Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 117 of 161
Found at i:37011479 original size:90 final size:88
Alignment explanation
Indices: 37011310--37011479 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 88
37011300 CGTTACACTA
* ** * * *
37011310 TGGATCAGCACATAACACCACCATTATAATCAATTATATTCGGTGGAATCAGCATATAGCAACCA
1 TGGATCAGCACATAACACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAACCA
**
37011375 CCTTTATTTTCAATGATTTCCGG
66 CCTTTATAATCAATGATTTCCGG
* * *
37011398 TGGAGTCAGCACATAGCTACCACCTTTATAATCAATGGTACCCGGTGGAATCAGAACATAACAAC
1 TGGA-TCAGCACATAAC-ACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAAC
37011463 CACCTTTATAATCAATG
64 CACCTTTATAATCAATG
37011480 GTACCCGGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
88 4 0.06
89 11 0.16
90 54 0.78
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (88 bp):
TGGATCAGCACATAACACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAACCA
CCTTTATAATCAATGATTTCCGG
Found at i:37011480 original size:45 final size:45
Alignment explanation
Indices: 37011313--37011488 Score: 201
Period size: 45 Copynumber: 3.9 Consensus size: 45
37011303 TACACTATGG
* * **
37011313 ATCAGCACATAAC-ACCACCATTATAATCAATTATATTCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* * ** **
37011357 ATCAGCATATAGCAACCACCTTTATTTTCAATGATTTCCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* * * *
37011402 GTCAGCACATAGCTACCACCTTTATAATCAATGGTACCCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* *
37011447 ATCAGAACATAACAACCACCTTTATAATCAATGGTACCCGGT
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGT
37011489 ACACGTAGTA
Statistics
Matches: 111, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 11 0.10
45 100 0.90
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (45 bp):
ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
Found at i:37028389 original size:24 final size:24
Alignment explanation
Indices: 37028344--37028395 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
37028334 TCGTGGGTAA
* *
37028344 GAAGAAGAGGAGCAAGAAAGTGAT
1 GAAGAAGAAGAGCAAGAAAGTGAG
*
37028368 GAAGAAGAAGAG-AATGAGAGTGAG
1 GAAGAAGAAGAGCAA-GAAAGTGAG
37028392 GAAG
1 GAAG
37028396 GGGAGGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.50, C:0.02, G:0.40, T:0.08
Consensus pattern (24 bp):
GAAGAAGAAGAGCAAGAAAGTGAG
Found at i:37034782 original size:33 final size:33
Alignment explanation
Indices: 37034745--37034810 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
37034735 GAATAGATTT
*
37034745 CTCCCCCT-TAATAAAAGTCATTTTCAATTTAAG
1 CTCCCCCTAT-ATAAAAATCATTTTCAATTTAAG
37034778 CTCCCCCTATATAAAAATCATTTTCAATTTAAG
1 CTCCCCCTATATAAAAATCATTTTCAATTTAAG
37034811 GCATAAAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (33 bp):
CTCCCCCTATATAAAAATCATTTTCAATTTAAG
Found at i:37041013 original size:18 final size:18
Alignment explanation
Indices: 37040990--37041027 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37040980 GGGCTCCGCC
37040990 CCGCACCCCTGGTCCATA
1 CCGCACCCCTGGTCCATA
*
37041008 CCGCACCCCTGGTCTATA
1 CCGCACCCCTGGTCCATA
37041026 CC
1 CC
37041028 CCTGTCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.50, G:0.16, T:0.18
Consensus pattern (18 bp):
CCGCACCCCTGGTCCATA
Found at i:37043697 original size:150 final size:150
Alignment explanation
Indices: 37043426--37043727 Score: 586
Period size: 150 Copynumber: 2.0 Consensus size: 150
37043416 CCAAAGGATG
37043426 CTGGAAAAGTATGTAAGCTACAATGATCCATTTATGGATTAAAGCAAGCTTCTCTAAGTTGGAAT
1 CTGGAAAAGTATGTAAGCTACAATGATCCATTTATGGATTAAAGCAAGCTTCTCTAAGTTGGAAT
37043491 CTTCGTTTTAATGATGCAATCAAAGAGTTTGGTTTTATCAAAAATGAAGATGAGCCATGTGTTTA
66 CTTCGTTTTAATGATGCAATCAAAGAGTTTGGTTTTATCAAAAATGAAGATGAGCCATGTGTTTA
37043556 CAAGAAAGTTAGTGGGAGCA
131 CAAGAAAGTTAGTGGGAGCA
*
37043576 CTGGAAAGGTATGTAAGCTACAATGATCCATTTATGGATTAAAGCAAGCTTCTCTAAGTTGGAAT
1 CTGGAAAAGTATGTAAGCTACAATGATCCATTTATGGATTAAAGCAAGCTTCTCTAAGTTGGAAT
*
37043641 CTTCGTTTTAATGATGCAATTAAAGAGTTTGGTTTTATCAAAAATGAAGATGAGCCATGTGTTTA
66 CTTCGTTTTAATGATGCAATCAAAGAGTTTGGTTTTATCAAAAATGAAGATGAGCCATGTGTTTA
37043706 CAAGAAAGTTAGTGGGAGCA
131 CAAGAAAGTTAGTGGGAGCA
37043726 CT
1 CT
37043728 ATTACATTCT
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (150 bp):
CTGGAAAAGTATGTAAGCTACAATGATCCATTTATGGATTAAAGCAAGCTTCTCTAAGTTGGAAT
CTTCGTTTTAATGATGCAATCAAAGAGTTTGGTTTTATCAAAAATGAAGATGAGCCATGTGTTTA
CAAGAAAGTTAGTGGGAGCA
Found at i:37052908 original size:39 final size:41
Alignment explanation
