Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 110 of 161
Found at i:35013749 original size:27 final size:27
Alignment explanation
Indices: 35013719--35013792 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
35013709 TATCCTCGAT
* *
35013719 GGGTAAAATGATCGAATTACCCCCACA
1 GGGTAAAATGATCGAAATACCCCCAAA
*
35013746 GGGTAAAATGA-CTGAAATACCCTCAAA
1 GGGTAAAATGATC-GAAATACCCCCAAA
* *
35013773 GGATACAATGATCGAAATAC
1 GGGTAAAATGATCGAAATAC
35013793 TCTCATGGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGATCGAAATACCCCCAAA
Found at i:35013839 original size:27 final size:27
Alignment explanation
Indices: 35013809--35013877 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
35013799 GGGGTAAAGG
* *
35013809 GACCGAGATACCCCCT-TACGGTAAAAT
1 GACCGAAATA-CCCCTGTAAGGTAAAAT
*
35013836 GACCAAAATACCCCTGTAAGGTAAAAT
1 GACCGAAATACCCCTGTAAGGTAAAAT
* * *
35013863 AACCGTAATGCCCCT
1 GACCGAAATACCCCT
35013878 AGAGGGTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (27 bp):
GACCGAAATACCCCTGTAAGGTAAAAT
Found at i:35013961 original size:24 final size:24
Alignment explanation
Indices: 35013908--35013963 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
35013898 TCCCTCGAGG
* *
35013908 TTAAATGATTGATTGGTCTGTGAT
1 TTAAATGACTGATTGGTCTGTAAT
** *
35013932 GAAAATGACTGATTTGTCTGTAAT
1 TTAAATGACTGATTGGTCTGTAAT
35013956 TTAAATGA
1 TTAAATGA
35013964 TTGTTTTATC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.41
Consensus pattern (24 bp):
TTAAATGACTGATTGGTCTGTAAT
Found at i:35014151 original size:26 final size:26
Alignment explanation
Indices: 35014116--35014167 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35014106 CATATTCTGT
* **
35014116 TTACTGGTAGCTTTGCTGTGATGCTG
1 TTACTCGTAGCTTTGCTACGATGCTG
35014142 TTACTCGTAGCTTTGCTACGATGCTG
1 TTACTCGTAGCTTTGCTACGATGCTG
35014168 CTAATGGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.13, C:0.19, G:0.27, T:0.40
Consensus pattern (26 bp):
TTACTCGTAGCTTTGCTACGATGCTG
Found at i:35014222 original size:32 final size:32
Alignment explanation
Indices: 35014171--35014322 Score: 133
Period size: 32 Copynumber: 4.8 Consensus size: 32
35014161 GATGCTGCTA
** *
35014171 ATGGCTTTGTGCCGGTCATATTACCGTTACTG
1 ATGGCTTTGTGCCAATCATATTACCGCTACTG
* * * * * *
35014203 ATGACTGTGTGTCAATCATATCACTGCAACTG
1 ATGGCTTTGTGCCAATCATATTACCGCTACTG
* ** **
35014235 ATGGCTTTGTGTCGGTCATATTACCATTACTG
1 ATGGCTTTGTGCCAATCATATTACCGCTACTG
* * * *
35014267 ATGGCTATGTGCCGATCATATCACTGCTACTG
1 ATGGCTTTGTGCCAATCATATTACCGCTACTG
*
35014299 ATGGCTTTGTGCCAACCATATTAC
1 ATGGCTTTGTGCCAATCATATTAC
35014323 TGTATTTATG
Statistics
Matches: 91, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
32 91 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (32 bp):
ATGGCTTTGTGCCAATCATATTACCGCTACTG
Found at i:35014322 original size:64 final size:64
Alignment explanation
Indices: 35014171--35014311 Score: 219
Period size: 64 Copynumber: 2.2 Consensus size: 64
35014161 GATGCTGCTA
* * *
35014171 ATGGCTTTGTGCCGGTCATATTACCGTTACTGATGACTGTGTGTCAATCATATCACTGCAACTG
1 ATGGCTTTGTGCCGGTCATATTACCATTACTGATGACTATGTGCCAATCATATCACTGCAACTG
* * * *
35014235 ATGGCTTTGTGTCGGTCATATTACCATTACTGATGGCTATGTGCCGATCATATCACTGCTACTG
1 ATGGCTTTGTGCCGGTCATATTACCATTACTGATGACTATGTGCCAATCATATCACTGCAACTG
35014299 ATGGCTTTGTGCC
1 ATGGCTTTGTGCC
35014312 AACCATATTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 69 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (64 bp):
ATGGCTTTGTGCCGGTCATATTACCATTACTGATGACTATGTGCCAATCATATCACTGCAACTG
Found at i:35014576 original size:28 final size:28
Alignment explanation
Indices: 35014532--35014588 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
35014522 ACTGTACCGA
* * *
35014532 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTATATTGGGATAAGGCCCACACTGT
*
35014560 TACTATATTGGGATAAGGCCTACACTGT
1 TACTATATTGGGATAAGGCCCACACTGT
35014588 T
1 T
35014589 GCTGCATGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (28 bp):
TACTATATTGGGATAAGGCCCACACTGT
Found at i:35015812 original size:27 final size:27
Alignment explanation
Indices: 35015291--35015800 Score: 582
Period size: 27 Copynumber: 18.9 Consensus size: 27
35015281 TCTTATAACT
*
35015291 GAATTACCCCCATAGGATAAAATGA-C
1 GAATTACCCCCATAGGGTAAAATGATC
35015317 TGAATTACCCCCATAGGGTAAAATGA-C
1 -GAATTACCCCCATAGGGTAAAATGATC
* *
35015344 TGAATTACCCCTATAGGGTAAAATTATC
1 -GAATTACCCCCATAGGGTAAAATGATC
35015372 GAATTACCCCCATAGGGTAAAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015399 GAAATACCCTCATAGGGTAAAATGACC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015426 GAATTACTCTCATAGGGTAAAATGACC
1 GAATTACCCCCATAGGGTAAAATGATC
* *
35015453 GAAATACCCTCATAGGGTAAAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
*
35015480 GAATTACCCCCATAGGGTAAAATAATC
1 GAATTACCCCCATAGGGTAAAATGATC
*
35015507 GAATTACCCCCATAGGGTAAAAT-AAC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015533 TGAATTACCCTCACAGGGTAAAATGACC
1 -GAATTACCCCCATAGGGTAAAATGATC
* *
35015561 GAATTATCCCCATAGGGTAAAAT-AAC
1 GAATTACCCCCATAGGGTAAAATGATC
* *
35015587 TGAATTACCCCCATAGGGTAGAGTGA-C
1 -GAATTACCCCCATAGGGTAAAATGATC
* * *
35015614 TGAAATACCCCCATAAGGTAGAATGATC
1 -GAATTACCCCCATAGGGTAAAATGATC
* *
35015642 GAATTACCCCTATAAGGTAAAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015669 GAAATA-CCCTATAGGGTAGAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015695 GAAATACCTCTATAGGGTAAAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
*
35015722 GAATTACCCCCATAGGGTAAAATGACC
1 GAATTACCCCCATAGGGTAAAATGATC
* * * *
35015749 AAAGTACCCCCATATGGTAGAATGATC
1 GAATTACCCCCATAGGGTAAAATGATC
* * *
35015776 GAAATGCCCCCATAGAGTAAAATGA
1 GAATTACCCCCATAGGGTAAAATGA
35015801 CTATTATACC
Statistics
Matches: 423, Mismatches: 53, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
26 28 0.07
27 390 0.92
28 5 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
GAATTACCCCCATAGGGTAAAATGATC
Found at i:35016008 original size:26 final size:26
Alignment explanation
Indices: 35015969--35016071 Score: 134
Period size: 26 Copynumber: 4.0 Consensus size: 26
35015959 GGAAGTATAT
* *
35015969 TGTTATTGGTAGCTTTGCTGCGATAC
1 TGTTACTGGCAGCTTTGCTGCGATAC
35015995 TGTTACTGGCAGCTTTGCTGCGATAC
1 TGTTACTGGCAGCTTTGCTGCGATAC
** * * *
35016021 TGTTACTGATAGCTTCGTTGTGATAC
1 TGTTACTGGCAGCTTTGCTGCGATAC
*
35016047 TATTACTGGCAGCTTTGCTGCGATA
1 TGTTACTGGCAGCTTTGCTGCGATA
35016072 TTGGTGTGTT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.17, C:0.18, G:0.25, T:0.39
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTGCGATAC
Found at i:35016035 original size:52 final size:52
Alignment explanation
Indices: 35015969--35016071 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
35015959 GGAAGTATAT
* * * *
35015969 TGTTATTGGTAGCTTTGCTGCGATACTGTTACTGGCAGCTTTGCTGCGATAC
1 TGTTACTGATAGCTTCGCTGCGATACTATTACTGGCAGCTTTGCTGCGATAC
* *
35016021 TGTTACTGATAGCTTCGTTGTGATACTATTACTGGCAGCTTTGCTGCGATA
1 TGTTACTGATAGCTTCGCTGCGATACTATTACTGGCAGCTTTGCTGCGATA
35016072 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.17, C:0.18, G:0.25, T:0.39
Consensus pattern (52 bp):
TGTTACTGATAGCTTCGCTGCGATACTATTACTGGCAGCTTTGCTGCGATAC
Found at i:35016216 original size:28 final size:28
Alignment explanation
Indices: 35016182--35016258 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
35016172 GTACCGATAT
35016182 TGTATTGGGCTAAGGCCCACATTATTAC
1 TGTATTGGGCTAAGGCCCACATTATTAC
* * *
35016210 TGTATTGGGCTAAGGCCCATATTGTTAT
1 TGTATTGGGCTAAGGCCCACATTATTAC
35016238 TGTATTGGGCTAAGGCCCACA
1 TGTATTGGGCTAAGGCCCACA
35016259 CTGTACTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACATTATTAC
Found at i:35016271 original size:28 final size:27
Alignment explanation
Indices: 35016182--35016272 Score: 119
Period size: 28 Copynumber: 3.3 Consensus size: 27
35016172 GTACCGATAT
*
35016182 TGTATTGGGCTAAGGCCCACATTATTAC
1 TGTATTGGGCTAAGGCCCACATT-GTAC
* *
35016210 TGTATTGGGCTAAGGCCCATATTGTTAT
1 TGTATTGGGCTAAGGCCCACATTG-TAC
*
35016238 TGTATTGGGCTAAGGCCCACACTGTAC
1 TGTATTGGGCTAAGGCCCACATTGTAC
35016265 TGTTATTG
1 TG-TATTG
35016273 AATAGGGCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 4 0.07
28 51 0.93
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (27 bp):
TGTATTGGGCTAAGGCCCACATTGTAC
Found at i:35016281 original size:33 final size:34
Alignment explanation
Indices: 35016232--35016300 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 34
35016222 AGGCCCATAT
* *
35016232 TGTTATTGTATTGGGCTAAGGCCCACACTGT-AC
1 TGTTATTGAATAGGGCTAAGGCCCACACTGTCAC
* *
35016265 TGTTATTGAATAGGGCTCAGGCCCAGACTGTCAC
1 TGTTATTGAATAGGGCTAAGGCCCACACTGTCAC
35016299 TG
1 TG
35016301 CTTGTTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 27 0.87
34 4 0.13
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (34 bp):
TGTTATTGAATAGGGCTAAGGCCCACACTGTCAC
Found at i:35017508 original size:19 final size:19
Alignment explanation
Indices: 35017484--35017527 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
35017474 AGGGATCAAA
* *
35017484 TTGAGACAAATCA-GAAATT
1 TTGAGA-AAAACATGAAAAT
35017503 TTGAGAAAAACATGAAAAT
1 TTGAGAAAAACATGAAAAT
35017522 TTGAGA
1 TTGAGA
35017528 TGCAGGGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (19 bp):
TTGAGAAAAACATGAAAAT
Found at i:35020913 original size:35 final size:35
Alignment explanation
Indices: 35020817--35020974 Score: 205
Period size: 35 Copynumber: 4.5 Consensus size: 35
35020807 CTTTGTTTTG
* *
35020817 GTGTGTTTTGGATGGA-TAGCTTTTATGAGCATTA
1 GTGTGTTTCGGATGGATTAGCTCTTATGAGCATTA
*
35020851 GTGTGTTTTGGATGGA-TAGCTCTTATGAGCATT-
1 GTGTGTTTCGGATGGATTAGCTCTTATGAGCATTA
*
35020884 GATGTGTTTCGGATGGATTAGCTCTTATGAGCATTG
1 G-TGTGTTTCGGATGGATTAGCTCTTATGAGCATTA
* *
35020920 GTGTGTTCCAGATGGATTAGCTCTTATGAGCATCTA
1 GTGTGTTTCGGATGGATTAGCTCTTATGAGCAT-TA
* *
35020956 GTCTGTTTCGGTTGGATTA
1 GTGTGTTTCGGATGGATTA
35020975 TCGATGTACT
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
33 1 0.01
34 46 0.41
35 47 0.42
36 17 0.15
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.41
