TCAAAAAAATTTTAAAAGGATAGTTACCC
* *
33006966 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTTCCAAAC
1 ATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
** * * * *
33007031 GCAAAACATTGCCTT-TTT-TGAAAATTTTTAAAAAGATATTTAGCCATTTGGTTGAATGAGAAA
66 GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAAGATAGTTACCCATTTGGTTGAACGAGAAA
*
33007094 AATCGACACCCAGTACCTTAGGGCACGTTTTCTCAAATTTCCCAAACGCAAAACATTGCCTTATT
131 AATCGACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCCAAACGCAAAACATTGCCTTATT
*
33007159 TGAAAA
196 TCAAAA
33007165 TTTTTGTTTT
Statistics
Matches: 182, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
222 105 0.58
223 3 0.02
224 74 0.41
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (224 bp):
ATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAAC
GCAAAACATTGCCTTATTTCAAAAAAATTTTAAAAAGATAGTTACCCATTTGGTTGAACGAGAAA
AATCGACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCCAAACGCAAAACATTGCCTTATT
TCAAAAAAATTTTAAAAGGATAGTTACCC
Found at i:33007681 original size:30 final size:29
Alignment explanation
Indices: 33007646--33007702 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
33007636 ATAAAGTTTA
*
33007646 AAATAAAGATATAAATAAGCAAAAAAAACT
1 AAATAAAGAAATAAATAAG-AAAAAAAACT
* *
33007676 AAATAAATAAATAAATAAGATAAAAAA
1 AAATAAAGAAATAAATAAGAAAAAAAA
33007703 GGGTTTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.18
Consensus pattern (29 bp):
AAATAAAGAAATAAATAAGAAAAAAAACT
Found at i:33009364 original size:43 final size:43
Alignment explanation
Indices: 33009298--33009397 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
33009288 CTCAGCTATA
*
33009298 ACTTCAGGGAGATAGGATTGGTTTCTTCTATCTACTCCACTACT
1 ACTT-AGGGAGATAGGATTGGTTTCTTCTATCTACTCCACAACT
* *
33009342 ACTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACAACT
1 ACTTAGGGAGATAGGATTGGTTTCTTCTATCTACTCCACAACT
*
33009385 GCTTAGGGAGATA
1 ACTTAGGGAGATA
33009398 AGACTTGATG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 48 0.92
44 4 0.08
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (43 bp):
ACTTAGGGAGATAGGATTGGTTTCTTCTATCTACTCCACAACT
Found at i:33009569 original size:44 final size:44
Alignment explanation
Indices: 33009327--33009572 Score: 191
Period size: 44 Copynumber: 5.7 Consensus size: 44
33009317 GGTTTCTTCT
* * * ***
33009327 ATCTACTCCACTACTACTTAGGGAGATAGGA-TTGGTTTCTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTT-TG
* * **
33009371 -TCTGCTCCACAACTGCTTAGGGAGATAAGACTTGATG-C---G
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTTTG
* * * * *
33009410 ATTTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTTTG
* * * * ** **
33009454 ACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGT-TTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTTTG
* * *
33009497 ATCAGCTTCACTACTGCTTAGGAAGATAAGATTTGCCGTCTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTTTG
*
33009541 ATCTGCTCCACTACTGTTTAGGGAGATAAGAT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGAT
33009573 ATGTGGTCTT
Statistics
Matches: 154, Mismatches: 41, Indels: 14
0.74 0.20 0.07
Matches are distributed among these distances:
39 1 0.01
40 28 0.18
41 1 0.01
43 59 0.38
44 65 0.42
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCCGTCTTTG
Found at i:33009692 original size:86 final size:86
Alignment explanation
Indices: 33009594--33009960 Score: 621
Period size: 86 Copynumber: 4.3 Consensus size: 86
33009584 AGTCTGGTCT
* * *
33009594 GCTGTTAACGCAGGAAGGCAAGATCTGTTTCTATAACCAGCTCCACTGCAACCGGTGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
33009659 GCTTTGTTTTCGATCTGCTTC
66 GCTTTGTTTTCGATCTGCTTC
*
33009680 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCTACTGC--CCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
33009743 GCTTTGTTTTCGATCTGCTTC
66 GCTTTGTTTTCGATCTGCTTC
* *
33009764 GCTATTAATGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
33009829 GCTTTGTTTTCGATCTGCTTC
66 GCTTTGTTTTCGATCTGCTTC
* * *
33009850 GCTGTTAACACAGGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTGCAACTGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
33009915 GCTTTGTTTTCGATCTACTTC
66 GCTTTGTTTTCGATCTGCTTC
*
33009936 GTTGTTAACGCAGGAAGGCAAGATC
1 GCTGTTAACGCAGGAAGGCAAGATC
33009961 CAGCTCCACT
Statistics
Matches: 264, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
84 80 0.30
86 184 0.70
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (86 bp):
GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
GCTTTGTTTTCGATCTGCTTC
Found at i:33009890 original size:170 final size:171
Alignment explanation
Indices: 33009598--33009960 Score: 611
Period size: 170 Copynumber: 2.1 Consensus size: 171
33009588 TGGTCTGCTG
* *
33009598 TTAACGCAGGAAGGCAAGATCTGTTTCTATAACCAGCTCCACTGCAACCGGTGGAGGCAAGGCTT
1 TTAACGCAGGAAGGCAAGATCTGCTTCTATAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
* * *
33009663 TGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCTACTG
66 TGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTG
*
33009728 C-CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTA
131 CACCGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGCTA
* *
33009768 TTAATGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
1 TTAACGCAGGAAGGCAAGATCTGCTTCTATAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
33009833 TGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTG
66 TGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTG
* * *
33009898 CAACTGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGTTG
131 C-ACCGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGCTA
33009940 TTAACGCAGGAAGGCAAGATC
1 TTAACGCAGGAAGGCAAGATC
33009961 CAGCTCCACT
Statistics
Matches: 179, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
170 124 0.69
172 55 0.31
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (171 bp):
TTAACGCAGGAAGGCAAGATCTGCTTCTATAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
TGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTG
CACCGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGCTA
Found at i:33011223 original size:7 final size:7
Alignment explanation
Indices: 33011211--33011255 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
33011201 TTAGCCTCTC
33011211 CATTTTT
1 CATTTTT
33011218 CA-TTTT
1 CATTTTT
33011224 CATTTTT
1 CATTTTT
33011231 CATTTTT
1 CATTTTT
*
33011238 CA-TTCT
1 CATTTTT
33011244 CATTTTT
1 CATTTTT
33011251 C-TTTT
1 CATTTT
33011256 CTTTTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 15 0.44
7 19 0.56
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:33011229 original size:13 final size:13
Alignment explanation
Indices: 33011214--33011260 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
33011204 GCCTCTCCAT
33011214 TTTTCA-TTTTCA
1 TTTTCATTTTTCA
33011226 TTTTTCATTTTTCA
1 -TTTTCATTTTTCA
*
33011240 TTCTCATTTTTC-
1 TTTTCATTTTTCA
33011252 TTTTC-TTTT
1 TTTTCATTTT
33011261 CTTTTTTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 4 0.13
12 4 0.13
13 17 0.55
14 6 0.19
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:33011363 original size:97 final size:95
Alignment explanation
Indices: 33011181--33011363 Score: 210
Period size: 97 Copynumber: 1.9 Consensus size: 95
33011171 GGCCTAACGC
33011181 GCCCTTTCCGGGTTTTCCCCTTAGCCTCTCCATTTTTCATTTTCATTTTTCATTTTTCATTCTCA
1 GCCCTTTCCGGGTTTTCCCCTTAGCCTCTCCA-TTTTCATTTTCA-TTTTCATTTTTCATTCTCA
***
33011246 TTTTTCTTTTCTTTTCTTTTTTGACTCAGAGT
64 TTTTTCTTAGATTTTCTTTTTTGACTCAGAGT
* * * * * *
33011278 GCCCTTTGCGGGTTTTCGCTTTGGCCTCTCC-TTTTCTTTTTC-TTTTC-TTTTTCATTCTGATT
1 GCCCTTTCCGGGTTTTCCCCTTAGCCTCTCCATTTTCATTTTCATTTTCATTTTTCATTCTCA-T
33011340 TTTTCATCTAGATTTCTCTTTTTT
65 TTTTC-T-TAGATTT-TCTTTTTT
33011364 CATTCTTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
92 12 0.16
93 11 0.15
94 1 0.01
95 14 0.19
96 8 0.11
97 27 0.37
ACGTcount: A:0.08, C:0.25, G:0.10, T:0.57
Consensus pattern (95 bp):
GCCCTTTCCGGGTTTTCCCCTTAGCCTCTCCATTTTCATTTTCATTTTCATTTTTCATTCTCATT
TTTCTTAGATTTTCTTTTTTGACTCAGAGT
Found at i:33015637 original size:112 final size:110
Alignment explanation
Indices: 33015440--33015768 Score: 541
Period size: 110 Copynumber: 3.0 Consensus size: 110
33015430 GAAATTCGAG
* * * *
33015440 AGGATATTTGGCTATTTGGTTAAACGAGAAATATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
33015505 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTT-G-AAAATTTTTAAA
*
33015552 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
33015617 GAATTTTCCAAACGCAAAACATTGCCTTTTTTGAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
* *
33015662 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGTACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
33015727 AAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
33015769 GTTTTTGATG
Statistics
Matches: 203, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
110 113 0.56
111 1 0.00
112 89 0.44
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (110 bp):
AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
Found at i:33016276 original size:29 final size:29
Alignment explanation
Indices: 33016243--33016300 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
33016233 TAATAAAGTT
*
33016243 TAAATAAAGATATAAATAAGCA-AAAAAAG
1 TAAATAAAGAAATAAATAAG-ATAAAAAAG
*
33016272 TAAATAAATAAATAAATAAGATAAAAAAG
1 TAAATAAAGAAATAAATAAGATAAAAAAG
33016301 GGTTTAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.19
Consensus pattern (29 bp):
TAAATAAAGAAATAAATAAGATAAAAAAG
Found at i:33019477 original size:13 final size:14
Alignment explanation
Indices: 33019432--33019478 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
33019422 CCAATGTTCC
33019432 ATTTCATAT-ATCT
1 ATTTCATATAATCT
*
33019445 ATTTTCATATAATCG
1 A-TTTCATATAATCT
33019460 A-TTCATATAAT-T
1 ATTTCATATAATCT
33019472 ATTTCAT
1 ATTTCAT
33019479 GACATGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 1 0.03