Indices: 37052856--37052940 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 41
37052846 AGTAATTCTG
* * *
37052856 ACTTGTTTGGAAATCATTTTGA--TGTGTTAAAATGATTTTA
1 ACTTGGTTGGAAATCATTATGACTTG-GTTAAAATAATTTTA
37052896 ACTTGGTT-GAAATCATTATGACTTGGTTAAAATAATTTTA
1 ACTTGGTTGGAAATCATTATGACTTGGTTAAAATAATTTTA
*
37052936 TCTTG
1 ACTTG
37052941 ATTTTAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 12 0.31
40 25 0.64
41 2 0.05
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (41 bp):
ACTTGGTTGGAAATCATTATGACTTGGTTAAAATAATTTTA
Found at i:37052940 original size:20 final size:19
Alignment explanation
Indices: 37052881--37052940 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
37052871 ATTTTGATGT
*
37052881 GTTAAAATGATTTTAACTTG
1 GTTAAAATAATTTT-ACTTG
* * *
37052901 GTTGAAATCATTATGACTTG
1 GTTAAAATAATT-TTACTTG
37052921 GTTAAAATAATTTTATCTTG
1 GTTAAAATAATTTTA-CTTG
37052941 ATTTTAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.91
21 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (19 bp):
GTTAAAATAATTTTACTTG
Found at i:37055021 original size:20 final size:20
Alignment explanation
Indices: 37054974--37055026 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
37054964 TTTAAAACCT
* **
37054974 AGTGGTATTGATATTTTTCC
1 AGTGGTATCGATATTTTTAA
37054994 A-TGAGTATCGATATTTTTAA
1 AGTG-GTATCGATATTTTTAA
37055014 AGTGGTATCGATA
1 AGTGGTATCGATA
37055027 CCAAATTACC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (20 bp):
AGTGGTATCGATATTTTTAA
Found at i:37063140 original size:20 final size:19
Alignment explanation
Indices: 37063115--37063198 Score: 69
Period size: 20 Copynumber: 4.3 Consensus size: 19
37063105 GCCTAGAGCA
*
37063115 ATTTTGACTTGTTTGAAATC
1 ATTTTGACTTG-TTAAAATC
* * *
37063135 ATTTTGACATCTTAAAATG
1 ATTTTGACTTGTTAAAATC
* * *
37063154 ATTTTAAATTGGTTGAAATC
1 ATTTTGACTT-GTTAAAATC
*
37063174 ATTTTGCCTTCGTTAAAATC
1 ATTTTGACTT-GTTAAAATC
37063194 ATTTT
1 ATTTT
37063199 ATCTTAATTT
Statistics
Matches: 48, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
19 13 0.27
20 35 0.73
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.48
Consensus pattern (19 bp):
ATTTTGACTTGTTAAAATC
Found at i:37064282 original size:30 final size:31
Alignment explanation
Indices: 37064243--37064302 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
37064233 GGAGTTGGGA
*
37064243 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAC
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAC
* *
37064274 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
37064303 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAC
Found at i:37064532 original size:9 final size:9
Alignment explanation
Indices: 37064514--37064577 Score: 101
Period size: 9 Copynumber: 7.1 Consensus size: 9
37064504 TATAGTTTGA
*
37064514 TATTCAAAT
1 TATTCGAAT
37064523 TATTCGAAT
1 TATTCGAAT
*
37064532 TATTCGAGT
1 TATTCGAAT
37064541 TATTCGAAT
1 TATTCGAAT
37064550 TATTCGAAT
1 TATTCGAAT
*
37064559 TATTCGAGT
1 TATTCGAAT
37064568 TATTCGAAT
1 TATTCGAAT
37064577 T
1 T
37064578 CGAAAACTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37064550 original size:27 final size:27
Alignment explanation
Indices: 37064514--37064577 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
37064504 TATAGTTTGA
*
37064514 TATTCAAATTATTCGAATTATTCGAGT
1 TATTCGAATTATTCGAATTATTCGAGT
37064541 TATTCGAATTATTCGAATTATTCGAGT
1 TATTCGAATTATTCGAATTATTCGAGT
37064568 TATTCGAATT
1 TATTCGAATT
37064578 CGAAAACTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.45
Consensus pattern (27 bp):
TATTCGAATTATTCGAATTATTCGAGT
Found at i:37068161 original size:23 final size:21
Alignment explanation
Indices: 37068111--37068161 Score: 50
Period size: 21 Copynumber: 2.3 Consensus size: 21
37068101 AAGACGACTT
**
37068111 AGAGAAAAGCTTATTGCACAA
1 AGAGAAAAGCTTATACCACAA
37068132 A-ATGAAAAGCTTAATACCATCAA
1 AGA-GAAAAGCTT-ATACCA-CAA
37068155 AGAGAAA
1 AGAGAAA
37068162 TTGACCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.04
21 10 0.42
22 4 0.17
23 8 0.33
24 1 0.04
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.18
Consensus pattern (21 bp):
AGAGAAAAGCTTATACCACAA
Found at i:37071090 original size:17 final size:17
Alignment explanation
Indices: 37071068--37071106 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
37071058 AAATCTATTA
*
37071068 AAAATC-AAGTTAAGCTT
1 AAAATCTAA-TTAAACTT
37071085 AAAATCTAATTAAACTT
1 AAAATCTAATTAAACTT
37071102 AAAAT
1 AAAAT
