Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 116 of 161
Found at i:36725184 original size:25 final size:25
Alignment explanation
Indices: 36725156--36725246 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
36725146 TCATGTACAA
36725156 GTATGCTCAT-ACGAGCTGTAAATCG
1 GTATGCTC-TCACGAGCTGTAAATCG
** *
36725181 GTATGCTCAT-TTGAGCTGTAGATCG
1 GTATGCTC-TCACGAGCTGTAAATCG
* * *
36725206 GTGTGCTCTCACAAGCTATAAATCG
1 GTATGCTCTCACGAGCTGTAAATCG
36725231 GTATGCTCTCACGAGC
1 GTATGCTCTCACGAGC
36725247 GGTGGAGTAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 1 0.02
25 53 0.98
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTGTAAATCG
Found at i:36727454 original size:21 final size:19
Alignment explanation
Indices: 36727422--36727464 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
36727412 ATATTGATAC
* *
36727422 CAAATGTTGAAATTGTTTCT
1 CAAATGTAGAAAAT-TTTCT
36727442 CAAAGTGTAGAAAATTTTCT
1 CAAA-TGTAGAAAATTTTCT
36727462 CAA
1 CAA
36727465 CTTGGATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (19 bp):
CAAATGTAGAAAATTTTCT
Found at i:36730637 original size:43 final size:43
Alignment explanation
Indices: 36730576--36730662 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
36730566 TCGCCTATTA
**
36730576 GCGAATACTATACACAAGCAGACTCTATACAATTTGCCCATTG
1 GCGAATACTATACACAAGCAGACTCTATACAATTCACCCATTG
* *
36730619 GCGAATACTATACACAAGCAGACTTTCTACAATTCACCCATTG
1 GCGAATACTATACACAAGCAGACTCTATACAATTCACCCATTG
36730662 G
1 G
36730663 AAAAATACCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
GCGAATACTATACACAAGCAGACTCTATACAATTCACCCATTG
Found at i:36731508 original size:51 final size:48
Alignment explanation
Indices: 36731395--36731534 Score: 133
Period size: 51 Copynumber: 2.9 Consensus size: 48
36731385 TTTATTTAGT
* *
36731395 CTTTATCTCTT-ATTAATTTAATTAATTAGAGATAAAATAATAATTTA
1 CTTTATCTCTTAATTAATTTAATTAATTAGAGATAAAATAAAAATTCA
* * * *
36731442 ATATTATCACTTAATTATTTTAATTTAATTAGTA-ATAATATAAAAAATATCA
1 CT-TTATCTCTTAATTAATTTAA-TTAATTAG-AGATAAAAT-AAAAAT-TCA
* *
36731494 CTTTATCTCTTAATTAACTTAAATTAATTAAAGA-AAAATAA
1 CTTTATCTCTTAATTAA-TTTAATTAATTAGAGATAAAATAA
36731535 TTGTAAAACA
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
47 1 0.01
48 8 0.11
49 11 0.15
50 19 0.26
51 27 0.37
52 7 0.10
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (48 bp):
CTTTATCTCTTAATTAATTTAATTAATTAGAGATAAAATAAAAATTCA
Found at i:36737225 original size:16 final size:16
Alignment explanation
Indices: 36737198--36737231 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
36737188 TCATGGAATA
36737198 TTATTTTTTATA-TAT
1 TTATTTTTTATATTAT
36737213 TTATTTGTTTATATTAT
1 TTATTT-TTTATATTAT
36737230 TT
1 TT
36737232 CTATGCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 6 0.35
17 5 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTTTTATATTAT
Found at i:36743364 original size:88 final size:88
Alignment explanation
Indices: 36743215--36743606 Score: 586
Period size: 88 Copynumber: 4.5 Consensus size: 88
36743205 ATCAGTGAAG
* * * *
36743215 ATAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAAATCGAATACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
36743280 GGTTACAGTGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * *
36743303 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATTGAATACATCAGCGTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
36743368 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * *
36743391 AAAGTAGATCTTGCCTTCCTGCACCAACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
36743456 GGTTGCAGCAGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * *
36743479 ATAGTAGATCTTGCCTTCCTACACCGACAACGAAGTAGGTCGAAGACACCAGTCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
36743544 GGTTGCAACGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
36743567 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGAT
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGAT
36743607 TGATGGCCCC
Statistics
Matches: 275, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 275 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:36743579 original size:44 final size:44
Alignment explanation
Indices: 36743444--36743587 Score: 110
Period size: 44 Copynumber: 3.3 Consensus size: 44
36743434 AGACACCAGC
* * * *
36743444 CTTGCCTCCCTGGGTTGCAGCAGAGCAGGCTAAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGCAACGGAGCAGGTTAAAAATAGCAGAT
* ***** * * ** * * *
36743488 CTTGCCTTCCTACACCGACAACGAAGTAGGTCGAAGACACCAG-T
1 CTTGCCTCCCTGGGTTG-CAACGGAGCAGGTTAAAAATAGCAGAT
36743532 CTTGCCTCCCTGGGTTGCAACGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAACGGAGCAGGTTAAAAATAGCAGAT
*
36743576 CTTGCCTTCCTG
1 CTTGCCTCCCTG
36743588 CACCGACAAC
Statistics
Matches: 67, Mismatches: 31, Indels: 4
0.66 0.30 0.04
Matches are distributed among these distances:
43 18 0.27
44 35 0.52
45 14 0.21
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAACGGAGCAGGTTAAAAATAGCAGAT
Found at i:36743683 original size:44 final size:44
Alignment explanation
Indices: 36743620--36743952 Score: 421
Period size: 44 Copynumber: 7.7 Consensus size: 44
36743610 TGGCCCCAGC
*
36743620 CCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * *
36743664 CCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGTAAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
36743708 CCTATCTCCCTGGTCAGCAATGGAATAGATT-AA-A----GAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * *
36743746 CCTATCTCCCTAGACAGTAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
36743790 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * *
36743834 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * * *
36743878 TCTATCTCCCTAGG-CAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGA-AT
*
36743922 CCTATCTCCCTGGTCAGCAGTGGAGTAGGTT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTT
36743953 GAAAATAGCA
Statistics
Matches: 256, Mismatches: 24, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
38 29 0.11
39 2 0.01
40 1 0.00
42 1 0.00
43 5 0.02
44 216 0.84
45 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
Found at i:36743773 original size:126 final size:129
Alignment explanation
Indices: 36743620--36743952 Score: 440
Period size: 126 Copynumber: 2.6 Consensus size: 129
36743610 TGGCCCCAGC
* * * * *
36743620 CCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAACAGT
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
36743685 GGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAATGGAATAGATT-A-A-AGAAT
66 GGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAATGGAATAGATTAAGATAGAAT
* *
36743746 CCTATCTCCCTAGACAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGT
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
* * * * *
36743811 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGA
66 GGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAATGGAATAGATT-AAGA-T-AGA
36743876 AT
128 AT
* * * * *
36743878 TCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTGT-AGGTCCTATCTCCCTGGTCAGCAG
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGA-ATCCTATCTCCCTGGTCAGCAG
*
36743942 TGGAGTAGGTT
65 TGGAATAGGTT
36743953 GAAAATAGCA
Statistics
Matches: 180, Mismatches: 20, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
126 107 0.59
128 1 0.01
129 1 0.01
131 1 0.01
132 70 0.39
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (129 bp):
CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
GGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAATGGAATAGATTAAGATAGAAT
Found at i:36743779 original size:82 final size:82
Alignment explanation
Indices: 36743660--36743913 Score: 323
Period size: 82 Copynumber: 3.0 Consensus size: 82
36743650 TAAAGATTGT
**
36743660 GAATCCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAG
1 GAATCCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAG
*
36743725 CAATGGAATAGATTAAA
66 CAGTGGAATAGATTAAA
* *
36743742 GAATCCTATCTCCCTAGACAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAG
1 GAATCCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAG
* *
36743807 TAGTGGAATAGGTTGAAGA
66 CAGTGGAATAGATT-AA-A
* * *
36743826 TTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-AGAATTCTATCTCCCTA
1 ----GAATCCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTA-AATCCTATCTCCCT-
*
36743890 GG-CAGCAGTGGAATAGATTGAA
60 GGTCAGCAGTGGAATAGATTAAA
36743912 GA
1 GA
36743914 TTGTAGGTCC
Statistics
Matches: 149, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
82 74 0.50
83 2 0.01
84 1 0.01
86 1 0.01
87 1 0.01
88 68 0.46
89 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (82 bp):
GAATCCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCCTGGTCAG
CAGTGGAATAGATTAAA
Found at i:36744542 original size:44 final size:44
Alignment explanation
Indices: 36744494--36744597 Score: 110
Period size: 45 Copynumber: 2.3 Consensus size: 44
36744484 CTCCTTCAAC
36744494 TTGCAGTGGAGCAGACT-AAGTAAT-C-AAGTCTTATCCTC-CTAAAG
1 TTGCAGTGGAGCAGACTGAAG--ATGCGAA-TCTTAT-CTCGCTAAAG
*
36744538 TTGCAGT-GAGGCAGACTGAAGATGGCGAATCTTATCTCGCTGAAG
1 TTGCAGTGGA-GCAGACTGAAGAT-GCGAATCTTATCTCGCTAAAG
36744583 TTGCAGTGGAGCAGA
1 TTGCAGTGGAGCAGA
36744598 TTAAAGCCAA
Statistics
Matches: 52, Mismatches: 1, Indels: 13
0.79 0.02 0.20
Matches are distributed among these distances:
43 4 0.08
44 17 0.33
45 27 0.52
46 4 0.08
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (44 bp):
TTGCAGTGGAGCAGACTGAAGATGCGAATCTTATCTCGCTAAAG
Found at i:36744725 original size:129 final size:128
Alignment explanation
Indices: 36744567--36745012 Score: 664
Period size: 129 Copynumber: 3.5 Consensus size: 128
36744557 AGATGGCGAA
* *** * * * * *
36744567 TCTTATCTCGCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-TAATCCTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAG-AAACAAATCCTATCTCCCTGAAATTAC
* * * * * * *
36744631 AGTGGAA-CGGATTAAAATCAC-AGATCTTATCTCTATGAAGTTGTAGTAGAGTAGATCACATCG
65 TGT-GAAGCGGATTAAAATCTCGA-ATCTTATCTCTCTTAAGTTGCAG-AGAGCAGATCGCATCG
36744694 GG
127 GG
36744696 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAAATCCTATCTCCCTGAAATTAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAA-CAAATCCTATCTCCCTGAAATTAC
36744761 TGTGAAGCGGATTAAAATCTCGAATCTTATCTCTCTTAAGTTGCAGAGAGCAGATCGCATCGGG
65 TGTGAAGCGGATTAAAATCTCGAATCTTATCTCTCTTAAGTTGCAGAGAGCAGATCGCATCGGG
36744825 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAAATCCTATCTCCCTGAAATTAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAA-CAAATCCTATCTCCCTGAAATTAC
36744890 TGTGAAGCGGATTAAAATCTCGAATCTTATCTCTCTTAAGTTGCAGAGAGCAGATCGCATCGGG
65 TGTGAAGCGGATTAAAATCTCGAATCTTATCTCTCTTAAGTTGCAGAGAGCAGATCGCATCGGG
36744954 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAAATCCTATCTCCCTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAA-CAAATCCTATCTCCCTGA
36745013 TATTGTAATG
Statistics
Matches: 297, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
128 2 0.01
129 240 0.81
130 54 0.18
131 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAACAAATCCTATCTCCCTGAAATTACT
GTGAAGCGGATTAAAATCTCGAATCTTATCTCTCTTAAGTTGCAGAGAGCAGATCGCATCGGG
Found at i:36744751 original size:45 final size:44
Alignment explanation
Indices: 36744304--36745012 Score: 240