Consensus pattern (35 bp):
GTGTGTTTCGGATGGATTAGCTCTTATGAGCATTA
Found at i:35020917 original size:69 final size:71
Alignment explanation
Indices: 35020817--35020974 Score: 207
Period size: 69 Copynumber: 2.3 Consensus size: 71
35020807 CTTTGTTTTG
* * ***
35020817 GTGTGTTTTGGATGGA-TAGCTTTTATGAGCATTAGTGTGTTTTGGATGGA-TAGCTCTTATGAG
1 GTGTGTTTCGGATGGATTAGCTCTTATGAGCATTAGTGTGTTCCAGATGGATTAGCTCTTATGAG
35020880 CAT-T-
66 CATCTA
*
35020884 GATGTGTTTCGGATGGATTAGCTCTTATGAGCATTGGTGTGTTCCAGATGGATTAGCTCTTATGA
1 G-TGTGTTTCGGATGGATTAGCTCTTATGAGCATTAGTGTGTTCCAGATGGATTAGCTCTTATGA
35020949 GCATCTA
65 GCATCTA
* *
35020956 GTCTGTTTCGGTTGGATTA
1 GTGTGTTTCGGATGGATTA
35020975 TCGATGTACT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
67 1 0.01
68 14 0.18
69 29 0.37
70 16 0.21
71 17 0.22
72 1 0.01
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.41
Consensus pattern (71 bp):
GTGTGTTTCGGATGGATTAGCTCTTATGAGCATTAGTGTGTTCCAGATGGATTAGCTCTTATGAG
CATCTA
Found at i:35021192 original size:21 final size:23
Alignment explanation
Indices: 35021162--35021203 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
35021152 TATGAAAATG
35021162 AAAAGAGTAATG-ACAATGAATA
1 AAAAGAGTAATGTACAATGAATA
*
35021184 AAAAG-GTAATGTTCAATGAA
1 AAAAGAGTAATGTACAATGAA
35021204 CGTACATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.55, C:0.05, G:0.19, T:0.21
Consensus pattern (23 bp):
AAAAGAGTAATGTACAATGAATA
Found at i:35024678 original size:33 final size:34
Alignment explanation
Indices: 35024627--35024701 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
35024617 AGATTTCAAC
35024627 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGTTGAACTA
*
35024661 AAATTAATT-CTAACACTTATTTGAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGTTGAACTA
*
35024694 AATTTAAT
1 AAATTAAT
35024702 AAACAAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.40
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGTTGAACTA
Found at i:35033558 original size:16 final size:16
Alignment explanation
Indices: 35033537--35033571 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
35033527 GGAAGATGAA
35033537 ATTTTACTTT-GTTATT
1 ATTTTACTTTAGTT-TT
35033553 ATTTTACTTTAGTTTT
1 ATTTTACTTTAGTTTT
35033569 ATT
1 ATT
35033572 ACTAATTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.69
Consensus pattern (16 bp):
ATTTTACTTTAGTTTT
Found at i:35036493 original size:676 final size:675
Alignment explanation
Indices: 35035203--35036548 Score: 2143
Period size: 676 Copynumber: 2.0 Consensus size: 675
35035193 GGCTGCTCCA
* *
35035203 TTCTTCCTTCTTTGTTGCCCTCATCGGTCAAGGATACCATGAACACTCAATTACTGCTCCAAAAT
1 TTCTTCCTTCTTTGTTGCCCTCACCAGTCAAGGATACCATGAACACTCAATTACTGCTCCAAAAT
*
35035268 GGCTAAAAAAGACCCCTTTCCCAATAGGAGAAATCGGCACAAGAGCAAGGAACTTTGAATGGGAA
66 GGCTAAAAAAGACCCCTTTCCCAAGAGGAGAAATCGGCACAAGAGCAAGGAACTTTGAATGGGAA
*
35035333 AATGAGAGAAAAAAGTGAGAGAGAAGAGAAGAGTCGTGAGAAAAGAGATGTGAATGAGGGAAGAT
131 AATGAGAGAAAAAAGTAAGAGAGAAGAGAAGAGTCGTGAGAAAAGAGATGTGAATGAGGGAAGAT
* * * *
35035398 TTGAATGGGCAGAAAATGGGGTTTTAAATAGCTGAGGATTGCTGCTAAAATGGAAAATTTTAGCA
196 TTGAATGGGCAGAAAAGGGGGGTTTAAATAGCTGAGGATGGCTGCTAAAATAGAAAATTTTAGCA
* *
35035463 GCCAAAGAGCCTCCTCATGACCAGCCATCCTACATTGCAAAGTTGAGACTTTCAACTTTGCTAAA
261 GCCAAAGAGCCCCCTCATGACCAGCCATCCTACATGGCAAAGTTGAGACTTTCAACTTTGCTAAA
* * * * *
35035528 CTTAGCTTGGGGCAAATCCGTAAAGCCTTAATTTAAGGTGAGGTTTGAATGCAATTTGGAAGTAT
326 ATTAGCCTAGGGCAAATCAGTAAAGCCTTAATTTAAGGTAAGGTTTGAATGCAATTTGGAAGTAT
** * * * *
35035593 TCTAAGGGCCTTTTTGTAGCTCATTTAATCAGTTAAAACTGATGATTTGGGTCAGCATTTGAACG
391 TCTAAAAGCCTTTTTGGAGCTCATTTAATCAGCTAAAAATGATAATTTGGGTCAGCATTTGAACG
* * * ***
35035658 ATTCTGGGCTGCCTAATTGGTGGCTGGTTCGGTTTGCTCAATTTGGTTAAACTGGTTCTGTTCAA
456 ATTCTGGGCTGCCCAATTGGTGGCAGGTTCGGTTCGCTCAATTTGGTTAAACTGGTGAAGTTCAA
* *
35035723 CTAGGCCCTTTTTCCATAATTAAATAAAATTAATTTATTTATCCCAAATTAAATTGGGAATAAAT
521 CTAGGCCCTTTTTCCATAATTAAATAAAATTAATTTATGTAGCCCAAATTAAATTGGGAATAAAT
*
35035788 TAAAATGAATTATATTATGAATTAATACACATATTTAGACCATCTTAAGCTGGAAATTATTTTGC
586 TAAAATGAATTATATTATGAATTAATACACATATTTAGACCATCATAAGCTGGAAATTATTTTGC
35035853 CTTGTTACTTCGAATAGCTTTTTCG
651 CTTGTTACTTCGAATAGCTTTTTCG
* * * * *
35035878 TTCTTCCTTCTTTGTTGTCCTCGCCAGTCAAGGCTACTATGAACACTCAATTGCTGCTCCAAAAT
1 TTCTTCCTTCTTTGTTGCCCTCACCAGTCAAGGATACCATGAACACTCAATTACTGCTCCAAAAT
* * * *
35035943 GGCTGAATAAGACCCCTTTCCCAAGAGGAGAAATTGGCACAATAGCAAGGAACTTTGAATGGGAA
66 GGCTAAAAAAGACCCCTTTCCCAAGAGGAGAAATCGGCACAAGAGCAAGGAACTTTGAATGGGAA
* * * ** *
35036008 AATGAGGGAAAAAAGTAAGAGAGGAGAGAAGAGTTGTGAGCGAAGAGATGTGAATGAGGGATGAT
131 AATGAGAGAAAAAAGTAAGAGAGAAGAGAAGAGTCGTGAGAAAAGAGATGTGAATGAGGGAAGAT
*
35036073 TTGAATGGGCAGAAAAGGGGGGTTTATATAGCTGAGGATGGCTGCTTAAAATAGAAAATTTTAGC
196 TTGAATGGGCAGAAAAGGGGGGTTTAAATAGCTGAGGATGGCTGC-TAAAATAGAAAATTTTAGC
* *
35036138 AGCCAAAGAGCCCCCTCATGGCCGGCCATCCTACATGGCAAAGTTGAGACTTTCAACTTTGCTAA
260 AGCCAAAGAGCCCCCTCATGACCAGCCATCCTACATGGCAAAGTTGAGACTTTCAACTTTGCTAA
* *
35036203 AATTAGCCTAGGGCAAATCAGTAAAGCCTTAATTTAAGGTAAGGTTTGAATGTAATTTGGAAGTC
325 AATTAGCCTAGGGCAAATCAGTAAAGCCTTAATTTAAGGTAAGGTTTGAATGCAATTTGGAAGTA
*
35036268 TTCTAAAAGCCTTTTTGGAGCTCATTTAATCAGCTAAAAATGCTAATTTGGGTCAGCATTTGAAC
390 TTCTAAAAGCCTTTTTGGAGCTCATTTAATCAGCTAAAAATGATAATTTGGGTCAGCATTTGAAC
*
35036333 GATTCTGGGCTGCCCAATTGGTGGCAGGTTCGGTTCGCTCAATTTGGTTCAACTGGTGAAGTTCA
455 GATTCTGGGCTGCCCAATTGGTGGCAGGTTCGGTTCGCTCAATTTGGTTAAACTGGTGAAGTTCA
* *
35036398 ACTAGGCCCTTTTTCCATAATTAATTAAAATTAATTTATGTAGCCCAATTTAAATTGGGAATAAA
520 ACTAGGCCCTTTTTCCATAATTAAATAAAATTAATTTATGTAGCCCAAATTAAATTGGGAATAAA
* * * **
35036463 TTAAAATTAATTATATTATGAATTAATACACATATTTGGACCGTCATGGGCTGGAAATTATTTTG
585 TTAAAATGAATTATATTATGAATTAATACACATATTTAGACCATCATAAGCTGGAAATTATTTTG
*
35036528 CCTTGTTACTTCGAATTGCTT
650 CCTTGTTACTTCGAATAGCTT
35036549 CTCAGTTTTG
Statistics
Matches: 610, Mismatches: 60, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
675 217 0.36
676 393 0.64
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (675 bp):
TTCTTCCTTCTTTGTTGCCCTCACCAGTCAAGGATACCATGAACACTCAATTACTGCTCCAAAAT
GGCTAAAAAAGACCCCTTTCCCAAGAGGAGAAATCGGCACAAGAGCAAGGAACTTTGAATGGGAA
AATGAGAGAAAAAAGTAAGAGAGAAGAGAAGAGTCGTGAGAAAAGAGATGTGAATGAGGGAAGAT
TTGAATGGGCAGAAAAGGGGGGTTTAAATAGCTGAGGATGGCTGCTAAAATAGAAAATTTTAGCA
GCCAAAGAGCCCCCTCATGACCAGCCATCCTACATGGCAAAGTTGAGACTTTCAACTTTGCTAAA
ATTAGCCTAGGGCAAATCAGTAAAGCCTTAATTTAAGGTAAGGTTTGAATGCAATTTGGAAGTAT
TCTAAAAGCCTTTTTGGAGCTCATTTAATCAGCTAAAAATGATAATTTGGGTCAGCATTTGAACG
ATTCTGGGCTGCCCAATTGGTGGCAGGTTCGGTTCGCTCAATTTGGTTAAACTGGTGAAGTTCAA
CTAGGCCCTTTTTCCATAATTAAATAAAATTAATTTATGTAGCCCAAATTAAATTGGGAATAAAT
TAAAATGAATTATATTATGAATTAATACACATATTTAGACCATCATAAGCTGGAAATTATTTTGC
CTTGTTACTTCGAATAGCTTTTTCG
Found at i:35045280 original size:19 final size:18
Alignment explanation
Indices: 35045245--35045287 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
35045235 GGGAAAATGA
*
35045245 GAGAAAAAAGTGAGAGAG
1 GAGAGAAAAGTGAGAGAG
*
35045263 GAGAGAAAAGTTGTGAGAG
1 GAGAGAAAAG-TGAGAGAG
*
35045282 AAGAGA
1 GAGAGA
35045288 TGTGAATGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.40, T:0.09
Consensus pattern (18 bp):
GAGAGAAAAGTGAGAGAG
Found at i:35051262 original size:14 final size:14
Alignment explanation
Indices: 35051243--35051270 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35051233 AAGTAGGTGA
35051243 GTACTCCGAGGATC
1 GTACTCCGAGGATC
35051257 GTACTCCGAGGATC
1 GTACTCCGAGGATC
35051271 ATACCCAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (14 bp):
GTACTCCGAGGATC
Found at i:35060167 original size:13 final size:13
Alignment explanation
Indices: 35060149--35060173 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35060139 AAATCTGTTT
35060149 TGAGTGCTGCTCA
1 TGAGTGCTGCTCA
35060162 TGAGTGCTGCTC
1 TGAGTGCTGCTC
35060174 TTGTTAAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (13 bp):
TGAGTGCTGCTCA
Found at i:35060631 original size:16 final size:16
Alignment explanation
Indices: 35060610--35060651 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
35060600 TTATTAAATT
*
35060610 ATATATTTTAATTATA
1 ATATATTTTAATAATA
35060626 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
35060641 AT-TATGTTTAA
1 ATATAT-TTTAA
35060652 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:35060636 original size:15 final size:15
Alignment explanation
Indices: 35060601--35060642 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
35060591 TTAAGAATTT
*
35060601 TATTAAATTAT-ATA
1 TATTTAATTATAATA
35060615 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
35060629 TATTTAATAATAAT
1 TATTTAATTATAAT
35060643 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:35060842 original size:44 final size:45
Alignment explanation
Indices: 35060792--35060886 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 45
35060782 TTACACCTCT
*
35060792 ATTACATTCAACCAAACACAAT-A-ATACTATTACACCTCTATTCC
1 ATTACATTCAACCAAACA-AATGATATACTATTACACCTCTAATCC
* * *
35060836 ATTACATTCAACCAAACAATTGATTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAACAAATGATATACTATTACACCTCTAATCC
35060881 ATTACA
1 ATTACA
35060887 CCTCTATTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 2 0.04
44 19 0.42
45 24 0.53
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.32
Consensus pattern (45 bp):
ATTACATTCAACCAAACAAATGATATACTATTACACCTCTAATCC
Found at i:35060886 original size:16 final size:16
Alignment explanation
Indices: 35060865--35060934 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
35060855 TTGATTTGCT
*
35060865 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
35060881 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
35060897 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
**
35060913 ATTACGTCTCTATTCC
1 ATTACACCTCTATTCC
*
35060929 AATACA
1 ATTACA
35060935 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.27, C:0.34, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:35065782 original size:128 final size:129
Alignment explanation
Indices: 35065545--35065798 Score: 350