13 16 0.55
14 8 0.28
15 4 0.14
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.51
Consensus pattern (14 bp):
ATTTCATATAATCT
Found at i:33026438 original size:18 final size:18
Alignment explanation
Indices: 33026396--33026439 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
33026386 CATAGTTTGG
** *
33026396 CAAATTAATACAGTTCGC
1 CAAATTAATACAAATCAC
*
33026414 CATATTAATACAAATCAC
1 CAAATTAATACAAATCAC
33026432 CAAATTAA
1 CAAATTAA
33026440 CACAGTTTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAATTAATACAAATCAC
Found at i:33026453 original size:36 final size:36
Alignment explanation
Indices: 33026396--33026477 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 36
33026386 CATAGTTTGG
* *
33026396 CAAATTAATACAGTTCGCCATATTAATACAAATCAC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
** * *
33026432 CAAATTAACACAGTTTTCCATAATAATATAATTCAC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
* *
33026468 TAAGTTAACA
1 CAAATTAACA
33026478 TGGTTCACAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (36 bp):
CAAATTAACACAGTTCGCCATAATAATACAAATCAC
Found at i:33026827 original size:35 final size:35
Alignment explanation
Indices: 33026704--33026842 Score: 131
Period size: 35 Copynumber: 4.0 Consensus size: 35
33026694 CGCAAACATT
* *
33026704 ACAAAACCCAT--ATACATATATATTATATATAAA
1 ACAAAACCCATACATATATATATATTATATATATA
* * *
33026737 ATAATACCCATATATGCATATATATATTATATATA-A
1 ACAAAACCCATACAT--ATATATATATTATATATATA
* * * *
33026773 TCAAGACCCATACACATATATGTATTATATATATA
1 ACAAAACCCATACATATATATATATTATATATATA
* **
33026808 ACAAAACCCATGCATATATATATATTGCATATATA
1 ACAAAACCCATACATATATATATATTATATATATA
33026843 CACATACCTT
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
33 9 0.11
34 17 0.20
35 31 0.36
36 11 0.13
37 17 0.20
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (35 bp):
ACAAAACCCATACATATATATATATTATATATATA
Found at i:33026840 original size:71 final size:68
Alignment explanation
Indices: 33026709--33026842 Score: 155
Period size: 71 Copynumber: 1.9 Consensus size: 68
33026699 ACATTACAAA
* * * *
33026709 ACCCATATACATATATATTATATATAAAATAATACCCATATATGCATATATATATTATATATAAT
1 ACCCATACACATATATATTATATATAAAACAAAACCCATATAT-CATATATATATCATATATAAT
33026774 CAAG
65 CAAG
*
33026778 ACCCATACACATATATGTATTATATATATAACAAAACCCATGCATAT-ATATATAT-TGCATATA
1 ACCCATACACATATA--TATTATATATAAAACAAAACCCAT--ATATCATATATATAT-CATATA
33026841 TA
61 TA
33026843 CACATACCTT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
69 14 0.25
70 1 0.02
71 36 0.65
73 4 0.07
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (68 bp):
ACCCATACACATATATATTATATATAAAACAAAACCCATATATCATATATATATCATATATAATC
AAG
Found at i:33031057 original size:25 final size:25
Alignment explanation
Indices: 33031023--33031085 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
33031013 GGAATTTTGG
*
33031023 AATCTGTATTCTGGATTGTATGTTC
1 AATCTGTATTCTGGATTGTATGTTA
*
33031048 AATTTGTATTCTGGATTGTATGTTA
1 AATCTGTATTCTGGATTGTATGTTA
33031073 AATCTGTATTCTG
1 AATCTGTATTCTG
33031086 CTTAGTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (25 bp):
AATCTGTATTCTGGATTGTATGTTA
Found at i:33032175 original size:16 final size:16
Alignment explanation
Indices: 33032152--33032193 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
33032142 CGTTTGGTTC
33032152 ACTGTAATAGAATAGA
1 ACTGTAATAGAATAGA
** *
33032168 GTTGTAATGGAATAGA
1 ACTGTAATAGAATAGA
33032184 ACTGTAATAG
1 ACTGTAATAG
33032194 TTCAATTGTT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.29
Consensus pattern (16 bp):
ACTGTAATAGAATAGA
Found at i:33032220 original size:42 final size:43
Alignment explanation
Indices: 33032173--33032262 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 43
33032163 ATAGAGTTGT
33032173 AATGGAATAGAACTGTAATAG-TTCA-ATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGATTCATA-TGTTTGGTTGAATGG
*
33032215 AATGGAATAGAACTGTAATAGTATTCTTATGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAG-ATTCATATGTTTGGTTGAATGG
33032259 AATG
1 AATG
33032263 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
42 21 0.48
44 22 0.50
45 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (43 bp):
AATGGAATAGAACTGTAATAGATTCATATGTTTGGTTGAATGG
Found at i:33036569 original size:2 final size:2
Alignment explanation
Indices: 33036557--33036613 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
33036547 TTAATACATG
* * * * *
33036557 TA TA TA AA TA TA TA TA TA AA TA TA TA TA TA -A GA TT TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
33036598 TA TA TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA
33036614 AGATTATTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (2 bp):
TA
Found at i:33036574 original size:12 final size:12
Alignment explanation
Indices: 33036557--33036613 Score: 69
Period size: 12 Copynumber: 4.3 Consensus size: 12
33036547 TTAATACATG
33036557 TATATAAATATA
1 TATATAAATATA
33036569 TATATAAATATA
1 TATATAAATATA
33036581 TATATAAGATTTATA
1 TATATAA-A--TATA
33036596 TGTATATAAATATA
1 --TATATAAATATA
33036610 TATA
1 TATA
33036614 AGATTATTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
12 23 0.57
13 1 0.03
14 4 0.10
15 4 0.10
16 1 0.03
17 7 0.17
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (12 bp):
TATATAAATATA
Found at i:33036601 original size:27 final size:27
Alignment explanation
Indices: 33036564--33036618 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
33036554 ATGTATATAA
33036564 ATATATATATAAATATATATATAAGATTT
1 ATATATATAT-AA-ATATATATAAGATTT
*
33036593 ATATGTATATAAATATATATAAGATT
1 ATATATATATAAATATATATAAGATT
33036619 ATTTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 14 0.56
28 2 0.08
29 9 0.36
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (27 bp):
ATATATATATAAATATATATAAGATTT
Found at i:33036638 original size:39 final size:39
Alignment explanation
Indices: 33036525--33036643 Score: 131
Period size: 41 Copynumber: 3.1 Consensus size: 39
33036515 ATGAATCCTC
*
33036525 AAATATAT-TTAG-TTATTTAATTTTAATACATGTATAT
1 AAATATATATAAGATTATTTAATTTTAATACATGTATAT
* *
33036562 AAATATATATATAAATATATATATAAGATTT-AT--ATGTATAT
1 AAATATATATA-AGAT-TAT-T-TAA-TTTTAATACATGTATAT
33036603 AAATATATATAAGATTATTTAATTTTAATACATGTATAT
1 AAATATATATAAGATTATTTAATTTTAATACATGTATAT
33036642 AA
1 AA
33036644 TTTTAATACA
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
36 3 0.04
37 13 0.19
38 2 0.03
39 14 0.21
40 4 0.06
41 22 0.33
42 1 0.01
43 5 0.07
44 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (39 bp):
AAATATATATAAGATTATTTAATTTTAATACATGTATAT
Found at i:33036640 original size:29 final size:27
Alignment explanation
Indices: 33036546--33036643 Score: 78
Period size: 27 Copynumber: 3.7 Consensus size: 27
33036536 GTTATTTAAT
*
33036546 TTTAATACATGTATATAA-A-TATATA
1 TTTAATACATATATATAAGATTATATA
* *
33036571 TATAA-ATATATATATAAGATT-TATA
1 TTTAATACATATATATAAGATTATATA
* * *
33036596 TGTATATAAATATATATAAGATTATTTAA
1 TTTA-ATACATATATATAAGATTATAT-A
*
33036625 TTTTAATACATGTATATAA
1 -TTTAATACATATATATAA
33036644 TTTTAATACA
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
24 10 0.18
25 12 0.21
26 2 0.04
27 15 0.26
28 2 0.04
29 13 0.23
30 3 0.05
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (27 bp):
TTTAATACATATATATAAGATTATATA
Found at i:33036667 original size:23 final size:19
Alignment explanation
Indices: 33036622--33036661 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
33036612 TAAGATTATT
33036622 TAATTTTAATACATGTATA
1 TAATTTTAATACATGTATA
*
33036641 TAATTTTAATACATGAATA
1 TAATTTTAATACATGTATA
33036660 TA
1 TA
33036662 TATAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TAATTTTAATACATGTATA
Found at i:33040272 original size:17 final size:16
Alignment explanation
Indices: 33040250--33040299 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
33040240 GGATAAAATA
33040250 ACTTGGCAAATAGAATT
1 ACTTGGCAAATAG-ATT
*
33040267 ACTTGGAAAATAGATT
1 ACTTGGCAAATAGATT
* *
33040283 GCCTGGCAAATACGATT
1 ACTTGGCAAATA-GATT
33040300 CGCAATATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (16 bp):
ACTTGGCAAATAGATT
Found at i:33048268 original size:31 final size:31
Alignment explanation
Indices: 33048225--33048292 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
33048215 ATGTAAAGTT
* *
33048225 AAAT-TTTT-TAAAATGGTCATAT-AATGGTC
1 AAATCTTTTATAAAATGCTCAAATGAAT-GTC
*
33048254 TAATCTTTTATAAAATGCTCAAATGAATGTC
1 AAATCTTTTATAAAATGCTCAAATGAATGTC
33048285 AAATCTTT
1 AAATCTTT
33048293 CCAAATGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 4 0.12
31 22 0.69
32 3 0.09
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (31 bp):
AAATCTTTTATAAAATGCTCAAATGAATGTC
Found at i:33048959 original size:22 final size:22
Alignment explanation
Indices: 33048933--33048998 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
33048923 CTCTCAATCC
*
33048933 CTCTCAAATTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
33048955 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
*
33048977 CTCTCAATTTTCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
33048999 TCAATTTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:33049056 original size:51 final size:52
Alignment explanation
Indices: 33048956--33049067 Score: 145
Period size: 52 Copynumber: 2.2 Consensus size: 52
33048946 TCCAAAATTC
* * * * *
33048956 TCTCAATTTCCTTCCAAAATTCTCTCAATTTTCTTCCAAAATTTCAATTTCT
1 TCTCAATTTCCTTCAAAAATTCTCTCAATATTCATACAAAATTTAAATTTCT
***
33049008 TCTCAATTTCCTTCAAAAATTCTCTCAA-ATTCATATTTAATTTAAATTTCT
1 TCTCAATTTCCTTCAAAAATTCTCTCAATATTCATACAAAATTTAAATTTCT
33049059 TCTCAATTT
1 TCTCAATTT
33049068 TCTTTTTTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
51 25 0.48
52 27 0.52
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.47
Consensus pattern (52 bp):
TCTCAATTTCCTTCAAAAATTCTCTCAATATTCATACAAAATTTAAATTTCT