Period size: 44 Copynumber: 16.4 Consensus size: 44
36744294 GAAGATGGCA
* * * *
36744304 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGTTTGAAGCCAAT--
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATCAAG-AAATCG
* * * * *
36744348 AATCCTATCTCCCTGAAGTTACAGTGGAGGAGATTAAAGCCAAT--
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAG-AAATCG
* ** * *
36744392 AATCTTATCTCCCTGAAGTTACAGTGGAGTGGAT-TA-AAATCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATC-G
* * ** * * *
36744435 AGATTTTATCTCTCTGAAGTTATAG-AGAGCAGATC--G-CATCT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATCG
* * * *
36744476 AGA-CTTATCTCCTTCAACTTGCAGTGGAGCAGA-CTAAGTAATC-
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-AAGAAATCG
* * ***
36744519 AAGTCTTATC-CTCCTAAAGTTGCAGT-GAGGCAGACTGAAGATGGCG
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TCAAGAAATCG
* * *
36744565 AATCTTATCTCGCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT--
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAG-AAATCG
* * * * * *
36744609 AATCCTATCTCTCTGAAGTTGCAGTGGAACGGAT-TA-AAATCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATC-G
** * * * *
36744652 AGATCTTATCTCTATGAAGTTGTAGTAGAGTAGATC---ACATCG
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATCG
** * * *
36744694 GGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAGAAATCG
* * * * * * * *
36744739 AATCCTATCTCCCTGAAATTACTGTGAAGCGGATTAA-AATCTCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAA-ATCG
* * * *
36744783 AATCTTATCTCTCTTAAGTTGCAG-AGAGCAGATC--G-CATCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATCG
** * * *
36744823 GGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAGAAATCG
* * * * * * * *
36744868 AATCCTATCTCCCTGAAATTACTGTGAAGCGGATTAA-AATCTCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAA-ATCG
* * * *
36744912 AATCTTATCTCTCTTAAGTTGCAG-AGAGCAGATC--G-CATCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATCG
** * * *
36744952 GGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAGAAATCG
*
36744997 AATCCTATCTCCCTGA
1 AATCTTATCTCCCTGA
36745013 TATTGTAATG
Statistics
Matches: 479, Mismatches: 141, Indels: 89
0.68 0.20 0.13
Matches are distributed among these distances:
40 67 0.14
41 50 0.10
42 9 0.02
43 35 0.07
44 211 0.44
45 102 0.21
46 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAGAAATCG
Found at i:36744814 original size:217 final size:217
Alignment explanation
Indices: 36744348--36744815 Score: 539
Period size: 217 Copynumber: 2.2 Consensus size: 217
36744338 TGAAGCCAAT
* * * * * *
36744348 AATCCTATCTCCCTGAAGTTACAGTGGAGGAGATTAAAGCCAATAATCTTATCTCCCTGAAGTTA
1 AATCTTATCTCGCTGAAGTTGCAGTAGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTA
** * * * *
36744413 CAGTGGAGTGGATTAAAATCACAGATTTTATCTCTCTGAAGTTATAGAGAGCAGATCGCATCTAG
66 CAGTGGAACGGATTAAAATCACAGATCTTATCTCTATGAAGTTATAGAGAGCAGATCACATCGAG
* * * * * * *
36744478 ACTTATCTCCTTCAACTTGCAGTGGAGCAGACTAAGTAATCAAGTCTTATCCTCCTAAAGTTGCA
131 ACTTATCTCCCTCAACTTGCAGTGGAGCAGACCAAGAAAGCAAATCCTATCCTCCTAAAGTTACA
* * *
36744543 GTGAGGCAGACTGAAGATGGCG
196 GTGAAGCAGACTGAAAATCGCG
* * *
36744565 AATCTTATCTCGCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCTCTGAAGTTG
1 AATCTTATCTCGCTGAAGTTGCAGTAGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTA
* * *
36744630 CAGTGGAACGGATTAAAATCACAGATCTTATCTCTATGAAGTTGTAGTAGAGTAGATCACATCGG
66 CAGTGGAACGGATTAAAATCACAGATCTTATCTCTATGAAGTTATAG-AGAGCAGATCACATCGA
* * *
36744695 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAAATCCTAT-CTCCCTGAAA-T
130 GACTTATCTCCCTCAACTTGCAGTGGAGCAGA-CCAAGAAAGCAAATCCTATCCT-CCT-AAAGT
* * * *
36744758 TACTGTGAAGCGGA-TTAAAATCTCG
192 TACAGTGAAGCAGACTGAAAATCGCG
* *
36744783 AATCTTATCTCTCTTAAGTTGCAG-AGAGCAGAT
1 AATCTTATCTCGCTGAAGTTGCAGTAGAGCAGAT
36744816 CGCATCGGGT
Statistics
Matches: 211, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
217 108 0.51
218 72 0.34
219 28 0.13
220 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (217 bp):
AATCTTATCTCGCTGAAGTTGCAGTAGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTA
CAGTGGAACGGATTAAAATCACAGATCTTATCTCTATGAAGTTATAGAGAGCAGATCACATCGAG
ACTTATCTCCCTCAACTTGCAGTGGAGCAGACCAAGAAAGCAAATCCTATCCTCCTAAAGTTACA
GTGAAGCAGACTGAAAATCGCG
Found at i:36747965 original size:23 final size:23
Alignment explanation
Indices: 36747915--36747958 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36747905 ATCACAGAAA
36747915 AGTGCCAAAATGAATAGCACCAT
1 AGTGCCAAAATGAATAGCACCAT
* *
36747938 AGTGCCAGAATGAATTGCACC
1 AGTGCCAAAATGAATAGCACC
36747959 GATGTGCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (23 bp):
AGTGCCAAAATGAATAGCACCAT
Found at i:36749063 original size:23 final size:23
Alignment explanation
Indices: 36749037--36749090 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
36749027 TGATTTTTAA
*
36749037 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
36749060 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
36749083 ATTTAGAA
1 ATTTAGAA
36749091 AAAATTTAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:36749064 original size:13 final size:13
Alignment explanation
Indices: 36749046--36749088 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
36749036 AATTTTGAAT
36749046 TATTTAGTGATAA
1 TATTTAGTGATAA
36749059 TATTTAG-GAT--
1 TATTTAGTGATAA
36749069 TATTTAGTGATAA
1 TATTTAGTGATAA
36749082 TATTTAG
1 TATTTAG
36749089 AAAAAATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:36762815 original size:44 final size:45
Alignment explanation
Indices: 36762750--36762840 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
36762740 ACCTCTATTC
* * *
36762750 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
36762794 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
36762839 CA
1 CA
36762841 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:36762842 original size:16 final size:16
Alignment explanation
Indices: 36762821--36762889 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
36762811 GATTAGCTAT
36762821 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36762837 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
36762854 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
36762870 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36762886 TACA
1 TACA
36762890 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:36762866 original size:33 final size:32
Alignment explanation
Indices: 36762821--36762889 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
36762811 GATTAGCTAT
36762821 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
36762854 TACACCTTTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
36762886 TACA
1 TACA
36762890 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:36763057 original size:15 final size:17
Alignment explanation
Indices: 36763032--36763064 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
36763022 AAAAGTATAA
36763032 TGATAATTTT-ATTTTT
1 TGATAATTTTAATTTTT
36763048 TGAT-ATTTTAATTTTT
1 TGATAATTTTAATTTTT
36763064 T
1 T
36763065 ATTATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (17 bp):
TGATAATTTTAATTTTT
Found at i:36763085 original size:23 final size:23
Alignment explanation
Indices: 36763038--36763085 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
36763028 ATAATGATAA
*
36763038 TTTTATTTTTTGATATTTTAATT
1 TTTTATTTTTTGATATCTTAATT
36763061 TTTTATTATTTTGAT-TCTT-ATT
1 TTTTATT-TTTTGATATCTTAATT
36763083 TTT
1 TTT
36763086 AATTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 10 0.43
24 7 0.30
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (23 bp):
TTTTATTTTTTGATATCTTAATT
Found at i:36763257 original size:58 final size:58
Alignment explanation
Indices: 36763188--36763307 Score: 222
Period size: 58 Copynumber: 2.1 Consensus size: 58
36763178 CTTATATTAC
* *
36763188 AGTTTATATCCACATTATGCTAACATAACATTATTTGTTTTATGTCGTGTCAACAAAT
1 AGTTTATATCCACATTATGCTAACATAACATCATTTATTTTATGTCGTGTCAACAAAT
36763246 AGTTTATATCCACATTATGCTAACATAACATCATTTATTTTATGTCGTGTCAACAAAT
1 AGTTTATATCCACATTATGCTAACATAACATCATTTATTTTATGTCGTGTCAACAAAT
36763304 AGTT
1 AGTT
36763308 CAAAAATTAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (58 bp):
AGTTTATATCCACATTATGCTAACATAACATCATTTATTTTATGTCGTGTCAACAAAT
Found at i:36763362 original size:24 final size:25
Alignment explanation
Indices: 36763309--36763364 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
36763299 CAAATAGTTC
* *
36763309 AAAAATTATAAGTATAAAAATACAT
1 AAAAATTATAAATATAAAAATACAA
* *
36763334 CAAAATTA-AAATATAAAAATATAA
1 AAAAATTATAAATATAAAAATACAA
36763358 AAAAATT
1 AAAAATT
36763365 TCATAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAATTATAAATATAAAAATACAA
Found at i:36763424 original size:15 final size:17
Alignment explanation
Indices: 36763382--36763417 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36763372 ATTTAAAAAA
36763382 GTTAAAATACAATACAC
1 GTTAAAATACAATACAC
36763399 GTTAAAATACAATACAC
1 GTTAAAATACAATACAC
36763416 GT
1 GT
36763418 AAATACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (17 bp):
GTTAAAATACAATACAC
Found at i:36765781 original size:15 final size:16
Alignment explanation
Indices: 36765761--36765799 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
36765751 TTAACTAAAA
36765761 TGTATTT-ACGTGTAT
1 TGTATTTAACGTGTAT
36765776 TGTATTTTAACGTGTAT
1 TGTA-TTTAACGTGTAT
36765793 TGTATTT
1 TGTATTT
36765800 TAACTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.21, C:0.05, G:0.18, T:0.56
Consensus pattern (16 bp):
TGTATTTAACGTGTAT
Found at i:36765790 original size:17 final size:17
Alignment explanation
Indices: 36765768--36765803 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36765758 AAATGTATTT
36765768 ACGTGTATTGTATTTTA
1 ACGTGTATTGTATTTTA
36765785 ACGTGTATTGTATTTTA
1 ACGTGTATTGTATTTTA
36765802 AC
1 AC
36765804 TTTTTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50
Consensus pattern (17 bp):
ACGTGTATTGTATTTTA
Found at i:36765884 original size:26 final size:24
Alignment explanation
Indices: 36765831--36765885 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
36765821 AATTTTTTTA
* **
36765831 TATTTTTATATTTTAATTTTGATG
1 TATTTTTATATTATAATTTTGAAC
36765855 TATTTTTATACTTATAATTTTTGAAC
1 TATTTTTATA-TTATAA-TTTTGAAC
36765881 TATTT
1 TATTT
36765886 GTTGACACGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 10 0.38
25 5 0.19
26 11 0.42
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (24 bp):
TATTTTTATATTATAATTTTGAAC
Found at i:36765942 original size:58 final size:58
Alignment explanation
Indices: 36765878--36765997 Score: 222
Period size: 58 Copynumber: 2.1 Consensus size: 58
36765868 ATAATTTTTG
* *
36765878 AACTATTTGTTGACACGACATAAAATAAATGATGTTATGTTAGCATAATGTGGATATA
1 AACTATTTGTTGACACGACATAAAACAAATAATGTTATGTTAGCATAATGTGGATATA
36765936 AACTATTTGTTGACACGACATAAAACAAATAATGTTATGTTAGCATAATGTGGATATA
1 AACTATTTGTTGACACGACATAAAACAAATAATGTTATGTTAGCATAATGTGGATATA
36765994 AACT
1 AACT
36765998 GTAATATAAG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (58 bp):
AACTATTTGTTGACACGACATAAAACAAATAATGTTATGTTAGCATAATGTGGATATA
Found at i:36766126 original size:23 final size:23
Alignment explanation
Indices: 36766100--36766147 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
