Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 105 of 161
Found at i:33136091 original size:34 final size:33
Alignment explanation
Indices: 33136053--33136194 Score: 76
Period size: 34 Copynumber: 4.2 Consensus size: 33
33136043 ATTAATATTA
33136053 TACATAACTTACATAACTTACAACTTACATAACT
1 TACATAACTTACATAA-TTACAACTTACATAACT
*** * *
33136087 TACATTTTTTTA-ATTATT-CGTAAATTACATAACT
1 TACA-TAACTTACATAATTAC--AACTTACATAACT
* * * * * *
33136121 TACTTAATTTTCATAATAAATAACTTACATCACT
1 TACATAACTTACATAAT-TACAACTTACATAACT
*
33136155 TAC--AACTTACATAACTTATATGACTTACATAACT
1 TACATAACTTACATAA-TTACA--ACTTACATAACT
33136189 TACATA
1 TACATA
33136195 GCATAATTTT
Statistics
Matches: 79, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
32 13 0.16
33 7 0.09
34 54 0.68
35 4 0.05
36 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.01, T:0.39
Consensus pattern (33 bp):
TACATAACTTACATAATTACAACTTACATAACT
Found at i:33136225 original size:25 final size:25
Alignment explanation
Indices: 33136196--33136251 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
33136186 ACTTACATAG
* *
33136196 CATAATTTTCATAATACACAACTTA
1 CATAATTTGCATAATAAACAACTTA
** *
33136221 CATAATTTGGGTAATAAATAACTTA
1 CATAATTTGCATAATAAACAACTTA
33136246 CATAAT
1 CATAAT
33136252 ACATAACTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (25 bp):
CATAATTTGCATAATAAACAACTTA
Found at i:33136251 original size:16 final size:16
Alignment explanation
Indices: 33136232--33136265 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
33136222 ATAATTTGGG
33136232 TAATAAATAACTTACA
1 TAATAAATAACTTACA
*
33136248 TAATACATAACTTACA
1 TAATAAATAACTTACA
33136264 TA
1 TA
33136266 GCTTAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAAATAACTTACA
Found at i:33141785 original size:66 final size:65
Alignment explanation
Indices: 33141678--33141848 Score: 191
Period size: 66 Copynumber: 2.6 Consensus size: 65
33141668 GAGCAAATTA
* * * * *
33141678 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAAATATGAAGAACTCCAG
1 CACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAAAAAATATGAAGAACTCCAG
* ** *
33141743 CTACAACTGAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAAAAAATATGAAGAACTCCA
33141808 G
65 G
* * * *
33141809 CAGTAGCTTAAAGCAGATGCGGCAGC-AAGAGAAGCAGAGG
1 CA-CAACTTAAAGCAGATGCAGCAGCGAA-AGAAGCTGAGG
33141849 CGGTAGCGAG
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
65 4 0.04
66 85 0.96
ACGTcount: A:0.42, C:0.19, G:0.27, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAAAAAATATGAAGAACTCCAG
Found at i:33141843 original size:21 final size:21
Alignment explanation
Indices: 33141819--33141952 Score: 79
Period size: 21 Copynumber: 6.4 Consensus size: 21
33141809 CAGTAGCTTA
*
33141819 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* *
33141840 AAGCAGAGGCGGTAGCGAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * * * *
33141861 AAGTACAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* *** * * *
33141882 AAGCAAAGGCTAAAACGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* * *
33141903 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* * *
33141924 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
33141945 AAGCAGAG
1 AAGCAGAG
33141953 TAGCGTTAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 96 1.00
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:33141950 original size:42 final size:42
Alignment explanation
Indices: 33141819--33141952 Score: 151
Period size: 42 Copynumber: 3.2 Consensus size: 42
33141809 CAGTAGCTTA
* * * * * * *
33141819 AAGCAGATGCGGCAGCAAGAGAAGCAGAGGCGGTAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCTGAAGCGAGGG
* * * * *
33141861 AAGTACAGGCTGCAGCGAGGGAAGCAAAGGCTAAAACGAGGG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCTGAAGCGAGGG
*
33141903 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCTGAAGCGAGGG
33141945 AAGCAGAG
1 AAGCAGAG
33141953 TAGCGTTAAA
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (42 bp):
AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCTGAAGCGAGGG
Found at i:33142423 original size:43 final size:43
Alignment explanation
Indices: 33142324--33142511 Score: 155
Period size: 43 Copynumber: 4.4 Consensus size: 43
33142314 GTCTTTGGTA
* * * * * **
33142324 AAAGCACCGCTAAAGAT-AAGGTTCTTTTGCGTCATTTATGGAA
1 AAAGCGCCGCTAAAGATCAAGG-TCTTTAGCGGCGTTTGTGGGG
* * * *
33142367 AAAGTGCCCCTAAAGATCATGGTCTTTCGCGGCGTTTGTGGGG
1 AAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTGTGGGG
* * * *
33142410 AAAGCGCCGCTAAAGATTAAGATCTTTAGTGGCGTTTGTGGTCG
1 AAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTGTGG-GG
* * * * * *
33142454 -AGGCGCCGCTATAGTTCAGGGTCTTTTGCGGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTGTGGGG
33142496 AAAGCGCCGCTAAAGA
1 AAAGCGCCGCTAAAGA
33142512 CCCTAATCTT
Statistics
Matches: 111, Mismatches: 31, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
43 107 0.96
44 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTGTGGGG
Found at i:33142436 original size:86 final size:86
Alignment explanation
Indices: 33142323--33142511 Score: 200
Period size: 86 Copynumber: 2.2 Consensus size: 86
33142313 CGTCTTTGGT
* * * * * *
33142323 AAAAGCACCGCTAAAGATAAGGTTCTTTTGCGTCATTTATGGAAAAAGTGCCCCTAAAGATCATG
1 AAAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCATTTATGGAAAAAGCGCCCCTAAAGATCAGG
33142388 GTCTTTCGCGGCGTTTGTGGG
66 GTCTTTCGCGGCGTTTGTGGG
* * * * *** * * * *
33142409 GAAAGCGCCGCTAAAGATTAA-GATCTTTAGTGGCGTTTGTGGTCGAGGCGCCGCTATAGTTCAG
1 AAAAGCGCCGCTAAAGA-TAAGGATCTTTAGCGGCATTTATGGAAAAAGCGCCCCTAAAGATCAG
*
33142473 GGTCTTTTGCGGCGTTTGTGGG
65 GGTCTTTCGCGGCGTTTGTGGG
33142495 AAAAGCGCCGCTAAAGA
1 AAAAGCGCCGCTAAAGA
33142512 CCCTAATCTT
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
86 80 0.96
87 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCATTTATGGAAAAAGCGCCCCTAAAGATCAGG
GTCTTTCGCGGCGTTTGTGGG
Found at i:33142522 original size:43 final size:43
Alignment explanation
Indices: 33142475--33142683 Score: 170
Period size: 43 Copynumber: 4.9 Consensus size: 43
33142465 TAGTTCAGGG
* * * * *
33142475 TCTTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTAA
1 TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* *
33142518 TCTTTAGCGGCGCTTGTCGCAAAAACGCTGCTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* * * * * * *
33142561 TCTTCAACAGCGAC-TCTCGGAAAAACGCCGTTAAAGACCCTGA
1 TCTTTAGCGGCG-CTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* * * * * *
33142604 TCTTTAGTGGCACTTCTAGTAAAAACGCCGCTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* * * * *
33142647 TCTTTAGCGCCGCTT-TCACTAAAGCGCCGCTATAGAC
1 TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGAC
33142684 AAACACCTTT
Statistics
Matches: 133, Mismatches: 31, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
42 17 0.13
43 115 0.86
44 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
Found at i:33142590 original size:86 final size:86
Alignment explanation
Indices: 33142493--33142650 Score: 235
Period size: 86 Copynumber: 1.8 Consensus size: 86
33142483 GGCGTTTGTG
* * * * *
33142493 GGAAAAGCGCCGCTAAAGACCCTAATCTTTAGCGGCGCTTGTCGCAAAAACGCTGCTAAAGACCC
1 GGAAAAACGCCGCTAAAGACCCTAATCTTTAGCGGCACTTCTAGCAAAAACGCCGCTAAAGACCC
33142558 TGATCTTCAACAGCGACTCTC
66 TGATCTTCAACAGCGACTCTC
* * * *
33142579 GGAAAAACGCCGTTAAAGACCCTGATCTTTAGTGGCACTTCTAGTAAAAACGCCGCTAAAGACCC
1 GGAAAAACGCCGCTAAAGACCCTAATCTTTAGCGGCACTTCTAGCAAAAACGCCGCTAAAGACCC
33142644 TGATCTT
66 TGATCTT
33142651 TAGCGCCGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 63 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (86 bp):
GGAAAAACGCCGCTAAAGACCCTAATCTTTAGCGGCACTTCTAGCAAAAACGCCGCTAAAGACCC
TGATCTTCAACAGCGACTCTC
Found at i:33142927 original size:29 final size:29
Alignment explanation
Indices: 33142885--33142940 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
33142875 TGAAACAACA
33142885 TAGCATCAATAACGGCGTTAACTATCAAG
1 TAGCATCAATAACGGCGTTAACTATCAAG
33142914 TAGCATCAATAACGGCGTTAACTATCA
1 TAGCATCAATAACGGCGTTAACTATCA
33142941 CGTGGTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (29 bp):
TAGCATCAATAACGGCGTTAACTATCAAG
Found at i:33145006 original size:46 final size:46
Alignment explanation
Indices: 33144956--33145094 Score: 116
Period size: 43 Copynumber: 3.1 Consensus size: 46
33144946 AACTATTTTG
33144956 TATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCT
1 TATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCT
* ** * * *
33145002 TA-TTTA--AAA-GAATTTCTAT-CATTAAGAATATT-AAC-TATT--TT
1 TATTTTATTAAATGAAATAATATGC--CAAG--TGTTCAACATATTGCCT
33145043 GTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCT
1 -TATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCT
33145090 TATTT
1 TATTT
33145095 AAAAGAATTT
Statistics
Matches: 67, Mismatches: 12, Indels: 28
0.63 0.11 0.26
Matches are distributed among these distances:
41 2 0.03
42 9 0.13
43 17 0.25
44 6 0.09
45 17 0.25
46 14 0.21
47 2 0.03
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.42
Consensus pattern (46 bp):
TATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCT
Found at i:33145066 original size:88 final size:88
Alignment explanation
Indices: 33144946--33145154 Score: 418
Period size: 88 Copynumber: 2.4 Consensus size: 88
33144936 CTTTATTCAA
33144946 AACTATTTTGTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCTTATTTAAAA
1 AACTATTTTGTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCTTATTTAAAA
33145011 GAATTTCTATCATTAAGAATATT
66 GAATTTCTATCATTAAGAATATT
33145034 AACTATTTTGTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCTTATTTAAAA
1 AACTATTTTGTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCTTATTTAAAA
33145099 GAATTTCTATCATTAAGAATATT
66 GAATTTCTATCATTAAGAATATT
33145122 AACTATTTTGTATTTTATTAAATGAAATAATAT
1 AACTATTTTGTATTTTATTAAATGAAATAATAT
33145155 CAAAATATTC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 121 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (88 bp):
AACTATTTTGTATTTTATTAAATGAAATAATATGCCAAGTGTTCAACATATTGCCTTATTTAAAA
GAATTTCTATCATTAAGAATATT
Found at i:33145240 original size:49 final size:49
Alignment explanation
Indices: 33145122--33145242 Score: 215
Period size: 49 Copynumber: 2.5 Consensus size: 49
33145112 TAAGAATATT
* *
33145122 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
33145171 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
33145220 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
33145243 TAATATAAAC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:33145678 original size:18 final size:18
Alignment explanation
Indices: 33145652--33145694 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
33145642 GACTAGAAGA
* * *
33145652 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
33145670 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