Found at i:33050224 original size:7 final size:7
Alignment explanation
Indices: 33050214--33050238 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
33050204 ATTCGATTGA
33050214 TATTTAG
1 TATTTAG
33050221 TATTTAG
1 TATTTAG
33050228 TATTTAG
1 TATTTAG
33050235 TATT
1 TATT
33050239 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:33051462 original size:37 final size:37
Alignment explanation
Indices: 33051412--33051485 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
33051402 GATGTAATAA
** *
33051412 TAATTAAAAACCCTGGCCTAATTGT-CTTAAAAACCCT
1 TAATTAAAAACCCTAACCTAATT-TAATTAAAAACCCT
33051449 TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT
1 TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT
33051486 AGTCTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.30
Consensus pattern (37 bp):
TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT
Found at i:33051538 original size:44 final size:44
Alignment explanation
Indices: 33051448--33051554 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
33051438 TTAAAAACCC
* * **
33051448 TTAATTAAAAACCCT-AACCTAATTTAATTAAAAACCCTAGTCTAAT
1 TTAATTAAAAACCCTAAACC---CTTAAATAAAAACCCTAACCTAAT
* *
33051494 TTAATTAAAAGCCCTAAACCCTTAAATAAAAGCCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTTAAATAAAAACCCTAACCTAAT
33051538 TTAATTAAAAACCCTAA
1 TTAATTAAAAACCCTAA
33051555 TCCTAACCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 35 0.66
46 14 0.26
47 4 0.08
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (44 bp):
TTAATTAAAAACCCTAAACCCTTAAATAAAAACCCTAACCTAAT
Found at i:33051560 original size:29 final size:29
Alignment explanation
Indices: 33051527--33051583 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
33051517 AAATAAAAGC
*
33051527 CCTAACCTAATTTAATTAAAAACCCTAAT
1 CCTAACCTAATTCAATTAAAAACCCTAAT
*
33051556 CCTAACCTAATTCATTTAAAAACCCTAA
1 CCTAACCTAATTCAATTAAAAACCCTAA
33051584 ACCCTTCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (29 bp):
CCTAACCTAATTCAATTAAAAACCCTAAT
Found at i:33051674 original size:50 final size:50
Alignment explanation
Indices: 33051538--33052092 Score: 663
Period size: 50 Copynumber: 10.9 Consensus size: 50
33051528 CTAACCTAAT
* * *
33051538 TTAATTAAAAACCCTAATCCTAACCTAATTCATTTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* ** * * * *
33051588 TTCTACCAATAACCCTAACCCTAATCTAATTTAATTAAAAGCCCTAAACCC
1 TT-AAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
*
33051639 TTAAATAAAAACCCTAACCTTAACCTAATTCAATTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* * *
33051689 TTAAATAAATACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
33051739 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* * *
33051789 TTAATTAAAAACCCTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAGCCCTAAACCC
1 TTAAATAAAAACCC-----T---AACCCTAA-CCT-A----ATTCAATTAAAAACCCTAAACCC
**
33051853 TTAAATAAAAACCCTAACCCTAGTCTAATTCAATTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* ** * *
33051903 TTAAATGAAAACCCTAACATTAACATAATTTAATTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* *
33051953 TTAAATGAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* *
33052003 TTAATTAAAAACCCTAA-CCTAA--T--TT-AATTAAAAGCCCTAAACCC
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
* *
33052047 TTAAATAAAAATCCTAACCCTAATCTAATTCAATTAAAAACCCTAA
1 TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAA
33052093 CTCTAACTTA
Statistics
Matches: 436, Mismatches: 48, Indels: 42
0.83 0.09 0.08
Matches are distributed among these distances:
44 33 0.08
45 7 0.02
47 2 0.00
49 7 0.02
50 288 0.66
51 41 0.09
54 1 0.00
55 3 0.01
56 7 0.02
58 8 0.02
59 4 0.01
60 1 0.00
64 34 0.08
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (50 bp):
TTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
Found at i:33051747 original size:21 final size:20
Alignment explanation
Indices: 33051718--33051759 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
33051708 CTAACCTAAT
* *
33051718 TTAATTAAAAGCCCTAAACCC
1 TTAAATAAAAACCCT-AACCC
33051739 TTAAATAAAAACCCTAACCC
1 TTAAATAAAAACCCTAACCC
33051759 T
1 T
33051760 AACCTAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.45, C:0.29, G:0.02, T:0.24
Consensus pattern (20 bp):
TTAAATAAAAACCCTAACCC
Found at i:33051801 original size:64 final size:64
Alignment explanation
Indices: 33051733--33051867 Score: 225
Period size: 64 Copynumber: 2.1 Consensus size: 64
33051723 TAAAAGCCCT
*
33051733 AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAATTAA
1 AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
* * * *
33051797 AAACCCTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAGCCCTAAACCCTTAAATAA
1 AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
33051861 AAACCCT
1 AAACCCT
33051868 AACCCTAGTC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.47, C:0.28, G:0.01, T:0.24
Consensus pattern (64 bp):
AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
Found at i:33051802 original size:14 final size:14
Alignment explanation
Indices: 33051783--33051817 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
33051773 TAAAAACCCT
33051783 AAACCCTTAATTAA
1 AAACCCTTAATTAA
33051797 AAACCCTTAATTAA
1 AAACCCTTAATTAA
33051811 AAACCCT
1 AAACCCT
33051818 AACCCTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
AAACCCTTAATTAA
Found at i:33051825 original size:114 final size:114
Alignment explanation
Indices: 33051683--33051917 Score: 407
Period size: 114 Copynumber: 2.1 Consensus size: 114
33051673 TAAAAACCCT
*
33051683 AAACCCTTAAATAAATACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAA
1 AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAA
*
33051748 AACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAATTAA
66 AACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
* *
33051797 AAACCCTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAGCCCTAAACCCTTAAATAAA
1 AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAA
** *
33051862 AACCCTAACCCTAGTCTAATTCAATTAAAAACCCTAAACCCTTAAATGA
66 AACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
33051911 AAACCCT
1 AAACCCT
33051918 AACATTAACA
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.46, C:0.28, G:0.02, T:0.24
Consensus pattern (114 bp):
AAACCCTTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAA
AACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAAATAA
Found at i:33051866 original size:214 final size:214
Alignment explanation
Indices: 33051598--33052017 Score: 725
Period size: 214 Copynumber: 2.0 Consensus size: 214
33051588 TTCTACCAAT
* *
33051598 AACCCTAACCCTAATCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCTTAAC
1 AACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAAC
* *
33051663 CTAATTCAATTAAAAACCCTAAACCCTTAAAT-AAATACCCTAACCCTAACCTAATTTAATTAAA
66 CTAATTCAATTAAAAACCCTAAACCCTTAAATGAAA-ACCCTAACACTAACATAATTTAATTAAA
*
33051727 AGCCCTAAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTA
130 AACCCTAAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTA
33051792 ATTAAAAACCCTTAATTAAA
195 ATTAAAAACCCTTAATTAAA
* **
33051812 AACCCTAACCCTAACCTGATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAGT
1 AACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAAC
*
33051877 CTAATTCAATTAAAAACCCTAAACCCTTAAATGAAAACCCTAACATTAACATAATTTAATTAAAA
66 CTAATTCAATTAAAAACCCTAAACCCTTAAATGAAAACCCTAACACTAACATAATTTAATTAAAA
* *
33051942 ACCCTAAACCCTTAAATGAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA
131 ACCCTAAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAA
33052007 TTAAAAACCCT
196 TTAAAAACCCT
33052018 AACCTAATTT
Statistics
Matches: 194, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
214 191 0.98
215 3 0.02
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.25
Consensus pattern (214 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAAC
CTAATTCAATTAAAAACCCTAAACCCTTAAATGAAAACCCTAACACTAACATAATTTAATTAAAA
ACCCTAAACCCTTAAATAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAA
TTAAAAACCCTTAATTAAA
Found at i:33051873 original size:20 final size:21
Alignment explanation
Indices: 33051832--33051873 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
33051822 CTAACCTGAT
* *
33051832 TTAATTAAAAGCCCTAAACCC
1 TTAAATAAAAACCCTAAACCC
33051853 TTAAATAAAAACCCT-AACCC
1 TTAAATAAAAACCCTAAACCC
33051873 T
1 T
33051874 AGTCTAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.45, C:0.29, G:0.02, T:0.24
Consensus pattern (21 bp):
TTAAATAAAAACCCTAAACCC
Found at i:33052007 original size:21 final size:20
Alignment explanation
Indices: 33051982--33052067 Score: 91
Period size: 21 Copynumber: 4.0 Consensus size: 20
33051972 CTAACCTAAT
33051982 TTAATTAAAAACCCTAAACCC
1 TTAATTAAAAACCCT-AACCC
*
33052003 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACC---C
*
33052026 TTAATTAAAAGCCCTAAACCC
1 TTAATTAAAAACCCT-AACCC
* *
33052047 TTAAATAAAAATCCTAACCC
1 TTAATTAAAAACCCTAACCC
33052067 T
1 T
33052068 AATCTAATTC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
20 10 0.18
21 27 0.49
23 14 0.25
24 4 0.07
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.27
Consensus pattern (20 bp):
TTAATTAAAAACCCTAACCC
Found at i:33052086 original size:29 final size:29
Alignment explanation
Indices: 33052052--33052205 Score: 106
Period size: 29 Copynumber: 5.8 Consensus size: 29
33052042 AACCCTTAAA
*
33052052 TAAAAATCCTAACCCTAA-TCTAATTCAAT
1 TAAAAACCCTAACCCTAACT-TAATTCAAT
* *
33052081 TAAAAACCCTAACTCTAACTTAATTTAAT
1 TAAAAACCCTAACCCTAACTTAATTCAAT
* *
33052110 TAAAAGCCCTAAACC---CTT-A---AA-
1 TAAAAACCCTAACCCTAACTTAATTCAAT
33052131 TAAAAACCCTAAC-CTAA--T--TT-AA-
1 TAAAAACCCTAACCCTAACTTAATTCAAT
* *
33052153 TAAAAACCCTAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCCTAACTTAATTCAAT
* *
33052182 TAAAAACCCTAACCTTAACGTAAT
1 TAAAAACCCTAACCCTAACTTAAT
33052206 GTTAGATTTG
Statistics