37071107 TTTGAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAATCTAATTAAACTT
Found at i:37071376 original size:19 final size:18
Alignment explanation
Indices: 37071352--37071387 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37071342 CCTAATTGAA
37071352 TTAAAAATATAAATCTAAT
1 TTAAAAATA-AAATCTAAT
*
37071371 TTAAAATTAAAATCTAA
1 TTAAAAATAAAATCTAA
37071388 CTAGACTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (18 bp):
TTAAAAATAAAATCTAAT
Found at i:37071401 original size:99 final size:99
Alignment explanation
Indices: 37071278--37071498 Score: 291
Period size: 98 Copynumber: 2.2 Consensus size: 99
37071268 GATTTCTAAC
* * *
37071278 TTAAAATCTAACTACACTTAAAAAAATATAAAATCTAATTTAAACCTAGAATTTAAACTTATAAC
1 TTAAAATCTAACTAAACTT-AAAAAATATAAAATCTAATTTAAACCTAAAATTTAAACTTACAAC
*
37071343 CTAATTGAATTAAAAATAT-AAATCTAATTTAAAA
65 CTAATTGAATTAAAAATATAAAATCCAATTTAAAA
* * * * *
37071377 TTAAAATCTAACTAGACTTGAAAAATCTAAAATCTAATTTAATCCTAAAATTTAAACTTACAATC
1 TTAAAATCTAACTAAACTTAAAAAATATAAAATCTAATTTAAACCTAAAATTTAAACTTACAACC
* * * **
37071442 TAATTGGATTTAAAATCTAAAATCCAATTTAACC
66 TAATTGAATTAAAAATATAAAATCCAATTTAAAA
*
37071476 TTAAAATCTAGCTAAACTTAAAA
1 TTAAAATCTAACTAAACTTAAAA
37071499 TCTAATGGCT
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
98 55 0.52
99 50 0.48
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (99 bp):
TTAAAATCTAACTAAACTTAAAAAATATAAAATCTAATTTAAACCTAAAATTTAAACTTACAACC
TAATTGAATTAAAAATATAAAATCCAATTTAAAA
Found at i:37077998 original size:27 final size:27
Alignment explanation
Indices: 37077962--37078038 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
37077952 TGTGAACACC
*
37077962 CCATAAAATGGAAACCTTTGTGGTGAT
1 CCATAAAATGGAAGCCTTTGTGGTGAT
* *
37077989 CTA-AGAAATGGAAGCCTTTTTGGTGAT
1 CCATA-AAATGGAAGCCTTTGTGGTGAT
37078016 CCATAAAATGGAAGCCTTTGTGG
1 CCATAAAATGGAAGCCTTTGTGG
37078039 CCGACTAAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (27 bp):
CCATAAAATGGAAGCCTTTGTGGTGAT
Found at i:37080046 original size:21 final size:21
Alignment explanation
Indices: 37080022--37080088 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
37080012 TGCTTCGGTA
37080022 CCCCTAAATTGTACATAAGTG
1 CCCCTAAATTGTACATAAGTG
* * ** *
37080043 CCCCT-ATTTGTACTTCGGTA
1 CCCCTAAATTGTACATAAGTG
* *
37080063 CCCCTAAATTGCACATACGTG
1 CCCCTAAATTGTACATAAGTG
37080084 CCCCT
1 CCCCT
37080089 GTTTGTACTA
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (21 bp):
CCCCTAAATTGTACATAAGTG
Found at i:37080055 original size:20 final size:20
Alignment explanation
Indices: 37080030--37080096 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
37080020 TACCCCTAAA
37080030 TTGTACATAAGTGCCCCTAT
1 TTGTACATAAGTGCCCCTAT
* ** * *
37080050 TTGTACTTCGGTACCCCTAAA
1 TTGTACATAAGTGCCCCT-AT
* * *
37080071 TTGCACATACGTGCCCCTGT
1 TTGTACATAAGTGCCCCTAT
37080091 TTGTAC
1 TTGTAC
37080097 TATGATACCC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.34
Consensus pattern (20 bp):
TTGTACATAAGTGCCCCTAT
Found at i:37080116 original size:41 final size:41
Alignment explanation
Indices: 37079990--37080097 Score: 171
Period size: 41 Copynumber: 2.6 Consensus size: 41
37079980 TTTCCTGAAG
* *
37079990 TGCACATTCGTGCCCCTGTTTGTGCTTCGGTACCCCTAAAT
1 TGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTAAAT
* * *
37080031 TGTACATAAGTGCCCCTATTTGTACTTCGGTACCCCTAAAT
1 TGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTAAAT
37080072 TGCACATACGTGCCCCTGTTTGTACT
1 TGCACATACGTGCCCCTGTTTGTACT
37080098 ATGATACCCT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.34
Consensus pattern (41 bp):
TGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTAAAT
Found at i:37080127 original size:41 final size:41
Alignment explanation
Indices: 37080000--37080133 Score: 128
Period size: 41 Copynumber: 3.3 Consensus size: 41
37079990 TGCACATTCG
* * * * *
37080000 TGCCCCTGTTTGTGCTTCGGTACCCCTAAATTGTACATA-A
1 TGCCCCTATTTGTACTTCGATACCCCTAAATTGCACACACA
* * *
37080040 GTGCCCCTATTTGTACTTCGGTACCCCTAAATTGCACATACG
1 -TGCCCCTATTTGTACTTCGATACCCCTAAATTGCACACACA
* * * *
37080082 TGCCCCTGTTTGTACTAT-GATACCCTTGAATTGCATACACA
1 TGCCCCTATTTGTACT-TCGATACCCCTAAATTGCACACACA
37080123 TGCCCCTATTT
1 TGCCCCTATTT
37080134 ACACTCTAGT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 78 0.99
42 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (41 bp):
TGCCCCTATTTGTACTTCGATACCCCTAAATTGCACACACA
Found at i:37084018 original size:27 final size:26
Alignment explanation