36766090 AAATTTAATT
*
36766100 AAAAATAAGA-ATCAAAATAATAA
1 AAAAATAAAATATCAAAA-AATAA
*
36766123 AAAATTAAAATATCAAAAAATAA
1 AAAAATAAAATATCAAAAAATAA
36766146 AA
1 AA
36766148 TTATCATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (23 bp):
AAAAATAAAATATCAAAAAATAA
Found at i:36775722 original size:29 final size:29
Alignment explanation
Indices: 36775689--36775936 Score: 193
Period size: 29 Copynumber: 8.5 Consensus size: 29
36775679 GGCAATCATT
* *
36775689 GATTATGAAAAGGGATAGCT-TCGACTATC
1 GATTATGAAAAGGGAT-GGTGTCGACCATC
*
36775718 GATTATGAAAAGGGATGGTGAT-GAGCATC
1 GATTATGAAAAGGGATGGTG-TCGACCATC
* * *
36775747 AACTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGGTGTCGACCATC
* * * * *
36775776 GAATATGAAAAAGAGATAGCT-TC-AGCTATT
1 GATTATG-AAAAGGGAT-GGTGTCGA-CCATC
* * * *
36775806 GATTATAAAAAGGGATAGCT-TCGGCTATC
1 GATTATGAAAAGGGAT-GGTGTCGACCATC
*
36775835 GATTATG-AAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGGTGTCGACCATC
* * *
36775863 AACTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGGTGTCGACCATC
* *
36775892 AATTAATGAAAAGGGATGGTTTCGACCATC
1 GATT-ATGAAAAGGGATGGTGTCGACCATC
*
36775922 GAATATGAAAAGGGA
1 GATTATGAAAAGGGA
36775937 CGATTACGAC
Statistics
Matches: 178, Mismatches: 31, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
27 2 0.01
28 21 0.12
29 110 0.62
30 43 0.24
31 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (29 bp):
GATTATGAAAAGGGATGGTGTCGACCATC
Found at i:36775910 original size:59 final size:57
Alignment explanation
Indices: 36775692--36775950 Score: 177
Period size: 59 Copynumber: 4.4 Consensus size: 57
36775682 AATCATTGAT
* * * * *
36775692 TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGATGAGCATCAAC
1 TATGAAAAGGGAT-GCTACGACCATCAATTATGAAAAGGGATGGTGACGACCATCAAC
* * * * * ** *
36775750 TATGAAAAGGGATGGTGACGACCATCGAA-TATGAAAAAGAGATAGCT-TC-AGCTATTGAT
1 TATGAAAAGGGATGCT-ACGACCATC-AATTATG-AAAAGGGAT-GGTGACGA-CCATCAAC
* * * * *
36775809 TATAAAAAGGGATAGCTTCGGCTATCGATTATG-AAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGAT-GCTACGACCATCAATTATGAAAAGGGATGGTGACGACCATCAAC
* **
36775866 TATGAAAAGGGATGGTGACGACCATCAATTAATGAAAAGGGATGGTTTCGACCATCGAA-
1 TATGAAAAGGGATGCT-ACGACCATCAATT-ATGAAAAGGGATGGTGACGACCATC-AAC
* *
36775925 TATGAAAAGGGACGATTACGACCATC
1 TATGAAAAGGGATG-CTACGACCATC
36775951 GTTTAGCTCA
Statistics
Matches: 151, Mismatches: 36, Indels: 27
0.71 0.17 0.13
Matches are distributed among these distances:
56 4 0.03
57 35 0.23
58 30 0.20
59 75 0.50
60 7 0.05
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (57 bp):
TATGAAAAGGGATGCTACGACCATCAATTATGAAAAGGGATGGTGACGACCATCAAC
Found at i:36775933 original size:116 final size:117
Alignment explanation
Indices: 36775692--36775936 Score: 345
Period size: 116 Copynumber: 2.1 Consensus size: 117
36775682 AATCATTGAT
* *
36775692 TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGATGAGCATCAACTATGAAA
1 TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
* * *
36775757 AGGGATGGTGACGACCATCGAATATGAAAAAGAGATAGCTTCAGCTATTGAT
66 AGGGATGGTGACGACCATCGAATATGAAAAAGAGATAGCTTCAGCCATCGAA
* *
36775809 TATAAAAAGGGATAGCTTCGGCTATCGATTATG-AAAGGGATGGTGACGACCATCAACTATGAAA
1 TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
* * *
36775873 AGGGATGGTGACGACCATC-AATTAATG-AAAAGGGATGGTTTC-GACCATCGAA
66 AGGGATGGTGACGACCATCGAA-T-ATGAAAAAGAGATAGCTTCAG-CCATCGAA
36775925 TATGAAAAGGGA
1 TATGAAAAGGGA
36775937 CGATTACGAC
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
115 3 0.03
116 77 0.68
117 34 0.30
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.23
Consensus pattern (117 bp):
TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
AGGGATGGTGACGACCATCGAATATGAAAAAGAGATAGCTTCAGCCATCGAA
Found at i:36778456 original size:23 final size:23
Alignment explanation
Indices: 36778430--36778504 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
36778420 TAATTTTTAA
* *
36778430 ATTTTGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTGATAAT
36778453 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
36778476 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
36778499 ATTTAG
1 ATTTAG
36778505 GAAAAATCTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.49
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:36778457 original size:13 final size:13
Alignment explanation
Indices: 36778439--36778504 Score: 72
Period size: 13 Copynumber: 5.5 Consensus size: 13
36778429 AATTTTGAAT
*
36778439 TATTTAGTAATAA
1 TATTTAGTGATAA
*
36778452 TATTTA--GA-AT
1 TATTTAGTGATAA
36778462 TATTTAGTGATAA
1 TATTTAGTGATAA
36778475 TATTTAG-GAT--
1 TATTTAGTGATAA
36778485 TATTTAGTGATAA
1 TATTTAGTGATAA
36778498 TATTTAG
1 TATTTAG
36778505 GAAAAATCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
10 14 0.32
11 4 0.09
12 5 0.11
13 21 0.48
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:36799646 original size:20 final size:20
Alignment explanation
Indices: 36799621--36799673 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
36799611 GGTAATTTGG
**
36799621 TATCGATACCACTTTAAAAA
1 TATCGATACCACTGGAAAAA
36799641 TATCGATACTCA-TGGAAAAA
1 TATCGATAC-CACTGGAAAAA
*
36799661 TATCAATACCACT
1 TATCGATACCACT
36799674 AGGTTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (20 bp):
TATCGATACCACTGGAAAAA
Found at i:36801741 original size:20 final size:20
Alignment explanation
Indices: 36801712--36801765 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
36801702 AAATCAAGAT
*
36801712 AAAATTATTTTAACCAAGTC
1 AAAATCATTTTAACCAAGTC
* * * *
36801732 ATAATGATTTCAACCAAGTT
1 AAAATCATTTTAACCAAGTC
36801752 AAAATCATTTTAAC
1 AAAATCATTTTAAC
36801766 ACATCAAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (20 bp):
AAAATCATTTTAACCAAGTC
Found at i:36801790 original size:40 final size:40
Alignment explanation
Indices: 36801706--36801790 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
36801696 ATTTTAAAAT
* * * *
36801706 CAAGATAAAATTATTTTAACCAAGTCATAATGATTTCAAC
1 CAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTCAAA
36801746 CAAGTTAAAATCATTTTAA-CACA-TCAAAATGATTTCCAAA
1 CAAGTTAAAATCATTTTAACCA-AGTCAAAATGATTT-CAAA
36801786 CAAGT
1 CAAGT
36801791 CAGAATTACT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 13 0.33
40 26 0.67
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (40 bp):
CAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTCAAA
Found at i:36815618 original size:33 final size:33
Alignment explanation
Indices: 36815576--36815665 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
36815566 TCATGATGCC
* * * *
36815576 AAGCATTATTATGGGGATGGACCCTTCCTATTT
1 AAGCATTATTATCGAGATGAACCCGTCCTATTT
*
36815609 AAGCATTATTATCGAGATGAATCCGTCCTATTT
1 AAGCATTATTATCGAGATGAACCCGTCCTATTT
*
36815642 AAGCATTATTA-CTAGGATGAACCC
1 AAGCATTATTATCGA-GATGAACCC
36815666 TTCATGATGC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
32 2 0.04
33 47 0.96
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (33 bp):
AAGCATTATTATCGAGATGAACCCGTCCTATTT
Found at i:36823553 original size:15 final size:15
Alignment explanation
Indices: 36823533--36823569 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
36823523 CTAACGAATG
*
36823533 GAATGATCCTGGTCT
1 GAATGATCATGGTCT
36823548 GAATGATCATGGTCT
1 GAATGATCATGGTCT
*
36823563 AAATGAT
1 GAATGAT
36823570 GATCAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (15 bp):
GAATGATCATGGTCT
Found at i:36825703 original size:15 final size:15
Alignment explanation
Indices: 36825683--36825718 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
36825673 TAGGGAAGGG
*
36825683 AATGATCCTGGTCTA
1 AATGATCATGGTCTA
*
36825698 AATGATCATGGTCTC
1 AATGATCATGGTCTA
36825713 AATGAT
1 AATGAT
36825719 GATCCAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (15 bp):
AATGATCATGGTCTA
Found at i:36828226 original size:27 final size:27
Alignment explanation
Indices: 36828196--36828286 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
36828186 TATCTTGTCT
**
36828196 GCCTTTGTGGTGTACTCTGTATAAATA
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
36828223 GCCTTTGTGGCATACTCTGTATGAATT
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
36828250 GCCTTTGTGGCATACTCTATATAGATA
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
36828277 ACTTTTGTGG
1 GCCTTTGTGG
36828287 TGAACTCTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (27 bp):
GCCTTTGTGGCATACTCTGTATAAATA
Found at i:36828266 original size:54 final size:54
Alignment explanation
Indices: 36828195--36828340 Score: 134
Period size: 54 Copynumber: 2.7 Consensus size: 54
36828185 GTATCTTGTC
** * * *
36828195 TGCCTTTGTGGTGTACTCTGTATAAATAGCCTTTGTGG-CATACTCTGTA-TGAAT
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCA-ACTCT-CACTGAAT
* * * *
36828249 TGCCTTTGTGGCATACTCTATATAGATAACTTTTGTGGTGAACTCTCACTGGAT
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCAACTCTCACTGAAT
* * * * *
36828303 TTCCTTTGTGGCATACTCTAAATAGATCACCTTGGTGG
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGG
36828341 CATACCTTAC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.97
55 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (54 bp):
TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCAACTCTCACTGAAT
Found at i:36828320 original size:27 final size:25
Alignment explanation
Indices: 36828224--36828345 Score: 66
Period size: 27 Copynumber: 4.6 Consensus size: 25
36828214 GTATAAATAG
* *
36828224 CCTTTGTGGCATACTCTGTATGAATTG
1 CCTTTGTGGCATACTC--TATGGATTA
* *
36828251 CCTTTGTGGCATACTCTATATAGATAA
1 CCTTTGTGGCATACTC--TATGGATTA
* * *
36828278 CTTTTGTGGTGA-ACTCTCACTGGATTT
1 CCTTTGTGG-CATACTCT-A-TGGATTA
* *
36828305 CCTTTGTGGCATACTCTAAATAGATCA
1 CCTTTGTGGCATACTCT--ATGGATTA
*
36828332 CCTTGGTGGCATAC
1 CCTTTGTGGCATAC
36828346 CTTACACGAT
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 68 0.93
28 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (25 bp):
CCTTTGTGGCATACTCTATGGATTA
Found at i:36843936 original size:26 final size:26
Alignment explanation
Indices: 36843883--36843936 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
36843873 TCAGTACAGT
* * **
36843883 GTGGGCCTTAGCCCATTATGGTAACA
1 GTGGGCCTAAGCCCAATACAGTAACA
*
36843909 GTGGGCCTAAGCCCAATACAGTATCA
1 GTGGGCCTAAGCCCAATACAGTAACA
36843935 GT
1 GT
36843937 ATGGTGCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
GTGGGCCTAAGCCCAATACAGTAACA
Found at i:36844130 original size:27 final size:27
Alignment explanation
Indices: 36844083--36844151 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
36844073 CAGCAGAGCT
36844083 ACCAGT-ACAAT-ATATGTGGCAAAGCA
1 ACCAGTAACAATAAT-TGTGGCAAAGCA
* *
36844109 ACCAGTAACAGTAATTGTGGCAAAGCC
1 ACCAGTAACAATAATTGTGGCAAAGCA
*
36844136 ACCAGTATCAATAATT
1 ACCAGTAACAATAATT
36844152 CCTCCATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.16
27 29 0.78
28 2 0.05
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
ACCAGTAACAATAATTGTGGCAAAGCA
Found at i:36844387 original size:26 final size:26
Alignment explanation
Indices: 36844356--36844441 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
36844346 ACCCTTCGGG
*
36844356 GATAATTTACCGATTGAGGGTATTTT
1 GATAATTTACCGATTGAGGGTATTTC
* *
36844382 GGTAATTTA-CGTATTGAGAGTATTTC
1 GATAATTTACCG-ATTGAGGGTATTTC
*