Matches: 102, Mismatches: 10, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
20 1 0.01
21 12 0.12
22 17 0.17
23 4 0.04
25 2 0.02
26 3 0.03
27 2 0.02
28 2 0.02
29 58 0.57
30 1 0.01
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (29 bp):
TAAAAACCCTAACCCTAACTTAATTCAAT
Found at i:33052137 original size:194 final size:189
Alignment explanation
Indices: 33051818--33052193 Score: 483
Period size: 194 Copynumber: 1.9 Consensus size: 189
33051808 TAAAAACCCT
* *
33051818 AACCCTAACCTGATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAGTCTAATT
1 AACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAATCTAATT
* *
33051883 CAATTAAAAACCCTAAACCCTTAAATGAAAACCCTAACATTAACATAATTTAATTAAAAACCCTA
66 CAATTAAAAACCCTAAACCCTTAAATGAAAACCCT-A-A-TAAC--AACTTAAATAAAAACCCT-
* *
33051948 AACC-CTTAAATGAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAA
125 AACCAATTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAA
*
33052012 AACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAATCCTAACCCTAATCTAATT
1 AACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAATCTAATT
* *
33052077 CAATTAAAAACCCT-AACTCTAACTTAATTTAATTAAAAGCCCT-A-AAC-CCTTAAATAAAAAC
66 CAATTAAAAACCCTAAAC-C---CTT-A---AATGAAAA-CCCTAATAACAACTTAAATAAAAAC
*
33052138 CCTAACCTAATTTAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
122 CCTAACC-AATTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
33052194 CCTTAACGTA
Statistics
Matches: 161, Mismatches: 10, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
193 7 0.04
194 91 0.57
195 44 0.27
197 6 0.04
198 1 0.01
199 1 0.01
201 7 0.04
202 4 0.02
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (189 bp):
AACCCTAACCTAATTTAATTAAAAGCCCTAAACCCTTAAATAAAAACCCTAACCCTAATCTAATT
CAATTAAAAACCCTAAACCCTTAAATGAAAACCCTAATAACAACTTAAATAAAAACCCTAACCAA
TTAAATAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAA
Found at i:33052154 original size:22 final size:22
Alignment explanation
Indices: 33052095--33052166 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
33052085 AACCCTAACT
* *
33052095 CTAACTTAATTTAATTAAAAGCC
1 CTAACCTAATTTAA-TAAAAACC
* *
33052118 CTAAACC--CTTAAATAAAAACC
1 CT-AACCTAATTTAATAAAAACC
33052139 CTAACCTAATTTAATAAAAACC
1 CTAACCTAATTTAATAAAAACC
33052161 CTAACC
1 CTAACC
33052167 CTAACCTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
20 4 0.10
21 9 0.22
22 22 0.55
23 2 0.05
24 3 0.08
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.26
Consensus pattern (22 bp):
CTAACCTAATTTAATAAAAACC
Found at i:33052175 original size:28 final size:29
Alignment explanation
Indices: 33052135--33052205 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
33052125 CTTAAATAAA
33052135 AACCCTAACCTAATTTAA-TAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
33052163 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
* *
33052192 AACCTTAACGTAAT
1 AACCCTAACCTAAT
33052206 GTTAGATTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 18 0.45
29 22 0.55
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (29 bp):
AACCCTAACCTAATTTAATTAAAAACCCT
Found at i:33052418 original size:17 final size:18
Alignment explanation
Indices: 33052377--33052418 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
33052367 TTTACTAACC
* *
33052377 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
33052395 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
33052412 ATTAATA
1 ATTAATA
33052419 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:33055781 original size:126 final size:125
Alignment explanation
Indices: 33055430--33055766 Score: 419
Period size: 126 Copynumber: 2.7 Consensus size: 125
33055420 CCCAAACATG
** * *
33055430 CTACTGTAGCAAAA-TCGCGTCCATTAGGGCGCGATTTCACAAATTCTTCCCAAATAGCATCCTG
1 CTACTGTAGCAAAAGT-GCGTCCACAAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTG
* * *
33055494 GTATAAGCGATTTTATGTTATTTGCTCAGAAACGTC-AAAAAAAATTATAGATTAAAAGAC
65 CTAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAAAATTATAGATTAAAAGAC
* * * * *
33055554 CTACTGTAGCAAAAGCGCG-CTGACGAGGCCGCAATTTCATAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGTGCGTC-CACAAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTG
* * * *** ****
33055618 CTGGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
65 CTAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAA-AATTATAGATTAAAAGAC
*
33055680 CTACTGTAGCAAAAGTGCGTCCACAAGGGCGCGATTTCATAAATTCTTCTCAAATACCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACAAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
33055745 TAGAAGCGATTTTATATTATTT
66 TAGAAGCGATTTTATATTATTT
33055767 TATTAGAAAT
Statistics
Matches: 179, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
123 1 0.01
124 83 0.46
125 6 0.03
126 88 0.49
127 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGTGCGTCCACAAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAAAATTATAGATTAAAAGAC
Found at i:33058339 original size:22 final size:22
Alignment explanation
Indices: 33058314--33058358 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
33058304 GTTCTTAATA
*
33058314 TTGTATATAAACGTGATTCTTG
1 TTGTATATAAACCTGATTCTTG
33058336 TTGTATATAAACCTGATTCTTG
1 TTGTATATAAACCTGATTCTTG
33058358 T
1 T
33058359 CCAAAACGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.47
Consensus pattern (22 bp):
TTGTATATAAACCTGATTCTTG
Found at i:33059955 original size:27 final size:26
Alignment explanation
Indices: 33059925--33059981 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
33059915 AAATTAGTTA
*
33059925 ATATTATT-AACTTAGTTAATTTAAGT
1 ATATT-TTCAACTAAGTTAATTTAAGT
* *
33059951 GATATTTTCAAGTAATTTAATTTAAGT
1 -ATATTTTCAACTAAGTTAATTTAAGT
33059978 ATAT
1 ATAT
33059982 AAATTATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.49
Consensus pattern (26 bp):
ATATTTTCAACTAAGTTAATTTAAGT
Found at i:33061389 original size:10 final size:10
Alignment explanation
Indices: 33061376--33061455 Score: 57
Period size: 10 Copynumber: 8.6 Consensus size: 10
33061366 AAATATAAAG
*
33061376 ATATATTTTA
1 ATATAATTTA
33061386 ATATAATTTA
1 ATATAATTTA
**
33061396 ATATAAAACTA
1 ATAT-AATTTA
*
33061407 A-A-AAATTA
1 ATATAATTTA
33061415 ATATAATTTA
1 ATATAATTTA
*
33061425 AAATAA---A
1 ATATAATTTA
33061432 ATAT--TTTA
1 ATATAATTTA
33061440 ATATAATTTA
1 ATATAATTTA
33061450 ATATAA
1 ATATAA
33061456 AAATAATTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
7 4 0.07
8 11 0.20
9 1 0.02
10 34 0.62
11 5 0.09
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATAATTTA
Found at i:33061473 original size:15 final size:15
Alignment explanation
Indices: 33061453--33061530 Score: 58
Period size: 16 Copynumber: 5.3 Consensus size: 15
33061443 TAATTTAATA
33061453 TAAAAATAATTATAT
1 TAAAAATAATTATAT
33061468 TAAAAAT-A-T-TAT
1 TAAAAATAATTATAT
*
33061480 TAAATTATATATTAT-T
1 TAAA-AATA-ATTATAT
* **
33061496 TTATTA-AATTATAT
1 TAAAAATAATTATAT
33061510 TAAATAATAATTATAT
1 TAAA-AATAATTATAT
33061526 TAAAA
1 TAAAA
33061531 TATGATTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
12 7 0.14
13 8 0.16
14 5 0.10
15 12 0.24
16 16 0.33
17 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TAAAAATAATTATAT
Found at i:33061512 original size:10 final size:10
Alignment explanation
Indices: 33061460--33061544 Score: 63
Period size: 10 Copynumber: 8.6 Consensus size: 10
33061450 ATATAAAAAT
33061460 AATTATATTAA
1 AATTATATT-A
*
33061471 AAATATTATTA
1 AATTA-TATTA
33061482 AATTATA-TA
1 AATTATATTA
* *
33061491 TTATTTTATTA
1 -AATTATATTA
33061502 AATTATATTA
1 AATTATATTA
33061512 AA-TA-A-T-
1 AATTATATTA
33061518 AATTATATTA
1 AATTATATTA
*
33061528 AAATATGATTA
1 AATTAT-ATTA
33061539 AATTAT
1 AATTAT
33061545 TTATTATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
6 2 0.03
7 3 0.05
8 2 0.03
9 5 0.09
10 22 0.38
11 20 0.34
12 4 0.07
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (10 bp):
AATTATATTA
Found at i:33061539 original size:57 final size:58
Alignment explanation
Indices: 33061453--33061571 Score: 181
Period size: 57 Copynumber: 2.1 Consensus size: 58
33061443 TAATTTAATA
*
33061453 TAAA-AATAATTATATTAAAAATATTATTAAATTATATATTATTTTATTAAAT-TATAT
1 TAAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTATTAAATCT-TAT
* *
33061510 TAAATAATAATTATATT-AAAATATGATTAAATTATTTATTATTTTATTAGATCTTAT
1 TAAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTATTAAATCTTAT
33061567 TAAAT
1 TAAAT
33061572 TTTAATAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 44 0.77
58 13 0.23
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (58 bp):
TAAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTATTAAATCTTAT
Found at i:33065074 original size:47 final size:46
Alignment explanation
Indices: 33065003--33065093 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 46
33064993 GTAGGGAAAA
* * *
33065003 GAAAAAGAAATTCCCCATGTATTTCAAT-GTCATTGAGGGTTGCCNAG
1 GAAAAAGAAACTCCCCATGCATTTC-ATCGTCATGGAGGGTTGCC-AG
*
33065050 GAAAAAGAAACTCCCCATGCATTTCATCGTCGTGGAGGGTTGCC
1 GAAAAAGAAACTCCCCATGCATTTCATCGTCATGGAGGGTTGCC
33065094 TAGTAGGTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 2 0.05
47 37 0.95
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (46 bp):
GAAAAAGAAACTCCCCATGCATTTCATCGTCATGGAGGGTTGCCAG
Found at i:33066505 original size:12 final size:12
Alignment explanation
Indices: 33066490--33066532 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
33066480 GTAATTAAAA
33066490 ACTTGATTAATG
1 ACTTGATTAATG
*
33066502 ACTTGATTCATG
1 ACTTGATTAATG
33066514 ACTTGATTCAA-G
1 ACTTGATT-AATG
33066526 ACTTGAT
1 ACTTGAT
33066533 GATAAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 27 0.96
13 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (12 bp):
ACTTGATTAATG
Found at i:33077369 original size:31 final size:32
Alignment explanation
Indices: 33077333--33077393 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