Indices: 37083962--37084112 Score: 115
Period size: 27 Copynumber: 5.6 Consensus size: 26
37083952 AAATTGTACA
* * *
37083962 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAAAT-GACTATG-T
*
37083989 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATGACTATG-T
* * *
37084016 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAAATGACTATG-T
*
37084043 GCACTAAGTGTGCGAGATGGACTATGT
1 GCACTAAGTGTGCGAAAT-GACTATGT
** * *
37084070 GGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGAAATGACTATGT
*
37084097 GGCACTAAATGTGCGA
1 -GCACTAAGTGTGCGA
37084113 GTTGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 78 0.76
28 24 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGACTATGT
Found at i:37084022 original size:54 final size:54
Alignment explanation
Indices: 37083962--37084087 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
37083952 AAATTGTACA
* ** **
37083962 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCGAAATGGAATATG-TG
* *
37084016 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
37084071 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
37084088 TGATTACGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 39 0.63
55 23 0.37
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:37084085 original size:55 final size:54
Alignment explanation
Indices: 37083989--37084138 Score: 160
Period size: 55 Copynumber: 2.8 Consensus size: 54
37083979 CTACTTTGTT
* *
37083989 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
37084043 GCACTAAGTGTGCGAGATGGACTATG-TGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGAT-GAATATGAT-GCACTAAGTGTGCGAATTGACCACGCG
* * * *
37084098 GCACTAAATGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGATGAATATGAT-GCACTAAGTGTGCG
37084139 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 37 0.46
55 44 0.54
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
Found at i:37084102 original size:82 final size:81
Alignment explanation
Indices: 37083962--37084117 Score: 188
Period size: 82 Copynumber: 1.9 Consensus size: 81
37083952 AAATTGTACA
* * * * * *
37083962 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
37084027 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
37084043 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAAT
*
37084107 GTGCGAGTTGA
64 GTGCGAATTGA
37084118 TTATATAGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:37084117 original size:27 final size:27
Alignment explanation
Indices: 37083989--37084138 Score: 113
Period size: 27 Copynumber: 5.5 Consensus size: 27
37083979 CTACTTTGTT
** * *
37083989 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTACG-TG
* ** * *
37084016 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* * *
37084043 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTACGTG
*
37084071 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* ** *
37084098 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTACGTG
*
37084125 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
37084139 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 79 0.77
28 23 0.23
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACGTG
Found at i:37097287 original size:25 final size:25
Alignment explanation
Indices: 37097259--37097318 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
37097249 CTTCGAGGTA
* *
37097259 AATAATGGTAAGCTCATATGAGCTG
1 AATAATGGTAAGCTCAGAAGAGCTG
* *
37097284 AATAACGATAAGCTCAGAAGAGCTG
1 AATAATGGTAAGCTCAGAAGAGCTG
*
37097309 AA-ATTGGTAA
1 AATAATGGTAA
37097319 CCCTAATGAC
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (25 bp):
AATAATGGTAAGCTCAGAAGAGCTG
Found at i:37102070 original size:28 final size:28
Alignment explanation
Indices: 37102030--37102084 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
37102020 CTCGTGGTTT
37102030 GAGCTTTCTCTTTCTCAAATTTCTCTAA
1 GAGCTTTCTCTTTCTCAAATTTCTCTAA
*
37102058 GAGCTTTCTCTTTCTCAGATTTCTCTA
1 GAGCTTTCTCTTTCTCAAATTTCTCTA
37102085 GGCGATCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.18, C:0.25, G:0.09, T:0.47
Consensus pattern (28 bp):
GAGCTTTCTCTTTCTCAAATTTCTCTAA
Found at i:37113408 original size:13 final size:12
Alignment explanation
Indices: 37113386--37113415 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
37113376 ATTTATTCTC
37113386 CTTTTTTCTTTT
1 CTTTTTTCTTTT
37113398 CTTTCTTTCTTTT
1 CTTT-TTTCTTTT
37113411 CTTTT
1 CTTTT
37113416 ACTATTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