Period size: 128 Copynumber: 2.0 Consensus size: 129
35065535 GCTGGGGACT
* *
35065545 TCTCTATAATTAATCCAAAACACTTTTTTTGTTTATTTACAACATAAAAATCACCAATCATCATC
1 TCTCTATAATTAATCCAAAACACCTTTTTTATTTATTTAC-ACATAAAAATCACCAATCATCATC
* * *
35065610 ATTGACATTCTCTGCTCTTCTATCTTTTATTACTCCTCACTTTATCACTCGCACCGTAAAAAACC
65 ATTGACATTCTCTACTCTTCTATCTTTTATTACTCCTCACTTTATCACCCGCACCATAAAAAACC
* * * *
35065675 TCTCTATAATTAATCCAAAACACCTTTTTTATTTATTTAC-TATAAGAATCATCAATCATCATTA
1 TCTCTATAATTAATCCAAAACACCTTTTTTATTTATTTACACATAAAAATCACCAATCATCATCA
** * * *
35065739 TTTCCATTCTCTACTCTTTTATC-TTTATTGCTCCTCATTTTTATCACCCGCACCATAAAA
66 TTGACATTCTCTACTCTTCTATCTTTTATTACTCCTCA-CTTTATCACCCGCACCATAAAA
35065799 CTCACTTAAC
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
127 13 0.12
128 58 0.53
130 38 0.35
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (129 bp):
TCTCTATAATTAATCCAAAACACCTTTTTTATTTATTTACACATAAAAATCACCAATCATCATCA
TTGACATTCTCTACTCTTCTATCTTTTATTACTCCTCACTTTATCACCCGCACCATAAAAAACC
Found at i:35072037 original size:25 final size:24
Alignment explanation
Indices: 35071983--35072054 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
35071973 GTAGCTTCAA
*
35071983 AGAGCCATTTATCAAGAAGCTCGTG
1 AGAGCCA-TTATCGAGAAGCTCGTG
*
35072008 CGAGCCATATATCGAGAAGCTC-TGG
1 AGAGCCAT-TATCGAGAAGCTCGT-G
*
35072033 AGAGCCATTAGTCGGGAAGCTC
1 AGAGCCATTA-TCGAGAAGCTC
35072055 ATGAAAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 4 0.10
25 36 0.90
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (24 bp):
AGAGCCATTATCGAGAAGCTCGTG
Found at i:35072131 original size:24 final size:24
Alignment explanation
Indices: 35072104--35072154 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
35072094 TATCGGGTAG
* *
35072104 CTCAAGAGAGCCAATATTGGGATA
1 CTCAAGAGAGCCAATAATGGGACA
* *
35072128 CTCATGAGAGCTAATAATGGGACA
1 CTCAAGAGAGCCAATAATGGGACA
35072152 CTC
1 CTC
35072155 TTGCAAGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (24 bp):
CTCAAGAGAGCCAATAATGGGACA
Found at i:35081715 original size:25 final size:25
Alignment explanation
Indices: 35081680--35081774 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
35081670 GGAGTTTAGT
*
35081680 GTGCTCTCTGATTATTAGCACGTCA
1 GTGCTATCTGATTATTAGCACGTCA
* *
35081705 GTGTTATCTGATTATTAGCATGTCA
1 GTGCTATCTGATTATTAGCACGTCA
* *
35081730 ATGCTCTCTGATTATTAGCACGTCA
1 GTGCTATCTGATTATTAGCACGTCA
* * *
35081755 GTGCTCTTTGATTACTAGCA
1 GTGCTATCTGATTATTAGCA
35081775 TGCTCTCTGA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (25 bp):
GTGCTATCTGATTATTAGCACGTCA
Found at i:35081740 original size:50 final size:50
Alignment explanation
Indices: 35081681--35081776 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
35081671 GAGTTTAGTG
* *
35081681 TGCTCTCTGATTATTAGCACGTCAGTGTTATCTGATTATTAGCATGTCAA
1 TGCTCTCTGATTATTAGCACGTCAGTGCTATCTGATTACTAGCATGTCAA
* *
35081731 TGCTCTCTGATTATTAGCACGTCAGTGCTCTTTGATTACTAGCATG
1 TGCTCTCTGATTATTAGCACGTCAGTGCTATCTGATTACTAGCATG
35081777 CTCTCTGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40
Consensus pattern (50 bp):
TGCTCTCTGATTATTAGCACGTCAGTGCTATCTGATTACTAGCATGTCAA
Found at i:35081818 original size:22 final size:22
Alignment explanation
Indices: 35081775--35081856 Score: 101
Period size: 22 Copynumber: 3.6 Consensus size: 22
35081765 ATTACTAGCA
35081775 TGCTCTCTGATTATCAGCACATTAG
1 TGCTCTCT-ATT-T-AGCACATTAG
*
35081800 TGCTCTCTATTTAGCACATTTG
1 TGCTCTCTATTTAGCACATTAG
* * *
35081822 TGCTCTCTGTATAGCACTTTAG
1 TGCTCTCTATTTAGCACATTAG
35081844 TGCTCTCTATTTA
1 TGCTCTCTATTTA
35081857 ATAGTGAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 38 0.76
23 1 0.02
24 3 0.06
25 8 0.16
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.43
Consensus pattern (22 bp):
TGCTCTCTATTTAGCACATTAG
Found at i:35083792 original size:28 final size:28
Alignment explanation
Indices: 35083752--35083942 Score: 303
Period size: 28 Copynumber: 6.9 Consensus size: 28
35083742 AACAATACAG
* * * *
35083752 TGTGGGCCTTAGCCTAATGCTGTAATAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
35083780 TGTGGGCCTTAGCCCAATACAGTAACAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
* *
35083808 TGTGGCCCTTAGCCCAATACAGTAAAAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
35083836 TGT-GGCCTTAGCCCAATACAGTAACAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
*
35083863 TGTGGGCCTTAGCCCAATACAGTAATAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
*
35083891 TGTAGGCCTTAGCCCAATACAGTAACAA
1 TGTGGGCCTTAGCCCAATACAGTAACAA
35083919 TGTGGGCCTTAGCCCAATACAGTA
1 TGTGGGCCTTAGCCCAATACAGTA
35083943 TCGGTACAGT
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
27 25 0.17
28 125 0.83
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAATACAGTAACAA
Found at i:35083865 original size:83 final size:84
Alignment explanation
Indices: 35083752--35083942 Score: 305
Period size: 83 Copynumber: 2.3 Consensus size: 84
35083742 AACAATACAG
* * * *
35083752 TGTGGGCCTTAGCCTAATGCTGTAATAATGTGGGCCTTAGCCCAATACAGTAACAATGT-GGCCC
1 TGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAATGTAGG-CC
35083816 TTAGCCCAATACAGTAAAAA
65 TTAGCCCAATACAGTAAAAA
*
35083836 TGT-GGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAATAATGTAGGCCT
1 TGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAATGTAGGCCT
*
35083900 TAGCCCAATACAGTAACAA
66 TAGCCCAATACAGTAAAAA
35083919 TGTGGGCCTTAGCCCAATACAGTA
1 TGTGGGCCTTAGCCCAATACAGTA
35083943 TCGGTACAGT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
83 74 0.75
84 25 0.25
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (84 bp):
TGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAATGTAGGCCT
TAGCCCAATACAGTAAAAA
Found at i:35084034 original size:21 final size:23
Alignment explanation
Indices: 35083969--35084017 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
35083959 ATGCAACCCA
35083969 TCCCAACCCAGCCAACACACCAC
1 TCCCAACCCAGCCAACACACCAC
35083992 TCCCAACCCAGCCAACACACCAC
1 TCCCAACCCAGCCAACACACCAC
35084015 TCC
1 TCC
35084018 GTACCTCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.57, G:0.04, T:0.06
Consensus pattern (23 bp):
TCCCAACCCAGCCAACACACCAC
Found at i:35084376 original size:27 final size:27
Alignment explanation
Indices: 35084334--35084717 Score: 260
Period size: 27 Copynumber: 14.2 Consensus size: 27
35084324 ATAACAATCA
*
35084334 TTACCCTATGGGGGTATTTCAGTCATT
1 TTACCCTATCGGGGTATTTCAGTCATT
* *
35084361 TTATCCTAT-GGAGGTATTTCAATCATT
1 TTACCCTATCGG-GGTATTTCAGTCATT
* * * * *
35084388 CT-CCTCTATAGGGTTATTCCAGTCACT
1 TTACC-CTATCGGGGTATTTCAGTCATT
*
35084415 TTACCCT-TCGGGGCTATTTCGGTCATT
1 TTACCCTATCGGGG-TATTTCAGTCATT
35084442 TTACCCT-TCAGGGGTATTT-AGATCATT
1 TTACCCTATC-GGGGTATTTCAG-TCATT
*
35084469 TTACCCT-TCGGGGGTAATTC-GATCATT
1 TTACCCTATC-GGGGTATTTCAG-TCATT
*
35084496 TTACCC-ATCGCGGGTATTTCAATCATT
1 TTACCCTATCG-GGGTATTTCAGTCATT
* * *
35084523 TTACCCT-TCAGGAGTATTTCGGTTATT
1 TTACCCTATC-GGGGTATTTCAGTCATT
* * *
35084550 TTATCC-ATCAAGGTTATTTCAGTCATT
1 TTACCCTATC-GGGGTATTTCAGTCATT
* *
35084577 TTACCC-ATCGGGGGTATCTCGGTCATT
1 TTACCCTATC-GGGGTATTTCAGTCATT
* *
35084604 TTACCCT-TCGGGGGTAATTC-GACCATT
1 TTACCCTATC-GGGGTATTTCAG-TCATT
35084631 TTACCCT-TCGAGGGTATTTC-GATCATT
1 TTACCCTATCG-GGGTATTTCAG-TCATT
* * * *
35084658 TTACCCTTTGGGGGTAATTCGGTCATT
1 TTACCCTATCGGGGTATTTCAGTCATT
* * *
35084685 TTACACT-TCCGGGGTATATCGGTCATT
1 TTACCCTAT-CGGGGTATTTCAGTCATT
35084712 TTACCC
1 TTACCC
35084718 ACGAATCGCA
Statistics
Matches: 290, Mismatches: 47, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
26 12 0.04
27 266 0.92
28 12 0.04
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (27 bp):
TTACCCTATCGGGGTATTTCAGTCATT
Found at i:35084472 original size:54 final size:53
Alignment explanation
Indices: 35084414--35084717 Score: 299
Period size: 54 Copynumber: 5.6 Consensus size: 53
35084404 TTCCAGTCAC
35084414 TTTACCCTTCGGGGCTATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCAT
1 TTTACCCTTCGGGG-TATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCAT
* * *
35084468 TTTACCCTTCGGGGGTAATTCGATCATTTTACCCATC-GCGGGTATTTCA-ATCAT
1 TTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTCAG-GGGTATTT-AGATCAT
* * * * * *
35084522 TTTACCCTTCAGGAGTATTTCGGTTATTTTATCCATCAAGGTTATTTCAG-TCAT
1 TTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTT-AGATCAT
* * * * * *
35084576 TTTACCCATCGGGGGTATCTCGGTCATTTTACCCTTCGGGGGTAATTCGACCAT
1 TTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCAT
* ** * * *
35084630 TTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTAATTCGGTCAT
1 TTTACCCTTCG-GGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCAT
* *
35084684 TTTACACTTCCGGGGTATATCGGTCATTTTACCC
1 TTTACCCTT-CGGGGTATTTCGGTCATTTTACCC
35084718 ACGAATCGCA
Statistics
Matches: 209, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
53 3 0.01
54 199 0.95
55 7 0.03
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (53 bp):
TTTACCCTTCGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCAT
Found at i:35084499 original size:81 final size:81
Alignment explanation
Indices: 35084414--35084717 Score: 358
Period size: 81 Copynumber: 3.8 Consensus size: 81
35084404 TTCCAGTCAC
* * *
35084414 TTTACCCTTCGGGGCTATTTCGGTCATTTTACCCTTCAGGGGTATTTAGATCATTTTACCCTTCG
1 TTTACCCATCGGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCG
* *
35084479 GGGGTAATTCGATCAT
66 AGGGTATTTCGATCAT
* ** * * * * * *
35084495 TTTACCCATCGCGGGTATTTCAATCATTTTACCCTTCAGGAGTATTTCGGTTATTTTATCCATCA
1 TTTACCCATCGGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCG
*
35084560 AGGTTATTTC-AGTCAT
66 AGGGTATTTCGA-TCAT
* * * *
35084576 TTTACCCATCGGGGGTATCTCGGTCATTTTACCCTTCGGGGGTAATTCGACCATTTTACCCTTCG
1 TTTACCCATCGGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCG
35084641 AGGGTATTTCGATCAT
66 AGGGTATTTCGATCAT
* * * * * * *
35084657 TTTACCCTTTGGGGGTAATTCGGTCATTTTACACTTCCGGGGTATATCGGTCATTTTACCC
1 TTTACCCATCGGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCC
35084718 ACGAATCGCA
Statistics
Matches: 182, Mismatches: 39, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 1 0.01