33077323 TAAAAATAAT
* *
33077333 AATAGTCTAGTGACTTAAAT-AAATTTTTTTA
1 AATAGTCTAGTGACTAAAATGAAAATTTTTTA
* *
33077364 AATAGTTTATTGACTAAAATGAAAATTTTT
1 AATAGTCTAGTGACTAAAATGAAAATTTTT
33077394 GAATAATTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (32 bp):
AATAGTCTAGTGACTAAAATGAAAATTTTTTA
Found at i:33078803 original size:6 final size:6
Alignment explanation
Indices: 33078792--33078828 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
33078782 TATCCTCAAA
33078792 CTAACC CTAACC CTAACC CTAACC CTAACC CTAACC C
1 CTAACC CTAACC CTAACC CTAACC CTAACC CTAACC C
33078829 AAGAACTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.16
Consensus pattern (6 bp):
CTAACC
Found at i:33082099 original size:5 final size:5
Alignment explanation
Indices: 33082089--33082114 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33082079 TGATTATTCA
33082089 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
33082115 GATGAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:33083715 original size:20 final size:20
Alignment explanation
Indices: 33083681--33083722 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
33083671 AACTATTTAA
** *
33083681 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
33083701 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
33083721 AT
1 AT
33083723 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:33092187 original size:20 final size:20
Alignment explanation
Indices: 33092164--33092206 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
33092154 AACTATTTAA
** *
33092164 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
33092184 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
33092204 ATA
1 ATA
33092207 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:33092187 original size:32 final size:32
Alignment explanation
Indices: 33092145--33092205 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
33092135 TTTTTTGAAA
33092145 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
33092177 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
33092206 ATTTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:33096695 original size:411 final size:407
Alignment explanation
Indices: 33095914--33097528 Score: 2168
Period size: 411 Copynumber: 4.0 Consensus size: 407
33095904 TGTATACTTT
**
33095914 ATTAAAGGTTTTCTTGACCTTGAAAATGTATTACTTGTACAATGATTGAAAACTAA-TGTAATAA
1 ATTAAAGGTTTTCTTGACCTTGAAAATGTATTACTTGTACAGGGATTGAAAACTAAGT-TAATAA
* * *
33095978 GCATAAGTCAAGC-ATGTGACCAAAGACTTAATATGTGATTTAACAAAAATAGTTGTGATGTAAT
65 GCATAAGTCAA-CTATATGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAAT
* * * * *
33096042 TAATGAAAAAAAAAATTTAGAATAAGAAGAGTAAAAACTTTTGATAATTGCTACAAAGTTTTGAA
129 TAATG--AAAAAAAATTTATAATAAGAGGAGCAAAAACTTTTGAAAATTGCTACAAAGTTTTTAA
* * *
33096107 TGAAGTTATTTTCAATAAAGCTACTATGCAAGATCTAGATGTGTGACATCAAAAGATTGGTGGTG
192 TGAAGTTATTTGCAATAAAGCTACTATGCAAGATCTAGAGGTGTGACATCAAAAGATTGGTGATG
* * *
33096172 TGAATTATCGAAACTTACAAAGAATTGATCAATATGATGCAATTAGATGACTTTCAAAACTCGAA
257 TGAATTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCAAAACTCAAA
* *
33096237 AGTGTTGTGACCAAACGTTGTGGAGATTGTGTTTTGGGGAGACAACACATGGTGACCCATCTAAT
322 AGTGTTGTGACCAAACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGGTGACCCATCTAAT
33096302 TTTGCCACAAGTAGTGACACA
387 TTTGCCACAAGTAGTGACACA
* * * *
33096323 ATTAAAGGTTTTCTTGACCTTTAAAATATATTACTTGTA-TGTGGATTGAAAGCTAAGTTAATAA
1 ATTAAAGGTTTTCTTGACCTTGAAAATGTATTACTTGTACAG-GGATTGAAAACTAAGTTAATAA
* *
33096387 GCATAAGTCAACTATATGACCAAAGGCTTAATATGATATTTAACAAAAATAGTTGGGATGTAATT
65 GCATAAGTCAACTATATGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATT
* * * **
33096452 AATGAAAAGAATTGTTATAATAGGAGGAGCAAAATTTTTTGAAAATTGCTACAAAGTTTTTAATG
130 AATGAAAAAAAAT-TTATAATAAGAGGAGCAAAAACTTTTGAAAATTGCTACAAAGTTTTTAATG
*
33096517 AAGTTATTTGCAATAAAGCTACTATGCAAGATCTAAAGGTGTGACAATATCAAAAGATTGGTGAT
194 AAGTTATTTGCAATAAAGCTACTATGCAAGATCTAGAGGTGTGAC---ATCAAAAGATTGGTGAT
* * * *
33096582 GTGAATTATCAAAACTTACAAAGACTTTATCAATATGATGTAATTAGAATACTTTCAAAACTCAA
256 GTGAATTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCAAAACTCAA
* * *
33096647 AAGTGTTGTGACCAAACCTTGTGGAGATTGTGTTTTGAGGAAACAACACATAGTGACCTATCTAA
321 AAGTGTTGTGACCAAACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGGTGACCCATCTAA
*
33096712 TTTTGCCATAAGTAGTGACACA
386 TTTTGCCACAAGTAGTGACACA
* * * * *
33096734 ATTAAAGATTTTCTTAACCTTGATAATGTACTACTTGTACAGGGATTGAAAACTAACTTAATAAG
1 ATTAAAGGTTTTCTTGACCTTGAAAATGTATTACTTGTACAGGGATTGAAAACTAAGTTAATAAG
*
33096799 CATAAGTCAACTATGTGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATTA
66 CATAAGTCAACTATATGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATTA
* ** * *
33096864 ATGAAAAAAATTCTTATAATAAGAGGAGCAAAAAAATTTGAAACTTGTTACAAAGTTTTTAATGA
131 ATGAAAAAAAAT-TTATAATAAGAGGAGCAAAAACTTTTGAAAATTGCTACAAAGTTTTTAATGA
* * *
33096929 AGTTATTTGCAATAAAGCTACTATGCAAGATCTGGAGGTGTTACATCAAAACATTGGTGATGTGA
195 AGTTATTTGCAATAAAGCTACTATGCAAGATCTAGAGGTGTGACATCAAAAGATTGGTGATGTGA
* * ** *
33096994 ACTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGATTTTCAAAACTTGAATGT
260 ATTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCAAAACTCAAAAGT
* * * * * * *
33097059 GTTGTGATCAGACCTTGTGGAGATTGTGTTTTGGGTAAACAACACGTGTTGTCTCATCTAATTTT
325 GTTGTGACCAAACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGGTGACCCATCTAATTTT
* *
33097124 GCCACAAGTAATAACACA
390 GCCACAAGTAGTGACACA
* * *
33097142 ATTAAA-TTTTTCCTTGACC-TGAAAATGTATTACTTTTACAGGGTTTGAAAAC--------TAA
1 ATTAAAGGTTTT-CTTGACCTTGAAAATGTATTACTTGTACAGGGATTGAAAACTAAGTTAATAA
*
33097197 -C-T---T--A--ATA--ACAAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATT
65 GCATAAGTCAACTATATGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATT
* * * *
33097251 AATG-AAAAAAATATTATAATAAAAGGAGCAAGAACTTTTGACAATTGCTACAAAGTTTTTAAGG
130 AATGAAAAAAAAT-TTATAATAAGAGGAGCAAAAACTTTTGAAAATTGCTACAAAGTTTTTAATG
* * * * * *
33097315 AAATTATTTGCAATAAAGTTACTATGCAAGATCTGGAGGTGTTACATTAAAA-ATT-TTGATGTG
194 AAGTTATTTGCAATAAAGCTACTATGCAAGATCTAGAGGTGTGACATCAAAAGATTGGTGATGTG
* *
33097378 AATTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCGAAACCCAAAAG
259 AATTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCAAAACTCAAAAG
* * *
33097443 TGTTGTGACCAGACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGTTGTCCCATCTAATTT
324 TGTTGTGACCAAACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGGTGACCCATCTAATTT
33097508 TGCCACAAGTAGTGACACA
389 TGCCACAAGTAGTGACACA
33097527 AT
1 AT
33097529 GGCCATTGGA
Statistics
Matches: 1078, Mismatches: 119, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
385 145 0.13
386 3 0.00
387 99 0.09
388 50 0.05
390 2 0.00
392 1 0.00
394 1 0.00
397 1 0.00
398 1 0.00
399 3 0.00
407 40 0.04
408 244 0.23
409 117 0.11
410 1 0.00
411 369 0.34
412 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.32
Consensus pattern (407 bp):
ATTAAAGGTTTTCTTGACCTTGAAAATGTATTACTTGTACAGGGATTGAAAACTAAGTTAATAAG
CATAAGTCAACTATATGACCAAAGGCTTAATATGAGATTTAACAAAAATAGTTGTGATGTAATTA
ATGAAAAAAAATTTATAATAAGAGGAGCAAAAACTTTTGAAAATTGCTACAAAGTTTTTAATGAA
GTTATTTGCAATAAAGCTACTATGCAAGATCTAGAGGTGTGACATCAAAAGATTGGTGATGTGAA
TTATCGAAACTTACAAAGACTTGATCAATATGATGCAATTAGAAGACTTTCAAAACTCAAAAGTG
TTGTGACCAAACCTTGTGGAGATTGTGTTTTGGGGAAACAACACATGGTGACCCATCTAATTTTG
CCACAAGTAGTGACACA
Found at i:33108131 original size:27 final size:27
Alignment explanation
Indices: 33108101--33108551 Score: 291
Period size: 27 Copynumber: 16.7 Consensus size: 27
33108091 AAAATGACCA
**
33108101 AAATACCTTCGAAGGGTAAAATGAATG
1 AAATACCCCCGAAGGGTAAAATGAATG
*** *
33108128 AAATACCCTTAAAGGGTAAAATGACTG
1 AAATACCCCCGAAGGGTAAAATGAATG
*
33108155 AAATACCCCC-ATAGGGTAAAATGATTG
1 AAATACCCCCGA-AGGGTAAAATGAATG
* * *
33108182 AAATACCCCC-ATAGGGTAAAATTACTA
1 AAATACCCCCGA-AGGGTAAAATGAATG
* * *
33108209 AAATA-CCCCAATAGGATAAAATGACTG
1 AAATACCCCCGA-AGGGTAAAATGAATG
* *
33108236 AAATACCCCC-ATAGGATAAAATG-ATC
1 AAATACCCCCGA-AGGGTAAAATGAATG
* *
33108262 AAATTACCCTCGAAGGGTAAAATGACTG
1 AAA-TACCCCCGAAGGGTAAAATGAATG
* * *
33108290 AATTACCCCCAAAGGGTAAAACG-ATCG
1 AAATACCCCCGAAGGGTAAAATGAAT-G
* * * **
33108317 AATTACCCCCAAAGGGTAAAACGACCG
1 AAATACCCCCGAAGGGTAAAATGAATG
* * * *
33108344 AATTACCCTCAAAGGGTAAAAT-TATCG
1 AAATACCCCCGAAGGGTAAAATGAAT-G
* * *
33108371 AAATACCCTCGAAAGGTAAAAT-TATCG
1 AAATACCCCCGAAGGGTAAAATGAAT-G
* *
33108398 AAATACCCTCGAAGGGTAAAATGATTG
1 AAATACCCCCGAAGGGTAAAATGAATG
* *
33108425 AAATACCCCCGAAAGGTAAAATG-ATCT
1 AAATACCCCCGAAGGGTAAAATGAAT-G
* * * **
33108452 AAATACTCTC-ATAGGATAAAATGACCG
1 AAATACCCCCGA-AGGGTAAAATGAATG
*
33108479 AAATACCCCCGAAGGGAAAAATG-ATCG
1 AAATACCCCCGAAGGGTAAAATGAAT-G
*
33108506 AAATA-CCCCTATAGGGTAAAATG-ATCG
1 AAATACCCCCGA-AGGGTAAAATGAAT-G
33108533 AAATACCCCC-ATAGGGTAA
1 AAATACCCCCGA-AGGGTAA
33108552 TGTTATACCC
Statistics
Matches: 351, Mismatches: 56, Indels: 34
0.80 0.13 0.08
Matches are distributed among these distances:
26 17 0.05
27 320 0.91
28 14 0.04
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATACCCCCGAAGGGTAAAATGAATG
Found at i:33108152 original size:54 final size:54
Alignment explanation
Indices: 33108088--33108551 Score: 397
Period size: 54 Copynumber: 8.6 Consensus size: 54
33108078 CCCCAAAATA
* * ** **
33108088 GGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGAATGAAATACCCTTAAAG
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATGAAATACCCCCAAAG
* *
33108142 GGTAAAATGA-CTGAAATACCCCC-ATAGGGTAAAATGATTGAAATACCCCCATAG
1 GGTAAAATGATC-GAAATACCCCCGA-AGGGTAAAATGAATGAAATACCCCCAAAG
* * * * * *
33108196 GGTAAAATTA-CTAAAATA-CCCCAATAGGATAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGATC-GAAATACCCCCGA-AGGGTAAAATGAATGAAATACCCCCAAAG
* * * *
33108250 GATAAAATGATC-AAATTACCCTCGAAGGGTAAAATGACTGAATTACCCCCAAAG
1 GGTAAAATGATCGAAA-TACCCCCGAAGGGTAAAATGAATGAAATACCCCCAAAG
* * * * ** * *
33108304 GGTAAAACGATCGAATTACCCCCAAAGGGTAAAACGACCGAATTACCCTCAAAG