CTTTTTTCTTTT
Found at i:37121801 original size:21 final size:20
Alignment explanation
Indices: 37121776--37121823 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
37121766 ATAGGAATAT
* *
37121776 ATCAACTCAAGGTAATTATA
1 ATCAACACAAGGGAATTATA
*
37121796 ATTCAAGACAAGGGAATTATA
1 A-TCAACACAAGGGAATTATA
37121817 ATCAACA
1 ATCAACA
37121824 ATAGCAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (20 bp):
ATCAACACAAGGGAATTATA
Found at i:37132271 original size:27 final size:27
Alignment explanation
Indices: 37132241--37132446 Score: 184
Period size: 27 Copynumber: 7.3 Consensus size: 27
37132231 GATTCATGGG
37132241 AAAATGACCAAAATACCCTTGAAGGGT
1 AAAATGACCAAAATACCCTTGAAGGGT
*
37132268 AAAATGACCAAAATACCTTTGAAGGGT
1 AAAATGACCAAAATACCCTTGAAGGGT
* *
37132295 AAAATGAGGTAAAATGATCGAAATACCCTTGAAGGGT
1 -AAA--A--T-----GACCAAAATACCCTTGAAGGGT
*** *
37132332 AAAATGATTGAAATACCCTCGAAGGGT
1 AAAATGACCAAAATACCCTTGAAGGGT
37132359 AAAATGACCAAAATACCCTTGATA-GGT
1 AAAATGACCAAAATACCCTTGA-AGGGT
* *
37132386 AAAATGACCGAAATACCCCT-AAGGGT
1 AAAATGACCAAAATACCCTTGAAGGGT
* *
37132412 AAAATGACTAAAATACCCCT-ATAGGGT
1 AAAATGACCAAAATACCCTTGA-AGGGT
37132439 AAAATGAC
1 AAAATGAC
37132447 TGTTATACCC
Statistics
Matches: 152, Mismatches: 14, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.01
26 23 0.15
27 98 0.64
28 4 0.03
30 1 0.01
32 2 0.01
34 1 0.01
36 3 0.02
37 19 0.12
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (27 bp):
AAAATGACCAAAATACCCTTGAAGGGT
Found at i:37132306 original size:37 final size:37
Alignment explanation
Indices: 37132265--37132338 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
37132255 ACCCTTGAAG
*
37132265 GGTAAAATGACCAAAATACCTTTGAAGGGTAAAATGA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGA
* *
37132302 GGTAAAATGATCGAAATACCCTTGAAGGGTAAAATGA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGA
37132339 TTGAAATACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.22
Consensus pattern (37 bp):
GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGA
Found at i:37132346 original size:64 final size:64
Alignment explanation
Indices: 37132241--37132365 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
37132231 GATTCATGGG
* *
37132241 AAAATGACCAAAATACCCTTGAAGGGTAAAATGACCAAAATACCTTTGAAGGGTAAAATGAGGT
1 AAAATGACCAAAATACCCTTGAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGAGGT
* * ***
37132305 AAAATGATCGAAATACCCTTGAAGGGTAAAATGATTGAAATACCCTCGAAGGGTAAAATGA
1 AAAATGACCAAAATACCCTTGAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGA
37132366 CCAAAATACC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (64 bp):
AAAATGACCAAAATACCCTTGAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGAGGT
Found at i:37132455 original size:53 final size:54
Alignment explanation
Indices: 37132302--37132459 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 54
37132292 GGTAAAATGA
* * *
37132302 GGTAAAATGA-TCGAAATACCCTTGA-AGGGTAAAATGATTGAAATACCCTCGAAG
1 GGTAAAATGACT-AAAATACCCTTGATAGGGTAAAATGACTGAAATACCC-CTAAG
* *
37132356 GGTAAAATGACCAAAATACCCTTGATA-GGTAAAATGACCGAAATACCCCTAAG
1 GGTAAAATGACTAAAATACCCTTGATAGGGTAAAATGACTGAAATACCCCTAAG
* **
37132409 GGTAAAATGACTAAAATACCCCT-ATAGGGTAAAATGACTGTTATACCCCTA
1 GGTAAAATGACTAAAATACCCTTGATAGGGTAAAATGACTGAAATACCCCTA
37132460 GGAGTTGAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
52 3 0.03
53 46 0.51
54 41 0.45
55 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.22
Consensus pattern (54 bp):
GGTAAAATGACTAAAATACCCTTGATAGGGTAAAATGACTGAAATACCCCTAAG
Found at i:37132840 original size:30 final size:30
Alignment explanation
Indices: 37132775--37132864 Score: 139
Period size: 30 Copynumber: 3.0 Consensus size: 30
37132765 TTCTACATTG
*
37132775 CACTGATTATTGTATTGGGCTAAGGCCC-C-
1 CACTG-TTACTGTATTGGGCTAAGGCCCACA
37132804 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
*
37132834 CACTGTTACTGTAATGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
37132864 C
1 C
37132865 TATACTAATA
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
28 21 0.37
29 6 0.11
30 30 0.53
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (30 bp):
CACTGTTACTGTATTGGGCTAAGGCCCACA
Found at i:37149038 original size:21 final size:21
Alignment explanation
Indices: 37148995--37149039 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37148985 TGCAGAAGAG
** *
37148995 GAAGTTGTTGCTGAAGAATAA
1 GAAGTTGTTGAAGAAGAAAAA
*
37149016 GAAGTTGTTGAAGATGAAAAA
1 GAAGTTGTTGAAGAAGAAAAA