36844408 GATAATTTACCCATTGAGGGTATTTC
1 GATAATTTACCGATTGAGGGTATTTC
36844434 GATAATTT
1 GATAATTT
36844442 GGGCCCATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.04
26 49 0.94
27 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (26 bp):
GATAATTTACCGATTGAGGGTATTTC
Found at i:36850969 original size:27 final size:27
Alignment explanation
Indices: 36850914--36850975 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
36850904 AAAGAAAATG
*
36850914 AAAATACCAAAGGCCTTTTTAGTCAAAA
1 AAAATACCAAAGGCCTTATTAG-CAAAA
*
36850942 AAAATACCAAAGGCCTTATTA-CATAA
1 AAAATACCAAAGGCCTTATTAGCAAAA
*
36850968 AAATTACC
1 AAAATACC
36850976 CCAAAGTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 11 0.35
28 20 0.65
ACGTcount: A:0.48, C:0.19, G:0.08, T:0.24
Consensus pattern (27 bp):
AAAATACCAAAGGCCTTATTAGCAAAA
Found at i:36851600 original size:27 final size:27
Alignment explanation
Indices: 36851570--36851621 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
36851560 TCATCTCCTA
*
36851570 GGGGTATAGCAGTCATTCTACCCTTTG
1 GGGGTATAGCAGTAATTCTACCCTTTG
** *
36851597 GGGGTATTTCAGTAATTTTACCCTT
1 GGGGTATAGCAGTAATTCTACCCTT
36851622 CGAGGGTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGGTATAGCAGTAATTCTACCCTTTG
Found at i:36851652 original size:26 final size:26
Alignment explanation
Indices: 36851598--36851794 Score: 277
Period size: 26 Copynumber: 7.5 Consensus size: 26
36851588 TACCCTTTGG
** *
36851598 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTTGGTAA-TTTACCCATCGA
* * *
36851625 GGGTTTTTTGCTAATTTACCCATTGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
36851651 GGTTATTTTGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
36851677 GGGTATTTTGCTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
* *
36851703 GGGTATCTTGGTAATTTACCCATTGA
1 GGGTATTTTGGTAATTTACCCATCGA
36851729 GGGTATTTTGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
36851755 GGGTATTTCGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
36851781 GGGTATTTCGGTAA
1 GGGTATTTTGGTAA
36851795 CTTAGACCCA
Statistics
Matches: 152, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 142 0.93
27 10 0.07
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTACCCATCGA
Found at i:36857683 original size:24 final size:24
Alignment explanation
Indices: 36857618--36857736 Score: 161
Period size: 25 Copynumber: 4.9 Consensus size: 24
36857608 GCATCCCCGA
36857618 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
36857642 AACAAATGGAGAA-TTTGAAAAGGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
36857667 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
36857691 AACAAATGGAGAA-GTTGAAAATGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
*
36857716 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
36857737 TATAGCAAGG
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
23 4 0.05
24 36 0.43
25 40 0.48
26 4 0.05
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.18
Consensus pattern (24 bp):
AACAATGGAAAGGTTGAAAAGGAT
Found at i:36857690 original size:49 final size:49
Alignment explanation
Indices: 36857618--36857736 Score: 211
Period size: 49 Copynumber: 2.4 Consensus size: 49
36857608 GCATCCCCGA
*
36857618 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAATTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
*
36857667 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAATGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
*
36857716 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
36857737 TATAGCAAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.18
Consensus pattern (49 bp):
AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
Found at i:36859486 original size:51 final size:49
Alignment explanation
Indices: 36859354--36859546 Score: 215
Period size: 51 Copynumber: 3.8 Consensus size: 49
36859344 ATTGTTATCA
* * * * *
36859354 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAC-C
* * *
36859404 TTCAGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CC
* * *
36859454 TTCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATC
1 TT-CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AACC
* * *
36859505 TATCGATACACATAGTAGTCTGCACTTAGTACTACACACGTG
1 T-TCGGTACACATAGTAGCCTGCACATAGTACTACACACGTG
36859547 TTTATAGGCA
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 44 0.36
51 77 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACC
Found at i:36861060 original size:51 final size:51
Alignment explanation
Indices: 36860984--36861167 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
36860974 TATAAACACG
* * * *
36860984 TGTGTAGTACTAAGTGCAAGCTACTACGTGTA-TGGTTA-GATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AAGGAT-ATGGTCACA
* * * *
36861035 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
** * * * * *
36861086 TGTGTAGTACTATGTGCAGGCTACTAATTGAACCGGAA-AATTTGATCACC
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
* *
36861136 TGTGTAGTACTATGTGAAGACTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
36861168 TCGAATGATA
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
50 35 0.32
51 72 0.65
52 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
Found at i:36867706 original size:23 final size:23
Alignment explanation
Indices: 36867675--36867725 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
36867665 ACCTACTTTC
* *
36867675 TTACTATAGTAATTTTCGGGGTA
1 TTACAATAGTAATTTTCGGGATA
36867698 TTACAATAGTAATTTTCGGGATA
1 TTACAATAGTAATTTTCGGGATA
36867721 TTACA
1 TTACA
36867726 GCCTTAGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (23 bp):
TTACAATAGTAATTTTCGGGATA
Found at i:36871980 original size:50 final size:51
Alignment explanation
Indices: 36871915--36872055 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 51
36871905 TTATTATCAT
* * *
36871915 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AA-CTTT
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATC-TA
* * * *
36871965 TCGGTTCACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTA
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATCTA
* *
36872016 TCGATACACGTAGTAGTCTGCACTTAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
36872056 TTTATAGGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
50 39 0.51
51 37 0.48
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (51 bp):
TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATCTA
Found at i:36872038 original size:51 final size:51
Alignment explanation
Indices: 36871882--36872051 Score: 184
Period size: 51 Copynumber: 3.4 Consensus size: 51
36871872 TTCGGTGGTT
* * * *
36871882 TGCACATAGTACCACCCATGTAATTATTATC-ATTCGATACACGTAGTAGCC
1 TGCACATAGTACTACACATGTGATCATTATCTA-TCGATACACGTAGTAGCC
* * * * * *
36871933 TTCACATAGTACTACACACGTGATCA--AACTTTTCGGTTCACGTAGTAGCC
1 TGCACATAGTACTACACATGTGATCATTATC-TATCGATACACGTAGTAGCC
* *
36871983 TGCACATAGTACTACACATGTGACCATTATCTATCGATACACGTAGTAGTC
1 TGCACATAGTACTACACATGTGATCATTATCTATCGATACACGTAGTAGCC
*
36872034 TGCACTTAGTACTACACA
1 TGCACATAGTACTACACA
36872052 CGTGTTTATA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.41
51 53 0.55
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (51 bp):
TGCACATAGTACTACACATGTGATCATTATCTATCGATACACGTAGTAGCC
Found at i:36877546 original size:12 final size:11
Alignment explanation
Indices: 36877529--36877575 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
36877519 TTAAGTTAAA
*
36877529 TAAAATATATGT
1 TAAAAT-TAAGT
36877541 TAAAATTAAGT
1 TAAAATTAAGT
36877552 TAATAATTAAGT
1 TAA-AATTAAGT
36877564 TAAAATGTAAGT
1 TAAAAT-TAAGT
36877576 ACATAAAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (11 bp):
TAAAATTAAGT
Found at i:36878443 original size:45 final size:44
Alignment explanation
Indices: 36878349--36878466 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 44
36878339 CATTGTTTGA
* * * *
36878349 GAAAAGGAAAAGACCATTATTGAAAGAAATCATGGTATTATAATC
1 GAAAA-GAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
* *
36878394 GAAAAGAAAAATACCATGATTGAAAGATATCATGGCACTA-AATTT
1 GAAAAG-AAAAGACCATGATTGAAAGATATCATGGCACTATAA-TC
* * *
36878439 GAAAAGGAAAGACCAAGGTTGAAAGATA
1 GAAAAGAAAAGACCATGATTGAAAGATA
36878467 CTATGACATC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
44 21 0.34
45 40 0.66
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.21
Consensus pattern (44 bp):
GAAAAGAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
Found at i:36881052 original size:20 final size:20
Alignment explanation
Indices: 36881027--36881065 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36881017 TACTTTCTTA
36881027 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
36881047 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
36881066 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:36881054 original size:12 final size:12
Alignment explanation
Indices: 36881016--36881066 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
36881006 ATCATGATCT
* *
36881016 TTACTTTCTTAT
1 TTACTTGCTTAC
*
36881028 TTACTTACTCT-C
1 TTACTTGCT-TAC
*
36881040 TTACTTGTTTAC
1 TTACTTGCTTAC
36881052 TTACTTGCTTAC
1 TTACTTGCTTAC
36881064 TTA
1 TTA
36881067 AATAACTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.57
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:36888865 original size:62 final size:62
Alignment explanation
Indices: 36888799--36888915 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 62
36888789 ACACACGTCT
* *
36888799 GTGTCCCTACCCGTGTGG-CTTTATACCACGAACAGTGAGGTACACGGCCTGGGCATACACCC
1 GTGTCCCTACCCGTGTGGTC-TTATACCACAAACAGTGAGGTACAAGGCCTGGGCATACACCC
** * *
36888861 GTGTCCCTGGCCGTGTGGTCTTGTACCACAAACAGTGAGTTACAAGGCCTGGGCA
1 GTGTCCCTACCCGTGTGGTCTTATACCACAAACAGTGAGGTACAAGGCCTGGGCA
36888916 CATGCCCCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
62 47 0.98
63 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (62 bp):
GTGTCCCTACCCGTGTGGTCTTATACCACAAACAGTGAGGTACAAGGCCTGGGCATACACCC
Found at i:36888928 original size:62 final size:62
Alignment explanation
Indices: 36888800--36888938 Score: 163
Period size: 62 Copynumber: 2.2 Consensus size: 62
36888790 CACACGTCTG
** * * * *
36888800 TGTCCCTACCCGTGTGGCTTTATACCACGAACAGTGAGGTACACGGCCTGGGCATACACCCG
1 TGTCCCTGGCCGTGTGGCTTTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
* * **
36888862 TGTCCCTGGCCGTGTGG-TCTTGTACCACAAACAGTGAGTTACAAGGCCTGGGCACATGCCCC
1 TGTCCCTGGCCGTGTGGCT-TTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
*
36888924 TGTCCCTGGCTGTGT
1 TGTCCCTGGCCGTGT
36888939 CAACTCTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 1 0.02
62 64 0.98
ACGTcount: A:0.18, C:0.31, G:0.27, T:0.24
Consensus pattern (62 bp):
TGTCCCTGGCCGTGTGGCTTTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
Found at i:36892361 original size:19 final size:20
Alignment explanation
Indices: 36892313--36892375 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
36892303 ATTCATCATA
36892313 TTAA-TATTTTTAACATAAT
1 TTAATTATTTTTAACATAAT
36892332 TTAATTA-TTTTATA-AT-AT
1 TTAATTATTTTTA-ACATAAT
*
36892350 TTAATTATTTTTCGACAATAAT
1 TTAATTATTTTT-AAC-ATAAT
36892372 TTAA
1 TTAA
36892376 CCGAAATAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
18 9 0.25
19 16 0.44
20 3 0.08
21 2 0.06
22 6 0.17