33145688 AGGATAC
1 AGGATAC
33145695 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:33148619 original size:18 final size:19
Alignment explanation
Indices: 33148596--33148633 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
33148586 TAAAAAATAA
*
33148596 ATAAAT-TTTGGAATTTTT
1 ATAAATATTTGAAATTTTT
*
33148614 ATAAATATTTTAAATTTTT
1 ATAAATATTTGAAATTTTT
33148633 A
1 A
33148634 AATTTTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
ATAAATATTTGAAATTTTT
Found at i:33155941 original size:37 final size:36
Alignment explanation
Indices: 33155888--33155963 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
33155878 ATTCCAGAAA
*
33155888 TAATACTATTTTAATAGT-TTATTATCAAATTTAAT-T
1 TAATACTATCTTAATAGTATT-TTAT-AAATTTAATAT
*
33155924 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATAC-TATCTTAATAGTATTTTATAAATTTAATAT
33155961 TAA
1 TAA
33155964 AGTGATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 14 0.40
37 19 0.54
38 2 0.06
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (36 bp):
TAATACTATCTTAATAGTATTTTATAAATTTAATAT
Found at i:33162270 original size:76 final size:74
Alignment explanation
Indices: 33162186--33162375 Score: 287
Period size: 76 Copynumber: 2.6 Consensus size: 74
33162176 TTTTTAGGGA
* *
33162186 ATTGTAAATAAGGATATATTATTGATGTAAAATACAATAGAATAAAATATAAACATTATTTTTCA
1 ATTGTAAATAAGGATATATTATTGATGTAAAATACAATAGAATAAAATACAAACAATA-TTTT-A
33162251 TTTT-TCTGTAG
64 TTTTGTCT-TAG
* * *
33162262 ATTGTAAATAAGTACATATTATTGATATAAAATACAATAGAATAAAATACAAACAATATTTTATT
1 ATTGTAAATAAGGATATATTATTGATGTAAAATACAATAGAATAAAATACAAACAATATTTTATT
33162327 TTGTCTTAG
66 TTGTCTTAG
33162336 ATTGTAAATAA-G-TATATTATTGATGTAAAATACAATAGAA
1 ATTGTAAATAAGGATATATTATTGATGTAAAATACAATAGAA
33162376 CAAATTTTTT
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
72 26 0.25
74 19 0.18
75 7 0.07
76 53 0.50
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.38
Consensus pattern (74 bp):
ATTGTAAATAAGGATATATTATTGATGTAAAATACAATAGAATAAAATACAAACAATATTTTATT
TTGTCTTAG
Found at i:33166953 original size:28 final size:28
Alignment explanation
Indices: 33166908--33167000 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
33166898 TACCTAATAT
*
33166908 TGCTTACAAATTGCGCTCCAATTGCCAA
1 TGCTCACAAATTGCGCTCCAATTGCCAA
*
33166936 TGGTCACAAATTGCGCTCCAATTGCCAA
1 TGCTCACAAATTGCGCTCCAATTGCCAA
* *
33166964 TGCTCGCAAATTGCGCTCCAACTGCCAA
1 TGCTCACAAATTGCGCTCCAATTGCCAA
*
33166992 TGCCCACAA
1 TGCTCACAA
33167001 CCCCGTAACG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (28 bp):
TGCTCACAAATTGCGCTCCAATTGCCAA
Found at i:33168999 original size:25 final size:27
Alignment explanation
Indices: 33168971--33169026 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
33168961 AGTACTTATC
* *
33168971 TTAATAGT-ATTTTATTAAT-TTAATT
1 TTAATAGTGATTATATTAATATTAAAT
33168996 TTAA-AGTGATTATATTAATATTAAAT
1 TTAATAGTGATTATATTAATATTAAAT
33169022 TTAAT
1 TTAAT
33169027 CTAATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (27 bp):
TTAATAGTGATTATATTAATATTAAAT
Found at i:33169017 original size:68 final size:69
Alignment explanation
Indices: 33168942--33169073 Score: 212
Period size: 68 Copynumber: 1.9 Consensus size: 69
33168932 TTTAATAGAT
* * * *
33168942 TTAATATTAAATTTAATTTAGTACTTATCTTAAT-AGTATTTTATTAATTTAATTTTAAAGTGAT
1 TTAATATTAAATTTAATCTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGAT
33169006 TATA
66 TATA
*
33169010 TTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGA
1 TTAATATTAAATTTAATCTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGA
33169074 CTAAAATTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
68 31 0.53
69 27 0.47
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAATACTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTGAT
TATA
Found at i:33181252 original size:3 final size:3
Alignment explanation
Indices: 33181244--33181272 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
33181234 TGTTTGAGTT
33181244 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
33181273 GTTGTTGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33181291 original size:3 final size:3
Alignment explanation
Indices: 33181285--33181322 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
33181275 TGTTGTTGTA
33181285 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT
33181323 TAATCATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
GTG
Found at i:33192318 original size:10 final size:10
Alignment explanation
Indices: 33192303--33192341 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
33192293 ACTATCATAA
*
33192303 AATGTGAATG
1 AATGTGATTG
33192313 AATGTGATTG
1 AATGTGATTG
*
33192323 AATGTGATTA
1 AATGTGATTG
33192333 AATGTGATT
1 AATGTGATT
33192342 TATATGTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (10 bp):
AATGTGATTG
Found at i:33206135 original size:40 final size:40
Alignment explanation
Indices: 33205896--33206121 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
33205886 TTGAATGATG
* * * * *
33205896 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
33205936 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33205976 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33206016 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33206056 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33206097 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
33206122 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33214044 original size:79 final size:81
Alignment explanation
Indices: 33213908--33214092 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
33213898 TTGAATGATG
* *
33213908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
33213972 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33213987 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33214049 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
33214067 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33214093 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:33214106 original size:40 final size:40
Alignment explanation
Indices: 33213909--33214092 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
33213899 TGAATGATGT
* * * *
33213909 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33213949 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33213989 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
33214027 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33214068 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33214093 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33214114 original size:79 final size:79
Alignment explanation
Indices: 33213961--33214125 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
33213951 GGACTAAGAT
* * **
33213961 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33214026 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33214040 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33214103 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33214119 CCGAAGG
1 CCGAAGG
33214126 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33217327 original size:17 final size:17
Alignment explanation
Indices: 33217305--33217337 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33217295 CACTAGCATT
*
33217305 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
33217322 AAAATGCAACGACAAT
1 AAAATGCAACGACAAT
33217338 GTGCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:33217769 original size:15 final size:15
Alignment explanation
Indices: 33217724--33217762 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
33217714 ATTGACAATG
33217724 TTCTCAGTAGATTCT
1 TTCTCAGTAGATTCT
* *
33217739 TTCTCAGCAGCTTCT
1 TTCTCAGTAGATTCT
33217754 TTCTCAGTA
1 TTCTCAGTA
33217763 TTTTCTTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (15 bp):
TTCTCAGTAGATTCT
Found at i:33226349 original size:11 final size:11
Alignment explanation
Indices: 33226333--33226368 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
33226323 TCATTGTCTT
33226333 AAAGAAATTTA
1 AAAGAAATTTA
33226344 AAAGAAATTT-
1 AAAGAAATTTA
33226354 AAAGAAATTTA
1 AAAGAAATTTA
33226365 AAAG
1 AAAG
33226369 GGTAATCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (11 bp):
AAAGAAATTTA
Found at i:33226357 original size:10 final size:10
Alignment explanation
Indices: 33226331--33226366 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
33226321 TTTCATTGTC
33226331 TTAAAGAAAT
1 TTAAAGAAAT
33226341 TTAAAAGAAAT
1 TT-AAAGAAAT
33226352 TTAAAGAAAT
1 TTAAAGAAAT
33226362 TTAAA
1 TTAAA
33226367 AGGGTAATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (10 bp):
TTAAAGAAAT
Found at i:33227550 original size:27 final size:26
Alignment explanation
Indices: 33227512--33227562 Score: 93
Period size: 27 Copynumber: 1.9 Consensus size: 26
33227502 ACAGAAGCCC
33227512 AACTCAATTACACGGTAACTGAAAAAG
1 AACTCAATTACACGGTAAC-GAAAAAG
33227539 AACTCAATTACACGGTAACGAAAA
1 AACTCAATTACACGGTAACGAAAA
33227563 CCACTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.18
Consensus pattern (26 bp):
AACTCAATTACACGGTAACGAAAAAG
Found at i:33229755 original size:17 final size:17
Alignment explanation
Indices: 33229729--33229790 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
33229719 TTCTCGTTGA
*
33229729 AGCAGCCCTATCGCCAG
1 AGCAACCCTATCGCCAG
* * * *
33229746 AGCAAACCTATTGTCGG
1 AGCAACCCTATCGCCAG
*
33229763 AGCAACCCTATCGCCAA
1 AGCAACCCTATCGCCAG
33229780 AGCAACCCTAT
1 AGCAACCCTAT
33229791 TACTAAAAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (17 bp):
AGCAACCCTATCGCCAG
Found at i:33232059 original size:42 final size:43
Alignment explanation
Indices: 33232013--33232098 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
33232003 AGGGTAAATC
* *
33232013 CAACAACCCTAGTTTATCTTCTAAT-TTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTAATCTTTTTAAATTCTTTTTT
* **
33232055 CAACAACCCAAGATTATCTTTTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTAATCTTTTTAAATTCTTTTTT
33232098 C
1 C
33232099 TATGGTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 20 0.53
43 18 0.47
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.50
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTAATCTTTTTAAATTCTTTTTT
Found at i:33235837 original size:85 final size:86
Alignment explanation
Indices: 33235738--33235903 Score: 237
Period size: 85 Copynumber: 1.9 Consensus size: 86
33235728 GAGAAAATTC
* * *
33235738 TGATGCGACCTGCTCTACTGCAACTTCTGAGAGATAAGGTTTATCAG-TTT-AATCCACTCCACT
1 TGATGCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTAT-AGTTTTAAATCCACTCCACT
*
33235801 GCAACTTTAGGGAGATAAGACT
65 GCAACTTCAGGGAGATAAGACT
* * * *
33235823 TGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCTACTCCACTG
1 TGATGCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAGTTTTAAATCCACTCCACTG
33235888 CAACTTCAGGGAGATA