37149037 GAA
1 GAA
37149040 AAAGAAGAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.29, T:0.24
Consensus pattern (21 bp):
GAAGTTGTTGAAGAAGAAAAA
Found at i:37153168 original size:25 final size:25
Alignment explanation
Indices: 37153140--37153258 Score: 100
Period size: 25 Copynumber: 4.8 Consensus size: 25
37153130 ATTCTGACCC
*
37153140 ACAGCTTGTGAGAGCATACCGATCT
1 ACAGCTCGTGAGAGCATACCGATCT
* ** *
37153165 ACAGCTCGTGAGAGTATATTGATTT
1 ACAGCTCGTGAGAGCATACCGATCT
*
37153190 ATC-GCTTGTGAGAGCATACCGATCT
1 A-CAGCTCGTGAGAGCATACCGATCT
* * *
37153215 ATAGCTCGAGTGAGCATACCGAT-T
1 ACAGCTCGTGAGAGCATACCGATCT
*
37153239 CACAGTTCGT-ATGAGCATAC
1 -ACAGCTCGTGA-GAGCATAC
37153259 ACGTACAGGA
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
24 1 0.01
25 70 0.97
26 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
ACAGCTCGTGAGAGCATACCGATCT
Found at i:37163859 original size:53 final size:53
Alignment explanation
Indices: 37163786--37163887 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
37163776 CCTTTTTCAG
* * * *
37163786 CCTCTACTACCGACCTTTGCCATCATTCATCA-CTGTTAGACCACCATCATCAA
1 CCTCCACTACCAACCCTTGCCATCATTCATCATC-GTCAGACCACCATCATCAA
*
37163839 CCTCCACTACCAACCCTTGCCATCGTTCATCATCGTCAGACCACCATCA
1 CCTCCACTACCAACCCTTGCCATCATTCATCATCGTCAGACCACCATCA
37163888 GTCTACTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 42 0.98
54 1 0.02
ACGTcount: A:0.25, C:0.41, G:0.08, T:0.25
Consensus pattern (53 bp):
CCTCCACTACCAACCCTTGCCATCATTCATCATCGTCAGACCACCATCATCAA
Found at i:37165874 original size:18 final size:19
Alignment explanation
Indices: 37165851--37165887 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
37165841 AAATTAAAAT
37165851 ATTAATTAAACT-AATTAA
1 ATTAATTAAACTAAATTAA
*
37165869 ATTAATTAACCTAAATTAA
1 ATTAATTAAACTAAATTAA
37165888 TCTAATGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAATTAAACTAAATTAA
Found at i:37165883 original size:14 final size:14
Alignment explanation
Indices: 37165866--37165912 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
37165856 TTAAACTAAT
37165866 TAAATTAATTAACC
1 TAAATTAATTAACC
**
37165880 TAAATTAATCTAATG
1 TAAATTAAT-TAACC
*
37165895 GAAATTAATTAACC
1 TAAATTAATTAACC
37165909 TAAA
1 TAAA
37165913 GTAACCTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (14 bp):
TAAATTAATTAACC
Found at i:37165906 original size:29 final size:28
Alignment explanation
Indices: 37165854--37165928 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 28
37165844 TTAAAATATT
*
37165854 AATTAAACTAATTAAATTAATTAACCTA
1 AATTAAACTAATGAAATTAATTAACCTA
*
37165882 AATTAATCTAATGGAAATTAATTAACCTA
1 AATTAAACTAAT-GAAATTAATTAACCTA
* *
37165911 AAGTAACCTAATGAAATT
1 AATTAAACTAATGAAATT
37165929 TCTTATTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 17 0.40
29 25 0.60
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.33
Consensus pattern (28 bp):
AATTAAACTAATGAAATTAATTAACCTA
Found at i:37171819 original size:43 final size:43
Alignment explanation
Indices: 37171690--37171836 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
37171680 CAAAGCCATA
* * *
37171690 TCCTAGATATGGTCTTACATGTT-ATCACATATCGATGCCACTG
1 TCCTAGACATGGTCTTACAT-TTAATCTCATATCGATGCCAATG
* * * *
37171733 TCCCAGACA-GTGTCTTATA-TGAA-ATCATATACGATGCCAATG
1 TCCTAGACATG-GTCTTACATTTAATCTCATAT-CGATGCCAATG
*
37171775 TCCTAGACACGGTCTTACATTTAATCTCATATCGATGCCAATG
1 TCCTAGACATGGTCTTACATTTAATCTCATATCGATGCCAATG
37171818 TCCTAGACATGGTCTTACA
1 TCCTAGACATGGTCTTACA
37171837 CGAAATCACA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
41 6 0.07
42 27 0.31
43 47 0.55
44 6 0.07
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATTTAATCTCATATCGATGCCAATG
Found at i:37179369 original size:573 final size:573
Alignment explanation
Indices: 37178281--37179426 Score: 2292
Period size: 573 Copynumber: 2.0 Consensus size: 573
37178271 AATTAGCAAC
37178281 AACCTATACTAAACACAAATGCCAAATCAAATCATACCAAAACCTCAACTATATCTTATACTAAT
1 AACCTATACTAAACACAAATGCCAAATCAAATCATACCAAAACCTCAACTATATCTTATACTAAT
37178346 TATACCAATTTCATTTTTCACAATATCAATCATATAAACAACAAGACATCTCTAATAATTTGGCC
66 TATACCAATTTCATTTTTCACAATATCAATCATATAAACAACAAGACATCTCTAATAATTTGGCC
37178411 AAATGCATACAGCATCACAAAACATATATATATTCATACCATATACCAAAATCTCATACTTATCA
131 AAATGCATACAGCATCACAAAACATATATATATTCATACCATATACCAAAATCTCATACTTATCA
37178476 AAATGAGCCAAAGAAATTTTCATCATTCACAAACCAATTCACAAGGCAATTTATACTTCAAAACA
196 AAATGAGCCAAAGAAATTTTCATCATTCACAAACCAATTCACAAGGCAATTTATACTTCAAAACA