81 180 0.99
82 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (81 bp):
TTTACCCATCGGGGGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCCTTCG
AGGGTATTTCGATCAT
Found at i:35089873 original size:25 final size:25
Alignment explanation
Indices: 35089811--35089876 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
35089801 AATAACGGGT
* * *
35089811 AGCTCCAGAGAGTCATTTATCAGGA
1 AGCTCTAGAGAGCCATATATCAGGA
*
35089836 AGCTCGT-GCGAGCCATATATC-GAGA
1 AGCTC-TAGAGAGCCATATATCAG-GA
35089861 AGCTCTAGAGAGCCAT
1 AGCTCTAGAGAGCCAT
35089877 TAGTTGGGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
24 2 0.06
25 31 0.94
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (25 bp):
AGCTCTAGAGAGCCATATATCAGGA
Found at i:35089972 original size:24 final size:24
Alignment explanation
Indices: 35089940--35089990 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
35089930 TATCGGGTAA
**
35089940 CTCAAGAGAGCAAATATTGGGATG
1 CTCAAGAGAGCAAATAGCGGGATG
* *
35089964 CTCATGAGAGCTAATAGCGGGATG
1 CTCAAGAGAGCAAATAGCGGGATG
35089988 CTC
1 CTC
35089991 TTACGAGCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (24 bp):
CTCAAGAGAGCAAATAGCGGGATG
Found at i:35104252 original size:248 final size:248
Alignment explanation
Indices: 35103813--35104310 Score: 960
Period size: 248 Copynumber: 2.0 Consensus size: 248
35103803 CTTTCAGATG
*
35103813 TACTAAAGACCTGTCAGCCAACTGTAATGTTGTTTGAGTAGTTCTAAGATCCCCTAGCTCGAGTT
1 TACTAAAGACCTGTCAGCCAACTGTAATGTTATTTGAGTAGTTCTAAGATCCCCTAGCTCGAGTT
35103878 TTTCAAAAATTGATAGAGGCATTAAATTAATACTAGCTACTAAATCACATAGAGGTCTATTTAAA
66 TTTCAAAAATTGATAGAGGCATTAAATTAATACTAGCTACTAAATCACATAGAGGTCTATTTAAA
35103943 TAGATGTTTTCTATATCTATGGGAATAGTAAAGCTCCTCGGGTCTTTCAGTTTTCGAGGTACCTG
131 TAGATGTTTTCTATATCTATGGGAATAGTAAAGCTCCTCGGGTCTTTCAGTTTTCGAGGTACCTG
*
35104008 TCTCGAAATAATCACATTACAAGAAGCACTTGAGTTAACTTTTTTGCCTACCT
196 TCTCGAAATAATCACATTACAAAAAGCACTTGAGTTAACTTTTTTGCCTACCT
35104061 TACTAAAGACCTGTCAGCCAACTGTAATGTTATTTGAGTAGTTCTAAGATCCCCTAGCTCGAGTT
1 TACTAAAGACCTGTCAGCCAACTGTAATGTTATTTGAGTAGTTCTAAGATCCCCTAGCTCGAGTT
35104126 TTTCAAAAATTGATAGAGGCATTAAATTAATACTAGCTACTAAATCACATAGAGGTCTATTTAAA
66 TTTCAAAAATTGATAGAGGCATTAAATTAATACTAGCTACTAAATCACATAGAGGTCTATTTAAA
* *
35104191 TAGATGTTTTCTATATCTATGGGAATAGTAAAGCTCCTCGGGTCTTTCAGTTTTTGAGGTACGTG
131 TAGATGTTTTCTATATCTATGGGAATAGTAAAGCTCCTCGGGTCTTTCAGTTTTCGAGGTACCTG
35104256 TCTCGAAATAATCACATTACAAAAAGCACTTGAGTTAACTTTTTTGCCTACCT
196 TCTCGAAATAATCACATTACAAAAAGCACTTGAGTTAACTTTTTTGCCTACCT
35104309 TA
1 TA
35104311 ATATTCTTAC
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
248 246 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (248 bp):
TACTAAAGACCTGTCAGCCAACTGTAATGTTATTTGAGTAGTTCTAAGATCCCCTAGCTCGAGTT
TTTCAAAAATTGATAGAGGCATTAAATTAATACTAGCTACTAAATCACATAGAGGTCTATTTAAA
TAGATGTTTTCTATATCTATGGGAATAGTAAAGCTCCTCGGGTCTTTCAGTTTTCGAGGTACCTG
TCTCGAAATAATCACATTACAAAAAGCACTTGAGTTAACTTTTTTGCCTACCT
Found at i:35106060 original size:36 final size:36
Alignment explanation
Indices: 35106013--35106083 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
35106003 TATATCTGTG
35106013 GTTGCTACAATAGGTGTACCCCTACTGCAAGTCATT
1 GTTGCTACAATAGGTGTACCCCTACTGCAAGTCATT
35106049 GTTGCTACAATAGGTGTACCCCTACTGCAAGTCAT
1 GTTGCTACAATAGGTGTACCCCTACTGCAAGTCAT
35106084 ACACTAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (36 bp):
GTTGCTACAATAGGTGTACCCCTACTGCAAGTCATT
Found at i:35106492 original size:10 final size:10
Alignment explanation
Indices: 35106479--35106509 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
35106469 TTTTTAGAAT
35106479 AATAACATAA
1 AATAACATAA
35106489 AATAACATAA
1 AATAACATAA
*
35106499 AATAAAATAA
1 AATAACATAA
35106509 A
1 A
35106510 TAAAATTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (10 bp):
AATAACATAA
Found at i:35106503 original size:15 final size:14
Alignment explanation
Indices: 35106479--35106515 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
35106469 TTTTTAGAAT
*
35106479 AATAACATAAAATA
1 AATAAAATAAAATA
35106493 ACATAAAATAAAATA
1 A-ATAAAATAAAATA
35106508 AATAAAAT
1 AATAAAAT
35106516 TTAGGAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAAATAAAATA
Found at i:35108627 original size:29 final size:30
Alignment explanation
Indices: 35108588--35108671 Score: 91
Period size: 29 Copynumber: 2.8 Consensus size: 30
35108578 CACTTACTTG
*
35108588 ATCAATAGATAGCCACAAAGGCATCC--AC
1 ATCATTAGATAGCCACAAAGGCATCCATAC
* * * *
35108616 TTGACTTAGATAGCCACAGAGGCATTCATAC
1 ATCA-TTAGATAGCCACAAAGGCATCCATAC
*
35108647 ATCATTAGATAGCCACGAAGGCATC
1 ATCATTAGATAGCCACAAAGGCATC
35108672 TAAATACACA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 2 0.05
29 19 0.44
30 18 0.42
31 4 0.09
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCATTAGATAGCCACAAAGGCATCCATAC
Found at i:35108832 original size:61 final size:61
Alignment explanation
Indices: 35108730--35108881 Score: 164
Period size: 61 Copynumber: 2.5 Consensus size: 61
35108720 GCCACAAAGA
* * * * * * *
35108730 CTCAC-TGTAATAGAGAATAGCCACAAAGGCTTCCGCATATAATAGGTTCAGCC-CTTAGGG
1 CTCACATGTAACAGAGAACATCCACAAAGGCTTCCACATATAACAGATCCAGCCAC-TAGGG
* * * *
35108790 CTCACATGTAACAGAGAACATCCACAAAGGCTTTCACGTATAACATATCCAGCCACTATGG
1 CTCACATGTAACAGAGAACATCCACAAAGGCTTCCACATATAACAGATCCAGCCACTAGGG
* *
35108851 CTCACATTTAACATAGAACATCCACAAAGGC
1 CTCACATGTAACAGAGAACATCCACAAAGGC
35108882 ATCACTTTTA
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
60 5 0.06
61 71 0.92
62 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (61 bp):
CTCACATGTAACAGAGAACATCCACAAAGGCTTCCACATATAACAGATCCAGCCACTAGGG
Found at i:35113740 original size:36 final size:32
Alignment explanation
Indices: 35113704--35113768 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
35113694 GATGGTTCTA
*
35113704 TCTATCACTTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
35113736 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
35113768 T
1 T
35113769 GAGGCCGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (32 bp):
TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
Found at i:35115298 original size:18 final size:18
Alignment explanation
Indices: 35115275--35115310 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
35115265 TGCCAGATAC
**
35115275 GTATCCTAGTCCTTATAT
1 GTATCCTAACCCTTATAT
35115293 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
35115311 ATTTTCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:35115802 original size:62 final size:60
Alignment explanation
Indices: 35115688--35115802 Score: 149
Period size: 62 Copynumber: 1.9 Consensus size: 60
35115678 TGTACAAAAT
* ****
35115688 TTTTTATATTGTTTCATTTAATAAAATAGAAGTTGTTTTGAATATTTTAATAGTCAATTA
1 TTTTTATATTGTTTCATTTAATAAAATAGAAGTTCTTTTGAATAAAGCAATAGTCAATTA
* *
35115748 TTTTTATATTTTTTCCTATTTATTAAAATAGAAGTTCTTTTGAATAAAGCAATAG
1 TTTTTATATTGTTT-C-ATTTAATAAAATAGAAGTTCTTTTGAATAAAGCAATAG
35115803 AAATAATGCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
60 13 0.28
61 1 0.02
62 32 0.70
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (60 bp):
TTTTTATATTGTTTCATTTAATAAAATAGAAGTTCTTTTGAATAAAGCAATAGTCAATTA
Found at i:35119088 original size:126 final size:125
Alignment explanation
Indices: 35118842--35119224 Score: 502
Period size: 125 Copynumber: 3.1 Consensus size: 125
35118832 GCCAAGCAGG
* * *
35118842 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTACTTTTGCTGATAGTGCATCT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTACTTTTGCTGACAGTGCATCC
* * * * *
35118907 TGCTTGAAACGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAACTATTTTTTCAGA
65 TACTTGAAGCGTTTTTGACACTATATTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAGA
* *** *
35118968 AACTATTGTAGAAAAAGAGCGTCTTTGTGGGAGCTTTTTCAGTACTTTTGCTAACAGTGCATCCT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAGTACTTTTGCTGACAGTGCATCCT
*
35119033 ACATT-AAGCGTTTTT-ACACTATATTTTCAGAACCGTCTTCTTAAAATTATTTTTTTAGA
66 AC-TTGAAGCGTTTTTGACACTATATTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAGA
* * * * *
35119092 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAGTTTTTTTTAGTACTCTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-CTTTTTCAGTACTTTTGCTGACAGTGCATCC
* * * * *
35119157 TACTTGAAGCATTTTTGACACTATATTTTTAGAATCATCTTCTCAAACTTA-TTTTTTAGA
65 TACTTGAAGCGTTTTTGACACTATATTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAGA
35119217 AACTACTG
1 AACTACTG
35119225 AACAAAAAAA
Statistics
Matches: 223, Mismatches: 30, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
124 69 0.31
125 94 0.42
126 60 0.27
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (125 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAGTACTTTTGCTGACAGTGCATCCT
ACTTGAAGCGTTTTTGACACTATATTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAGA
Found at i:35119450 original size:14 final size:15
Alignment explanation
Indices: 35119431--35119471 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
35119421 ATTTATTTTA
35119431 ATAAAACCCTAAC-C
1 ATAAAACCCTAACTC
35119445 ATAAAACCCTAAACTC
1 ATAAAACCCT-AACTC
35119461 AT-AAACCCTAA
1 ATAAAACCCTAA
35119472 GCACTAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 12 0.48
15 10 0.40
16 3 0.12
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (15 bp):
ATAAAACCCTAACTC
Found at i:35119468 original size:15 final size:15
Alignment explanation
Indices: 35119431--35119471 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
35119421 ATTTATTTTA
35119431 ATAAAACCCT-AACC
1 ATAAAACCCTAAACC
35119445 ATAAAACCCTAAACTC
1 ATAAAACCCTAAAC-C
35119461 AT-AAACCCTAA
1 ATAAAACCCTAA
35119472 GCACTAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.40
15 12 0.48
16 3 0.12
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (15 bp):
ATAAAACCCTAAACC
Found at i:35119890 original size:17 final size:18
Alignment explanation
Indices: 35119868--35119901 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35119858 GGATATAATA
35119868 AAATA-TTCAAAAAAGAT
1 AAATATTTCAAAAAAGAT
*
35119885 AAATATTTTAAAAAAGA