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAATTATTTTTAACATAAT
Found at i:36892649 original size:21 final size:21
Alignment explanation
Indices: 36892625--36892665 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36892615 TCATAATAGA
36892625 ATTCAATAACATA-TCACATAT
1 ATTCAAT-ACATACTCACATAT
*
36892646 ATTCCATACATACTCACATA
1 ATTCAATACATACTCACATA
36892666 ATTTCCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCAATACATACTCACATAT
Found at i:36892671 original size:21 final size:20
Alignment explanation
Indices: 36892633--36892674 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
36892623 GAATTCAATA
36892633 ACATATCACATATATTCCAT
1 ACATATCACATATATTCCAT
36892653 ACATACTCACATA-ATTTCCAT
1 ACATA-TCACATATA-TTCCAT
36892674 A
1 A
36892675 GCACTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATATCACATATATTCCAT
Found at i:36896984 original size:19 final size:20
Alignment explanation
Indices: 36896936--36896998 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
36896926 ATTCATCATA
36896936 TTAA-TATTTTTAACATAAT
1 TTAATTATTTTTAACATAAT
36896955 TTAATTA-TTTTATA-AT-AT
1 TTAATTATTTTTA-ACATAAT
*
36896973 TTAATTATTTTTCGACAATAAT
1 TTAATTATTTTT-AAC-ATAAT
36896995 TTAA
1 TTAA
36896999 CCGAAATAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
18 9 0.25
19 16 0.44
20 3 0.08
21 2 0.06
22 6 0.17
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAATTATTTTTAACATAAT
Found at i:36897272 original size:21 final size:21
Alignment explanation
Indices: 36897248--36897288 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36897238 TCATAATAGA
36897248 ATTCAATAACATA-TCACATAT
1 ATTCAAT-ACATACTCACATAT
*
36897269 ATTCCATACATACTCACATA
1 ATTCAATACATACTCACATA
36897289 ATTTCCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCAATACATACTCACATAT
Found at i:36897294 original size:21 final size:20
Alignment explanation
Indices: 36897256--36897297 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
36897246 GAATTCAATA
36897256 ACATATCACATATATTCCAT
1 ACATATCACATATATTCCAT
36897276 ACATACTCACATA-ATTTCCAT
1 ACATA-TCACATATA-TTCCAT
36897297 A
1 A
36897298 GCACTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATATCACATATATTCCAT
Found at i:36901181 original size:111 final size:113
Alignment explanation
Indices: 36901003--36901229 Score: 422
Period size: 111 Copynumber: 2.0 Consensus size: 113
36900993 CGCAAAAAAA
36901003 AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACA
1 AAATCATGCATTATATATGA-ATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACA
36901068 TAGCTAAGTTATTGAAAGAAAATAATTA-TTTTTTCTCAAATCCGTATT
65 TAGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
*
36901116 AAATCATGCATTATCTATG-ATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
1 AAATCATGCATTATATATGAATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
36901180 AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
66 AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
36901228 AA
1 AA
36901230 TAATTTATTA
Statistics
Matches: 112, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
111 72 0.64
112 22 0.20
113 18 0.16
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (113 bp):
AAATCATGCATTATATATGAATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
Found at i:36902955 original size:23 final size:22
Alignment explanation
Indices: 36902911--36902955 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
36902901 GATAAAAACT
*
36902911 AAACCCCAAAATTTGAAAACAA
1 AAACCCCAAAACTTGAAAACAA
36902933 AAACCCTCAAAACTT-AAACACAA
1 AAACCC-CAAAACTTGAAA-ACAA
36902956 TATTATCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (22 bp):
AAACCCCAAAACTTGAAAACAA
Found at i:36903884 original size:33 final size:33
Alignment explanation
Indices: 36903829--36903901 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
36903819 TTGTAAAAAA
36903829 TATTTTTAAAATTAAAATTAAATTTTGTATTATT
1 TATTTTTAAAA-TAAAATTAAATTTTGTATTATT
*
36903863 TATTTTTACAAA-AAAATTAAATTTTTTATTATT
1 TATTTTTA-AAATAAAATTAAATTTTGTATTATT
36903896 TATTTT
1 TATTTT
36903902 GAATTTGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
33 26 0.70
34 8 0.22
35 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (33 bp):
TATTTTTAAAATAAAATTAAATTTTGTATTATT
Found at i:36904654 original size:16 final size:16
Alignment explanation
Indices: 36904611--36904654 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
36904601 GAAATTTAAT
*
36904611 TATTTTATTGAAATAA
1 TATTTTATTTAAATAA
*
36904627 TATTTTAATTAAGATAA
1 TATTTTATTTAA-ATAA
36904644 T-TTTTATTTAA
1 TATTTTATTTAA
36904655 TAAATGGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TATTTTATTTAAATAA
Found at i:36909151 original size:17 final size:17
Alignment explanation
Indices: 36909129--36909161 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36909119 TACACTAATG
*
36909129 AATACAAATAATCAATT
1 AATACAAATAAGCAATT
36909146 AATACAAATAAGCAAT
1 AATACAAATAAGCAAT
36909162 ACAATACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.12, G:0.03, T:0.24
Consensus pattern (17 bp):
AATACAAATAAGCAATT
Found at i:36909414 original size:23 final size:23
Alignment explanation
Indices: 36909371--36909416 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
36909361 GAAAAAGAAT
*
36909371 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
36909394 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
36909417 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:36910964 original size:44 final size:44
Alignment explanation
Indices: 36910910--36911033 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
36910900 GATTCATTAT
* ** *
36910910 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTAATGG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
*
36910954 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
* * * *
36910998 CTTCAATCTGCTTCACTGTAACTTTAGGAAGATAAG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAG
36911034 ATCCGTCATA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
Found at i:36911309 original size:44 final size:44
Alignment explanation
Indices: 36911259--36911604 Score: 140
Period size: 44 Copynumber: 7.4 Consensus size: 44
36911249 GCTCCGATGA
36911259 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
* * * * * * * *
36911303 AACTTCAAGAAGATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGC
1 AACTTCAGGGAGAT--AA---GGC-----TGGTGGCTTCAATCTGTTTCACTGC
* * * * * * ** * *
36911357 AACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTACTCCGCTGC
1 AACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTGTTTCACTGC
*
36911402 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCT-TCTTCACTAC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGT-TTCACTGC
* ** * *
36911446 AACTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATG-TTCTACTGC
1 AACTTCAGGGAGATAAG----G-C-T--GGTG--GCTTCAATCTGTTTC-ACTGC
* * * * * * * *
36911500 AACTTCAGAGAAATAAGATCTGCTGTCTTCAGTCTGTTCCGCT-C
1 AACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTGTTTCACTGC
* *
36911544 AACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
*
36911588 AACTTCAGGAAGATAAG
1 AACTTCAGGGAGATAAG
36911605 ATCCGCCATA
Statistics
Matches: 214, Mismatches: 62, Indels: 52
0.65 0.19 0.16
Matches are distributed among these distances:
43 18 0.08
44 76 0.36
45 41 0.19
46 4 0.02
47 2 0.01
48 1 0.00
49 5 0.02
50 3 0.01
52 4 0.02
53 3 0.01
54 57 0.27
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
Found at i:36911418 original size:45 final size:45
Alignment explanation
Indices: 36911337--36912039 Score: 234
Period size: 44 Copynumber: 15.0 Consensus size: 45
36911327 ATAATTTGTA
* * *
36911337 GCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * * *
36911382 TCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * *
36911426 GCTTCAATCTTCTTCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------TG
* * ** * * * *
36911478 AAGCTTTAATATGTTCTACTGCAACTTCAGAGAAATAAGATCTGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * ** * * * * *
36911525 TCTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * *
36911568 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTAG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------T-G
* * ** * * * *
36911621 AGCTTTAATTTGTTCCACTACAACTTCAGGGAAATAATATCCCCTG
1 -GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * ** * * * * *
36911667 TCTTCAGTCTGCTCCGTTGTAACTTTAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * *
36911711 GCTTCAATCTTCTTCACTGCAACTTTAGGAAGATAAGATTCGCCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------TG
** * ** * *
36911763 TATATTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATCCGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * *
36911810 TCTTCAGTCTACTCCGA-TGCAACTTCAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCC-ACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * *
36911854 GCTTCAATCTACTTCACTGCAACTTCAAGAAGATAAGATCCATCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCC-GC------TG
* * *
36911906 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * * *
36911953 TCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAG-GCTAG-TA
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATC-CGCTG
* * * * *
36911997 GCTTCAATCTTCTTCACTACAACTTCAGGAAGAGAAGATCCGC
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGC
36912040 CATAATTTGT
Statistics
Matches: 468, Mismatches: 144, Indels: 92
0.66 0.20 0.13
Matches are distributed among these distances:
43 19 0.04
44 163 0.35
45 135 0.29
46 2 0.00
47 7 0.01
52 7 0.01
53 5 0.01
54 130 0.28
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
Found at i:36912008 original size:571 final size:571
Alignment explanation
Indices: 36910926--36912254 Score: 2182
Period size: 571 Copynumber: 2.3 Consensus size: 571
36910916 TCTGCTCCGT
* * * * * * * *
36910926 TGCAACTTCAGGGAGATAAG-GCTAATGGCTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTAA-GGAGATAAG
* * *
36910990 GCTAGTGGCTTCAATCTGCTTCACTGTAACTTTAGGAAGATAAGATCCGTCATAATTTAGAGCTT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTT
* * *
36911055 TAATTTGTTCCACT-CTAACTTCAGAGAAATAAGATCCGCTGTCTTTAGTCTGCTCCGTTGTAAC
130 TAATTTGTTCCACTAC-AACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAAC
*
36911119 TTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGTAACTTCAGGAAGATAAGATCCGCC
194 TTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCC
*
36911184 ATAATTTGTATATTTAATCTATTCCACTGTAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCT
259 ATAATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCT
* **
36911249 GCTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGCAACTTCAAGAA
324 ACTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAA
*
36911314 GATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCG
389 GATAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCG
* *
36911379 CTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACT
454 CTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACT
* *
36911444 ACAACTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATGTTCTAC
519 ACAACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
*
36911497 TGCAACTTCAGAGAAATAAGATCTGCTGTCTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTT-AAGGAGATAAG