66 CAACTTCAGGGAGATA
33235904 GGATTGACTT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
84 1 0.01
85 42 0.59
86 28 0.39
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (86 bp):
TGATGCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAGTTTTAAATCCACTCCACTG
CAACTTCAGGGAGATAAGACT
Found at i:33235857 original size:41 final size:41
Alignment explanation
Indices: 33235794--33235991 Score: 184
Period size: 41 Copynumber: 4.7 Consensus size: 41
33235784 GTTTAATCCA
*
33235794 CTCCACTGCAACTTTAGGGAGATAAGACTTGATGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTG
* * * *** *
33235835 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-T-G-ATGCGATCTG
* *
33235880 CTCCACTGCAACTTCAGGGAGATAGGATTGACTT-TTTCTG-TCTG
1 CTCCACTGCAACTTCAGGGAGATA--A--GACTTGATGC-GATCTG
*
33235924 CTCCACTGTAACTTCAGGGAGATAAGACTTGATGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTG
* *
33235965 CTCTACTGCAACTTCAGAGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
33235992 TCTGTGGTTT
Statistics
Matches: 127, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
40 6 0.05
41 54 0.43
42 3 0.02
43 1 0.01
44 30 0.24
45 27 0.21
47 2 0.02
48 2 0.02
49 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (41 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTG
Found at i:33235892 original size:45 final size:45
Alignment explanation
Indices: 33235830--33236033 Score: 202
Period size: 45 Copynumber: 4.6 Consensus size: 45
33235820 ACTTGATGCG
* *
33235830 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAA
* * *** **
33235875 ATCTACTCCACTGCAACTTCAGGGAGATAGGAT-TGACTTTTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAA
* * * ***
33235919 GTCTGCTCCACTGTAACTTCAGGGAGATAAGA-CT-T-G-ATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAA
* *
33235960 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAA
**
33236005 ATCCACTCCACTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
33236034 GGATTGACTT
Statistics
Matches: 124, Mismatches: 30, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
41 30 0.24
42 2 0.02
43 1 0.01
44 36 0.29
45 55 0.44
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAA
Found at i:33235928 original size:130 final size:130
Alignment explanation
Indices: 33235794--33236047 Score: 481
Period size: 130 Copynumber: 2.0 Consensus size: 130
33235784 GTTTAATCCA
*
33235794 CTCCACTGCAACTTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
*
33235859 AGATCTGTGGTTTTAAATCTACTCCACTGCAACTTCAGGGAGATAGGATTGACTTTTTCTGTCTG
66 AGATCTGTGGTTTTAAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGACTTTTTCTGTCTG
*
33235924 CTCCACTGTAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
33235989 AGATCTGTGGTTTTAAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGACTTTTTC
66 AGATCTGTGGTTTTAAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGACTTTTTC
33236048 AATCTGTTCT
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 121 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (130 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGACTTTTTCTGTCTG
Found at i:33236335 original size:24 final size:24
Alignment explanation
Indices: 33236303--33236358 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
33236293 CGGATTGCCC
*
33236303 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCCTCAAGGTTCAAT
33236327 CCACTGTAATCCTCAAGGTTCAAT
1 CCACTGTAATCCTCAAGGTTCAAT
*
33236351 CTACTGTA
1 CCACTGTA
33236359 GCCCTTGGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (24 bp):
CCACTGTAATCCTCAAGGTTCAAT
Found at i:33236679 original size:384 final size:383
Alignment explanation
Indices: 33236038--33236819 Score: 1408
Period size: 384 Copynumber: 2.0 Consensus size: 383
33236028 GAGATAGGAT
33236038 TGACT-TTT-TCAATCTGTTCTCTAGGGAACATGACCTGTAATATTTTTACATGGCCTATTTATG
1 TGACTCTTTCTCAATCTGTTCTCTAGGGAACATGACCTGTAATATTTTTACATGGCCTATTTATG
*
33236101 TCTAGTGATTAGGATGATATGATCGAAATGAAACAACATCTCCTAACCAAATGTGCATGCATGAA
66 TCTAGTGACTAGGATGATATGATCGAAATGAAACAACATCTCCTAACCAAATGTGCATGCATGAA
* *
33236166 TGCAAAATGTGATGAAAATGATATCTTAATGTTTGAGTTGTTATTGCCCGTTGTTCATTAAGGCC
131 TGCAAAATGTCATGAAAATGATATCTTAATGTTTGAATTGTTATTGCCCGTTGTTCATTAAGGCC
* *
33236231 TCATTACCAACACGTCAAAATGTTATCTTTATTTTCCTGGTAACACCTATATCTTACATAATCGG
196 TCATTACCAACACGTCAAAACGTTATCTTTATTTTCCTGGTAACACCCATATCTTACATAATCGG
33236296 ATTGCCCCCACTGTAATCTTCAAGGTTCAATCCACTGTAATCCTCAAGGTTCAATCTACTGTAGC
261 ATTGCCCCCACTGTAATCTTCAAGGTTCAATCCACTGTAATCCTCAAGGTTCAATCTACTGTAGC
33236361 CCTTGGGACATAAAATTTGAATTATCTTCTTCCTACTGTAATTTAGGAGTATAAGATC
326 CCTTGGGACATAAAATTTGAATTATCTTCTTCCTACTGTAATTTAGGAGTATAAGATC
* * *
33236419 TGGCTCTTTCTCAATCTGTTCTCTGGGGAACATGACTTGTAATATTTTTACATGGCCTATTTATG
1 TGACTCTTTCTCAATCTGTTCTCTAGGGAACATGACCTGTAATATTTTTACATGGCCTATTTATG
* *
33236484 TCTAGTGACTAGGATGTTATGATCGAAATGAATCAACATCTCCTAACCAAATGTGCATGCATGAA
66 TCTAGTGACTAGGATGATATGATCGAAATGAAACAACATCTCCTAACCAAATGTGCATGCATGAA
33236549 TGCAAAAATGTCATGAAAATGATATCTTAATGTTTGAATTGTTATTGCCCGTTGTTCATTAAGGC
131 TGC-AAAATGTCATGAAAATGATATCTTAATGTTTGAATTGTTATTGCCCGTTGTTCATTAAGGC
*
33236614 CTCATTACCAACACGTCAAAACGTTATCTTTATTTGT-CTGGTAACACCCATATCTTACTTAATC
195 CTCATTACCAACACGTCAAAACGTTATCTTTATTT-TCCTGGTAACACCCATATCTTACATAATC
* *
33236678 GGATTGCCCCTACTGTAATCTTCAAGGTTCAATCTACTGTAATCCTCAAGGTTCAATCTACTGTA
259 GGATTGCCCCCACTGTAATCTTCAAGGTTCAATCCACTGTAATCCTCAAGGTTCAATCTACTGTA
33236743 GCCCTTGGGACATAAAATTTGAATTATCTTCTTCCTACTGTAATTTAGGAGTATAAGATC
324 GCCCTTGGGACATAAAATTTGAATTATCTTCTTCCTACTGTAATTTAGGAGTATAAGATC
33236803 TGACTCTTTCTCAATCT
1 TGACTCTTTCTCAATCT
33236820 TCTCCTACCG
Statistics
Matches: 383, Mismatches: 14, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
381 4 0.01
382 3 0.01
383 118 0.31
384 257 0.67
385 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (383 bp):
TGACTCTTTCTCAATCTGTTCTCTAGGGAACATGACCTGTAATATTTTTACATGGCCTATTTATG
TCTAGTGACTAGGATGATATGATCGAAATGAAACAACATCTCCTAACCAAATGTGCATGCATGAA
TGCAAAATGTCATGAAAATGATATCTTAATGTTTGAATTGTTATTGCCCGTTGTTCATTAAGGCC
TCATTACCAACACGTCAAAACGTTATCTTTATTTTCCTGGTAACACCCATATCTTACATAATCGG
ATTGCCCCCACTGTAATCTTCAAGGTTCAATCCACTGTAATCCTCAAGGTTCAATCTACTGTAGC
CCTTGGGACATAAAATTTGAATTATCTTCTTCCTACTGTAATTTAGGAGTATAAGATC
Found at i:33236719 original size:24 final size:24
Alignment explanation
Indices: 33236687--33236742 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
33236677 CGGATTGCCC
*
33236687 CTACTGTAATCTTCAAGGTTCAAT
1 CTACTGTAATCCTCAAGGTTCAAT
33236711 CTACTGTAATCCTCAAGGTTCAAT
1 CTACTGTAATCCTCAAGGTTCAAT
33236735 CTACTGTA
1 CTACTGTA
33236743 GCCCTTGGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (24 bp):
CTACTGTAATCCTCAAGGTTCAAT
Found at i:33265061 original size:13 final size:13
Alignment explanation
Indices: 33265043--33265072 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33265033 TTTTACCTTT
*
33265043 TTAATTTTCTTAG
1 TTAATTTACTTAG
33265056 TTAATTTACTTAG
1 TTAATTTACTTAG
33265069 TTAA
1 TTAA
33265073 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:33270435 original size:18 final size:18
Alignment explanation
Indices: 33270412--33270447 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33270402 TTATATTAAT
*
33270412 TTTAATTAATTTGATCAA
1 TTTAATTAACTTGATCAA
*
33270430 TTTAATTTACTTGATCAA
1 TTTAATTAACTTGATCAA
33270448 AATAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (18 bp):
TTTAATTAACTTGATCAA
Found at i:33272660 original size:25 final size:27
Alignment explanation
Indices: 33272596--33272669 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
33272586 ATATTTTCTC
* *
33272596 AAAATTTTAAC-AGGGGCAAAATCGTCA
1 AAAATTTT-ACTAGGGGTAAAATCATCA
33272623 AAAATTTTACTA-GGGTAAAATCATC-
1 AAAATTTTACTAGGGGTAAAATCATCA
*
33272648 AAAATTTTGCTAGGGGTAAAAT
1 AAAATTTTACTAGGGGTAAAAT
33272670 AGGGATGAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.26
26 22 0.52
27 9 0.21
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.28
Consensus pattern (27 bp):
AAAATTTTACTAGGGGTAAAATCATCA
Found at i:33275083 original size:24 final size:22
Alignment explanation
Indices: 33275040--33275083 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
33275030 CGACGTGTTC
* *
33275040 CCTATTAAATCGAGTTTATTCT
1 CCTATTAAATCGACTATATTCT
33275062 CCTAGTTAAACTCGACTATATT
1 CCTA-TTAAA-TCGACTATATT
33275084 TTTCTAGTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 5 0.28
24 9 0.50
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (22 bp):
CCTATTAAATCGACTATATTCT
Found at i:33279606 original size:17 final size:17
Alignment explanation
Indices: 33279571--33279606 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
33279561 TGAAAATTGA
**
33279571 ACATACCCATGTTGGAC
1 ACATACCCATGTTCAAC
33279588 ACATACCCATGTTCAAC
1 ACATACCCATGTTCAAC
33279605 AC
1 AC
33279607 TTGCATCCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.22
Consensus pattern (17 bp):
ACATACCCATGTTCAAC
Found at i:33281989 original size:57 final size:57
Alignment explanation
Indices: 33281896--33282007 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
33281886 ACACACTTCA
* * *
33281896 ATTCTTTTGAATGTAGGTTATGATGGCCTTCACTGAGGTTCTTTGGGAACAATTTCT
1 ATTCTTTTGAATGTAGGTTATGATAGCCTTCACTGAGATTCTGTGGGAACAATTTCT
* **
33281953 ATTCTTTTGAATGTAGGTTGTGATAGCCTTGGCTGAGATTCTGTGGGAACAATTT
1 ATTCTTTTGAATGTAGGTTATGATAGCCTTCACTGAGATTCTGTGGGAACAATTT
33282008 AAATAAAACG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.41
Consensus pattern (57 bp):
ATTCTTTTGAATGTAGGTTATGATAGCCTTCACTGAGATTCTGTGGGAACAATTTCT
Found at i:33282660 original size:19 final size:19
Alignment explanation
Indices: 33282636--33282706 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
33282626 TATTTTATAA
33282636 TAAATATTATGTAATTACT
1 TAAATATTATGTAATTACT
33282655 TAAATATTTAGTAGGTCAAAATGTA--
1 TAAATA-TTA-T--GT---AAT-TACT
33282680 TAAATATTATGTAATTACT
1 TAAATATTATGTAATTACT
33282699 TAAATATT
1 TAAATATT
33282707 TAGTAGGTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 20
0.68 0.00 0.32
Matches are distributed among these distances:
17 2 0.05
18 3 0.07
19 14 0.33
20 3 0.07
21 3 0.07
23 3 0.07
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (19 bp):
TAAATATTATGTAATTACT
Found at i:33282685 original size:44 final size:44
Alignment explanation
Indices: 33282635--33282734 Score: 182
Period size: 44 Copynumber: 2.2 Consensus size: 44
33282625 ATATTTTATA
33282635 ATAAATATTATGTAATTACTTAAATATTTAGTAGGTCAAAATGT
1 ATAAATATTATGTAATTACTTAAATATTTAGTAGGTCAAAATGT
33282679 ATAAATATTATGTAATTACTTAAATATTTAGTAGGTCAAAATGT
1 ATAAATATTATGTAATTACTTAAATATTTAGTAGGTCAAAATGT
*
33282723 ATATAAAATTAT
1 ATA-AATATTAT
33282735 CTCTCATCAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 47 0.87
45 7 0.13
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (44 bp):
ATAAATATTATGTAATTACTTAAATATTTAGTAGGTCAAAATGT
Found at i:33285600 original size:36 final size:37