1 AAATATTTCAAAAAAGA
35119902 CTCATGACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATATTTCAAAAAAGAT
Found at i:35125246 original size:10 final size:10
Alignment explanation
Indices: 35125231--35125271 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
35125221 TGGGACTAAA
*
35125231 TTAGAAATAT
1 TTAGAAAAAT
35125241 TTAG-AAAAT
1 TTAGAAAAAT
35125250 TTAGGAAAAAT
1 TTA-GAAAAAT
35125261 TT-GAAAAAT
1 TTAGAAAAAT
35125270 TT
1 TT
35125272 GGGCTGTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 16 0.57
10 5 0.18
11 7 0.25
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (10 bp):
TTAGAAAAAT
Found at i:35133437 original size:35 final size:35
Alignment explanation
Indices: 35133389--35133464 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
35133379 GCCCAACCAT
* *
35133389 AACAAGTCGATGCTCATAAGAGCTAATCCAACAGA
1 AACACGTCAATGCTCATAAGAGCTAATCCAACAGA
* *
35133424 AACACGTCAATGCTCATAAGAGCTAGTCCAACCGA
1 AACACGTCAATGCTCATAAGAGCTAATCCAACAGA
35133459 AACACG
1 AACACG
35133465 CCAAACATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (35 bp):
AACACGTCAATGCTCATAAGAGCTAATCCAACAGA
Found at i:35139228 original size:21 final size:21
Alignment explanation
Indices: 35139202--35139282 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 21
35139192 TGGATGGATC
35139202 AGCTCTTACAAGCTTCTGTTA
1 AGCTCTTACAAGCTTCTGTTA
** * *
35139223 AGCTCTTATGAGCTTTTGTTC
1 AGCTCTTACAAGCTTCTGTTA
* *
35139244 AGCTCTTACAAGCTTTTGTTT
1 AGCTCTTACAAGCTTCTGTTA
*
35139265 AGC-CTT-CGAGCTTCTGTT
1 AGCTCTTACAAGCTTCTGTT
35139283 GACTTATTCG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
19 10 0.20
20 3 0.06
21 38 0.75
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.43
Consensus pattern (21 bp):
AGCTCTTACAAGCTTCTGTTA
Found at i:35139871 original size:13 final size:13
Alignment explanation
Indices: 35139849--35139879 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
35139839 AGTGAACTTT
*
35139849 GGTAACTTAATTA
1 GGTAAATTAATTA
35139862 GGTAAATTAATTA
1 GGTAAATTAATTA
35139875 GGTAA
1 GGTAA
35139880 GTTTGGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (13 bp):
GGTAAATTAATTA
Found at i:35148134 original size:9 final size:9
Alignment explanation
Indices: 35148117--35148153 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
35148107 TGAGTTTTCG
35148117 AATTCGAAT
1 AATTCGAAT
*
35148126 AACTCGAAT
1 AATTCGAAT
35148135 AATTCGAAT
1 AATTCGAAT
35148144 AATTCGAAT
1 AATTCGAAT
35148153 A
1 A
35148154 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:35149168 original size:15 final size:15
Alignment explanation
Indices: 35149148--35149179 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
35149138 GAAAACTCGA
35149148 TTAACTCGAAAATTT
1 TTAACTCGAAAATTT
*
35149163 TTAACTTGAAAATTT
1 TTAACTCGAAAATTT
35149178 TT
1 TT
35149180 GATTCGATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (15 bp):
TTAACTCGAAAATTT
Found at i:35150612 original size:16 final size:16
Alignment explanation
Indices: 35150591--35150626 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
35150581 TGGTTCGTTA
35150591 TAATGGAATAGAGGCG
1 TAATGGAATAGAGGCG
*
35150607 TAATGGATTAGAGGCG
1 TAATGGAATAGAGGCG
35150623 TAAT
1 TAAT
35150627 AGCAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.33, T:0.25
Consensus pattern (16 bp):
TAATGGAATAGAGGCG
Found at i:35150670 original size:45 final size:45
Alignment explanation
Indices: 35150606--35150745 Score: 212
Period size: 45 Copynumber: 3.1 Consensus size: 45
35150596 GAATAGAGGC
*
35150606 GTAATGGATTAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
*
35150651 GTAATGGAATAGAGGCGTAATAGCAATTCAATTATTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
* *
35150696 GTAATGGAATAGAGGCGTAATAG-TATTC-TTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAAT
*
35150740 GGAATG
1 GTAATG
35150746 AAGGTGTAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
43 1 0.01
44 21 0.24
45 66 0.75
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.35
Consensus pattern (45 bp):
GTAATGGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
Found at i:35150925 original size:18 final size:17
Alignment explanation
Indices: 35150904--35150938 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
35150894 TTATTATTAA
*
35150904 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
35150922 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
35150939 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:35150985 original size:61 final size:61
Alignment explanation
Indices: 35150919--35151109 Score: 194
Period size: 61 Copynumber: 3.2 Consensus size: 61
35150909 TTTTAATTAA
*
35150919 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTAATAAAATCAT
* * * * * * * ** * *
35150980 AATATATGATACT-ATAAAATATATT-TTAA-C-ATAATTATTAT-TAAATATAATTTAATAAA
1 AATATATAAT-TTAATAAAAT-TCTTAATAATCAAT-ATTCTTATATGAATTTAATAAAATCAT
* *
35151039 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTAATAAAATCAT
35151100 AATATATAAT
1 AATATATAAT
35151110 ACTATATAAT
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 4 0.04
59 31 0.32
60 15 0.15
61 43 0.44
62 4 0.04
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTAATAAAATCAT
Found at i:35151095 original size:120 final size:120
Alignment explanation
Indices: 35150880--35151122 Score: 423
Period size: 120 Copynumber: 2.0 Consensus size: 120
35150870 TAATTTAATC
* *
35150880 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA
1 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
* * *
35150945 TAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
66 TAATAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAAT
35151000 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
1 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
* *
35151065 TATTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAAT
66 TAATAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAAT
35151120 ATA
1 ATA
35151123 GATTAATAAT
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 116 1.00
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (120 bp):
ATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
TAATAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAAT
Found at i:35152603 original size:25 final size:25
Alignment explanation
Indices: 35152563--35152614 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
35152553 AAGAATCAGT
*
35152563 AAACTTAAACATACGGGAC-GTGTGA
1 AAACTTAAACAGACGGGACTG-GTGA
*
35152588 AAACTTAAATAGACGGGACTGGTGA
1 AAACTTAAACAGACGGGACTGGTGA
35152613 AA
1 AA
35152615 TATAAATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.19
Consensus pattern (25 bp):
AAACTTAAACAGACGGGACTGGTGA
Found at i:35173903 original size:13 final size:13
Alignment explanation
Indices: 35173854--35173904 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
35173844 AGTTCTTCAT
35173854 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
35173867 TAG-TTTTGAAAAG
1 T-GCTTTTGAAAAG
* *
35173880 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
35173893 TGCTTTTGAAAA
1 TGCTTTTGAAAA
35173905 ATTTGAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 1 0.03
13 30 0.94
14 1 0.03
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:35176869 original size:17 final size:17
Alignment explanation
Indices: 35176847--35176879 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
35176837 CCCAACAAAA
*
35176847 AAAATCAATCCTAGACG
1 AAAATCAATCCCAGACG
35176864 AAAATCAATCCCAGAC
1 AAAATCAATCCCAGAC
35176880 AAACAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.27, G:0.09, T:0.15
Consensus pattern (17 bp):
AAAATCAATCCCAGACG
Found at i:35177128 original size:17 final size:18
Alignment explanation
Indices: 35177106--35177139 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
35177096 TTCTTCATTG
35177106 CTTTTCAAAG-AAAAGCA
1 CTTTTCAAAGTAAAAGCA
*
35177123 CTTTTCCAAGTAAAAGC
1 CTTTTCAAAGTAAAAGC
35177140 CCATCTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (18 bp):
CTTTTCAAAGTAAAAGCA
Found at i:35179867 original size:30 final size:31
Alignment explanation
Indices: 35179806--35179874 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
35179796 GAAGAGAGGA
*
35179806 AGAAGAAAAACAACAATTGTGATAAATAAAG
1 AGAAGAAAAACAACAATCGTGATAAATAAAG
* *
35179837 AGAAGAAAAAGAA-AGTCGTGATACAA-AAAG
1 AGAAGAAAAACAACAATCGTGATA-AATAAAG
35179867 AGAAGAAA
1 AGAAGAAA
35179875 TAAAAAACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 20 0.59
31 14 0.41
ACGTcount: A:0.62, C:0.06, G:0.20, T:0.12
Consensus pattern (31 bp):
AGAAGAAAAACAACAATCGTGATAAATAAAG
Found at i:35198027 original size:42 final size:42
Alignment explanation
Indices: 35197968--35198051 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
35197958 AATCCTACTT
*
35197968 GGGAAAATAATTTCCTTATTTTAATAAACTACTAAAACATAA
1 GGGAAAATAATTTCCTTATTCTAATAAACTACTAAAACATAA
*
35198010 GGGAAAATAATTTCCTTATTCTAATAAACTACTAAAAGATAA
1 GGGAAAATAATTTCCTTATTCTAATAAACTACTAAAACATAA
35198052 AATAAAATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (42 bp):
GGGAAAATAATTTCCTTATTCTAATAAACTACTAAAACATAA
Found at i:35198104 original size:19 final size:18
Alignment explanation
Indices: 35198082--35198121 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
35198072 TGAATAAAAC
*
35198082 TTATCTACCTATATAAGAT
1 TTATCTACCTAAATAA-AT
*
35198101 TTATTTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
35198119 TTA
1 TTA
35198122 AAATATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:35200238 original size:104 final size:104
Alignment explanation
Indices: 35200121--35200319 Score: 371
Period size: 104 Copynumber: 1.9 Consensus size: 104
35200111 TTGATTAAAT
*
35200121 TTTTTTTGGATTACCTGGTGATCAGGGTCAGTTAATGTCAATTAACTATCATAGTTTCGATAATC
1 TTTTTTTGGATTACCTGGTGATCAGGGTCAGTTAATGTCAATCAACTATCATAGTTTCGATAATC
*
35200186 AAAGTGGTTCTGAAAGTAAAAACTATTTTGATTAATTTC
66 AAAGTGGTTCTAAAAGTAAAAACTATTTTGATTAATTTC
35200225 TTTTTTTGGATTACCTGGTGATCAGGGTCAGTTAATGTCAATCAACTATCATAGTTTCGATAATC