*
36911561 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTAGAGCTT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTT
*
36911626 TAATTTGTTCCACTACAACTTCAGGGAAATAATATCCCCTGTCTTCAGTCTGCTCCGTTGTAACT
130 TAATTTGTTCCACTACAACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAACT
* * *
36911691 TTAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTGCAACTTTAGGAAGATAAGATTCGCCA
195 TTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCCA
*
36911756 TAATTTGTATATTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTA
260 TAATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTA
*
36911821 CTCCGATGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAG
325 CTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAG
* *
36911886 ATAAGATCCATCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGC
390 ATAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGC
36911951 TGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTA
455 TGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTA
*
36912016 CAACTTCAGGAAGAGAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCAC
520 CAACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
*
36912068 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAAC-TTAAGGAGATAAG
* *
36912133 GCTGGTGGCTTCAATCTGCTTCACTGCCACTTTAGGAAGATAAGATCGGCCATAATTT-GTAGCT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAG-AGCT
* * * * *
36912197 TTAATCTGCTCCACTACAATTTTAGGGAAAT-ATGATCCGTTGTCTTCAGTCTGCTCCG
129 TTAATTTGTTCCACTACAACTTCAGGGAAATAAT-ATCCGCTGTCTTCAGTCTGCTCCG
36912255 CTACAACTTC
Statistics
Matches: 705, Mismatches: 46, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
571 560 0.79
572 143 0.20
573 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (571 bp):
TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTAAGGAGATAAGG
CTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTTT
AATTTGTTCCACTACAACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAACTT
TAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCCAT
AATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTAC
TCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAGA
TAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCT
GTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTAC
AACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
Found at i:36912132 original size:45 final size:45
Alignment explanation
Indices: 36912051--36912179 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 45
36912041 ATAATTTGTA
* * * * *
36912051 GCTTTAATATGTTCCACTGCAACTTCAGAGAAATAAGATCTGATG
1 GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
* * * * *
36912096 TCTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
* *
36912140 GCTTCAATCTGCTT-CACTGCCACTTTAGGAAGATAAGATC
1 GCTTCAATCTG-TTCCACTGCAACTTTAGGGAGATAAGATC
36912180 GGCCATAATT
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
44 34 0.52
45 32 0.48
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (45 bp):
GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
Found at i:36912319 original size:143 final size:143
Alignment explanation
Indices: 36910954--36912275 Score: 1869
Period size: 143 Copynumber: 9.3 Consensus size: 143
36910944 AGGCTAATGG
* * * * *
36910954 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAGTGGCTTCAATCTGCTTCACTGTAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * *
36911019 CTTTAGGAAGATAAGATCCGTCATAATTTAG-AGCTTTAATTTGTTCCACT-CTAACTTCAGAGA
66 CTTCAGGAAGATAAGATCCGCCATAATTT-GTAGCTTTAATCTGTTCCACTGC-AACTTCAGGGA
36911082 AATAAGATCCGCTGT
129 AATAAGATCCGCTGT
* * * * * * *
36911097 CTTTAGTCTGCTCCGTTGTAACTTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGTAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
** * * *
36911162 CTTCAGGAAGATAAGATCCGCCATAATTTGTATATTTAATCTATTCCACTGTAACTTCAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
36911227 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
36911240 CTTCAGTCTGCTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * *
36911305 CTTCAAGAAGATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
36911370 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
36911383 CTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * *
36911448 CTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATGTTCTACTGCAACTTCAGAGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
*
36911513 TAAGATCTGCTGT
131 TAAGATCCGCTGT
* *
36911526 CTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* *
36911590 CTTCAGGAAGATAAGATCCGCCATAATTTAG-AGCTTTAATTTGTTCCACTACAACTTCAGGGAA
66 CTTCAGGAAGATAAGATCCGCCATAATTT-GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAA
* *
36911654 ATAATATCCCCTGT
130 ATAAGATCCGCTGT
* * * *
36911668 CTTCAGTCTGCTCCGTTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * ** *
36911733 CTTTAGGAAGATAAGATTCGCCATAATTTGTATATTTAATCTGTTCCACTGCAACTTCAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
36911798 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
36911811 CTTCAGTCTACTCCGATGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* ** *
36911876 CTTCAAGAAGATAAGATCCATCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
36911941 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * * * *
36911954 CTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * *
36912019 CTTCAGGAAGAGAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCACTGCAACTTCAGAGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
* *
36912084 TAAGATCTGATGT
131 TAAGATCCGCTGT
* * *
36912097 CTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCCA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * * * *
36912162 CTTTAGGAAGATAAGATCGGCCATAATTTGTAGCTTTAATCTGCTCCACTACAATTTTAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
* *
36912227 TATGATCCGTTGT
131 TAAGATCCGCTGT
* *
36912240 CTTCAGTCTGCTCCGCTACAACTTCAGGGAGGTAAG
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
36912276 ACTTGTATCT
Statistics
Matches: 1049, Mismatches: 125, Indels: 10
0.89 0.11 0.01
Matches are distributed among these distances:
142 130 0.12
143 919 0.88
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (143 bp):
CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
TAAGATCCGCTGT
Found at i:36914583 original size:21 final size:22
Alignment explanation
Indices: 36914559--36914599 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
36914549 CGCCTTGGCC
36914559 TCTCATTTT-TTTCCTTTTTCT
1 TCTCATTTTCTTTCCTTTTTCT
* *
36914580 TCTCTTTTTCTTTTCTTTTT
1 TCTCATTTTCTTTCCTTTTT
36914600 TAATCATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (22 bp):
TCTCATTTTCTTTCCTTTTTCT
Found at i:36914588 original size:11 final size:11
Alignment explanation
Indices: 36914559--36914599 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
36914549 CGCCTTGGCC
36914559 TCTCATTTTT-T
1 TCTC-TTTTTCT
36914570 TC-CTTTTTCT
1 TCTCTTTTTCT
36914580 TCTCTTTTTCT
1 TCTCTTTTTCT
*
36914591 TTTCTTTTT
1 TCTCTTTTT
36914600 TAATCATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
11 18 0.67
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (11 bp):
TCTCTTTTTCT
Found at i:36919651 original size:16 final size:17
Alignment explanation
Indices: 36919623--36919656 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
36919613 ATACAAATTA
36919623 TATATATAAAATAGTAT
1 TATATATAAAATAGTAT
*
36919640 TATATA-AAAATATTAT
1 TATATATAAAATAGTAT
36919656 T
1 T
36919657 GATTTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATATAAAATAGTAT
Found at i:36919837 original size:23 final size:23
Alignment explanation
Indices: 36919794--36919839 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
36919784 GAAAAAGAAT
*
36919794 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
36919817 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
36919840 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:36919842 original size:19 final size:18
Alignment explanation
Indices: 36919818--36919856 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
36919808 ATAATAAAAT
*
36919818 AAAATAATGTACATACATA
1 AAAATAA-GTAAATACATA
*
36919837 AAAATAAGTAAATATATA
1 AAAATAAGTAAATACATA
36919855 AA
1 AA
36919857 CTAATAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAATAAGTAAATACATA
Found at i:36924191 original size:6 final size:7
Alignment explanation
Indices: 36924172--36924199 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
36924162 GTCTTAATTC
36924172 TTAAAAA
1 TTAAAAA
36924179 TTAAAAA
1 TTAAAAA
36924186 TTAAAAA
1 TTAAAAA
36924193 TTAAAAA
1 TTAAAAA
36924200 CTTCATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:36927052 original size:2 final size:2
Alignment explanation
Indices: 36927045--36927069 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36927035 TATGTATATG
36927045 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
36927070 CGCAAGCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:36943935 original size:30 final size:30
Alignment explanation
Indices: 36943901--36943967 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
36943891 TTAACCCCTC
36943901 AAATTTTGAGTATTTACTCTTGGGCAACAA
1 AAATTTTGAGTATTTACTCTTGGGCAACAA
*
36943931 AAATTTTGAGTTTTTACTCTTGGGCAACAA
1 AAATTTTGAGTATTTACTCTTGGGCAACAA
36943961 AAATTTT
1 AAATTTT
36943968 CTTACTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (30 bp):
AAATTTTGAGTATTTACTCTTGGGCAACAA
Found at i:36949330 original size:18 final size:18
Alignment explanation
Indices: 36949307--36949349 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
36949297 ATTAAAATGT
* *
36949307 AAAAATTAAATTAAAACA
1 AAAAATAAAAATAAAACA
*
36949325 AAAAATAAAAATAAAAGA
1 AAAAATAAAAATAAAACA
36949343 AAAAATA
1 AAAAATA
36949350 GCTAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (18 bp):
AAAAATAAAAATAAAACA
Found at i:36953946 original size:22 final size:24
Alignment explanation
Indices: 36953921--36953965 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
36953911 AATTCATTGC
36953921 ATATTCAC-ATCA-TTAGCATGAT
1 ATATTCACTATCACTTAGCATGAT
*
36953943 ATATTCACTATCACTTCGCATGA
1 ATATTCACTATCACTTAGCATGA
36953966 ATAACATGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 4 0.20
24 8 0.40
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (24 bp):
ATATTCACTATCACTTAGCATGAT
Found at i:36957867 original size:13 final size:13
Alignment explanation
Indices: 36957849--36957873 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36957839 CCCGATGGAG
36957849 ATACACTCGGTTT
1 ATACACTCGGTTT
36957862 ATACACTCGGTT
1 ATACACTCGGTT
36957874 GAATAAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (13 bp):
ATACACTCGGTTT
Found at i:36959979 original size:109 final size:108
Alignment explanation
Indices: 36959808--36960213 Score: 473
Period size: 109 Copynumber: 3.7 Consensus size: 108
36959798 TTTACCTTTA
* * *
36959808 AGGGTAATTCGGTAATTTTACCCTTCGAGGGTATCTCTA-TAATTTTACCCTTTAAGGGTATTTC
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-AGTAATTTTACCCTTTAAGGGTATTTC
* * * *
36959872 GGTAATGTATACACTTCTACGGTATTTCGATAATTTTTCCCTTCG
65 GATAAT-TTTACCCTTCTAGGGTATTTCGATAATTTTTCCCTTCG
*
36959917 AGGGTATTTC-AGTAATTTTACCCTTCGAGGGTATTTC-GATAATTTTA-CCTTTCAAGGCTATT