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATGAAATACCCCCAAAG
* * * * * *
33108358 GGTAAAATTATCGAAATACCCTCGAAAGGTAAAAT-TATCGAAATACCCTCGAAG
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAAT-GAAATACCCCCAAAG
* * * * * *
33108412 GGTAAAATGATTGAAATACCCCCGAAAGGTAAAATG-ATCTAAATACTCTCATAG
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAAT-GAAATACCCCCAAAG
* * * * *
33108466 GATAAAATGACCGAAATACCCCCGAAGGGAAAAATG-ATCGAAATACCCCTATAG
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAAT-GAAATACCCCCAAAG
33108520 GGTAAAATGATCGAAATACCCCC-ATAGGGTAA
1 GGTAAAATGATCGAAATACCCCCGA-AGGGTAA
33108552 TGTTATACCC
Statistics
Matches: 343, Mismatches: 57, Indels: 20
0.82 0.14 0.05
Matches are distributed among these distances:
53 10 0.03
54 326 0.95
55 7 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (54 bp):
GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATGAAATACCCCCAAAG
Found at i:33108177 original size:81 final size:81
Alignment explanation
Indices: 33108088--33108551 Score: 405
Period size: 81 Copynumber: 5.7 Consensus size: 81
33108078 CCCCAAAATA
* * ** *
33108088 GGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGAAT-GAAATACCCTTAAAGGGTAAAATGA
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATCGAAATACCCTCAAAGGGTAAAATGA
33108152 CTGAAATACCCCCATAG
66 CTGAAATACCCCCA-AG
* * * * *
33108169 GGTAAAATGATTGAAATACCCCC-ATAGGGTAAAATTACT-AAAATACCC-CAATAGGATAAAAT
1 GGTAAAATGATCGAAATACCCCCGA-AGGGTAAAATGAATCGAAATACCCTCAA-AGGGTAAAAT
33108231 GACTGAAATACCCCCATAG
64 GACTGAAATACCCCCA-AG
* * * * * *
33108250 GATAAAATGATC-AAATTACCCTCGAAGGGTAAAATGACT-GAATTACCCCCAAAGGGTAAAACG
1 GGTAAAATGATCGAAA-TACCCCCGAAGGGTAAAATGAATCGAAATACCCTCAAAGGGTAAAATG
*
33108313 A-TCGAATTACCCCCAAAG
65 ACT-GAAATACCCCC-AAG
* * * * * * *
33108331 GGTAAAACGACCGAATTACCCTCAAAGGGTAAAAT-TATCGAAATACCCTCGAAA-GGTAAAATT
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATCGAAATACCCTC-AAAGGGTAAAATG
*
33108394 A-TCGAAATACCCTCGAAG
65 ACT-GAAATACCC-CCAAG
* * * * * *
33108412 GGTAAAATGATTGAAATACCCCCGAAAGGTAAAATG-ATCTAAATACTCTCATAGGATAAAATGA
1 GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATCGAAATACCCTCAAAGGGTAAAATGA
*
33108476 CCGAAATACCCCCGAAG
66 CTGAAATACCCCC-AAG
* * * *
33108493 GGAAAAATGATCGAAATA-CCCCTATAGGGTAAAATG-ATCGAAATACCCCCATAGGGTAA
1 GGTAAAATGATCGAAATACCCCCGA-AGGGTAAAATGAATCGAAATACCCTCAAAGGGTAA
33108552 TGTTATACCC
Statistics
Matches: 313, Mismatches: 54, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
80 16 0.05
81 286 0.91
82 11 0.04
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (81 bp):
GGTAAAATGATCGAAATACCCCCGAAGGGTAAAATGAATCGAAATACCCTCAAAGGGTAAAATGA
CTGAAATACCCCCAAG
Found at i:33108839 original size:26 final size:26
Alignment explanation
Indices: 33108785--33108839 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
33108775 TTTGCCATAT
* * * *
33108785 ATACTGTTACTGGAAGCTTTGTTGTG
1 ATACTGATACTGGAAGCTCTGCTGCG
*
33108811 ATACTGATACTGGCAGCTCTGCTGCG
1 ATACTGATACTGGAAGCTCTGCTGCG
33108837 ATA
1 ATA
33108840 TTGGTGTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (26 bp):
ATACTGATACTGGAAGCTCTGCTGCG
Found at i:33108989 original size:28 final size:28
Alignment explanation
Indices: 33108941--33109057 Score: 166
Period size: 28 Copynumber: 4.2 Consensus size: 28
33108931 TATTGCACTG
33108941 CACTG-TTACTGTATTGGGCTAAGGCCCA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
* *
33108969 TATTGATTCTGTATTGGGCTAAGGCCCA
1 CACTGATTCTGTATTGGGCTAAGGCCCA
33108997 CACTG-TTACTGTATTGGGCTAAGGCCCA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
* *
33109025 CACTAATTTTGTATTGGGCTAAGGCCCA
1 CACTGATTCTGTATTGGGCTAAGGCCCA
33109053 CACTG
1 CACTG
33109058 TACTGTCACT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 73 0.92
29 4 0.05
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (28 bp):
CACTGATTCTGTATTGGGCTAAGGCCCA
Found at i:33109038 original size:56 final size:56
Alignment explanation
Indices: 33108941--33109063 Score: 203
Period size: 56 Copynumber: 2.2 Consensus size: 56
33108931 TATTGCACTG
* * *
33108941 CACTGTTACTGTATTGGGCTAAGGCCCATATTGATTCTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCACACTAATTCTGTATTGGGCTAAGGCCCA
*
33108997 CACTGTTACTGTATTGGGCTAAGGCCCACACTAATTTTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCACACTAATTCTGTATTGGGCTAAGGCCCA
33109053 CACTG-TACTGT
1 CACTGTTACTGT
33109064 CACTGAATAG
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
55 6 0.10
56 57 0.90
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (56 bp):
CACTGTTACTGTATTGGGCTAAGGCCCACACTAATTCTGTATTGGGCTAAGGCCCA
Found at i:33110750 original size:48 final size:49
Alignment explanation
Indices: 33110698--33110794 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
33110688 TATAGTGATT
* *
33110698 TAAAA-CCATCGTTGTCGGGCTACTCGAGATGGTAGAA-ATTGCAAATAG
1 TAAAAGCCATCGTTGTCGGGCCACCCGAGATGGTAGAATA-TGCAAATAG
33110746 TAAAAGCCATCGTTGTCGGGCCACCCGAGATGGTAGAATATGCAAATAG
1 TAAAAGCCATCGTTGTCGGGCCACCCGAGATGGTAGAATATGCAAATAG
33110795 CCACCTGGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 5 0.11
49 39 0.87
50 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (49 bp):
TAAAAGCCATCGTTGTCGGGCCACCCGAGATGGTAGAATATGCAAATAG
Found at i:33114589 original size:18 final size:18
Alignment explanation
Indices: 33114562--33114617 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
33114552 CGATCCCGGG
*
33114562 CCTTTGCTCTCTCCCTGTC
1 CCTTT-CTCTGTCCCTGTC
* *
33114581 TCTTTCTCTGTCCCTCTC
1 CCTTTCTCTGTCCCTGTC
*
33114599 CCTTTCCCTGTCCCTGTC
1 CCTTTCTCTGTCCCTGTC
33114617 C
1 C
33114618 TTGCTCTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
18 27 0.87
19 4 0.13
ACGTcount: A:0.00, C:0.48, G:0.09, T:0.43
Consensus pattern (18 bp):
CCTTTCTCTGTCCCTGTC
Found at i:33116229 original size:16 final size:16
Alignment explanation
Indices: 33116180--33116231 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
33116170 AAAAATTATG
* * *
33116180 TTTTCCATCCATCTAG
1 TTTTCCATCCTTCCAA
* *
33116196 TTTTCTACCCTT-CAA
1 TTTTCCATCCTTCCAA
33116211 TTTTCCATCCTTCCAA
1 TTTTCCATCCTTCCAA
33116227 TTTTC
1 TTTTC
33116232 TTTTCACTCT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.17, C:0.33, G:0.02, T:0.48
Consensus pattern (16 bp):
TTTTCCATCCTTCCAA
Found at i:33120543 original size:16 final size:16
Alignment explanation
Indices: 33120522--33120552 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33120512 TTTTCTTATG
*
33120522 ATATAAATTACATAAT
1 ATATAAAATACATAAT
33120538 ATATAAAATACATAA
1 ATATAAAATACATAA
33120553 ATAAATATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATAAAATACATAAT
Found at i:33124313 original size:24 final size:25
Alignment explanation
Indices: 33124286--33124343 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
33124276 CAGCTCGAAA
*
33124286 GAGCATCCCGAT-ATTAGCTCTCAT
1 GAGCATCCCGATAAATAGCTCTCAT
* *
33124310 GAGCATCTCGATAAATGGCTCTCAT
1 GAGCATCCCGATAAATAGCTCTCAT
*
33124335 GAGCTTCCC
1 GAGCATCCC
33124344 ACTATATGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (25 bp):
GAGCATCCCGATAAATAGCTCTCAT
Found at i:33124461 original size:26 final size:26
Alignment explanation
Indices: 33124425--33124514 Score: 112
Period size: 26 Copynumber: 3.5 Consensus size: 26
33124415 GTAACTTTTA
*
33124425 TGAGCGTCCCG-TTATATGGCTCTTCG
1 TGAGCTTCCCGATTA-ATGGCTCTTCG
* *
33124451 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAATGGCTCTTCG
* *
33124477 TGAGCTTCCTGATTAATGGCTCTCCG
1 TGAGCTTCCCGATTAATGGCTCTTCG
33124503 -GAGCTTCCCGAT
1 TGAGCTTCCCGAT
33124515 ATGGCTTGCT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 11 0.20
26 41 0.75
27 3 0.05
ACGTcount: A:0.16, C:0.27, G:0.24, T:0.33
Consensus pattern (26 bp):
TGAGCTTCCCGATTAATGGCTCTTCG
Found at i:33128256 original size:13 final size:13
Alignment explanation
Indices: 33128238--33128262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33128228 ACCCCATGAA
33128238 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
33128251 TTTCTTCTTCTT
1 TTTCTTCTTCTT
33128263 TAAATTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:33129078 original size:15 final size:15
Alignment explanation
Indices: 33129058--33129087 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33129048 CATATTTTAA
33129058 ATTTTTTTAAATAAT
1 ATTTTTTTAAATAAT
*
33129073 ATTTTTTTCAATAAT
1 ATTTTTTTAAATAAT
33129088 TTTCATTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTTTTTAAATAAT
Found at i:33129693 original size:24 final size:24
Alignment explanation
Indices: 33129643--33129694 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
33129633 TAGTAAATTC
* *
33129643 TTTATAATTTTATATAATTTAATA
1 TTTATAATTTTATAAAATTTAACA
*
33129667 TTTATAGATTTT-TAAAATTTTACA
1 TTTATA-ATTTTATAAAATTTAACA
33129691 TTTA
1 TTTA
33129695 ATGGGTGCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTATAATTTTATAAAATTTAACA
Found at i:33131449 original size:5 final size:5
Alignment explanation
Indices: 33131439--33131467 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
33131429 ATTATAACGG
33131439 TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTAT
33131468 ATAAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:33131808 original size:7 final size:6
Alignment explanation
Indices: 33131775--33131807 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
33131765 TTTTGGGTTT
33131775 TTAGGG TTAGGG TTAGGG TTAGGG TTTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG -TTAGGG TT
33131808 TTTAGGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (6 bp):
TTAGGG
Found at i:33132293 original size:125 final size:124
Alignment explanation
Indices: 33131995--33132405 Score: 714
Period size: 124 Copynumber: 3.3 Consensus size: 124
33131985 ATTTATTAAG
* *
33131995 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACATTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* *