Alignment explanation
Indices: 33285560--33285658 Score: 116
Period size: 36 Copynumber: 2.7 Consensus size: 37
33285550 CTAACAATTG
* *
33285560 AAATCCTAGA-CCTTCAAACAATAAACACTGGACCTT-
1 AAATCCTAAATCCTTCAAAC-ATAAACACTAGACCTTA
* *
33285596 AAATCCTAAATCC-TAAAATCTTAAACACTAGACCTTA
1 AAATCCTAAATCCTTCAAA-CATAAACACTAGACCTTA
33285633 AAATCCTAAATCCTTCAAAC-TAAACA
1 AAATCCTAAATCCTTCAAACATAAACA
33285659 TTAAACTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
36 33 0.61
37 17 0.31
38 4 0.07
ACGTcount: A:0.45, C:0.26, G:0.04, T:0.24
Consensus pattern (37 bp):
AAATCCTAAATCCTTCAAACATAAACACTAGACCTTA
Found at i:33285618 original size:22 final size:22
Alignment explanation
Indices: 33285593--33285646 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
33285583 AACACTGGAC
33285593 CTTAAATCCTAAATCC-TAAAAT
1 CTTAAATCCTAAA-CCTTAAAAT
*
33285615 CTTAAA-CACTAGACCTTAAAAT
1 CTTAAATC-CTAAACCTTAAAAT
*
33285637 CCTAAATCCT
1 CTTAAATCCT
33285647 TCAAACTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 23 0.85
23 1 0.04
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (22 bp):
CTTAAATCCTAAACCTTAAAAT
Found at i:33285654 original size:29 final size:30
Alignment explanation
Indices: 33285603--33285663 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
33285593 CTTAAATCCT
* *
33285603 AAATCCTAAAATCTTAAACACTAGACCTTA
1 AAATCCTAAAATCTTAAACACTAAACATTA
*
33285633 AAATCCT-AAATCCTTCAA-ACTAAACATTA
1 AAATCCTAAAAT-CTTAAACACTAAACATTA
33285662 AA
1 AA
33285664 CTTAATTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (30 bp):
AAATCCTAAAATCTTAAACACTAAACATTA
Found at i:33286488 original size:22 final size:23
Alignment explanation
Indices: 33286458--33286503 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
33286448 TTTTCAAAAT
*
33286458 ACTAAACCTTAAAA-TCTTAAAC
1 ACTAAACCTTAAAACCCTTAAAC
*
33286480 ACTAGACCTTAAAACCCTTAAAC
1 ACTAAACCTTAAAACCCTTAAAC
33286503 A
1 A
33286504 TTCCAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (23 bp):
ACTAAACCTTAAAACCCTTAAAC
Found at i:33288595 original size:40 final size:40
Alignment explanation
Indices: 33288549--33288628 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
33288539 TTTCAAAAGA
* *
33288549 AAGTTTTCGATAAAACCTTGCTTTCAAGTTCTGAGACTTT
1 AAGTTTTCGACAAAACCTTGCTTTCAAGTTCTAAGACTTT
* * *
33288589 AAGTTTTTGACAAAACCTTGTTTTTAAGTTCTAAGACTTT
1 AAGTTTTCGACAAAACCTTGCTTTCAAGTTCTAAGACTTT
33288629 GTTTTCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (40 bp):
AAGTTTTCGACAAAACCTTGCTTTCAAGTTCTAAGACTTT
Found at i:33299791 original size:50 final size:50
Alignment explanation
Indices: 33299642--33299882 Score: 252
Period size: 50 Copynumber: 4.8 Consensus size: 50
33299632 GATAATAGCA
* * ** * * *
33299642 TGCCAAAGCCATGTCCCAGACATGGTCTTATATGGGATGTTTCCTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
** * * * * ** * *
33299691 TGCCAATATCATATCCTAGATATGGTCTTACATGAGAGTTCCCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* **
33299741 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
33299791 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
33299841 TGCCAATGCCATGTCCGAAACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33299883 TTACCCAAAT
Statistics
Matches: 157, Mismatches: 33, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 33 0.21
50 123 0.78
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:33301406 original size:25 final size:25
Alignment explanation
Indices: 33301372--33301439 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
33301362 ACATACCACG
* *
33301372 GCTCGTATGAGCTTTCCGATTTACA
1 GCTCGTATGAGCTTCCCAATTTACA
*
33301397 GCTCGTATGATCTTCCCAATTTACA
1 GCTCGTATGAGCTTCCCAATTTACA
33301422 GCTCGTATGAGCTTCCCA
1 GCTCGTATGAGCTTCCCA
33301440 GTTCATAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.34
Consensus pattern (25 bp):
GCTCGTATGAGCTTCCCAATTTACA
Found at i:33308403 original size:37 final size:38
Alignment explanation
Indices: 33308340--33308417 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
33308330 CTGGAAGTAC
* *
33308340 GCTCAATCGAGCCAAATTTTACCGTTATACTAAATGAA
1 GCTCAATCGAGCCAAATTATACCGTTATACTAAATAAA
* * *
33308378 GCTCAATTGAG-CAAATTATATCGTTATACTGAATAAA
1 GCTCAATCGAGCCAAATTATACCGTTATACTAAATAAA
33308415 GCT
1 GCT
33308418 TAACTAAGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
37 25 0.71
38 10 0.29
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (38 bp):
GCTCAATCGAGCCAAATTATACCGTTATACTAAATAAA
Found at i:33308428 original size:37 final size:37
Alignment explanation
Indices: 33308352--33308430 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
33308342 TCAATCGAGC
* * * *
33308352 CAAATTTTACCGTTATACTAAATGAAGCTCAATTGAG
1 CAAATTATACCGTTATACTAAATAAAGCTCAACTAAG
* * *
33308389 CAAATTATATCGTTATACTGAATAAAGCTTAACTAAG
1 CAAATTATACCGTTATACTAAATAAAGCTCAACTAAG
33308426 CAAAT
1 CAAAT
33308431 CTTACCATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (37 bp):
CAAATTATACCGTTATACTAAATAAAGCTCAACTAAG
Found at i:33308483 original size:37 final size:38
Alignment explanation
Indices: 33308442--33308525 Score: 93
Period size: 37 Copynumber: 2.3 Consensus size: 38
33308432 TTACCATTAA
* * * *
33308442 ACTGAATGATGATTAATCGAG-A-AAATTCTACGGTTAT
1 ACTGAATGAAGATCAAACGAGTAGAAA-TCTACGCTTAT
*
33308479 ACTGAGTGAAGATCAAACGAGTAGAAATCTACGCTTAT
1 ACTGAATGAAGATCAAACGAGTAGAAATCTACGCTTAT
33308517 ACTG-ATGAA
1 ACTGAATGAA
33308526 AAGCTCAATC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 21 0.54
38 15 0.38
39 3 0.08
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.27
Consensus pattern (38 bp):
ACTGAATGAAGATCAAACGAGTAGAAATCTACGCTTAT
Found at i:33310288 original size:12 final size:12
Alignment explanation
Indices: 33310251--33310288 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33310241 ATTTAACGTA
33310251 TAAACTTATAAT
1 TAAACTTATAAT
*
33310263 TAAACATCAT-AT
1 TAAAC-TTATAAT
33310275 TAAACTTATAAT
1 TAAACTTATAAT
33310287 TA
1 TA
33310289 TTCTAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (12 bp):
TAAACTTATAAT
Found at i:33314862 original size:20 final size:20
Alignment explanation
Indices: 33314839--33314879 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
33314829 AGATACATAC
33314839 TTAAACAGTATAGACAGACA
1 TTAAACAGTATAGACAGACA
33314859 TTAAACAGTATAGACAGACA
1 TTAAACAGTATAGACAGACA
33314879 T
1 T
33314880 ACGTATTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.22
Consensus pattern (20 bp):
TTAAACAGTATAGACAGACA
Found at i:33318305 original size:15 final size:15
Alignment explanation
Indices: 33318278--33318312 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
33318268 TTCATTAGGC
33318278 TTTTATCCTATAAGG
1 TTTTATCCTATAAGG
33318293 TTTT-TCCTAATAAGG
1 TTTTATCCT-ATAAGG
33318308 TTTTA
1 TTTTA
33318313 ATGAGGCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.51
Consensus pattern (15 bp):
TTTTATCCTATAAGG
Found at i:33319411 original size:12 final size:13
Alignment explanation
Indices: 33319394--33319425 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
33319384 ATAGAAAAGA
33319394 AGAAGAAGAA-GG
1 AGAAGAAGAATGG
33319406 AGAAGAAGAATGG
1 AGAAGAAGAATGG
33319419 A-AAGAAG
1 AGAAGAAG
33319426 GGTTGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 16 0.84
13 3 0.16
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (13 bp):
AGAAGAAGAATGG
Found at i:33331239 original size:19 final size:19
Alignment explanation
Indices: 33331213--33331260 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
33331203 TTATATATTT
33331213 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
33331231 TAAATTTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
33331250 TAAATTTTATT
1 TAAATTTTATT
33331261 CATATTCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 4 0.14
19 25 0.86
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:33331333 original size:41 final size:44
Alignment explanation
Indices: 33331282--33331370 Score: 139
Period size: 41 Copynumber: 2.1 Consensus size: 44
33331272 AATGTTTTAT
*
33331282 TTTATCTTTTAGTAGTTTATTAGAATAA-GAAATTA-TTTACC-
1 TTTATCTTTTAGTAATTTATTAGAATAAGGAAATTATTTTACCA
*
33331323 TTTATGTTTTAGTAATTTATTAGAATAAGGAAATTATTTTACCA
1 TTTATCTTTTAGTAATTTATTAGAATAAGGAAATTATTTTACCA
33331367 TTTA
1 TTTA
33331371 GGATTAGAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 26 0.60
42 7 0.16
43 6 0.14
44 4 0.09
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (44 bp):
TTTATCTTTTAGTAATTTATTAGAATAAGGAAATTATTTTACCA
Found at i:33335956 original size:19 final size:19
Alignment explanation
Indices: 33335910--33335957 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
33335900 GTATATATTT
*
33335910 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAGA
*
33335928 TAAATCTTATTTAAGTAGA
1 TAAATTTTATTTAAGTAGA
*
33335947 TAAGTTTTATT
1 TAAATTTTATT
33335958 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAGA
Found at i:33345726 original size:15 final size:15
Alignment explanation
Indices: 33345703--33345733 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33345693 AAAACAACAT
*
33345703 AACTTTTGACCTTTC
1 AACTCTTGACCTTTC
33345718 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33345733 A
1 A
33345734 CTTACATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:33350002 original size:15 final size:15
Alignment explanation
Indices: 33349982--33350012 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33349972 AAAACAACAT
33349982 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33349997 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33350012 A
1 A
33350013 CTTACATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:33355621 original size:39 final size:38
Alignment explanation
Indices: 33355578--33355707 Score: 181
Period size: 39 Copynumber: 3.3 Consensus size: 38
33355568 ACGTTTAAAT
*
33355578 ATATATCAC-ATCACACATATAATCACATAACATTTAAGC
1 ATATATCACAAT-A-ACATATAATCACATAACATTCAAGC
* * *
33355617 ATATATCACAATAAACTTATAATCATATAACATTCAAGT
1 ATATATCACAAT-AACATATAATCACATAACATTCAAGC
33355656 ATATATCACAATAATCATATAATCACATAACATTCAAGC
1 ATATATCACAATAA-CATATAATCACATAACATTCAAGC
33355695 ATATATCACAATA
1 ATATATCACAATA
33355708 CTCAAAAACA
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.02
39 76 0.94
40 3 0.04
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.30
Consensus pattern (38 bp):
ATATATCACAATAACATATAATCACATAACATTCAAGC
Found at i:33355669 original size:23 final size:23
Alignment explanation
Indices: 33355643--33355707 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 23
33355633 TTATAATCAT
33355643 ATAACATTCAAGTATATATCACA
1 ATAACATTCAAGTATATATCACA
33355666 AT-A-A-TC-A-TATA-ATCAC-
1 ATAACATTCAAGTATATATCACA
*
33355682 ATAACATTCAAGCATATATCACA
1 ATAACATTCAAGTATATATCACA
33355705 ATA
1 ATA
33355708 CTCAAAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
16 2 0.06
17 6 0.18
18 5 0.15