1 AGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTT-AAGGGTATT
* * * *
36959979 TCAATAATTTTACCCTTCAAGGGTATTTCGATAATTTTTACCTTTTG
63 TCGATAATTTTACCCTTCTAGGGTATTTCGATAATTTTT-CCCTTCG
* * * *
36960026 AAGGTATTTCGATAATTTTGCCCTTCAAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTCG
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
* *
36960091 ATAATTTTTACCCTT-TGAGGGTATTTCTATAATTTTACCCTTCG
66 ATAA-TTTTACCCTTCT-AGGGTATTTCGATAATTTTTCCCTTCG
* * * * *
36960135 AGGGTATTTCGATAATTTTATCCTTCGAGGATATTTCAGTAATTTTACCCTTCAGGGGTAATTC-
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
*
36960199 AGTCATTTTACCCTT
66 A-TAATTTTACCCTT
36960214 TGGAGGTAAT
Statistics
Matches: 253, Mismatches: 33, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
108 43 0.17
109 175 0.69
110 35 0.14
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.43
Consensus pattern (108 bp):
AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
ATAATTTTACCCTTCTAGGGTATTTCGATAATTTTTCCCTTCG
Found at i:36960019 original size:82 final size:80
Alignment explanation
Indices: 36959796--36960186 Score: 471
Period size: 82 Copynumber: 4.8 Consensus size: 80
36959786 TATAGAGACC
* * * *
36959796 ATTTTA-CCTTTAAGGGTAATTCGGTAATTTTACCCTTCGAGGGTATCTCTATAATTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAATTTTACCCTT
* *
36959860 TAAGGGTATTTCGGTA
65 TGAGGGTATTTCGATA
* * * * *
36959876 ATGTATACACTTCTACGGTATTTCGATAATTTTTCCCTTCGAGGGTATTTCAGTAATTTTACCCT
1 AT-TTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCA-TAATTTTACCCT
*
36959941 TCGAGGGTATTTCGATA
64 TTGAGGGTATTTCGATA
* * * * *
36959958 ATTTTACCTTTCAAGGCTATTTCAATAATTTTACCCTTCAAGGGTATTTCGATAATTTTTACCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAA-TTTTACCCT
*
36960023 TTGAAGGTATTTCGATA
64 TTGAGGGTATTTCGATA
* *
36960040 ATTTTGCCCTTCAAGGGTATTTC-AGTAATTTTACCCTTTGAGGGTATTTCGATAATTTTTACCC
1 ATTTTACCCTTCAAGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTC-ATAA-TTTTACCC
*
36960104 TTTGAGGGTATTTCTATA
63 TTTGAGGGTATTTCGATA
* * *
36960122 ATTTTACCCTTCGAGGGTATTTCGATAATTTTATCCTTCGAGGATATTTCAGTAATTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCA-TAATTTTACCCTT
36960187 CAGGGGTAAT
Statistics
Matches: 266, Mismatches: 37, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
80 2 0.01
81 58 0.22
82 205 0.77
83 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.44
Consensus pattern (80 bp):
ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCATAATTTTACCCTTT
GAGGGTATTTCGATA
Found at i:36960256 original size:27 final size:27
Alignment explanation
Indices: 36959796--36960253 Score: 423
Period size: 27 Copynumber: 16.9 Consensus size: 27
36959786 TATAGAGACC
* * *
36959796 ATTTTA-CCTTTAAGGGTAATTCGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
36959822 ATTTTACCCTTCGAGGGTATCTCTATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* *
36959849 ATTTTACCCTTTAAGGGTATTTCGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
36959876 ATGTATACACTTCT-ACGGTATTTCGATA
1 AT-TTTACCCTT-TGAGGGTATTTCGATA
* *
36959904 ATTTTTCCCTTCGAGGGTATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
*
36959931 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
36959958 ATTTTA-CCTTTCAAGGCTATTTCAATA
1 ATTTTACCCTTT-GAGGGTATTTCGATA
**
36959985 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* *
36960012 ATTTTTACCTTTTGAAGGTATTTCGATA
1 A-TTTTACCCTTTGAGGGTATTTCGATA
* **
36960040 ATTTTGCCCTTCAAGGGTATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
36960067 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
*
36960094 ATTTTTACCCTTTGAGGGTATTTCTATA
1 A-TTTTACCCTTTGAGGGTATTTCGATA
*
36960122 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
36960149 ATTTTATCCTTCGAGGATATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
* * *
36960176 ATTTTACCC-TTCAGGGGTAATTC-AGTC
1 ATTTTACCCTTTGA-GGGTATTTCGA-TA
* *
36960203 ATTTTACCCTTTG-GAGGTAATTT-GGTC
1 ATTTTACCCTTTGAG-GGT-ATTTCGATA
*
36960230 ATTTTACCCTTTGAGGGTAATTCG
1 ATTTTACCCTTTGAGGGTATTTCG
36960254 GTCCTTTCAC
Statistics
Matches: 357, Mismatches: 55, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
26 19 0.05
27 255 0.71
28 82 0.23
29 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTTGAGGGTATTTCGATA
Found at i:36960265 original size:27 final size:26
Alignment explanation
Indices: 36960067--36960293 Score: 139
Period size: 27 Copynumber: 8.4 Consensus size: 26
36960057 TATTTCAGTA
* * *
36960067 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* ** *
36960094 ATTTTTACCCTTTGAGGGTATTTCTATA
1 A-TTTTACCCTTTG-GGGTAATTCGGTC
* * * *
36960122 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* * * * * *
36960149 ATTTTATCCTTCGAGGATATTTCAGTA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* *
36960176 ATTTTACCCTTCAGGGGTAATTCAGTC
1 ATTTTACCCTT-TGGGGTAATTCGGTC
*
36960203 ATTTTACCCTTTGGAGGTAATTTGGTC
1 ATTTTACCCTTTGG-GGTAATTCGGTC
36960230 ATTTTACCCTTTGAGGGTAATTCGGTC
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* * ** * *
36960257 CTTTCACCCATCGGGGGTAGTTCGATC
1 ATTTTACCC-TTTGGGGTAATTCGGTC
36960284 ATTTTACCCT
1 ATTTTACCCT
36960294 CGATTCGCAT
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 138 0.81
28 30 0.18
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTTGGGGTAATTCGGTC
Found at i:36967209 original size:28 final size:27
Alignment explanation
Indices: 36967145--36967210 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
36967135 GGGCTCTATT
**
36967145 CAGTGACAGTACAGTGAGGGCCTTCGCC
1 CAGT-ACAGTACAGTGAGGGCCTTAACC
* * *
36967173 CAATTCAGTAGCAGTGTGGGCCTTAACC
1 CAGTACAGTA-CAGTGAGGGCCTTAACC
36967201 CAGTACAGTA
1 CAGTACAGTA
36967211 TCGTTACAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (27 bp):
CAGTACAGTACAGTGAGGGCCTTAACC
Found at i:36967584 original size:27 final size:27
Alignment explanation
Indices: 36967551--36967669 Score: 84
Period size: 26 Copynumber: 4.4 Consensus size: 27
36967541 GATATAGAGA
36967551 TAATTTTACCCCTATA-GGGTATTACGG
1 TAATTTTACCCCT-TAGGGGTATTACGG
* *
36967578 TGATTTTA-CCCTTAGGGGTATTTCGG
1 TAATTTTACCCCTTAGGGGTATTACGG
* * *
36967604 TAATTATA-CCCTTCGAGGGTATTTA-AG
1 TAATTTTACCCCTTAG-GGGTA-TTACGG
* * * * *
36967631 TAATTTTACCCTTTGGGGGAATTTCGC
1 TAATTTTACCCCTTAGGGGTATTACGG
36967658 TAAGTTTTACCC
1 TAA-TTTTACCC
36967670 TTTGAAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
25 2 0.03
26 28 0.39
27 27 0.38
28 15 0.21
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACCCCTTAGGGGTATTACGG
Found at i:36967596 original size:26 final size:26
Alignment explanation
Indices: 36967551--36967708 Score: 97
Period size: 27 Copynumber: 5.8 Consensus size: 26
36967541 GATATAGAGA
36967551 TAATTTTACCCCTATA-GGGTATTACGG
1 TAATTTTA-CCCT-TAGGGGTATTACGG
* *
36967578 TGATTTTACCCTTAGGGGTATTTCGG
1 TAATTTTACCCTTAGGGGTATTACGG
* * *
36967604 TAATTATACCCTTCGAGGGTATTTA-AG
1 TAATTTTACCCTTAG-GGGTA-TTACGG
* * * *
36967631 TAATTTTACCCTTTGGGGGAATTTCGC
1 TAATTTTACCC-TTAGGGGTATTACGG
* * *
36967658 TAAGTTTTACCCTTTGAAGGTATTTA-AG
1 TAA-TTTTACCCTTAG-GGGTA-TTACGG
*
36967686 TAATTTTACCCTTCGAGGGTATT
1 TAATTTTACCCTTAG-GGGTATT
36967709 TTTGTAATTT
Statistics
Matches: 102, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
25 2 0.02
26 30 0.29
27 49 0.48
28 19 0.19
29 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (26 bp):
TAATTTTACCCTTAGGGGTATTACGG
Found at i:36967680 original size:55 final size:54
Alignment explanation
Indices: 36967580--36967698 Score: 168
Period size: 55 Copynumber: 2.2 Consensus size: 54
36967570 TATTACGGTG
* * *
36967580 ATTTTACCC-TTAGGGGTATTTCGGTAATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTTAGGGGAATTTCGCTAATTATACCCTTCGAAGGTATTTAAGTA
* * *
36967633 ATTTTACCCTTTGGGGGAATTTCGCTAAGTTTTACCCTTTGAAGGTATTTAAGTA
1 ATTTTACCCTTTAGGGGAATTTCGCTAA-TTATACCCTTCGAAGGTATTTAAGTA
36967688 ATTTTACCCTT
1 ATTTTACCCTT
36967699 CGAGGGTATT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 9 0.16
54 15 0.26
55 34 0.59
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTTTAGGGGAATTTCGCTAATTATACCCTTCGAAGGTATTTAAGTA
Found at i:36967706 original size:27 final size:26
Alignment explanation
Indices: 36967580--36967812 Score: 166
Period size: 27 Copynumber: 8.7 Consensus size: 26
36967570 TATTACGGTG
* *
36967580 ATTTTACCCTTAG-GGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
*
36967606 ATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
* * * *
36967633 ATTTTACCCTTTGGGGGAATTTCGCTA
1 ATTTTACCCTTCGAGGGTATTTAG-TA
* *
36967660 AGTTTTACCCTTTGAAGGTATTTAAGTA
1 A-TTTTACCCTTCGAGGGTATTT-AGTA
*
36967688 ATTTTACCCTTCGAGGGTATTTTTGTA
1 ATTTTACCCTTCGAGGGTA-TTTAGTA
* * * *
36967715 ATTTTATCGTTCAAGGGTATTTGGGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
* * * *
36967742 ATTCTACCCTTCGA-GGTAATTCGATC
1 ATTTTACCCTTCGAGGGTATTTAG-TA
* **
36967768 ATTTTACCCTTCGAAGGTAATTT-GGC
1 ATTTTACCCTTCGAGGGT-ATTTAGTA
*
36967794 ATTTTACCCTTCGGGGGTA
1 ATTTTACCCTTCGAGGGTA
36967813 ATTCGGTCCT
Statistics
Matches: 166, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.01
26 52 0.31
27 84 0.51
28 27 0.16
29 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTAGTA
Found at i:36967744 original size:54 final size:53
Alignment explanation
Indices: 36967580--36967809 Score: 184
Period size: 54 Copynumber: 4.3 Consensus size: 53
36967570 TATTACGGTG
* * *
36967580 ATTTTACCCTTAGGGGTA-TTTCGGTAATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTCGGGGTATTTTC-GTAATTTTACCCTTCAAGGGTATTTAAGTA
* * * *
36967633 ATTTTACCCTTTGGGGGAATTTCGCTAAGTTTTACCCTTTGAA-GGTATTTAAGTA
1 ATTTTACCCTTCGGGGTATTTTCG-TAA-TTTTACCC-TTCAAGGGTATTTAAGTA
* * * **
36967688 ATTTTACCCTTCGAGGGTATTTTTGTAATTTTATCGTTCAAGGGTATTTGGGTA
1 ATTTTACCCTTCG-GGGTATTTTCGTAATTTTACCCTTCAAGGGTATTTAAGTA
* * * * **
36967742 ATTCTACCCTTCGAGGTA-ATTCGATCATTTTACCCTTCGAA-GGTAATTT--GGC
1 ATTTTACCCTTCGGGGTATTTTCG-TAATTTTACCCTTC-AAGGGT-ATTTAAGTA
36967794 ATTTTACCCTTCGGGG
1 ATTTTACCCTTCGGGG
36967810 GTAATTCGGT
Statistics
Matches: 143, Mismatches: 25, Indels: 19
0.76 0.13 0.10
Matches are distributed among these distances:
52 18 0.13
53 39 0.27
54 41 0.29
55 34 0.24
56 11 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (53 bp):
ATTTTACCCTTCGGGGTATTTTCGTAATTTTACCCTTCAAGGGTATTTAAGTA
Found at i:36967775 original size:26 final size:25
Alignment explanation
Indices: 36967746--36967829 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 25
36967736 TGGGTAATTC
36967746 TACCCTTCGAGGTAATTCGATCATTT
1 TACCCTTCGAGGTAATTCG-TCATTT
* *
36967772 TACCCTTCGAAGGTAATTTGGCATTT
1 TACCCTTCG-AGGTAATTCGTCATTT
* *
36967798 TACCCTTCGGGGGTAATTCGGTCCTTT
1 TACCCTTC-GAGGTAATTC-GTCATTT
36967825 TACCC
1 TACCC
36967830 AATCACAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 29 0.59
27 20 0.41
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (25 bp):
TACCCTTCGAGGTAATTCGTCATTT
Found at i:36976059 original size:5 final size:6
Alignment explanation
Indices: 36976042--36976068 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
36976032 ACAATTCAAA
36976042 TATTTT TATTTT TATTTT TATTTT TAT
1 TATTTT TATTTT TATTTT TATTTT TAT
36976069 ATTTGGGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:36979261 original size:16 final size:17
Alignment explanation