1 TTTTTTTGGATTACCTGGTGATCAGGGTCAGTTAATGTCAATCAACTATCATAGTTTCGATAATC
*
35200290 AAAGTGGTTCTAAAAGTCAAAACTATTTTG
66 AAAGTGGTTCTAAAAGTAAAAACTATTTTG
35200320 GTACGTTGCC
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 92 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.39
Consensus pattern (104 bp):
TTTTTTTGGATTACCTGGTGATCAGGGTCAGTTAATGTCAATCAACTATCATAGTTTCGATAATC
AAAGTGGTTCTAAAAGTAAAAACTATTTTGATTAATTTC
Found at i:35210051 original size:34 final size:34
Alignment explanation
Indices: 35210012--35210150 Score: 145
Period size: 34 Copynumber: 4.1 Consensus size: 34
35210002 TAACAACTTG
*
35210012 ATACGGTAGCAAATAATATGCTTATAATGAATCA
1 ATACGGTAGCAAATAATATGCTTATAACGAATCA
* * *
35210046 TTACGGT-GACAATTAATATGCTTATAACAAATCA
1 ATACGGTAG-CAAATAATATGCTTATAACGAATCA
** *
35210080 ATACAATAGCAAATAATATGCTTATAACGGATCA
1 ATACGGTAGCAAATAATATGCTTATAACGAATCA
* * ** * *
35210114 ATGCGGTAGCAATTAATATATTTATAACAAATAA
1 ATACGGTAGCAAATAATATGCTTATAACGAATCA
35210148 ATA
1 ATA
35210151 GAATAGCAAA
Statistics
Matches: 83, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
33 1 0.01
34 81 0.98
35 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (34 bp):
ATACGGTAGCAAATAATATGCTTATAACGAATCA
Found at i:35210070 original size:68 final size:68
Alignment explanation
Indices: 35209961--35210160 Score: 206
Period size: 68 Copynumber: 2.9 Consensus size: 68
35209951 GCAATATGAC
* * * * * * ** **
35209961 ATGCTTATAA-TAGATCAATATGGTAGTAATTAATTTCCTTATAACAACTTGATACGGTAGCAAA
1 ATGCTTATAACGA-ATCAATACGGTAGCAATTAATATACTTATAACAAATCAATACAATAGCAAA
35210025 TAAT
65 TAAT
* * *
35210029 ATGCTTATAATGAATCATTACGGT-GACAATTAATATGCTTATAACAAATCAATACAATAGCAAA
1 ATGCTTATAACGAATCAATACGGTAG-CAATTAATATACTTATAACAAATCAATACAATAGCAAA
35210093 TAAT
65 TAAT
* * * * *
35210097 ATGCTTATAACGGATCAATGCGGTAGCAATTAATATATTTATAACAAATAAATAGAATAGCAAA
1 ATGCTTATAACGAATCAATACGGTAGCAATTAATATACTTATAACAAATCAATACAATAGCAAA
35210161 AGACATGCTT
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
67 1 0.01
68 107 0.97
69 2 0.02
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (68 bp):
ATGCTTATAACGAATCAATACGGTAGCAATTAATATACTTATAACAAATCAATACAATAGCAAAT
AAT
Found at i:35214038 original size:21 final size:22
Alignment explanation
Indices: 35214013--35214063 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
35214003 GTTGTTGAGA
*
35214013 AGGAAGTTGTTGCTGCAGAAG-
1 AGGAAGTTGTTGCTGAAGAAGT
35214034 AGGAAGTTGTTGCTGAAGAAGT
1 AGGAAGTTGTTGCTGAAGAAGT
35214056 A-GAAGTTG
1 AGGAAGTTG
35214064 CTGAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.31, C:0.06, G:0.37, T:0.25
Consensus pattern (22 bp):
AGGAAGTTGTTGCTGAAGAAGT
Found at i:35214387 original size:14 final size:15
Alignment explanation
Indices: 35214368--35214399 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
35214358 GATAAAAAAT
35214368 AAAAAGAGG-AGAAG
1 AAAAAGAGGAAGAAG
35214382 AAAAAGAGGAAGAAG
1 AAAAAGAGGAAGAAG
35214397 AAA
1 AAA
35214400 CATCGTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAAAGAGGAAGAAG
Found at i:35215097 original size:9 final size:9
Alignment explanation
Indices: 35215083--35215108 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
35215073 TTATTCTAAA
35215083 AATATATAT
1 AATATATAT
35215092 AATATATAT
1 AATATATAT
35215101 AATATATA
1 AATATATA
35215109 AACACTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATATATAT
Found at i:35218921 original size:27 final size:27
Alignment explanation
Indices: 35218890--35219067 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35218880 TAAATTGTAC
35218890 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35218917 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35218943 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35218971 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35218999 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35219026 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35219053 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35219068 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35219004 original size:82 final size:81
Alignment explanation
Indices: 35218891--35219046 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35218881 AAATTGTACA
* *
35218891 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35218955 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35218972 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35219037 TGCGAGTTGA
65 TGCGAATTGA
35219047 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35219058 original size:82 final size:81
Alignment explanation
Indices: 35218887--35219067 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35218877 GATTAAATTG
* *
35218887 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35218952 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35218968 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35219032 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35219050 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35219068 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35226984 original size:27 final size:27
Alignment explanation
Indices: 35226953--35227130 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35226943 TAAATTGTAC
35226953 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35226980 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35227006 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35227034 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35227062 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35227089 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35227116 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35227131 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35227067 original size:82 final size:81
Alignment explanation
Indices: 35226954--35227109 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35226944 AAATTGTACA
* *
35226954 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35227018 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35227035 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35227100 TGCGAGTTGA
65 TGCGAATTGA
35227110 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35227121 original size:82 final size:81
Alignment explanation
Indices: 35226950--35227130 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35226940 GATTAAATTG
* *
35226950 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35227015 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35227031 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35227095 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35227113 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35227131 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35232449 original size:38 final size:37
Alignment explanation
Indices: 35232397--35232474 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 37
35232387 ACGTAACGTC
35232397 ATTCGGGCTCTGTGCCTAGCAAGCTTTATGCCGGTGAT
1 ATTCGGGCTCTGTGCCTAGCAAGCTTTATGCCGGTG-T
* *
35232435 ATTCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGT
1 ATTCGGGCTCTGTGCCTAGCAAGCTTTATGCCGGTGT
35232472 ATT
1 ATT
35232475 GAAAGTTAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 4 0.11
38 34 0.89
ACGTcount: A:0.14, C:0.22, G:0.29, T:0.35
Consensus pattern (37 bp):
ATTCGGGCTCTGTGCCTAGCAAGCTTTATGCCGGTGT
Found at i:35235683 original size:43 final size:43
Alignment explanation
Indices: 35235631--35235728 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
35235621 ATAGGTTATA
* *
35235631 CTTCGGTATATCCGATGATGCACTGTATGTGTTAGTATATTTC
1 CTTCGGTATATCCGATGATGCACTATATGTGCTAGTATATTTC
* * *
35235674 CTTTGGTATATCCGATGATGCACTATGTGTGCTAGTATATTTG
1 CTTCGGTATATCCGATGATGCACTATATGTGCTAGTATATTTC
35235717 CTTCGGTATATC
1 CTTCGGTATATC
35235729 TTATTTTCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (43 bp):
CTTCGGTATATCCGATGATGCACTATATGTGCTAGTATATTTC
Found at i:35235852 original size:43 final size:43
Alignment explanation
Indices: 35235730--35235889 Score: 216
Period size: 43 Copynumber: 3.7 Consensus size: 43
35235720 CGGTATATCT
** *
35235730 TATTTTCTTTGGTTTATCC-AGTGATGCACTGTGTGTGCCAGTA
1 TATTTTCTTCAGTTTATCCGA-TGATGCACTGTGTGTGCCAATA
* *
35235773 TAGTATCTTCAGTTTCATCCGATGATGCACTGTGTGTGCCAATA
1 TATTTTCTTCAGTTT-ATCCGATGATGCACTGTGTGTGCCAATA
*
35235817 TATTTTCTTCAGTTTATCCGATGATGCACTATGTGTGCCAATA
1 TATTTTCTTCAGTTTATCCGATGATGCACTGTGTGTGCCAATA
*
35235860 TATTTTCTTC-GATTTATCCAATGATGCACT
1 TATTTTCTTCAG-TTTATCCGATGATGCACT
35235890 TACGTGCCAG
Statistics
Matches: 105, Mismatches: 9, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
42 1 0.01
43 65 0.62
44 38 0.36
45 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (43 bp):
TATTTTCTTCAGTTTATCCGATGATGCACTGTGTGTGCCAATA
Found at i:35237876 original size:3 final size:3
Alignment explanation
Indices: 35237863--35237911 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
35237853 GATTTAGTCC
*
35237863 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
35237911 T
1 T
35237912 GCTTCTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:35237962 original size:7 final size:6
Alignment explanation
Indices: 35237935--35237959 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
35237925 TATAGGAGTG
35237935 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
35237960 TATATACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:35238309 original size:9 final size:9
Alignment explanation
Indices: 35238295--35238328 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
35238285 ATGTACATAC
35238295 ATATTTTAT
1 ATATTTTAT
35238304 ATATTTTAT
1 ATATTTTAT
35238313 A-ATTTTCAT
1 ATATTTT-AT
35238322 ATATTTT
1 ATATTTT
35238329 CCTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.22
9 13 0.57
10 5 0.22
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (9 bp):
ATATTTTAT
Found at i:35238378 original size:12 final size:12
Alignment explanation
Indices: 35238331--35238383 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