19 3 0.09
20 3 0.09
21 4 0.12
22 6 0.18
23 5 0.15
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.29
Consensus pattern (23 bp):
ATAACATTCAAGTATATATCACA
Found at i:33363117 original size:22 final size:22
Alignment explanation
Indices: 33363092--33363140 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
33363082 ACTTATTGCC
*
33363092 ATTGACGT-ATTATGCTAATATA
1 ATTGA-GTGATTATGCCAATATA
* *
33363114 ATTGATTGATTGTGCCAATATA
1 ATTGAGTGATTATGCCAATATA
33363136 ATTGA
1 ATTGA
33363141 AGGTTTATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (22 bp):
ATTGAGTGATTATGCCAATATA
Found at i:33370488 original size:7 final size:7
Alignment explanation
Indices: 33370478--33370510 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
33370468 ACTAATATGT
33370478 AATACTA
1 AATACTA
33370485 AATACTA
1 AATACTA
33370492 AATACTA
1 AATACTA
33370499 AATACTA
1 AATACTA
33370506 AATAC
1 AATAC
33370511 CTAATATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:33370523 original size:21 final size:20
Alignment explanation
Indices: 33370467--33370523 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
33370457 ACACTTATTT
33370467 TACTAATATGTAATACTAAA
1 TACTAATATGTAATACTAAA
*
33370487 TACTAAATACT-AAATACTAAA
1 TACT-AATA-TGTAATACTAAA
33370508 TACCTAATATGTAATA
1 TA-CTAATATGTAATA
33370524 ATTAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 5 0.16
21 23 0.74
22 3 0.10
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (20 bp):
TACTAATATGTAATACTAAA
Found at i:33373888 original size:68 final size:67
Alignment explanation
Indices: 33373737--33373934 Score: 200
Period size: 68 Copynumber: 2.9 Consensus size: 67
33373727 ACGTCCTGTG
* * * * * **
33373737 GACTCCATATTTTGCCATAGCTGAGCTGTTATCTTACATAACATGATCTTGTGTTTAATGTCCTA
1 GACTCCATATTTT-CCATAGCCGAGCTATGATCTTACACAATATGATCTCATGTTTAATGTCCTA
33373802 GCA
65 GCA
** *
33373805 GACTCTTTATGTTTCCATAGCCGAGCTATGGTCTTACACAATATGATCTCATGTTTAATGTCCTA
1 GACTCCATAT-TTTCCATAGCCGAGCTATGATCTTACACAATATGATCTCATGTTTAATGTCCTA
33373870 G-A
65 GCA
** * * * * *
33373872 GAACTCCATATATTTCCACGGTCGAGCGATGATCTGACACAATATGGTCCCATGTTTAATGTC
1 G-ACTCCATAT-TTTCCATAGCCGAGCTATGATCTTACACAATATGATCTCATGTTTAATGTC
33373935 TTGGCGGACT
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
67 2 0.02
68 102 0.95
69 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (67 bp):
GACTCCATATTTTCCATAGCCGAGCTATGATCTTACACAATATGATCTCATGTTTAATGTCCTAG
CA
Found at i:33378985 original size:24 final size:24
Alignment explanation
Indices: 33378937--33378983 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
33378927 ACTGGTCATA
*
33378937 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
33378961 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
33378984 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:33379586 original size:27 final size:27
Alignment explanation
Indices: 33379561--33379879 Score: 279
Period size: 27 Copynumber: 12.0 Consensus size: 27
33379551 CTGTATGATT
* * *
33379561 GAAATACCCCCATAGAGTAGAATGATC
1 GAAATACCCCCATAGGGTAAAATGACC
*
33379588 GAAATACACCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* * * *
33379615 GAAATACCTCAATAGGGTGAAATGATC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
33379642 GAAATA-CCCCATAGGATAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACC
** *
33379668 GAAATACCCTGATA-GGT-AAATGACT
1 GAAATACCCCCATAGGGTAAAATGACC
* * *
33379693 AAAATACCCCTATAGGGTAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGACC
* * *
33379720 GAAATACCCTCACAGAGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* * *
33379747 GAAATA-CCCTATAGGGTAGAATAACC
1 GAAATACCCCCATAGGGTAAAATGACC
* * * * *
33379773 AAAATACCCTCATAGGGTAGACTGATC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
33379800 GAAATACCCTCATAGGATAAAATGA-C
1 GAAATACCCCCATAGGGTAAAATGACC
* * *
33379826 TAAGATACCCCCATAGGGAAAAATAACC
1 GAA-ATACCCCCATAGGGTAAAATGACC
* * *
33379854 AAAATACCCTCATAAGGTAAAATGAC
1 GAAATACCCCCATAGGGTAAAATGAC
33379880 TGTTATACCC
Statistics
Matches: 231, Mismatches: 55, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
25 19 0.08
26 47 0.20
27 162 0.70
28 3 0.01
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACC
Found at i:33379778 original size:105 final size:105
Alignment explanation
Indices: 33379562--33379788 Score: 262
Period size: 105 Copynumber: 2.1 Consensus size: 105
33379552 TGTATGATTG
* *
33379562 AAATACCCCCATAGAGTAGAATGA-TCGAAATACACCCATAGGGTAAAATGACCGAAATACCTCA
1 AAATACCCTCATAG-GTA-AATGACT-AAAATACACCCATAGGGTAAAATGACCGAAATACCTCA
* * * * * **
33379626 ATAGGGTGAAATGATCGAAATACCCCATAGGATAAAATGACTG
63 ACAGAGTAAAATGACCGAAATACCCCATAGGATAAAATAACCA
* *
33379669 AAATACCCTGATAGGTAAATGACTAAAATAC-CCCTATAGGGTAAAATGATCGAAATACCCTC-A
1 AAATACCCTCATAGGTAAATGACTAAAATACACCC-ATAGGGTAAAATGACCGAAATA-CCTCAA
* * *
33379732 CAGAGTAAAATGACCGAAATACCCTATAGGGTAGAATAACCA
64 CAGAGTAAAATGACCGAAATACCCCATAGGATAAAATAACCA
33379774 AAATACCCTCATAGG
1 AAATACCCTCATAGG
33379789 GTAGACTGAT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
104 3 0.03
105 79 0.77
106 8 0.08
107 12 0.12
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.19
Consensus pattern (105 bp):
AAATACCCTCATAGGTAAATGACTAAAATACACCCATAGGGTAAAATGACCGAAATACCTCAACA
GAGTAAAATGACCGAAATACCCCATAGGATAAAATAACCA
Found at i:33379907 original size:81 final size:81
Alignment explanation
Indices: 33379555--33379878 Score: 292
Period size: 80 Copynumber: 4.0 Consensus size: 81
33379545 TTTACACTGT
* * * * * * * *
33379555 ATGATTGAAATACCCCCATA-GAGTAGAATGATCGAA-ATACACCCATAGGGTAAAATGACCGAA
1 ATGATCGAAATACCCTCATAGGA-TAAAATGA-CTAAGATACCCCCATAGGGAAAAATAACCAAA
* *
33379618 ATA-CCTCAATAGGGTGAA
64 ATACCCTC-ATAAGGTAAA
** * * *
33379636 ATGATCGAAATACCC-CATAGGATAAAATGACTGAA-ATACCCTGATA-GG-TAAATGACTAAAA
1 ATGATCGAAATACCCTCATAGGATAAAATGACT-AAGATACCCCCATAGGGAAAAATAACCAAAA
*
33379697 TACCC-CTATAGGGTAAA
65 TACCCTC-ATAAGGTAAA
* * * * *
33379714 ATGATCGAAATACCCTCACA-GAGTAAAATGACCGAA-ATA-CCCTATAGGGTAGAATAACCAAA
1 ATGATCGAAATACCCTCATAGGA-TAAAATGA-CTAAGATACCCCCATAGGGAAAAATAACCAAA
* *
33379776 ATACCCTCATAGGGTAGA
64 ATACCCTCATAAGGTAAA
*
33379794 CTGATCGAAATACCCTCATAGGATAAAATGACTAAGATACCCCCATAGGGAAAAATAACCAAAAT
1 ATGATCGAAATACCCTCATAGGATAAAATGACTAAGATACCCCCATAGGGAAAAATAACCAAAAT
33379859 ACCCTCATAAGGTAAA
66 ACCCTCATAAGGTAAA
33379875 ATGA
1 ATGA
33379879 CTGTTATACC
Statistics
Matches: 202, Mismatches: 29, Indels: 24
0.79 0.11 0.09
Matches are distributed among these distances:
78 44 0.22
79 26 0.13
80 74 0.37
81 58 0.29
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.20
Consensus pattern (81 bp):
ATGATCGAAATACCCTCATAGGATAAAATGACTAAGATACCCCCATAGGGAAAAATAACCAAAAT
ACCCTCATAAGGTAAA
Found at i:33388099 original size:40 final size:40
Alignment explanation
Indices: 33388035--33388287 Score: 260
Period size: 40 Copynumber: 6.3 Consensus size: 40
33388025 AGATATCTAT
* *
33388035 TGAATCTACTGAAATGTATATGCTTTCGAGCCATACCTAC
1 TGAATCTACTGAAACGTATGTGCTTTCGAGCCATACCTAC
* * * * *
33388075 TGAATCTACTGAAAGGTATGTGCTTTTGAGCGATATCTAT
1 TGAATCTACTGAAACGTATGTGCTTTCGAGCCATACCTAC
* *
33388115 TGAATCTACTGAAACATATGTGCTTTCGAGCCATACTTAC
1 TGAATCTACTGAAACGTATGTGCTTTCGAGCCATACCTAC
** * **
33388155 AAAATCCACTGAAACGTATGCACTTTCGAGCCATACCTAC
1 TGAATCTACTGAAACGTATGTGCTTTCGAGCCATACCTAC
* * * * *
33388195 TG-GTCTCACTGAAATGTATGTGCTATCAAGCCTTACCTAC
1 TGAATCT-ACTGAAACGTATGTGCTTTCGAGCCATACCTAC
* * *
33388235 TGATTCTACTGAAA-GTATGT-TTTATCGAGCCATACCTAA
1 TGAATCTACTGAAACGTATGTGCTT-TCGAGCCATACCTAC
*
33388274 TGATTCTACTGAAA
1 TGAATCTACTGAAA
33388288 GTAGCTCAAA
Statistics
Matches: 174, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.20
40 136 0.78
41 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (40 bp):
TGAATCTACTGAAACGTATGTGCTTTCGAGCCATACCTAC
Found at i:33388332 original size:38 final size:37
Alignment explanation
Indices: 33388280--33388398 Score: 125
Period size: 37 Copynumber: 3.2 Consensus size: 37
33388270 CTAATGATTC
* * *
33388280 TACTGAAAGTAGCTCAAACGAGCAAATTTTACTGTTA
1 TACTGAATGGAGCTCAAACGAGCAAATTCTACTGTTA
*
33388317 TACTG-ATGTGAAGCTCAAATGAGCAAATTCTACTGTTA
1 TACTGAATG-G-AGCTCAAACGAGCAAATTCTACTGTTA
* * * *
33388355 TACTGAATGGAGCTCAAATGAGTAAAATCTA-TAGATA
1 TACTGAATGGAGCTCAAACGAGCAAATTCTACT-GTTA
33388392 TACTGAA
1 TACTGAA
33388399 ATAAAGCTCA
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
36 3 0.04
37 34 0.48
38 31 0.44
39 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (37 bp):
TACTGAATGGAGCTCAAACGAGCAAATTCTACTGTTA
Found at i:33388394 original size:37 final size:39
Alignment explanation
Indices: 33388290--33388398 Score: 118
Period size: 38 Copynumber: 2.9 Consensus size: 39
33388280 TACTGAAAGT
* * * *
33388290 AGCTCAAACGAGCAAATTTTACTGTTATACTG-ATGTGA
1 AGCTCAAATGAGCAAAATCTACTGATATACTGAATGTGA
* *
33388328 AGCTCAAATGAGCAAATTCTACTGTTATACTGAATG-G-
1 AGCTCAAATGAGCAAAATCTACTGATATACTGAATGTGA
*
33388365 AGCTCAAATGAGTAAAATCTA-TAGATATACTGAA
1 AGCTCAAATGAGCAAAATCTACT-GATATACTGAA
33388399 ATAAAGCTCA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
36 1 0.02
37 29 0.45
38 31 0.48
39 3 0.05
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (39 bp):
AGCTCAAATGAGCAAAATCTACTGATATACTGAATGTGA
Found at i:33393750 original size:46 final size:46
Alignment explanation
Indices: 33393697--33393790 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
33393687 TAATGTAACA
*
33393697 CTCAAAATTGACGGGTCCTACGTTGGGCGAATAGCCCGAAGGAAAT
1 CTCAAAATTGACGGGTCCTACGTTGGGCGAATAGCCCAAAGGAAAT
*
33393743 CTCAAAATTGACGGGTCCTACGTTGGGTGAATAGCCCAAAGGAAAT
1 CTCAAAATTGACGGGTCCTACGTTGGGCGAATAGCCCAAAGGAAAT
33393789 CT
1 CT
33393791 TAGTGTCGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (46 bp):
CTCAAAATTGACGGGTCCTACGTTGGGCGAATAGCCCAAAGGAAAT
Found at i:33395167 original size:26 final size:26
Alignment explanation
Indices: 33395138--33395257 Score: 152
Period size: 26 Copynumber: 4.6 Consensus size: 26
33395128 ATCCCTATCA
33395138 GTGGCATATCTAAAATGGAAGACTTT
1 GTGGCATATCTAAAATGGAAGACTTT
*
33395164 GTGGCATATCTGAAATGGAA-ACCTTT
1 GTGGCATATCTAAAATGGAAGA-CTTT
*
33395190 GTGGCATATCTAAAATGGAAGCCTTT
1 GTGGCATATCTAAAATGGAAGACTTT
* * *
33395216 GTAGCATATCTGAAATGGAAGCCTTT
1 GTGGCATATCTAAAATGGAAGACTTT
* *
33395242 ATGGCAAACTCTAAAA
1 GTGGCATA-TCTAAAA
33395258 GAGAGAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
25 1 0.01
26 75 0.91
27 6 0.07
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (26 bp):
GTGGCATATCTAAAATGGAAGACTTT
Found at i:33395216 original size:52 final size:52
Alignment explanation
Indices: 33395138--33395257 Score: 186
Period size: 52 Copynumber: 2.3 Consensus size: 52
33395128 ATCCCTATCA
*
33395138 GTGGCATATCTAAAATGGAAGACTTTGTGGCATATCTGAAATGGAAACCTTT
1 GTGGCATATCTAAAATGGAAGACTTTGTAGCATATCTGAAATGGAAACCTTT
* *
33395190 GTGGCATATCTAAAATGGAAGCCTTTGTAGCATATCTGAAATGGAAGCCTTT