Indices: 36979240--36979271 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36979230 GTGAACTCCC
36979240 TTTCTTGGCG-ATCCTA
1 TTTCTTGGCGAATCCTA
36979256 TTTCTTGGCGAATCCT
1 TTTCTTGGCGAATCCT
36979272 CCCTGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (17 bp):
TTTCTTGGCGAATCCTA
Found at i:36983832 original size:21 final size:23
Alignment explanation
Indices: 36983796--36983843 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
36983786 ATTGTTCCCT
36983796 TTTAGTTATCTTTAGTACA-TAA
1 TTTAGTTATCTTTAGTACAGTAA
*
36983818 TTTAG-TATTTTTAGTACAGTAA
1 TTTAGTTATCTTTAGTACAGTAA
36983840 TTTA
1 TTTA
36983844 CATTTTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (23 bp):
TTTAGTTATCTTTAGTACAGTAA
Found at i:36983848 original size:21 final size:21
Alignment explanation
Indices: 36983806--36983849 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
36983796 TTTAGTTATC
*
36983806 TTTAGTACATAATTTAGTATT
1 TTTAGTACATAATTTAGCATT
36983827 TTTAGTACAGTAATTTA-CATT
1 TTTAGTACA-TAATTTAGCATT
36983848 TT
1 TT
36983850 ATGACTCAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (21 bp):
TTTAGTACATAATTTAGCATT
Found at i:36987141 original size:30 final size:30
Alignment explanation
Indices: 36987103--36987289 Score: 170
Period size: 29 Copynumber: 6.3 Consensus size: 30
36987093 GCTATCGATC
36987103 ATGAAAAGGGATGGTGACGACCATC-AATT
1 ATGAAAAGGGATGGTGACGACCATCGAATT
*
36987132 ATGGAAAA-GGATGGTGACGATCATCG-ATT
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
* * *
36987161 ATGGGAAA-GGATGGTGACGACCGTCGAATA
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
* * *
36987191 ATGAAAAGGGATGGCT-TCGGCTATCG-ATCT
1 ATGAAAAGGGATGG-TGACGACCATCGAAT-T
*
36987221 ATGAAAAGGTATGGTGACGACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCGAATT
* * * * *
36987251 ATAAAAAAAGGATGGTGGCAACCATCAAATT
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
36987282 ATGAAAAG
1 ATGAAAAG
36987290 AGATAGCTTC
Statistics
Matches: 126, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
29 51 0.40
30 48 0.38
31 27 0.21
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.21
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAATT
Found at i:36987260 original size:32 final size:31
Alignment explanation
Indices: 36987224--36987288 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
36987214 TCGATCTATG
* *
36987224 AAAAGGTATGGTGACGACCATCGAATTATAAA
1 AAAAGG-ATGGTGACAACCATCAAATTATAAA
* *
36987256 AAAAGGATGGTGGCAACCATCAAATTATGAA
1 AAAAGGATGGTGACAACCATCAAATTATAAA
36987287 AA
1 AA
36987289 GAGATAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.20
Consensus pattern (31 bp):
AAAAGGATGGTGACAACCATCAAATTATAAA
Found at i:36987299 original size:91 final size:88
Alignment explanation
Indices: 36987135--36987306 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 88
36987125 ATCAATTATG
* *** * * * *
36987135 GAAAAGGATGGTGACGATCATCGATTATGGGAAAGGATGGTGACGACCGTCGAATAATGAAAAGG
1 GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
* *
36987200 GATGGCTTCGGCTATCGATCTAT
66 GATAGCTTCAGCTATCGATCTAT
* *
36987223 GAAAAGGTATGGTGACGACCATCGAATTATAAAAAAAGGATGGTGGCAACCATCAAATTATGAAA
1 GAAAAGG-ATGGTGACGACCATCG-ATTAT-AAAAAAGGATGGTGACAACCATCAAATAATGAAA
36987288 AGAGATAGCTTCAGCTATC
63 AGAGATAGCTTCAGCTATC
36987307 AAACTTCGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
88 7 0.10
89 15 0.22
90 5 0.07
91 42 0.61
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (88 bp):
GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
GATAGCTTCAGCTATCGATCTAT
Found at i:36987318 original size:91 final size:88
Alignment explanation
Indices: 36987135--36987342 Score: 204
Period size: 91 Copynumber: 2.3 Consensus size: 88
36987125 ATCAATTATG
* *** * * * *
36987135 GAAAAGGATGGTGACGATCATCGATTATGGGAAAGGATGGTGACGACCGTCGAATAATGAAAAGG
1 GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
* * * *
36987200 GATGGCTTCGGCTATCGATCTAT
66 GATAGCTTCAGCTATCAAACTAT
* *
36987223 GAAAAGGTATGGTGACGACCATCGAATTATAAAAAAAGGATGGTGGCAACCATCAAATTATGAAA
1 GAAAAGG-ATGGTGACGACCATCG-ATTAT-AAAAAAGGATGGTGACAACCATCAAATAATGAAA
36987288 AGAGATAGCTTCAGCTATCAAACT-T
63 AGAGATAGCTTCAGCTATCAAACTAT
* *
36987313 CGAAAAGGGATGG-GTCAACCATCGTATTAT
1 -GAAAA-GGATGGTGACGACCATCG-ATTAT
36987343 TACCTCATGT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
88 7 0.07
89 15 0.15
90 20 0.20
91 54 0.55
92 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (88 bp):
GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
GATAGCTTCAGCTATCAAACTAT
Found at i:37003663 original size:27 final size:27
Alignment explanation
Indices: 37003625--37003735 Score: 177
Period size: 27 Copynumber: 4.1 Consensus size: 27
37003615 GATTGAAATA
*
37003625 CCCCTATAGGGTAAAATGACCGTAATG
1 CCCCTATAGGGTAAAATGACCATAATG
* *
37003652 CCCCTGTAGGGTAAAATGACCATAATA
1 CCCCTATAGGGTAAAATGACCATAATG
* *
37003679 CCCCTATAGAGTAAAATGACCGTAATG
1 CCCCTATAGGGTAAAATGACCATAATG
37003706 CCCCTATAGGGTAAAATGACCATAATG
1 CCCCTATAGGGTAAAATGACCATAATG
37003733 CCC
1 CCC
37003736 TAGTGGGTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCATAATG
Found at i:37003703 original size:54 final size:54
Alignment explanation
Indices: 37003621--37003731 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
37003611 TCTGGATTGA
* *
37003621 AATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCAT
1 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
37003675 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
1 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
37003729 AAT
1 AAT
37003732 GCCCTAGTGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (54 bp):
AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
Found at i:37003947 original size:26 final size:26
Alignment explanation
Indices: 37003918--37003975 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
37003908 TTGGCCACAT
37003918 ATACTATT-AGTAGCAGCTTTGCTGCG
1 ATACTATTGA-TAGCAGCTTTGCTGCG
* *
37003944 ATACTGTTGATGGCAGCTTTGCTGCG
1 ATACTATTGATAGCAGCTTTGCTGCG
37003970 ATACTA
1 ATACTA
37003976 GTGCTGGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (26 bp):
ATACTATTGATAGCAGCTTTGCTGCG
Found at i:37004022 original size:32 final size:32
Alignment explanation
Indices: 37003980--37004156 Score: 162
Period size: 32 Copynumber: 5.5 Consensus size: 32
37003970 ATACTAGTGC
* *
37003980 TGGCTTTGTGCCGATCATAGTACTGTTACTGG
1 TGGCTGTGTGCCGATCATAGTACTGTTACTGA
* *
37004012 TGGCTGTGTGCCGGTCAT-TTCACTGTTACTGA
1 TGGCTGTGTGCCGATCATAGT-ACTGTTACTGA
** ** *
37004044 TGGCTGTGTGCCGATCATAACACTACTATTGA
1 TGGCTGTGTGCCGATCATAGTACTGTTACTGA
* * *
37004076 TGGCTTTGTGCCTATCAT-GTTACCGTTACTGA
1 TGGCTGTGTGCCGATCATAG-TACTGTTACTGA
* *
37004108 TGGCTGTGTGCCGATCGTA-TCACTGTTACTAA
1 TGGCTGTGTGCCGATCATAGT-ACTGTTACTGA
* *
37004140 TGGCTTTGTGCCAATCA
1 TGGCTGTGTGCCGATCA
37004157 CATTATTGTA
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
31 2 0.02
32 112 0.98
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (32 bp):
TGGCTGTGTGCCGATCATAGTACTGTTACTGA
Found at i:37004060 original size:64 final size:63
Alignment explanation
Indices: 37003980--37004156 Score: 194
Period size: 64 Copynumber: 2.8 Consensus size: 63
37003970 ATACTAGTGC
* * * * *
37003980 TGGCTTTGTGCCGATCATAGTACTGTTACTGGTGGCTGTGTGCCGGTCAT-TTCACTGTTACTGA
1 TGGCTGTGTGCCGATCATA-TACTGTTACTGATGGCTTTGTGCCGATCATGTT-ACCGTTACTGA
* ** * *
37004044 TGGCTGTGTGCCGATCATAACACTACTATTGATGGCTTTGTGCCTATCATGTTACCGTTACTGA
1 TGGCTGTGTGCCGATCAT-ATACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGA
* * *
37004108 TGGCTGTGTGCCGATCGTATCACTGTTACTAATGGCTTTGTGCCAATCA
1 TGGCTGTGTGCCGATCATAT-ACTGTTACTGATGGCTTTGTGCCGATCA
37004157 CATTATTGTA
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
63 1 0.01
64 89 0.96
65 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (63 bp):
TGGCTGTGTGCCGATCATATACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGA
Found at i:37004112 original size:96 final size:96
Alignment explanation
Indices: 37003971--37004156 Score: 257
Period size: 96 Copynumber: 1.9 Consensus size: 96
37003961 TTTGCTGCGA
* * * * *
37003971 TACTAGTGCTGGCTTTGTGCCGATCATAGTACTGTTACTGGTGGCTGTGTGCCGGTCATTTCACT
1 TACTAGTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTGTGTGCCGATCATATCACT
* *
37004036 GTTACTGATGGCTGTGTGCCGATCATAACAC
66 GTTACTAATGGCTGTGTGCCAATCATAACAC
* * *
37004067 TACTATTGATGGCTTTGTGCCTATCAT-GTTACCGTTACTGATGGCTGTGTGCCGATCGTATCAC
1 TACTAGTGATGGCTTTGTGCCGATCATAG-TACCGTTACTGATGGCTGTGTGCCGATCATATCAC
*
37004131 TGTTACTAATGGCTTTGTGCCAATCA
65 TGTTACTAATGGCTGTGTGCCAATCA
37004157 CATTATTGTA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 77 0.99
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.36
Consensus pattern (96 bp):
TACTAGTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTGTGTGCCGATCATATCACT
GTTACTAATGGCTGTGTGCCAATCATAACAC
Found at i:37007180 original size:20 final size:20
Alignment explanation
Indices: 37007121--37007261 Score: 81
Period size: 20 Copynumber: 7.1 Consensus size: 20
37007111 AATTACTGAA
* * *
37007121 TGATTGCATTTACGTGTCCC
1 TGATTGCACTTAGGTGCCCC
* * *
37007141 TGCTTGTACCTT-GGTACCCC
1 TGATTGCA-CTTAGGTGCCCC
*
37007161 TGATTGCACTTATGTGCCCC
1 TGATTGCACTTAGGTGCCCC
** * * * *
37007181 TCTTTGTACTTCGGTACCCT
1 TGATTGCACTTAGGTGCCCC
*
37007201 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTAGGTGCCCC
** * *
37007221 TCTTTGTACTTCA-GTACCCC
1 TGATTGCACTT-AGGTGCCCC
37007241 TGATTGCACTT-GGTGCCCC
1 TGATTGCACTTAGGTGCCCC
37007260 TG
1 TG
37007262 TTATGCATCT
Statistics
Matches: 85, Mismatches: 32, Indels: 9
0.67 0.25 0.07
Matches are distributed among these distances:
19 11 0.13
20 71 0.84
21 3 0.04
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.37
Consensus pattern (20 bp):
TGATTGCACTTAGGTGCCCC
Found at i:37007188 original size:40 final size:40
Alignment explanation
Indices: 37007121--37007260 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
37007111 AATTACTGAA
* *
37007121 TGATTGCATTTACGTGTCCCTGC-TTGTACCTT-GGTACCCC
1 TGATTGCACTTACGTGCCCCT-CTTTGTA-CTTCGGTACCCC
* *
37007161 TGATTGCACTTATGTGCCCCTCTTTGTACTTCGGTACCCT
1 TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
*
37007201 TGATTGCACTTACGTGCCCCTCTTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
*
37007241 TGATTGCACTT-GGTGCCCCT
1 TGATTGCACTTACGTGCCCCT
37007261 GTTATGCATC
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 12 0.13
40 78 0.87
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.37
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
Found at i:37010339 original size:91 final size:91
Alignment explanation
Indices: 37010184--37010362 Score: 349
Period size: 91 Copynumber: 2.0 Consensus size: 91
37010174 ACTAACATGT
*
37010184 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACCATACACA
1 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
37010249 CATACTATGAAACTTTATTTTCCTGA
66 CATACTATGAAACTTTATTTTCCTGA
37010275 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
1 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
37010340 CATACTATGAAACTTTATTTTCC
66 CATACTATGAAACTTTATTTTCC
37010363 GACACGAGCT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (91 bp):
GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
CATACTATGAAACTTTATTTTCCTGA
Done.