33132060 GTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
66 GTTTCTGAGCAAATAGTCT-AAAAACGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
*
33132120 GAAATCGCTCCCACGTGGACGCGCTTTGGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
33132185 GTTTCTGAGCAAATAGTCTAAAAACGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
66 GTTTCTGAGCAAATAGTCTAAAAACGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
33132244 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
*
33132309 GTTTCTGAGCAAATAGTCTAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTCTAAAAACGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
* * * * *
33132368 GAAATCTCTCCTACATGGACGCGTTTTTGCTATAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
33132406 CATGTTTGGG
Statistics
Matches: 274, Mismatches: 12, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
124 194 0.71
125 80 0.29
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (124 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
GTTTCTGAGCAAATAGTCTAAAAACGCTTCAAGCAGGATGCTTTATCAGACGAATTTCT
Found at i:33133705 original size:114 final size:114
Alignment explanation
Indices: 33133502--33134327 Score: 1191
Period size: 114 Copynumber: 7.3 Consensus size: 114
33133492 AACCGATTTT
* *
33133502 GTATTAGGGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGAAA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
*
33133567 CTTCGGTGACATTAGTGGCATTTTTCGAATAGCGCCGCTAATAATATGA
66 CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* *
33133616 GTATTAGCGGCGTTTCTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
*
33133681 CTTCGGTGACATTAGTGGCGTTTTTTGAATAGCGCCGCTAATAATATGA
66 CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* * *
33133730 GTATTAGCGGCGTTTCTGTAAAAATGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGAAA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
*
33133795 CTTCGGTGACATTA-TCGGCATTTTTCGAATAGCGCCGCTAATAATATGA
66 CTTCGGTGACATTAGT-GGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* * * *
33133844 GTATTAGTGGCGTTTCTATAAAAATGCCGCAAAAACTAAACCCCAGACGATGTCGTTTGGAGACA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
* *
33133909 CTTCGGTGACTTTAGTGGCGTTTTTCTAATAGCGCCGCTAATAATATGA
66 CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* * * * **
33133958 GTATTAGCGGCGTTTCTACAAAAACGCCGGAAAAACTAAAACCCAAACGACTTTATTTGGAGACA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
* *
33134023 CTTCGGTGACATTAGTGGCGTTTTCCGAGTAGCGCCGCTAATAATATGA
66 CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
*
33134072 GTATTAGC-G-G----TATACAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTCTGGAGAC
1 GTATTAGCGGCGTTTCTATA-AAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGAC
* * * *
33134131 ACTTCGGTGATATTAATGGCATTTTTTGAATAGCGCCGCTAATAATATGA
65 ACTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* * *
33134181 GTATTAGCGGTGTTTCTATAAAAATGCCGCAAAAACTAAACCCCAGACGACGTCGTTTGGAGACA
1 GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
* * * * *
33134246 CTTCGGTGACTTTAGTGGCGTTTTTAGATTAGCGCCACGAATAATAT-A
66 CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
* * * * *
33134294 GGTTTTAGCGGCGTTTTTGTTAAAGCGCCGCAAA
1 -GTATTAGCGGCGTTTCTATAAAAACGCCGCAAA
33134328 TGTTCTGGGT
Statistics
Matches: 640, Mismatches: 62, Indels: 20
0.89 0.09 0.03
Matches are distributed among these distances:
108 3 0.00
109 90 0.14
110 1 0.00
111 1 0.00
112 1 0.00
113 3 0.00
114 536 0.84
115 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (114 bp):
GTATTAGCGGCGTTTCTATAAAAACGCCGCAAAAACTAAAACCCAGACGACGTCGTTTGGAGACA
CTTCGGTGACATTAGTGGCGTTTTTCGAATAGCGCCGCTAATAATATGA
Found at i:33135184 original size:15 final size:16
Alignment explanation
Indices: 33135164--33135202 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
33135154 ACGTTAGTGG
33135164 TTAAGAG-TTAGGGAT
1 TTAAGAGTTTAGGGAT
*
33135179 TTAAGAGGTTTAGGGTT
1 TTAAGA-GTTTAGGGAT
33135196 TTAAGAG
1 TTAAGAG
33135203 GGTCGGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 2 0.10
17 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (16 bp):
TTAAGAGTTTAGGGAT
Found at i:33135193 original size:17 final size:17
Alignment explanation
Indices: 33135171--33135203 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33135161 TGGTTAAGAG
33135171 TTAGGGATTTAAGAGGT
1 TTAGGGATTTAAGAGGT
*
33135188 TTAGGGTTTTAAGAGG
1 TTAGGGATTTAAGAGG
33135204 GTCGGATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (17 bp):
TTAGGGATTTAAGAGGT
Found at i:33135442 original size:9 final size:9
Alignment explanation
Indices: 33135428--33135926 Score: 113
Period size: 9 Copynumber: 52.6 Consensus size: 9
33135418 ATTAATATTA
33135428 TACATAAAT
1 TACATAAAT
*
33135437 TACATAACT
1 TACATAAAT
33135446 TA-ATTAATTAT
1 TACA-TAA--AT
*
33135457 TACACATAAT
1 TACATA-AAT
*
33135467 TA-ATAAAA
1 TACATAAAT
*
33135475 TACATAACT
1 TACATAAAT
*
33135484 TACATAACT
1 TACATAAAT
*
33135493 TAC--AACT
1 TACATAAAT
*
33135500 TACATAACT
1 TACATAAAT
33135509 TACATTTTTATAAT
1 TACA----TA-AAT
33135523 TATTCATAAAT
1 TA--CATAAAT
*
33135534 TACATAACT
1 TACATAAAT
33135543 TACATTAATATT
1 TACA-TAA-A-T
33135555 ATACATAAAT
1 -TACATAAAT
*
33135565 TACATAACT
1 TACATAAAT
*
33135574 TA-ATTAAT
1 TACATAAAT
*
33135582 TA-ATAAAA
1 TACATAAAT
*
33135590 TACATAACT
1 TACATAAAT
*
33135599 TACATAACT
1 TACATAAAT
*
33135608 TAC--AACT
1 TACATAAAT
*
33135615 TACATAACT
1 TACATAAAT
33135624 TACATTTTTATAAT
1 TACA----TA-AAT
33135638 TATTCATAAAT
1 TA--CATAAAT
*
33135649 TACATAACT
1 TACATAAAT
33135658 TACATTAATATT
1 TACA-TAA-A-T
33135670 ATACATAAAT
1 -TACATAAAT
*
33135680 TACATAACT
1 TACATAAAT
*
33135689 TA-ATTAAT
1 TACATAAAT
33135697 TA-AT--A-
1 TACATAAAT
33135702 TACATAAAT
1 TACATAAAT
33135711 TACATAACTAAT
1 TACAT-A--AAT
33135723 TACATTAATATT
1 TACA-TAA-A-T
33135735 ATACATAAAT
1 -TACATAAAT
*
33135745 TACATAACT
1 TACATAAAT
** *
33135754 T-TGTTAAT
1 TACATAAAT
*
33135762 TA-AT-ATT
1 TACATAAAT
*
33135769 ATACATAACT
1 -TACATAAAT
*
33135779 TACATTAGTATT
1 TACA-TA--AAT
33135791 ATACATAAAT
1 -TACATAAAT
*
33135801 TACATAACT
1 TACATAAAT
33135810 TA-ATTAATTAT
1 TACA-TAA--AT
33135821 TACACATAAAT
1 T--ACATAAAT
* *
33135832 TACATTACT
1 TACATAAAT
33135841 TACATTAATATT
1 TACA-TAA-A-T
33135853 ATACATAAAT
1 -TACATAAAT
*
33135863 TACATAACT
1 TACATAAAT
*
33135872 TA-ATTAAT
1 TACATAAAT
*
33135880 TA-ATAAAA
1 TACATAAAT
*
33135888 TACATAACT
1 TACATAAAT
*
33135897 TACATAACT
1 TACATAAAT
*
33135906 TAC--AACT
1 TACATAAAT
*
33135913 TACATAACT
1 TACATAAAT
33135922 TACAT
1 TACAT
33135927 TTTTTTTTTT
Statistics
Matches: 379, Mismatches: 46, Indels: 130
0.68 0.08 0.23
Matches are distributed among these distances:
5 2 0.01
6 3 0.01
7 23 0.06
8 46 0.12
9 181 0.48
10 24 0.06
11 24 0.06
12 34 0.09
13 29 0.08
14 9 0.02
16 4 0.01
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (9 bp):
TACATAAAT
Found at i:33135499 original size:16 final size:16
Alignment explanation
Indices: 33135480--33135512 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33135470 TAAAATACAT
33135480 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135496 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135512 A
1 A
33135513 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:33135537 original size:34 final size:34
Alignment explanation
Indices: 33135499--33135754 Score: 160
Period size: 34 Copynumber: 7.3 Consensus size: 34
33135489 AACTTACAAC
* *
33135499 TTACATAACTTACATTTTTATAATTATTCATAAA
1 TTACATAACTTACATTTTAATAATTATACATAAA
33135533 TTACATAACTTACA--TTAAT-ATTATACATAAA
1 TTACATAACTTACATTTTAATAATTATACATAAA
* *
33135564 TTACATAACTTA-ATTAATTAATAA-AATACATAAC
1 TTACATAACTTACATT--TTAATAATTATACATAAA
** *
33135598 TTACATAACTTACAACTTACATAACT-TACATTTTTATAA
1 TTACATAACTTACATTTTA-ATAATTATACA----TA-AA
* *
33135637 TTATTCATAAATTACATAACTTACATTAATATTATACATAAA
1 TTA--CATAACTTACAT--TTTA-A-T-A-ATTATACATAAA
33135679 TTACATAACTTA-A--TTAATTAA-TATACATAAA
1 TTACATAACTTACATTTTAA-TAATTATACATAAA
33135710 TTACATAAC-TA-ATTACATTAAT-ATTATACATAAA
1 TTACATAACTTACATT---TTAATAATTATACATAAA
33135744 TTACATAACTT
1 TTACATAACTT
33135755 TGTTAATTAA
Statistics
Matches: 182, Mismatches: 12, Indels: 55
0.73 0.05 0.22
Matches are distributed among these distances:
30 4 0.02
31 42 0.23
32 5 0.03
33 5 0.03
34 70 0.38
35 10 0.05
38 2 0.01
39 5 0.03
40 8 0.04
41 10 0.05
42 5 0.03
43 8 0.04
44 1 0.01
45 1 0.01
46 2 0.01
47 4 0.02
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (34 bp):
TTACATAACTTACATTTTAATAATTATACATAAA
Found at i:33135608 original size:115 final size:115
Alignment explanation
Indices: 33135463--33136141 Score: 551
Period size: 115 Copynumber: 5.9 Consensus size: 115
33135453 TTATTACACA
33135463 TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
1 TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
33135528 ATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
66 ATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
33135578 TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
1 TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
33135643 ATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
66 ATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
* * *
33135693 TAATTAAT---ATACATAAATTACATAACTAATTACATTAATATTATACATAAATTACATAACTT
1 TAATTAATAAAATACATAACTTACATAAC---TTAC----A-ACT-TACATAACTTACAT---TT
* * *
33135755 TGT-TAATTAAT-AT-TA-TACATAACTTACATTAGTATTATACATAAATTACATAACTTAAT
54 T-TATAATTATTCATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
* * * * * * * ***
33135814 TAATTATTACACATAAATTACATTAC-TTACATTA-ATATTATACATAAATTACATAACT-TAAT
1 TAATTAATA-AAATACATAAC-TTACATAAC-TTACA-ACT-TACATAACTTACATTTTTATAAT
* * * *
33135876 TAATTAATAAAATACATAACTTACA-T-A-ACT-TAC--AACTTACATAACTTACATTT
61 T-ATTCATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA-A--T