35238321 TATATTTTCC
*
35238331 TTTATTTTTATG
1 TTTATTTATATG
* * *
35238343 TTCATTTATGTA
1 TTTATTTATATG
35238355 TTTATTTATATG
1 TTTATTTATATG
*
35238367 TTTATTTTTATG
1 TTTATTTATATG
35238379 CTTTA
1 -TTTA
35238384 GTTTGTTTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
12 28 0.88
13 4 0.12
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.68
Consensus pattern (12 bp):
TTTATTTATATG
Found at i:35238891 original size:108 final size:108
Alignment explanation
Indices: 35238515--35238942 Score: 549
Period size: 109 Copynumber: 3.9 Consensus size: 108
35238505 AAAAAAGAAG
**
35238515 AAAATATTTCAAAATAAGTTAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* *
35238580 AGTTTCGATTTCTCGTTCGACCAAATAGCTAAATAT-TCTTTTA
65 GGTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
* * **
35238623 AAAACTTTTTAAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAATTTGCCCTAAGGTACT
1 AAAA--TTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
* * * *
35238688 GGATTTCGATTTCTCGTTCCACCAAAT-GACTTAATATCCTTTTTCA
64 GGGTTTCGATTTCTCGTTCGACCAAATAG-CTAAATAT-CTTTTTTA
* *
35238734 ACAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTATTGG
1 AAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
35238799 GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
** * * * *
35238842 TTAA-TTTCAAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAACGTGCCCTAAGGTGCTG
1 AAAATTTTC-AAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* * *
35238906 GGTTTCGATTTCACGTT-TAGCCAAATTGCTAAATATC
65 GGTTTCGATTTCTCGTTCGA-CCAAATAGCTAAATATC
35238943 CTCTTGAATT
Statistics
Matches: 279, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
107 5 0.02
108 95 0.34
109 169 0.61
110 2 0.01
111 8 0.03
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (108 bp):
AAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
Found at i:35242039 original size:9 final size:9
Alignment explanation
Indices: 35242027--35242069 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
35242017 AAAAATTTTC
35242027 AAAAAATCA
1 AAAAAATCA
35242036 AAAAAATCA
1 AAAAAATCA
*
35242045 AAAAAATAAA
1 AAAAAAT-CA
*
35242055 AAAAAAACA
1 AAAAAATCA
35242064 AAAAAA
1 AAAAAA
35242070 AATCAAAGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.86, C:0.07, G:0.00, T:0.07
Consensus pattern (9 bp):
AAAAAATCA
Found at i:35244236 original size:88 final size:87
Alignment explanation
Indices: 35244087--35244708 Score: 958
Period size: 88 Copynumber: 7.1 Consensus size: 87
35244077 AACAGATCAG
* * * *
35244087 TGAAGACAACAGATCTTGGCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTT-GCCTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
35244152 CTCTCGGTTGTGATGGAGCTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
*
35244175 TGAAGACAAAAGATCTTGCCTACCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCT-CCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
35244240 CTCTCGGTTGTGATGGAGCTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
*
35244263 TGAAGACAAAAGATCTTGCGCTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGC-CTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
35244328 CTCTCGGTTGTGATGGAGCTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
* *
35244351 TGAAGACAAAAGATCTTGCGCTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGC-CTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
35244416 CTCTCGGTTGTGATGGAGCTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
* *
35244439 TGAAGACAAAAGATCTTGCGCTCCTGGATTGACAGGGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGC-CTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
35244504 CTCTCGGGTGTGATGGAGCTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
* * * *
35244527 TGAAGAAAAAAGATCTTGCTTTCCTGCATTGACAGCGAAGCAGGTCGAAAAGACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGC-CTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
35244592 CTCTCGGTTGTGGTAGAGTTGGT
65 CTCTCGGTTGTGATGGAGCTGGT
* ** *
35244615 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAATGAAGCAAGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCC-TCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
35244680 CTCTCGGTTGT-AGCGGAGCTGGT
65 CTCTCGGTTGTGA-TGGAGCTGGT
35244703 TGAAGA
1 TGAAGA
35244709 AACCAGTCTT
Statistics
Matches: 497, Mismatches: 33, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
87 3 0.01
88 492 0.99
89 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (87 bp):
TGAAGACAAAAGATCTTGCCTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTC
TCTCGGTTGTGATGGAGCTGGT
Found at i:35244798 original size:45 final size:45
Alignment explanation
Indices: 35244717--35244831 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 45
35244707 GAAACCAGTC
* *
35244717 TTGCCTTCTTGTACTGAAAGTGGAGCAAACTAAAGATAGCAGAGT
1 TTGCCTTCCTGTACTGACAGTGGAGCAAACTAAAGATAGCAGAGT
* * * * *
35244762 TTGCCTTCCTGTACTGACAGCGGAGCAGA-TCGAAGATGGCAGATT
1 TTGCCTTCCTGTACTGACAGTGGAGCAAACT-AAAGATAGCAGAGT
* *
35244807 TTACCTCCCTGTGACT-ACAGTGGAG
1 TTGCCTTCCTGT-ACTGACAGTGGAG
35244832 TACATTGAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.93
46 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (45 bp):
TTGCCTTCCTGTACTGACAGTGGAGCAAACTAAAGATAGCAGAGT
Found at i:35246218 original size:3 final size:3
Alignment explanation
Indices: 35246205--35246253 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
35246195 GATTTAGTCC
*
35246205 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
35246253 T
1 T
35246254 GCTTTTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:35246571 original size:37 final size:39
Alignment explanation
Indices: 35246524--35246623 Score: 184
Period size: 39 Copynumber: 2.6 Consensus size: 39
35246514 TGAATATGCG
35246524 TACTTATATATATATTTTATATAGTAATTTTAAAATATA
1 TACTTATATATATATTTTATATAGTAATTTTAAAATATA
35246563 TACTTATATATATATTTTATATAGTAATTTTAAAATATA
1 TACTTATATATATATTTTATATAGTAATTTTAAAATATA
35246602 TACTTATATATAT-TTTATATAT
1 TACTTATATATATATTT-TATAT
35246624 TTTCATAATT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
38 3 0.05
39 57 0.95
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (39 bp):
TACTTATATATATATTTTATATAGTAATTTTAAAATATA
Found at i:35246757 original size:12 final size:12
Alignment explanation
Indices: 35246710--35246762 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
35246700 TATATTTTCC
*
35246710 TTTATTTTTATG
1 TTTATTTATATG
* * *
35246722 TTCATTTATGTA
1 TTTATTTATATG
35246734 TTTATTTATATG
1 TTTATTTATATG
*
35246746 TTTATTTTTATG
1 TTTATTTATATG
35246758 CTTTA
1 -TTTA
35246763 GTTTGTTTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
12 28 0.88
13 4 0.12
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.68
Consensus pattern (12 bp):
TTTATTTATATG
Found at i:35247271 original size:108 final size:108
Alignment explanation
Indices: 35246894--35247321 Score: 538
Period size: 109 Copynumber: 3.9 Consensus size: 108
35246884 AAAAAAGAAG
* *
35246894 AAAATATTTCAAAATAAGGTAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTAAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* *
35246959 AGTTTCGATTTCTCGTTCGACCAAATAGCTAAATAT-TCTTTTA
65 GGTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
* * **
35247002 AAAACTTTTTAAAAATAAAGCAATGTTTTGCGTTTGGAAATTCGAGGAATTTGCCCTAAGGTACT
1 AAAA--TTTTAAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
* * * **
35247067 GGATTTCGATTTCTCGTTCCACCAAAT-GACTTAATATCCTTTTTCC
64 GGGTTTCGATTTCTCGTTCGACCAAATAG-CTAAATAT-CTTTTTTA
* *
35247113 AAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTATTGG
1 AAAATTTTAAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
35247178 GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTT
66 GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
** * * * * * *
35247221 GTAATTTGAAAAATAAGGCAATGTTTTGCGTTTAGAAATTAGAGAAACGTGCCCTAAGGTGCTGG
1 AAAATTTTAAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
* * *
35247286 GTTTCGATTTCACGTT-TAGCCAAATTGCTAAATATC
66 GTTTCGATTTCTCGTTCGA-CCAAATAGCTAAATATC
35247322 CTCTTGAATT
Statistics
Matches: 276, Mismatches: 37, Indels: 14
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.00
108 97 0.35
109 168 0.61
110 2 0.01
111 8 0.03
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (108 bp):
AAAATTTTAAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCTTTTTTA
Found at i:35249453 original size:20 final size:20
Alignment explanation
Indices: 35249425--35249467 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
35249415 TGTTCACATA
* * *
35249425 CATATTTACCTAAAGTTTCG
1 CATACTTACATAAAGCTTCG
*
35249445 CATACTTACATAAGGCTTCG
1 CATACTTACATAAAGCTTCG
35249465 CAT
1 CAT
35249468 GTTAGTTCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (20 bp):
CATACTTACATAAAGCTTCG
Found at i:35257484 original size:14 final size:15
Alignment explanation
Indices: 35257462--35257538 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
35257452 CAATCAAACA
35257462 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
35257476 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
35257491 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
35257511 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
35257525 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
35257539 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:35257503 original size:20 final size:20
Alignment explanation
Indices: 35257478--35257517 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
35257468 AATATTTTCC
*
35257478 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
35257498 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
35257518 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:35257523 original size:34 final size:35
Alignment explanation
Indices: 35257466--35257532 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
35257456 CAAACACCAG
*
35257466 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
35257501 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