1 GTGGCATATCTAAAATGGAAGACTTTGTAGCATATCTGAAATGGAAACCTTT
* *
33395242 ATGGCAAACTCTAAAA
1 GTGGCATA-TCTAAAA
33395258 GAGAGAAATG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
52 55 0.89
53 7 0.11
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (52 bp):
GTGGCATATCTAAAATGGAAGACTTTGTAGCATATCTGAAATGGAAACCTTT
Found at i:33419903 original size:50 final size:50
Alignment explanation
Indices: 33419848--33419990 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 50
33419838 TATTGAGGTT
* *
33419848 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCGTTGGCATCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATTGGCACCGAG
* * * *
33419898 ATGAGAGGTCCCCCCTAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATTGGCACCGAG
** * * * * *
33419948 ATGAGAACTCACATGTAAGACCATATCTGGGATATGGCATTGG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATTGG
33419991 TAGTACAGGA
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATTGGCACCGAG
Found at i:33420268 original size:20 final size:20
Alignment explanation
Indices: 33420243--33420291 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
33420233 TGAGTTATTT
33420243 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
* *
33420263 AAGTAA-AAGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
33420283 AAG-AAGCAA
1 AAGTAAGCAA
33420292 AGACCATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.59, C:0.06, G:0.22, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:33427608 original size:50 final size:52
Alignment explanation
Indices: 33427489--33427722 Score: 196
Period size: 50 Copynumber: 4.6 Consensus size: 52
33427479 GAGAATGAGA
* * *
33427489 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACTGAGG-TATAAGAGG
*
33427545 TCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACTGA-G-ATAAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGGTATAAGAGG
* * * **
33427595 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGA--TATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGGTATAAGAGG
* * * * * * * *
33427645 TCCCATGTAAGATCATATCTGGGATATGACATTGGCAGTACAGG-A-AACA--
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACT-GAGGTATAAGAGG
* *
33427694 TCCCATGTAAGACCATGTCTGAGACATGG
1 TCCCACGTAAGACCATGTCTGGGACATGG
33427723 TTTTGGCATG
Statistics
Matches: 148, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
49 24 0.16
50 81 0.55
51 3 0.02
52 2 0.01
53 4 0.03
56 34 0.23
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (52 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGGTATAAGAGG
Found at i:33427680 original size:100 final size:102
Alignment explanation
Indices: 33427495--33427681 Score: 234
Period size: 100 Copynumber: 1.8 Consensus size: 102
33427485 GAGATCCCAT
* * **
33427495 GTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGGGC--TACTGA-G-TATGAGAACTCCCACGTAAGACCA
* * *
33427560 TGTCTGGGACATGGCGTTGGCACTGAGATAAGAGGTCCCCC
62 TATCTGGGACATGACATTGGCACTGAGATAAGAGGTCCCCC
* *
33427601 GTAAGACCATGTCTGGGACATGGCATGGGC-ACTGA-TATGAGAACTCCCATGTAAGATCATATC
1 GTAAGACCATGTCTGGGACATGGCATGGGCTACTGAGTATGAGAACTCCCACGTAAGACCATATC
*
33427664 TGGGATATGACATTGGCA
66 TGGGACATGACATTGGCA
33427682 GTACAGGAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
100 38 0.54
103 4 0.06
106 29 0.41
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (102 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCTACTGAGTATGAGAACTCCCACGTAAGACCATATC
TGGGACATGACATTGGCACTGAGATAAGAGGTCCCCC
Found at i:33429655 original size:16 final size:16
Alignment explanation
Indices: 33429634--33429665 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33429624 CATGCGCATG
33429634 AATAAATAATAATAAT
1 AATAAATAATAATAAT
33429650 AATAAATAATAATAAT
1 AATAAATAATAATAAT
33429666 GATACAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAAATAATAATAAT
Found at i:33429657 original size:13 final size:13
Alignment explanation
Indices: 33429641--33429665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33429631 ATGAATAAAT
33429641 AATAATAATAATA
1 AATAATAATAATA
33429654 AATAATAATAAT
1 AATAATAATAAT
33429666 GATACAAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:33430149 original size:23 final size:22
Alignment explanation
Indices: 33430106--33430163 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
33430096 AAAAGGTATC
* *
33430106 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
33430127 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
33430150 TGCATATCATATCT
1 TACAAATCATATCT
33430164 AATATCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:33430170 original size:12 final size:12
Alignment explanation
Indices: 33430153--33430177 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33430143 CTAAGATTGC
33430153 ATATCATATCTA
1 ATATCATATCTA
33430165 ATATCATATCTA
1 ATATCATATCTA
33430177 A
1 A
33430178 GATTGCATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATCATATCTA
Found at i:33430189 original size:19 final size:19
Alignment explanation
Indices: 33430165--33430226 Score: 115
Period size: 19 Copynumber: 3.3 Consensus size: 19
33430155 ATCATATCTA
33430165 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
*
33430184 ATATCATATCTAAGATTAC
1 ATATCATATCTAAGATTGC
33430203 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
33430222 ATATC
1 ATATC
33430227 CTTGAAGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:33433990 original size:23 final size:26
Alignment explanation
Indices: 33433962--33434021 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 26
33433952 ATCAGCTCTT
33433962 ATGAGCTTACCG-T-TTCAGCTC-G-
1 ATGAGCTTACCGTTCTTCAGCTCAGA
33433984 ATAGAGCTTACCGTTCTTCAGCTCAGA
1 AT-GAGCTTACCGTTCTTCAGCTCAGA
33434011 ATGAGCTTACC
1 ATGAGCTTACC
33434022 AATCATAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.06
23 10 0.30
24 1 0.03
25 8 0.24
26 10 0.30
27 2 0.06
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (26 bp):
ATGAGCTTACCGTTCTTCAGCTCAGA
Found at i:33434021 original size:26 final size:22
Alignment explanation
Indices: 33433953--33434021 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 22
33433943 TACCGATATA
*
33433953 TCAGCTCTTATGAGCTTACCGTT
1 TCAGCTC-GATGAGCTTACCGTT
33433976 TCAGCTCGATAGAGCTTACCGTTCT
1 TCAGCTCGAT-GAGCTTACCG-T-T
33434001 TCAGCTCAGAATGAGCTTACC
1 TCAGCTC-G-ATGAGCTTACC
33434022 AATCATAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
22 2 0.05
23 17 0.43
24 1 0.03
25 8 0.20
26 10 0.25
27 2 0.05
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (22 bp):
TCAGCTCGATGAGCTTACCGTT
Found at i:33438640 original size:140 final size:140
Alignment explanation
Indices: 33438388--33438674 Score: 459
Period size: 140 Copynumber: 2.1 Consensus size: 140
33438378 ATACAAACTA
* * *
33438388 AATGAATAACTTAAACTTTGAAGAGACTTTATCACCATACGGTCTGGTGGAGCTATTAAAATCAA
1 AATGAATAACTTAAAATTTGAAGAGAATTTATCACCATACGGTCTGATGGAGCTATTAAAATCAA
* *
33438453 CATAGGTTCCGCTTCGGCAGGAGGAGTTTTGAGAGACTAAAATGGTGAATAGATCATTGGGTTCA
66 CACAGGTTCCGCTTCGGCAGGAGGAGTTTTGAGAGACCAAAATGGTGAATAGATCATTGGGTTCA
33438518 ATCACAAAAT
131 ATCACAAAAT
* * *
33438528 AATGAATAACTTAAAATTTGAAGAGAATTTATCACCATATGGTTTGATGGAGCTGTTAAAATCAA
1 AATGAATAACTTAAAATTTGAAGAGAATTTATCACCATACGGTCTGATGGAGCTATTAAAATCAA
* * *
33438593 CACAGGTTCTGCTTCGGCAGGAGGAGTTTTGAGAGACCAAAATGGTGAATGGATCATTGGTTTCA
66 CACAGGTTCCGCTTCGGCAGGAGGAGTTTTGAGAGACCAAAATGGTGAATAGATCATTGGGTTCA
*
33438658 ATCGCAAAAT
131 ATCACAAAAT
33438668 AA-GAATA
1 AATGAATA
33438675 TGTTCTATTT
Statistics
Matches: 135, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
139 5 0.04
140 130 0.96
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (140 bp):
AATGAATAACTTAAAATTTGAAGAGAATTTATCACCATACGGTCTGATGGAGCTATTAAAATCAA
CACAGGTTCCGCTTCGGCAGGAGGAGTTTTGAGAGACCAAAATGGTGAATAGATCATTGGGTTCA
ATCACAAAAT
Found at i:33453840 original size:24 final size:25
Alignment explanation
Indices: 33453813--33453878 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
33453803 GTACCTTTCT
*
33453813 TTTTCTTTTTTTTCTTTCCTAT-TA
1 TTTTCTTATTTTTCTTTCCTATCTA
* *
33453837 TTTTCCCTCA-TTTTC-TTCCTTTCTA
1 TTTT--CTTATTTTTCTTTCCTATCTA
33453862 TTTTCTTATTTTTCTTT
1 TTTTCTTATTTTTCTTT
33453879 TTCTTTCACT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
23 3 0.09
24 15 0.45
25 13 0.39
26 2 0.06
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTCTTATTTTTCTTTCCTATCTA
Found at i:33459221 original size:109 final size:110
Alignment explanation
Indices: 33459092--33459289 Score: 371
Period size: 109 Copynumber: 1.8 Consensus size: 110
33459082 CAAAGAGGAC
33459092 ATAGGCTACCATGTTACTAGTTCTAAAAATATGTTGAAATCGAATGACATTAATGTTAGAATAAT
1 ATAGGCTACCATGTTACTAGTTCTAAAAATATGTTGAAATCGAATGACATTAATGTTAGAATAAT
*
33459157 AAAACTTT-ATATAAAATTAGAACCATAACATATTTAACAAGCGT
66 AAAAATTTAATATAAAATTAGAACCATAACATATTTAACAAGCGT
*
33459201 ATAGGCTACCATGTTACTAGTTCTAAAAATATGTTGAAATCGAATGACATTAATGTTAGAATCAT
1 ATAGGCTACCATGTTACTAGTTCTAAAAATATGTTGAAATCGAATGACATTAATGTTAGAATAAT
33459266 AAAAATTTAATATAAAATTAGAAC
66 AAAAATTTAATATAAAATTAGAAC
33459290 TGTAACTTAG
Statistics
Matches: 86, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
109 71 0.83
110 15 0.17
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.32
Consensus pattern (110 bp):
ATAGGCTACCATGTTACTAGTTCTAAAAATATGTTGAAATCGAATGACATTAATGTTAGAATAAT
AAAAATTTAATATAAAATTAGAACCATAACATATTTAACAAGCGT
Found at i:33462289 original size:22 final size:23
Alignment explanation
Indices: 33462261--33462376 Score: 82
Period size: 22 Copynumber: 5.1 Consensus size: 23
33462251 AAAATTTTAA
*
33462261 CAGCATATATACAACAAA-TGGG
1 CAGCATATATACAACAAATTGAG
33462283 CAGCATA-A-ACATACCAAATTGAG
1 CAGCATATATACA-A-CAAATTGAG
* * * * *
33462306 CAGCATTTTTACACCAAAATTTAA
1 CAGCATATATACAAC-AAATTGAG
*
33462330 CAGCATATATACAACAAA-TGGG
1 CAGCATATATACAACAAATTGAG
33462352 CAGCATATACGTAC--CAAATTGAG
1 CAGCATATA--TACAACAAATTGAG
33462375 CA
1 CA
33462377 ACATTTTTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 17
0.71 0.13 0.17
Matches are distributed among these distances:
20 3 0.04
21 2 0.03
22 25 0.35
23 18 0.25
24 21 0.29
25 3 0.04
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.22
Consensus pattern (23 bp):
CAGCATATATACAACAAATTGAG
Found at i:33462321 original size:23 final size:23
Alignment explanation
Indices: 33462126--33462392 Score: 93
Period size: 23 Copynumber: 11.5 Consensus size: 23
33462116 TGGACAACTC
* *
33462126 TTATACATCAATTTG-GACAGCAT
1 TTATACACCAAATTGAG-CAGCAT
* * *
33462149 TTATATACCAAATTAAACAGCAT
1 TTATACACCAAATTGAGCAGCAT
33462172 TTATACACCAAAATTTG-GACAGC-T
1 TTATACACC-AAA-TTGAG-CAGCAT
* *
33462196 TATATACAACAAA-TGGGCAGCAT
1 T-TATACACCAAATTGAGCAGCAT
* * * * * **
33462219 ATACATACTAAATTTAATAGCACT
1 TTATACACCAAATTGAGCAGCA-T
* *
33462243 TT-TACACCAAAATTTTAACAGCAT
1 TTATACACC-AAA-TTGAGCAGCAT
* * *
33462267 ATATACAACAAA-TGGGCAGCAT
1 TTATACACCAAATTGAGCAGCAT