37178541 TAGGTTAATAATAATTCACACCAAATAGTCAAATTCACATGGCATAGCATAGTCATCACATAGAA
261 TAGGTTAATAATAATTCACACCAAATAGTCAAATTCACATGGCATAGCATAGTCATCACATAGAA
37178606 AATATGAACACATACTAACATTAACATCTAACCAAATAATTAACCATATGACAATACCAAATTTG
326 AATATGAACACATACTAACATTAACATCTAACCAAATAATTAACCATATGACAATACCAAATTTG
37178671 TCGAATCTCAAGATAGATTATAAACATCACCTACCATTTGTCAATTCACAAAATAAGCTCATTTA
391 TCGAATCTCAAGATAGATTATAAACATCACCTACCATTTGTCAATTCACAAAATAAGCTCATTTA
37178736 CATAGCCAAAGTAACTTCCAACAACTACACCATTTACAAACCAACTTACATGGCTAAAACCACAA
456 CATAGCCAAAGTAACTTCCAACAACTACACCATTTACAAACCAACTTACATGGCTAAAACCACAA
37178801 CCCAAAAACATACCACATGATCACTAGCCTATACATGCCATATACTATAATTA
521 CCCAAAAACATACCACATGATCACTAGCCTATACATGCCATATACTATAATTA
37178854 AACCTATACTAAACACAAATGCCAAATCAAATCATACCAAAACCTCAACTATATCTTATACTAAT
1 AACCTATACTAAACACAAATGCCAAATCAAATCATACCAAAACCTCAACTATATCTTATACTAAT
37178919 TATACCAATTTCATTTTTCACAATATCAATCATATAAACAACAAGACATCTCTAATAATTTGGCC
66 TATACCAATTTCATTTTTCACAATATCAATCATATAAACAACAAGACATCTCTAATAATTTGGCC
37178984 AAATGCATACAGCATCACAAAACATATATATATTCATACCATATACCAAAATCTCATACTTATCA
131 AAATGCATACAGCATCACAAAACATATATATATTCATACCATATACCAAAATCTCATACTTATCA
37179049 AAATGAGCCAAAGAAATTTTCATCATTCACAAACCAATTCACAAGGCAATTTATACTTCAAAACA
196 AAATGAGCCAAAGAAATTTTCATCATTCACAAACCAATTCACAAGGCAATTTATACTTCAAAACA
37179114 TAGGTTAATAATAATTCACACCAAATAGTCAAATTCACATGGCATAGCATAGTCATCACATAGAA
261 TAGGTTAATAATAATTCACACCAAATAGTCAAATTCACATGGCATAGCATAGTCATCACATAGAA
37179179 AATATGAACACATACTAACATTAACATCTAACCAAATAATTAACCATATGACAATACCAAATTTG
326 AATATGAACACATACTAACATTAACATCTAACCAAATAATTAACCATATGACAATACCAAATTTG
37179244 TCGAATCTCAAGATAGATTATAAACATCACCTACCATTTGTCAATTCACAAAATAAGCTCATTTA
391 TCGAATCTCAAGATAGATTATAAACATCACCTACCATTTGTCAATTCACAAAATAAGCTCATTTA
37179309 CATAGCCAAAGTAACTTCCAACAACTACACCATTTACAAACCAACTTACATGGCTAAAACCACAA
456 CATAGCCAAAGTAACTTCCAACAACTACACCATTTACAAACCAACTTACATGGCTAAAACCACAA
37179374 CCCAAAAACATACCACATGATCACTAGCCTATACATGCCATATACTATAATTA
521 CCCAAAAACATACCACATGATCACTAGCCTATACATGCCATATACTATAATTA
37179427 CAAGCTTCAA
Statistics
Matches: 573, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
573 573 1.00
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.26
Consensus pattern (573 bp):
AACCTATACTAAACACAAATGCCAAATCAAATCATACCAAAACCTCAACTATATCTTATACTAAT
TATACCAATTTCATTTTTCACAATATCAATCATATAAACAACAAGACATCTCTAATAATTTGGCC
AAATGCATACAGCATCACAAAACATATATATATTCATACCATATACCAAAATCTCATACTTATCA
AAATGAGCCAAAGAAATTTTCATCATTCACAAACCAATTCACAAGGCAATTTATACTTCAAAACA
TAGGTTAATAATAATTCACACCAAATAGTCAAATTCACATGGCATAGCATAGTCATCACATAGAA
AATATGAACACATACTAACATTAACATCTAACCAAATAATTAACCATATGACAATACCAAATTTG
TCGAATCTCAAGATAGATTATAAACATCACCTACCATTTGTCAATTCACAAAATAAGCTCATTTA
CATAGCCAAAGTAACTTCCAACAACTACACCATTTACAAACCAACTTACATGGCTAAAACCACAA
CCCAAAAACATACCACATGATCACTAGCCTATACATGCCATATACTATAATTA
Found at i:37179968 original size:43 final size:43
Alignment explanation
Indices: 37179843--37179981 Score: 185
Period size: 43 Copynumber: 3.3 Consensus size: 43
37179833 TATCCAAGAT
* * * *
37179843 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCTCATATTGATGCCAATGTCCTAGAC
* *
37179886 A-GTGTCTTATATG-AA-ATCATATATGATGCCAATGTCCTAGAC
1 ATG-GTCTTACATGTAATCTCATAT-TGATGCCAATGTCCTAGAC
37179928 ATGGTCTTACATGTAATCTCATATTGATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCTCATATTGATGCCAATGTCCTAGAC
37179971 ATGGTCTTACA
1 ATGGTCTTACA
37179982 CGAAATCACA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
41 5 0.06
42 29 0.35
43 43 0.52
44 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTCATATTGATGCCAATGTCCTAGAC
Found at i:37182356 original size:25 final size:25
Alignment explanation
Indices: 37182286--37182345 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
37182276 AAGCTGTAAA
*
37182286 CAGTAAGCTCATACGAGTTGAATAT
1 CAGTAAGCTCATACGAGCTGAATAT
* *
37182311 C-GATAAGCTCATGCGAACTGAATAT
1 CAG-TAAGCTCATACGAGCTGAATAT
37182336 CAGTAAGCTC
1 CAGTAAGCTC
37182346 TCTCGAGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (25 bp):
CAGTAAGCTCATACGAGCTGAATAT
Found at i:37187011 original size:13 final size:13
Alignment explanation
Indices: 37186993--37187020 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37186983 AGATCAAGTC
37186993 AAATTTTACATTA
1 AAATTTTACATTA
37187006 AAATTTTACATTA
1 AAATTTTACATTA
37187019 AA
1 AA
37187021 CTAACACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
AAATTTTACATTA
Found at i:37190234 original size:24 final size:24
Alignment explanation