35257533 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:35257539 original size:14 final size:14
Alignment explanation
Indices: 35257501--35257540 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
35257491 ACAGAAAAGT
*
35257501 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
35257515 AAATCATTTTACGG
1 AAAACATTTTACAG
35257529 AAAACATTTTAC
1 AAAACATTTTAC
35257541 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:35262175 original size:13 final size:13
Alignment explanation
Indices: 35262150--35262218 Score: 84
Period size: 13 Copynumber: 5.3 Consensus size: 13
35262140 ATACATGACA
*
35262150 GGTTCGCATATAG
1 GGTTCACATATAG
*
35262163 GGTTCACACATAG
1 GGTTCACATATAG
* *
35262176 GGTTCGCATATAT
1 GGTTCACATATAG
* *
35262189 AGTTCACATATAA
1 GGTTCACATATAG
35262202 GGTTCACATATAG
1 GGTTCACATATAG
35262215 GGTT
1 GGTT
35262219 TGCGTACTAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (13 bp):
GGTTCACATATAG
Found at i:35262180 original size:26 final size:26
Alignment explanation
Indices: 35262149--35262218 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
35262139 CATACATGAC
35262149 AGGTTCGCATATAGGGTTCACACATA
1 AGGTTCGCATATAGGGTTCACACATA
* ** *
35262175 GGGTTCGCATATATAGTTCACATATA
1 AGGTTCGCATATAGGGTTCACACATA
*
35262201 AGGTTCACATATAGGGTT
1 AGGTTCGCATATAGGGTT
35262219 TGCGTACTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (26 bp):
AGGTTCGCATATAGGGTTCACACATA
Found at i:35266492 original size:47 final size:47
Alignment explanation
Indices: 35266423--35266552 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 47
35266413 AGCTGGTAAT
* * **
35266423 TCATCTACTCGACTAGTGGTTTATCCACAACGTATTCTAGTTGGCAG
1 TCATCTGCTCGACTAGTGGTTTATCCACAACATATTCTAGTCAGCAG
* * *
35266470 TCATCTGTTCGACCAGTGGTTTATCCACAACATATTTTAGTCAGCAG
1 TCATCTGCTCGACTAGTGGTTTATCCACAACATATTCTAGTCAGCAG
*
35266517 TCATCTGCTCGACTAGTGGTTCATCCACAACATATT
1 TCATCTGCTCGACTAGTGGTTTATCCACAACATATT
35266553 AGCAACTTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (47 bp):
TCATCTGCTCGACTAGTGGTTTATCCACAACATATTCTAGTCAGCAG
Found at i:35266659 original size:92 final size:91
Alignment explanation
Indices: 35266485--35266684 Score: 210
Period size: 92 Copynumber: 2.2 Consensus size: 91
35266475 TGTTCGACCA
* *
35266485 GTGGTTTATCCACAACATATTTTAGTCAGCAGTCATCTGCTCGACTAGTGGTTCATCCACAACAT
1 GTGGTTCATCCAC--CATATTTTAGTCAGCAGTCATCTGCTCGACCAGTGGTTCATCCACAACAT
* **
35266550 ATTAGCAACTTTGATCTGCACA-AATGG
64 AATAGCAACTTTGATCTGCACAGAACAG
* * *
35266577 GTGGTTCATCCACCAGTATTTTAGTCGGTAGTTCATCTGCTCGACCAGTGGTTCATTCACAACGC
1 GTGGTTCATCCACCA-TATTTTAGTCAGCAG-TCATCTGCTCGACCAGTGGTTCATCCACAA--C
* *
35266642 AATAATAGC-TC-TT-ATCTGCTCAGAACAG
62 -ATAATAGCAACTTTGATCTGCACAGAACAG
*
35266670 ATGGTTCATCCACCA
1 GTGGTTCATCCACCA
35266685 ATATATTTTA
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
90 2 0.02
91 13 0.14
92 48 0.53
93 19 0.21
94 2 0.02
95 7 0.08
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (91 bp):
GTGGTTCATCCACCATATTTTAGTCAGCAGTCATCTGCTCGACCAGTGGTTCATCCACAACATAA
TAGCAACTTTGATCTGCACAGAACAG
Found at i:35270563 original size:66 final size:65
Alignment explanation
Indices: 35270478--35270615 Score: 233
Period size: 66 Copynumber: 2.1 Consensus size: 65
35270468 ATAATAAAAA
*
35270478 TTAA-ATTGATGCAATGTGCAAAAATTAAGAATTAAAATTATCATGATGCAAATAAAAATACCAT
1 TTAACATTGATGCAATGTGCAAAAATTAAGAACTAAAATTATCATGATGCAAAT-AAAATACCAT
35270542 G
65 G
* *
35270543 TTGACATTGATGCAATGTGCAAAAATTAAGAGCTAAAATTATCATGATGCAAATAAAATACCATG
1 TTAACATTGATGCAATGTGCAAAAATTAAGAACTAAAATTATCATGATGCAAATAAAATACCATG
35270608 TTAACATT
1 TTAACATT
35270616 CCAATTATGA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 21 0.31
66 47 0.69
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (65 bp):
TTAACATTGATGCAATGTGCAAAAATTAAGAACTAAAATTATCATGATGCAAATAAAATACCATG
Found at i:35285568 original size:119 final size:119
Alignment explanation
Indices: 35285357--35285600 Score: 452
Period size: 119 Copynumber: 2.1 Consensus size: 119
35285347 ATTACTTCAG
35285357 GTTAAATCTGATCAAACAGAGGAATTATCTAATGTGATTTCGGTGATCACAGCTCAGAGGTGTGT
1 GTTAAATCTGATCAAACAGAGGAATTATCTAATGTGATTTCGGTGATCACAGCTCAGAGGTGTGT
*
35285422 CAGAAAAGGGTATGATGCTTATTTGGCATATGTGTTAGACACTAAGGTATTTGA
66 CAGAAAAGGGTATGATGCTTATTTGGCATATGAGTTAGACACTAAGGTATTTGA
* *
35285476 GTTAAATCTGATCAAACAGAGGAATTATCTAATGTGATTTTGGTGATGACAGCTCAGAGGTGTGT
1 GTTAAATCTGATCAAACAGAGGAATTATCTAATGTGATTTCGGTGATCACAGCTCAGAGGTGTGT
*
35285541 TAGAAAAGGGTATGATGCTTATTTGGCATATGAGTTAGACACTAAGGTATTTGA
66 CAGAAAAGGGTATGATGCTTATTTGGCATATGAGTTAGACACTAAGGTATTTGA
35285595 GTTAAA
1 GTTAAA
35285601 GATACAAGCA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.32
Consensus pattern (119 bp):
GTTAAATCTGATCAAACAGAGGAATTATCTAATGTGATTTCGGTGATCACAGCTCAGAGGTGTGT
CAGAAAAGGGTATGATGCTTATTTGGCATATGAGTTAGACACTAAGGTATTTGA
Found at i:35286132 original size:50 final size:50
Alignment explanation
Indices: 35286057--35286157 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
35286047 CAGAACCAAG
35286057 TATGGGCAATATGAGTTTCTGGTTATACTGTTTGGGCTGACTAATTCACC
1 TATGGGCAATATGAGTTTCTGGTTATACTGTTTGGGCTGACTAATTCACC
35286107 TATGGGCAATATGAGTTTCTGGTTATACTGTTTGGGCTGACTAATTCACC
1 TATGGGCAATATGAGTTTCTGGTTATACTGTTTGGGCTGACTAATTCACC
35286157 T
1 T
35286158 GCAGTATTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.39
Consensus pattern (50 bp):
TATGGGCAATATGAGTTTCTGGTTATACTGTTTGGGCTGACTAATTCACC
Found at i:35294795 original size:22 final size:22
Alignment explanation
Indices: 35294769--35294810 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
35294759 CCACCCTCTC
*
35294769 TATTTTGTGTATTT-TATTATAT
1 TATTTTAT-TATTTATATTATAT
35294791 TATTTTATTATTTATATTAT
1 TATTTTATTATTTATATTAT
35294811 TATTCTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (22 bp):
TATTTTATTATTTATATTATAT
Found at i:35294865 original size:6 final size:6
Alignment explanation
Indices: 35294849--35294882 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
35294839 TAATTTCTGC
35294849 ATTAG- ATTAGT ATTAGT ATTAGT ATTAGT ATTAG
1 ATTAGT ATTAGT ATTAGT ATTAGT ATTAGT ATTAG
35294883 ATTTTTAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (6 bp):
ATTAGT
Found at i:35294877 original size:18 final size:17
Alignment explanation
Indices: 35294849--35294896 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 17
35294839 TAATTTCTGC
35294849 ATTAGATTAGTATTAGT
1 ATTAGATTAGTATTAGT
35294866 ATTAGTATTAGTATTAGATT
1 ATTAG-ATTAGTATTAG--T
*
35294886 TTTAGATTAGT
1 ATTAGATTAGT
35294897 TTATTTTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 11 0.41
19 6 0.22
20 5 0.19
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (17 bp):
ATTAGATTAGTATTAGT
Found at i:35297469 original size:19 final size:19
Alignment explanation
Indices: 35297445--35297481 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
35297435 TTTTACTCTA
35297445 AAAAAATAGAAATAAAAAT
1 AAAAAATAGAAATAAAAAT
35297464 AAAAAATAGAAATAAAAA
1 AAAAAATAGAAATAAAAA
35297482 ATTTAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (19 bp):
AAAAAATAGAAATAAAAAT
Found at i:35297470 original size:13 final size:13
Alignment explanation
Indices: 35297454--35297483 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
35297444 AAAAAAATAG
35297454 AAATAAAAATAAA
1 AAATAAAAATAAA
*
35297467 AAATAGAAATAAA
1 AAATAAAAATAAA
35297480 AAAT
1 AAAT
35297484 TTAATTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (13 bp):
AAATAAAAATAAA
Found at i:35298375 original size:35 final size:35
Alignment explanation
Indices: 35298329--35298398 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
35298319 ATTTCATGAA
35298329 TTTGCACCTTCAACTACGAGAAAGTGTGTTTTTTT
1 TTTGCACCTTCAACTACGAGAAAGTGTGTTTTTTT
35298364 TTTGCACCTTCAACTACGAGAAAGTGTGTTTTTTT
1 TTTGCACCTTCAACTACGAGAAAGTGTGTTTTTTT
35298399 AGGTTTTTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (35 bp):
TTTGCACCTTCAACTACGAGAAAGTGTGTTTTTTT
Found at i:35301337 original size:153 final size:150
Alignment explanation
Indices: 35301172--35301489 Score: 385
Period size: 153 Copynumber: 2.1 Consensus size: 150
35301162 AAAATCAAAG
* *
35301172 TTTTTTTT-AAAAAATAATTACTTTTCTTAAAAATCAAA-ACCTTA-TTTCGAAATAGTTAAAAA
1 TTTTTTTTAAAAAAAT-ACTACTTTTCTTAAAAATCAAAGACCTTACTTT-AAAATAGTTAAAAA
* * *
35301234 AAATCAAAACTTTGTTTTAAAAATTTAAACTTT-CTTCTAAAATGACTTAAAAAAACATATTTTT
64 AAATCAAAACTTTGTTCTAAAAATTTAAACTTTCCTT-TAAAATAACTAAAAAAAACATATTTTT
*
35301298 ATTT-TTCAAAATCTAAGCTTTCTCCT
128 ATTTGTT-AAAATCTAAAC-TT-T-CT
* * * ** *
35301324 TTTTTTTTAAAAAAATACTATTTTTCTTAAAGATTAAAGATTTTACTTTAAAATAGTTGAAAAAA
1 TTTTTTTTAAAAAAATACTACTTTTCTTAAAAATCAAAGACCTTACTTTAAAATAGTTAAAAAAA
* * **
35301389 ATTAAAATTTTGTTCTAAAAATTTCTACTTTCCTTTAAAATAACTAAAAAAAACATATTTTTATT
66 ATCAAAACTTTGTTCTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAACATATTTTTATT
35301454 TGTTAAAATCTAAACTTTCT
131 TGTTAAAATCTAAACTTTCT
*
35301474 TTTTTTTAAAAAAAAT
1 TTTTTTTTAAAAAAAT
35301490 CAAAACTTTT
Statistics
Matches: 144, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
150 17 0.12
151 1 0.01
152 28 0.19
153 90 0.62
154 8 0.06
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (150 bp):
TTTTTTTTAAAAAAATACTACTTTTCTTAAAAATCAAAGACCTTACTTTAAAATAGTTAAAAAAA
ATCAAAACTTTGTTCTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAACATATTTTTATT
TGTTAAAATCTAAACTTTCT
Found at i:35305031 original size:16 final size:15
Alignment explanation
Indices: 35305010--35305043 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
35305000 TTGGACTGTC
*
35305010 AAAAAGGAAAGAAGAA
1 AAAAAGAAAAGAA-AA
35305026 AAAAAGAAAAGAAAA
1 AAAAAGAAAAGAAAA
35305041 AAA
1 AAA
35305044 GATCTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAA
Found at i:35305037 original size:13 final size:13
Alignment explanation
Indices: 35305021--35305045 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35305011 AAAAGGAAAG
35305021 AAGAAAAAAAGAA
1 AAGAAAAAAAGAA
35305034 AAGAAAAAAAGA
1 AAGAAAAAAAGA
35305046 TCTCAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAGAA
Done.