** * *
33462289 AAACATACCAAATTGAGCAGCAT
1 TTATACACCAAATTGAGCAGCAT
* * *
33462312 TTTTACACCAAAATTTAACAGCAT
1 TTATACACC-AAATTGAGCAGCAT
* * *
33462336 ATATACAACAAA-TGGGCAGCA-
1 TTATACACCAAATTGAGCAGCAT
*
33462357 -TATACGTACCAAATTGAGCAACAT
1 TTATAC--ACCAAATTGAGCAGCAT
*
33462381 TTTTACACCAAA
1 TTATACACCAAA
33462393 ATTTAACAGC
Statistics
Matches: 175, Mismatches: 50, Indels: 38
0.67 0.19 0.14
Matches are distributed among these distances:
20 5 0.03
22 39 0.22
23 64 0.37
24 36 0.21
25 31 0.18
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.27
Consensus pattern (23 bp):
TTATACACCAAATTGAGCAGCAT
Found at i:33462367 original size:69 final size:69
Alignment explanation
Indices: 33462143--33462404 Score: 371
Period size: 70 Copynumber: 3.8 Consensus size: 69
33462133 TCAATTTGGA
* * * * * *
33462143 CAGCATTTATATACCAAATTAAACAGCATTTATACACCAAAATTTGGACAGCTTATATACAACAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTT-AACAGCATATATACAACAA
33462208 ATGGG
65 ATGGG
* * * *
33462213 CAGCATATACATACTAAATTTAATAGCACTTTTACACCAAAATTTTAACAGCATATATACAACAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAA-TTTAACAGCATATATACAACAA
33462278 ATGGG
65 ATGGG
* *
33462283 CAGCATAAACATACCAAATTGAGCAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
33462348 TGGG
66 TGGG
* * *
33462352 CAGCATATACGTACCAAATTGAGCAACATTTTTACACCAAAATTTAACAGCAT
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCAT
33462405 GTACATAATA
Statistics
Matches: 173, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
69 77 0.45
70 93 0.54
71 3 0.02
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (69 bp):
CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
TGGG
Found at i:33462394 original size:139 final size:139
Alignment explanation
Indices: 33462153--33462404 Score: 380
Period size: 139 Copynumber: 1.8 Consensus size: 139
33462143 CAGCATTTAT
* *
33462153 ATACCAAATTAAACAGCATTTATACACCAAAATTTGGACAGCTTATATACAACAAATGGGCAGCA
1 ATACCAAATTAAACAGCATTTATACACCAAAATTTGAACAGCATATATACAACAAATGGGCAGCA
* * * *
33462218 TATACATACTAAATTTAATAGCACTTTTACACCAAAATTTTAACAGCATATATACAACAAATGGG
66 TATACATACCAAATTGAACAACACTTTTACACCAAAA-TTTAACAGCATATATACAACAAATGGG
33462283 CAGCATAAAC
130 CAGCATAAAC
* * *
33462293 ATACCAAATTGAGCAGCATTTTTACACCAAAATTT-AACAGCATATATACAACAAATGGGCAGCA
1 ATACCAAATTAAACAGCATTTATACACCAAAATTTGAACAGCATATATACAACAAATGGGCAGCA
* * *
33462357 TATACGTACCAAATTGAGCAACATTTTTACACCAAAATTTAACAGCAT
66 TATACATACCAAATTGAACAACACTTTTACACCAAAATTTAACAGCAT
33462405 GTACATAATA
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
138 11 0.11
139 57 0.57
140 32 0.32
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (139 bp):
ATACCAAATTAAACAGCATTTATACACCAAAATTTGAACAGCATATATACAACAAATGGGCAGCA
TATACATACCAAATTGAACAACACTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGC
AGCATAAAC
Found at i:33463297 original size:41 final size:41
Alignment explanation
Indices: 33463223--33463366 Score: 189
Period size: 41 Copynumber: 3.5 Consensus size: 41
33463213 CATTGGCATC
* ** * * *
33463223 AAGCCTGCCAGGCACCAAGCCCGATACATTTCACCGGCACA
1 AAGCCTGCTAGGCATAAAGCCTGATATAATTCACCGGCACA
* **
33463264 AAGCCTGCTAGACATAAAGTTTGATATAATTCACCGGCACA
1 AAGCCTGCTAGGCATAAAGCCTGATATAATTCACCGGCACA
* *
33463305 GAGCCTGCTAGGCATAAAGCCTGATATAATTCACCGGCATA
1 AAGCCTGCTAGGCATAAAGCCTGATATAATTCACCGGCACA
33463346 AAGCCTGCTAGGCATAAAGCC
1 AAGCCTGCTAGGCATAAAGCC
33463367 GGAACTTACA
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCTGATATAATTCACCGGCACA
Found at i:33463799 original size:10 final size:10
Alignment explanation
Indices: 33463784--33463813 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
33463774 TTTTAACTTT
33463784 TATTTATTTA
1 TATTTATTTA
33463794 TATTTATTTA
1 TATTTATTTA
*
33463804 TATATATTTA
1 TATTTATTTA
33463814 AAAATCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TATTTATTTA
Found at i:33463801 original size:14 final size:14
Alignment explanation
Indices: 33463782--33463813 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
33463772 TATTTTAACT
*
33463782 TTTATTTATTTATA
1 TTTATTTATATATA
33463796 TTTATTTATATATA
1 TTTATTTATATATA
33463810 TTTA
1 TTTA
33463814 AAAATCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTATATATA
Found at i:33475041 original size:27 final size:27
Alignment explanation
Indices: 33474987--33475052 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
33474977 CACAATGTAC
* *
33474987 CCCATGTTTACTGTTCTGGTGGATTAT
1 CCCATGTTTACTGTTCTGGAGGACTAT
*
33475014 CCCTTGTTTACTG-TCTTGGAGGACTAT
1 CCCATGTTTACTGTTC-TGGAGGACTAT
33475041 CCCATGTTTACT
1 CCCATGTTTACT
33475053 TTCCTGACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (27 bp):
CCCATGTTTACTGTTCTGGAGGACTAT
Found at i:33484545 original size:25 final size:25
Alignment explanation
Indices: 33484485--33484545 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
33484475 CTCCAAAATT
*
33484485 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
33484510 TTTATTGAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
33484535 TTAATTAAATT
1 TTAATTAAATT
33484546 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:33492079 original size:21 final size:22
Alignment explanation
Indices: 33492036--33492080 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
33492026 TCTTAATGTA
33492036 AAAATGCTAACTAAAATGTCTT
1 AAAATGCTAACTAAAATGTCTT
*
33492058 AAAATG-TAAC-AAAGTGTACTT
1 AAAATGCTAACTAAAATGT-CTT
33492079 AA
1 AA
33492081 GTACAAGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 9 0.43
22 6 0.29
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (22 bp):
AAAATGCTAACTAAAATGTCTT
Found at i:33492509 original size:10 final size:10
Alignment explanation
Indices: 33492494--33492518 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33492484 TTTATTTTCC
33492494 TTTTTTCTTT
1 TTTTTTCTTT
33492504 TTTTTTCTTT
1 TTTTTTCTTT
33492514 TTTTT
1 TTTTT
33492519 AATGGAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:33509130 original size:79 final size:81
Alignment explanation
Indices: 33509028--33509211 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
33509018 GCTCCTCGTT
* *
33509028 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
33509090 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
33509108 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
33509172 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
33509188 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33509212 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:33509145 original size:39 final size:41
Alignment explanation
Indices: 33509028--33509211 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
33509018 GCTCCTCGTT
* *
33509028 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
33509068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
33509108 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
33509147 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
33509188 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33509212 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:33517010 original size:40 final size:40
Alignment explanation
Indices: 33516966--33517227 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
33516956 GCTCCTCGTT
* *
33516966 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
33517006 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33517046 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33517085 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33517124 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
33517163 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
33517204 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33517228 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:33529571 original size:19 final size:19
Alignment explanation
Indices: 33529547--33529584 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33529537 AATAATTTAT
*
33529547 TATAAATTA-TATATGTATA
1 TATAAAATAGTAT-TGTATA
33529566 TATAAAATAGTATTGTATA
1 TATAAAATAGTATTGTATA
33529585 AAAACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (19 bp):
TATAAAATAGTATTGTATA
Found at i:33530414 original size:21 final size:19
Alignment explanation
Indices: 33530375--33530448 Score: 112
Period size: 19 Copynumber: 3.8 Consensus size: 19
33530365 AATCATATCT
33530375 TCCAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
33530394 TCCAAGATTGCATAAATCATA
1 TCCAAGATTGCAT--ATCATA
*
33530415 TCTAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
*
33530434 TCTAAGATTGCATAT
1 TCCAAGATTGCATAT
33530449 GCTTGAAGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (19 bp):
TCCAAGATTGCATATCATA
Found at i:33530428 original size:40 final size:42
Alignment explanation
Indices: 33530355--33530447 Score: 138
Period size: 40 Copynumber: 2.3 Consensus size: 42
33530345 TTAAATCTCT
*
33530355 AAGATTACA-AAATCATATCTTCCAAGATTGCATATCATATCC
1 AAGATTGCATAAATCATATCTT-CAAGATTGCATATCATATCC
*
33530397 AAGATTGCATAAATCATATC-T-AAGATTGCATATCATATCT
1 AAGATTGCATAAATCATATCTTCAAGATTGCATATCATATCC
33530437 AAGATTGCATA
1 AAGATTGCATA
33530448 TGCTTGAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
40 29 0.60
42 9 0.19
43 10 0.21
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (42 bp):
AAGATTGCATAAATCATATCTTCAAGATTGCATATCATATCC
Found at i:33530960 original size:88 final size:88
Alignment explanation
Indices: 33530811--33531852 Score: 1282
Period size: 88 Copynumber: 11.9 Consensus size: 88
33530801 CTTGATCTGA
* * * * * **
33530811 TGCAACTCAGGGAGGCAAGACTTGTGTCTTCGATCTGCTTCGTTGTCGGTGTAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33530876 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* *
33530899 TGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
*
33530964 CTGCTATTTTTAACCTGCTCCGT
66 CTGCTATTTTTAACCTGCTCCGC
* * * * * *
33530987 TGCAACCTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33531052 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * *
33531075 TGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGGAAGGAAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
* * * *
33531140 TTACTATCTTTAACCTGCTCCAC
66 CTGCTATTTTTAACCTGCTCCGC
* * * * **
33531163 TGCCATCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTTAGTACAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33531228 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * **
33531251 TGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTTAGTACAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33531316 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * *
33531339 TGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGGAAGGTAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
* * *
33531404 CTGTTATCTTTAACCTACTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * * * * **
33531427 TGCCACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTAC-TC-CAT-TACTGCT-TAGGGAGATAA
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGC-TGT-C-GGTACAGGAAGGCAA
* * *
33531488 GATCTGCAATTTTCAACCTGCTCTGC
63 GATCTGCTATTTTTAACCTGCTCCGC
* * ** * * *
33531514 TGCAACCCGGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCACTGCCGGTACAGGAAGGTAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33531579 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * * ** *
33531602 TGCAACCCAGAGAGGCAAGACTAGTGTCTTCGATCTGCTTCGTTGTTAGTACAGGAAGACAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
* *
33531667 CTGCTATTTTCAACCTGTTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * * * *
33531690 TGCAACCCAGGGAGGCAAGGTTGGTGTCTTCGATCTACTTTGCTGTCGGTGCAGGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
33531755 CTGCTATTTTTAACCTGCTCCGC
66 CTGCTATTTTTAACCTGCTCCGC
* * * * * * * *
33531778 TACAACTCAGGGAGGCAAGGTTGGAGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGAT
1 TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
*
33531843 CTGTTATTTT
66 CTGCTATTTT
33531853 CACTGATCTG
Statistics
Matches: 838, Mismatches: 109, Indels: 14
0.87 0.11 0.01
Matches are distributed among these distances:
86 2 0.00
87 65 0.08
88 770 0.92
89 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (88 bp):
TGCAACCCAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCGCTGTCGGTACAGGAAGGCAAGAT
CTGCTATTTTTAACCTGCTCCGC
Found at i:33532904 original size:88 final size:88
Alignment explanation
Indices: 33532755--33534070 Score: 1398
Period size: 88 Copynumber: 15.0 Consensus size: 88
33532745 TCAATAGTAC
* * * *
33532755 CCTGCTCCGCTGCCACCGAGGGAGTCAAGGCTAGTGTCTTCAATCAGCTTCA-TTGTTAGTACCA
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTT-TCAGTA-CA
* *
33532819 -GAAGGCAAGATTTGCTATCTTTAA
64 GGAAGGCAAGATCTGCTATTTTTAA
* * *
33532843 CCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTTAATCTACTTCACTTTCAGTACAGG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
*
33532908 AAGGCAAGATCTGCTATTTTCAA
66 AAGGCAAGATCTGCTATTTTTAA
* * * * ** * * *
33532931 CCTACTCCGCTGCATCCCAGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTC-GTTGCTGGTACAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTC-AGTACAG
33532995 GAAGGCAAGATCTGCTATTTTTAA
65 GAAGGCAAGATCTGCTATTTTTAA
** * * * * * *
33533019 CCTGCTCCGCAACAACTC-AGGGAGGCAAGGTTGGTGTCTT-AGATCTGCTTCGCTGTCGGTGCA
1 CCTGCTCCGCTGCAAC-CGAGGGAGGCAAGGCTAGTGTCTTCA-ATCTGCTTCACTTTCAGTACA
33533082 GGAAGGCAAGATCTGCTATTTTTAA
64 GGAAGGCAAGATCTGCTATTTTTAA
* * * * * * * *
33533107 CCTGCTCCGTTGCAACCTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTT-GGTGCAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACT-TTCAGTACAG
33533171 GAAGGCAAGATCTGCTATTTTTAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * * * * * * *
33533195 CCTGCTCCGTTGCAACCTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTT-GGTGCAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACT-TTCAGTACAG
33533259 GAAGGCAAGATCTGCTATTTTTAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * *
33533283 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
* * * *
33533348 AAGGAAAGATTTACTATCTTTAA
66 AAGGCAAGATCTGCTATTTTTAA
* * *
33533371 CCTGCTCCACTGCCATCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTT-AGTACAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACT-TTCAGTACAG
*
33533435 GAAGGCAAGATCTGCTATCTTTAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * * *
33533459 CCTGCTCCACTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGA
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
*
33533524 AAGGCAAGATCTGCTATCTTTAA
66 AAGGCAAGATCTGCTATTTTTAA
* * *
33533547 CCTGCTCTGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
* * *
33533612 AAGGTAAGATCTGTTATCTTTAA
66 AAGGCAAGATCTGCTATTTTTAA
* * * * * * *
33533635 CCTACTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTACTCCA-TTACTGCT-TAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAG-TACAG
* ** * *
33533698 GGAGATAAGATCTGCAATTTTCAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * ** ** *
33533722 CCTGCTCTGCTGCAACCCG-GGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCACTGCCGGTACAG
1 CCTGCTCCGCTGCAA-CCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAG
*
33533786 GAAGGTAAGATCTGCTATTTTTAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * * * * *
33533810 CCTGCTCCGCTGCAACCCAGAGAGGCAAGACTAGTGTCTTCGATCTGCTTC-GTTGTTAGTACAG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTT-TCAGTACAG
* *
33533874 GAAGACAAGATCTGCTATTTTCAA
65 GAAGGCAAGATCTGCTATTTTTAA
* * * * * * ** * * *
33533898 CCTGTTCCGCTGCAACCCAGGGAGGCAAGGTTGGTGTCTTCGATCTACTTTGCTGTCGGTGCAGG
1 CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
33533963 AAGGCAAGATCTGCTATTTTTAA
66 AAGGCAAGATCTGCTATTTTTAA
* * * * * * * * * *
33533986 CCTGCTCCGCTACAACTC-AGGGAGGCAAGGTTGGAGTCTTCGATCTGCTTCGCTGTCGGTGCAA
1 CCTGCTCCGCTGCAAC-CGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAG
*
33534050 GAAGGCAAGATCTGTTATTTT
65 GAAGGCAAGATCTGCTATTTT
33534071 CACTGATCTG
Statistics
Matches: 1078, Mismatches: 130, Indels: 40
0.86 0.10 0.03
Matches are distributed among these distances:
87 75 0.07
88 994 0.92
89 9 0.01
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (88 bp):
CCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTTTCAGTACAGG
AAGGCAAGATCTGCTATTTTTAA
Found at i:33533089 original size:44 final size:44
Alignment explanation
Indices: 33533036--33533267 Score: 125
Period size: 44 Copynumber: 5.3 Consensus size: 44
33533026 CGCAACAACT
*
33533036 CAGGGAGGCAAGGTTGGTGTCTTAGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGGTTGGTGTCTTAGATCTGCTTCGCTGTCGGTG
* * * * * * * ***
33533080 CAGGAAGGCAAGATCTGCTATTTTTA-ACCTGCTCCGTTG-C-AAC
1 CAGGAAGGCAAGGT-TGGT-GTCTTAGATCTGCTTCGCTGTCGGTG
* * *
33533123 CTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTTGGTG
1 C-AGGAAGGCAAGGTTGGTGTCTTAGATCTGCTTCGCTGTCGGTG
* * * * * * * ***
33533168 CAGGAAGGCAAGATCTGCTATTTTTA-ACCTGCTCCGTTG-C-AAC
1 CAGGAAGGCAAGGT-TGGT-GTCTTAGATCTGCTTCGCTGTCGGTG
* * *
33533211 CTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTTGGTG
1 C-AGGAAGGCAAGGTTGGTGTCTTAGATCTGCTTCGCTGTCGGTG
33533256 CAGGAAGGCAAG
1 CAGGAAGGCAAG
33533268 ATCTGCTATT
Statistics
Matches: 125, Mismatches: 51, Indels: 24
0.62 0.25 0.12
Matches are distributed among these distances:
42 6 0.05
43 28 0.22
44 56 0.45
45 28 0.22
46 7 0.06
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.29
Consensus pattern (44 bp):
CAGGAAGGCAAGGTTGGTGTCTTAGATCTGCTTCGCTGTCGGTG
Found at i:33533232 original size:264 final size:263
Alignment explanation
Indices: 33532755--33534070 Score: 1602
Period size: 264 Copynumber: 5.0 Consensus size: 263
33532745 TCAATAGTAC
* * * * * * *
33532755 CCTGCTCCGCTGCCACCGAGGGAGTCAAGGCTAGTGTCTTCAATCAGCTTCATTGTTAGTACCA-
1 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTA-CAG
* *
33532819 GAAGGCAAGATTTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTT
65 GAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTC
* * * *
33532884 AATCTACTTCACT-TTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCGCTGCATCC
130 AATCTACTTCACTGTT-AGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
* *
33532948 CAGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGTTGCTGGTACAGGAAGGCAAGATCTGCTAT
194 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG-TGGTACAGGAAGGCAAGATCTGCTAT
33533013 TTTTAA
258 TTTTAA
** * ** * * * *
33533019 CCTGCTCCGCAACAACTCAGGGAGGCAAGGTTGGTGTCTT-AGATCTGCTTCGCTGTCGGTGCAG
1 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCA-ATCTGCTTCACTGTCAGTACAG
* * * * * *
33533083 GAAGGCAAGATCTGCTATTTTTAACCTGCTCCGTTGCAACCTAGGGAGGCAAGGTTGGTGTCTTC
65 GAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTC
* * * * * *
33533148 GATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGTTGCAACCT
130 AATCTACTTCACTGTTAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
* *
33533213 AGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATCTGCTATT
195 AGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG-TGGTACAGGAAGGCAAGATCTGCTATT
33533278 TTTAA
259 TTTAA
33533283 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
1 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
* * * * *
33533348 AAGGAAAGATTTACTATCTTTAACCTGCTCCACTGCCATCGAGGGAGGCAAGGCTAGTGTCTTCA
66 AAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCA
* * * * * *
33533413 ATCTGCTTCACTGTTAGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCCACCGA
131 ATCTACTTCACTGTTAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* * * * * *
33533478 GGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGAAAGGCAAGATCTGCTATCT
196 GGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGT-GGTACAGGAAGGCAAGATCTGCTATTT
33533543 TTAA
260 TTAA
* * * *
33533547 CCTGCTCTGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
1 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
* * *
33533612 AAGGTAAGATCTGTTATCTTTAACCTACTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCA
66 AAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCA
* * * ** * * *
33533677 ATCTAC-TC-C-ATTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTGCTCTGCTGCAACC
131 ATCTACTTCACTGTTAGTGC--AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
* * * * *
33533739 CGGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCACTGCCGGTACAGGAAGGTAAGATCTGCTAT
194 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG-TGGTACAGGAAGGCAAGATCTGCTAT
33533804 TTTTAA
258 TTTTAA
* * ** *
33533810 CCTGCTCCGCTGCAACCCAGAGAGGCAAGACTAGTGTCTTCGATCTGCTTCGTTGTTAGTACAGG
1 CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
* * * * * *
33533875 AAGACAAGATCTGCTAT-TTTCAACCTGTTCCGCTGCAACCCAGGGAGGCAAGGTTGGTGTCTTC
66 AAGGCAAGATCTGCTATCTTT-AACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTC
* ** ** * *
33533939 GATCTACTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACTC
130 AATCTACTTCACTGTTAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
* * * * *
33534004 AGGGAGGCAAGGTTGGAGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGTTATT
195 AGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGT-GGTACAGGAAGGCAAGATCTGCTATT
33534069 TT
259 TT
33534071 CACTGATCTG
Statistics
Matches: 889, Mismatches: 150, Indels: 26
0.83 0.14 0.02
Matches are distributed among these distances:
261 5 0.01
262 4 0.00
263 213 0.24
264 659 0.74
265 4 0.00
266 4 0.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (263 bp):
CCTGCTCCGCTGCAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAGG
AAGGCAAGATCTGCTATCTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCA
ATCTACTTCACTGTTAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
GGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTGGTACAGGAAGGCAAGATCTGCTATTTT
TAA
Done.