** ** * * * * * * * ** * *
33135929 TTTTTTTTAATTATTCGTAAATTACATAACTT--AATTTTCATAA--TAAATAACTTA-CATAAC
1 TAATTAATAA-AATACATAACTTACATAACTTACAACTTACATAACTTACAT-TTTTATAATTA-
* * * * *
33135989 TT-ACAACTTACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGT
63 TTCATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
** *
33136041 TAATTAATATTATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTC
1 TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
* *
33136106 GTAAATTACATAACTTAC-TTAATTTTCATA-ATAAAT
66 ATAAATTACATAACTTACATTAATATT-ATACATAAAT
33136142 AACTTACATC
Statistics
Matches: 458, Mismatches: 63, Indels: 87
0.75 0.10 0.14
Matches are distributed among these distances:
109 21 0.05
110 7 0.02
111 25 0.05
112 42 0.09
113 14 0.03
114 32 0.07
115 183 0.40
116 2 0.00
117 2 0.00
118 33 0.07
119 1 0.00
120 2 0.00
121 63 0.14
122 1 0.00
123 6 0.01
124 10 0.02
125 10 0.02
126 4 0.01
ACGTcount: A:0.45, C:0.13, G:0.01, T:0.41
Consensus pattern (115 bp):
TAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTATAATTATTC
ATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
Found at i:33135616 original size:16 final size:16
Alignment explanation
Indices: 33135595--33135627 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33135585 TAAAATACAT
33135595 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135611 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135627 A
1 A
33135628 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:33135748 original size:22 final size:22
Alignment explanation
Indices: 33135649--33135749 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 22
33135639 ATTCATAAAT
*
33135649 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
*
33135671 TACATAAATTACA-TAACT-TAA
1 TACATAAATTACATTAA-TATTA
*
33135692 TTA-ATTAATATACA-TAA-A-T-
1 -TACATAAAT-TACATTAATATTA
33135711 TACATAACTAATTACATTAATATTA
1 TACAT-A--AATTACATTAATATTA
33135736 TACATAAATTACAT
1 TACATAAATTACAT
33135750 AACTTTGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
21 14 0.23
22 36 0.58
23 1 0.02
24 2 0.03
25 5 0.08
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.39
Consensus pattern (22 bp):
TACATAAATTACATTAATATTA
Found at i:33135764 original size:34 final size:34
Alignment explanation
Indices: 33135636--33135783 Score: 186
Period size: 34 Copynumber: 4.5 Consensus size: 34
33135626 CATTTTTATA
*
33135636 ATTATTCATAAATTACATAAC---TTACATTAAT
1 ATTATACATAAATTACATAACTAATTACATTAAT
33135667 ATTATACATAAATTACATAACTTAATTA-ATT-A-
1 ATTATACATAAATTACATAAC-TAATTACATTAAT
33135699 A-TATACATAAATTACATAACTAATTACATTAAT
1 ATTATACATAAATTACATAACTAATTACATTAAT
**
33135732 ATTATACATAAATTACATAACTTTGTTA-ATTAAT
1 ATTATACATAAATTACATAAC-TAATTACATTAAT
*
33135766 ATTATACATAACTTACAT
1 ATTATACATAAATTACAT
33135784 TAGTATTATA
Statistics
Matches: 104, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
30 6 0.06
31 42 0.40
32 2 0.02
33 2 0.02
34 45 0.43
35 7 0.07
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.41
Consensus pattern (34 bp):
ATTATACATAAATTACATAACTAATTACATTAAT
Found at i:33135867 original size:22 final size:22
Alignment explanation
Indices: 33135760--33135805 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
33135750 AACTTTGTTA
*
33135760 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAAATTAC
*
33135782 ATTAGTATTATACATAAATTAC
1 ATTAATATTATACATAAATTAC
33135804 AT
1 AT
33135806 AACTTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (22 bp):
ATTAATATTATACATAAATTAC
Found at i:33135914 original size:16 final size:16
Alignment explanation
Indices: 33135893--33135925 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33135883 TAAAATACAT
33135893 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135909 AACTTACATAACTTAC
1 AACTTACATAACTTAC
33135925 A
1 A
33135926 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:33135926 original size:34 final size:33
Alignment explanation
Indices: 33135791--33135907 Score: 118
Period size: 31 Copynumber: 3.6 Consensus size: 33
33135781 CATTAGTATT
*
33135791 ATACATAAATTACATAACTTAATTAATT-AT--T
1 ATACATAAATTACATAACTTAA-TAATTAATAAA
* * * **
33135822 ACACATAAATTACATTACTT-A-CATTAATATT
1 ATACATAAATTACATAACTTAATAATTAATAAA
33135853 ATACATAAATTACATAACTTAATTAATTAATAAA
1 ATACATAAATTACATAACTTAA-TAATTAATAAA
*
33135887 ATACATAACTTACATAACTTA
1 ATACATAAATTACATAACTTA
33135908 CAACTTACAT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.04
29 2 0.03
30 1 0.01
31 37 0.52
32 1 0.01
34 27 0.38
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.38
Consensus pattern (33 bp):
ATACATAAATTACATAACTTAATAATTAATAAA
Found at i:33135987 original size:9 final size:9
Alignment explanation
Indices: 33135975--33136194 Score: 108
Period size: 9 Copynumber: 25.3 Consensus size: 9
33135965 TTCATAATAA
33135975 ATAACTTAC
1 ATAACTTAC
33135984 ATAACTTAC
1 ATAACTTAC
33135993 --AACTTAC
1 ATAACTTAC
33136000 ATAACTTAC
1 ATAACTTAC
*
33136009 ATTAATATTATAC
1 A-T-A-ACT-TAC
* *
33136022 TTAAATTAC
1 ATAACTTAC
* *
33136031 ATAAGTTAG
1 ATAACTTAC
*
33136040 TTAA-TTA-
1 ATAACTTAC
*
33136047 AT-ATTATAC
1 ATAACT-TAC
33136056 ATAACTTAC
1 ATAACTTAC
33136065 ATAACTTAC
1 ATAACTTAC
33136074 --AACTTAC
1 ATAACTTAC
33136081 ATAACTTAC
1 ATAACTTAC
***
33136090 ATTTTTTTA-
1 A-TAACTTAC
*
33136099 ATTA-TT-C
1 ATAACTTAC
* *
33136106 GTAAATTAC
1 ATAACTTAC
33136115 ATAACTTAC
1 ATAACTTAC
* * *
33136124 TTAATTTTC
1 ATAACTTAC
*
33136133 ATAA--TAA
1 ATAACTTAC
33136140 ATAACTTAC
1 ATAACTTAC
*
33136149 ATCACTTAC
1 ATAACTTAC
33136158 --AACTTAC
1 ATAACTTAC
*
33136165 ATAACTTAT
1 ATAACTTAC
*
33136174 ATGACTTAC
1 ATAACTTAC
33136183 ATAACTTAC
1 ATAACTTAC
33136192 ATA
1 ATA
33136195 GCATAATTTT
Statistics
Matches: 161, Mismatches: 30, Indels: 40
0.70 0.13 0.17
Matches are distributed among these distances:
6 1 0.01
7 31 0.19
8 9 0.06
9 103 0.64
10 9 0.06
11 2 0.01
12 3 0.02
13 3 0.02
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (9 bp):
ATAACTTAC
Found at i:33135997 original size:84 final size:81
Alignment explanation
Indices: 33135858--33136172 Score: 377
Period size: 84 Copynumber: 3.8 Consensus size: 81
33135848 ATATTATACA
*
33135858 TAAATTACATAACTTAATTAATTAATAAAATACATAACTTACATAACTTACAACTTACATAACTT
1 TAAATTACATAACTTAATT-ATTAAT--AATAAATAACTTACATAACTTACAACTTACATAACTT
33135923 ACATTTTTTTTTTTAATTATTCG
63 ACA----TTTTTTTAATTATTCG
*
33135946 TAAATTACATAACTTAATT-TTCATAATAAATAACTTACATAACTTACAACTTACATAACTTACA
1 TAAATTACATAACTTAATTATTAATAATAAATAACTTACATAACTTACAACTTACATAACTTACA
** * *
33136010 --TTAAT-ATTATACT
66 TTTTTTTAATTATTCG
* * *
33136023 TAAATTACATAAGTTAGTTAATTAATATTATACATAACTTACATAACTTACAACTTACATAACTT
1 TAAATTACATAACTTAATT-ATTAATA--ATAAATAACTTACATAACTTACAACTTACATAACTT
33136088 ACATTTTTTTAATTATTCG
63 ACATTTTTTTAATTATTCG
* * *
33136107 TAAATTACATAACTTACTTAATTTTCATAATAAATAACTTACATCACTTACAACTTACATAACTT
1 TAAATTACATAACTTAATT-A--TTAATAATAAATAACTTACATAACTTACAACTTACATAACTT
33136172 A
63 A
33136173 TATGACTTAC
Statistics
Matches: 199, Mismatches: 19, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
77 23 0.12
78 3 0.02
79 5 0.03
81 38 0.19
83 3 0.02
84 99 0.50
86 9 0.05
88 19 0.10
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (81 bp):
TAAATTACATAACTTAATTATTAATAATAAATAACTTACATAACTTACAACTTACATAACTTACA
TTTTTTTAATTATTCG
Found at i:33136009 original size:25 final size:25
Alignment explanation
Indices: 33135975--33136194 Score: 96
Period size: 25 Copynumber: 8.5 Consensus size: 25
33135965 TTCATAATAA
33135975 ATAACTTACATAACTTACAACTTAC
1 ATAACTTACATAACTTACAACTTAC
* *
33136000 ATAACTTACATTAATATTATACTTAAATTAC
1 ATAACTTACA-T-A-ACT-TAC--AACTTAC
* ** *
33136031 ATAAGTTAGTTAA-TTA-ATATTATAC
1 ATAACTTACATAACTTACA-ACT-TAC
33136056 ATAACTTACATAACTTACAACTTAC
1 ATAACTTACATAACTTACAACTTAC
** **
33136081 ATAACTTACAT-TTTTTTAA-TTATTC
1 ATAACTTACATAACTTACAACTTA--C
* * * *
33136106 GTAAATTACATAACTTACTTAATTTTC
1 ATAACTTACATAACTTAC--AACTTAC
*
33136133 ATAA--TAAATAACTTACATCACTTAC
1 ATAACTTACATAACTTACA--ACTTAC
*
33136158 --AACTTACATAACTTATATGACTTAC
1 ATAACTTACATAACTTACA--ACTTAC
33136183 ATAACTTACATA
1 ATAACTTACATA
33136195 GCATAATTTT
Statistics
Matches: 145, Mismatches: 28, Indels: 42
0.67 0.13 0.20
Matches are distributed among these distances:
23 7 0.05
24 6 0.04
25 80 0.55
26 10 0.07
27 17 0.12
28 5 0.03
29 6 0.04
30 1 0.01
31 13 0.09
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (25 bp):
ATAACTTACATAACTTACAACTTAC
Found at i:33136017 original size:165 final size:163
Alignment explanation
Indices: 33135831--33136172 Score: 553
Period size: 165 Copynumber: 2.1 Consensus size: 163
33135821 TACACATAAA
*
33135831 TTACATTACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAAAATACATAAC
1 TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAAAATACATAAC
33135896 TTACATAACTTACAACTTACATAACTTACATTTTTTTTTTTAATTATTCGTAAATTACAT-A-AC
66 TTACATAACTTACAACTTACATAACTTACA----TTTTTTTAATTATTCGTAAATTACATAATAC
33135959 TTAATTTTCATAATAAATAACTTACATAACTTACAAC
127 TTAATTTTCATAATAAATAACTTACATAACTTACAAC
* * * **
33135996 TTACATAACTTACATTAATATTATACTTAAATTACATAAGTTAGTTAATTAATATTATACATAAC
1 TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAAAATACATAAC
33136061 TTACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAACTTACTT
66 TTACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAA--TACTT
*
33136126 AATTTTCATAATAAATAACTTACATCACTTACAAC
129 AATTTTCATAATAAATAACTTACATAACTTACAAC
33136161 TTACATAACTTA
1 TTACATAACTTA
33136173 TATGACTTAC
Statistics
Matches: 166, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
161 26 0.16
162 1 0.01
165 139 0.84
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (163 bp):
TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATAAAATACATAAC
TTACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCGTAAATTACATAATACTTAA
TTTTCATAATAAATAACTTACATAACTTACAAC
Done.