Indices: 37190207--37190258 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37190197 TTAGTAAGTC
*
37190207 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37190231 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37190255 AAAT
1 AAAT
37190259 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37192204 original size:24 final size:24
Alignment explanation
Indices: 37192177--37192228 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37192167 TTAGTAAGTC
*
37192177 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37192201 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37192225 AAAT
1 AAAT
37192229 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37194749 original size:29 final size:30
Alignment explanation
Indices: 37194715--37194773 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
37194705 TTTAGTCTAA
*
37194715 TGTGCAATAT-TATATA-TAAATTTTGATTT
1 TGTGCAAT-TGTATACATTAAATTTTGATTT
37194744 TGTGCAATTGTATACATTAAATTTTGATTT
1 TGTGCAATTGTATACATTAAATTTTGATTT
37194774 GATTCAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 13 0.48
30 13 0.48
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (30 bp):
TGTGCAATTGTATACATTAAATTTTGATTT
Found at i:37199826 original size:103 final size:103
Alignment explanation
Indices: 37199647--37199851 Score: 383
Period size: 103 Copynumber: 2.0 Consensus size: 103
37199637 AAAGAAACAA
37199647 ACAATCAGTATTCACAATGCATAGTTGAACAGTCTTGGACCTAAGCCCTTTTCAGTATCAGTGAC
1 ACAATCAGTATTCACAATGCATAGTTGAACAGTCTTGGACCTAAGCCCTTTTCAGTATCAGTGAC
*
37199712 AGTTTGGGCCTTAGCCCATCTCAATACAGTGTCAAAAT
66 AGTTTGGGCCTTAGCCCATCTCAACACAGTGTCAAAAT
37199750 ACAATCAGTATTCACAATGCATAGTTGAACAGTCTTGGACCTAAGCCCTTTTCAGTATCAGTGAC
1 ACAATCAGTATTCACAATGCATAGTTGAACAGTCTTGGACCTAAGCCCTTTTCAGTATCAGTGAC
* *
37199815 AGTTTGGGCCTTAGCCCATCTCAGCATAGTGTCAAAA
66 AGTTTGGGCCTTAGCCCATCTCAACACAGTGTCAAAA
37199852 ATGCAGTAGG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 99 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (103 bp):
ACAATCAGTATTCACAATGCATAGTTGAACAGTCTTGGACCTAAGCCCTTTTCAGTATCAGTGAC
AGTTTGGGCCTTAGCCCATCTCAACACAGTGTCAAAAT
Found at i:37201290 original size:189 final size:187
Alignment explanation
Indices: 37200940--37201313 Score: 640
Period size: 189 Copynumber: 2.0 Consensus size: 187
37200930 CTCAATTTCT
* * *
37200940 ACTATTTTAGATGATTTTTAAATTTAGACTACTGCTGCTGTCTAAAACTATTTTAGTGTAGATTG
1 ACTAATTTAGATGATTTTTAAAGTTAGACTACTGCTGCTGTCTAAAACTATTTTAGTGCAGATTG
37201005 TTGATTTCCAAGATTATAACACCCTTATTTCCTTTCTCTACAATTTTTTGCATCATTTTCTCTTA
66 TTGATTTCCAAGATTATAACACCCTTATTTCCTTTCTCTACAATTTTTTGCATCATTTTCTCTTA
*
37201070 TTTCTCTTATTTTTCGACGGCAAGAAATTTTGGCTTTTCGCCGAATCCCATTTTTTGC
131 TTTCTCTTATTTTTCGACAGCAAGAAATTTTGGCTTTTCGCCG-ATCCCATTTTTTGC
*
37201128 ACTAATTTAGATGATTTTTCAAAGTTAGGCTACTGCTGCTGTCTAAAACTATTTTAGTGCAGATT
1 ACTAATTTAGATGATTTTT-AAAGTTAGACTACTGCTGCTGTCTAAAACTATTTTAGTGCAGATT
* *
37201193 GTTGATTTCCAAGATTATAACACCCTTATTTCTTTTCTCTATAATTTTTTGCATCATTTTCTCTT
65 GTTGATTTCCAAGATTATAACACCCTTATTTCCTTTCTCTACAATTTTTTGCATCATTTTCTCTT
* * *
37201258 ATTTCTCTTATTTTTCGACAGCAAGCAATTTTGGTTTTTCGTCGATCCCATTTTTT
130 ATTTCTCTTATTTTTCGACAGCAAGAAATTTTGGCTTTTCGCCGATCCCATTTTTT
37201314 TCCATTTCGG
Statistics
Matches: 175, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
188 30 0.17
189 145 0.83
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (187 bp):
ACTAATTTAGATGATTTTTAAAGTTAGACTACTGCTGCTGTCTAAAACTATTTTAGTGCAGATTG
TTGATTTCCAAGATTATAACACCCTTATTTCCTTTCTCTACAATTTTTTGCATCATTTTCTCTTA
TTTCTCTTATTTTTCGACAGCAAGAAATTTTGGCTTTTCGCCGATCCCATTTTTTGC
Found at i:37209690 original size:26 final size:26
Alignment explanation
Indices: 37209661--37209722 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
37209651 TACCTACAGT
*
37209661 AGTTTCAGAATCTCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
37209687 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
*
37209713 AGTTTTAGAA
1 AGTTTCAGAA
37209723 CACTTACAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:37211652 original size:106 final size:106
Alignment explanation
Indices: 37211519--37211761 Score: 477
Period size: 106 Copynumber: 2.3 Consensus size: 106
37211509 GAGATCCCAT
37211519 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
37211584 TGTCTAGGACGAGGCGTTAGCACCGAGATGAGAGGTCCCCC
66 TGTCTAGGACGAGGCGTTAGCACCGAGATGAGAGGTCCCCC
37211625 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
37211690 TGTCTAGGACGAGGCGTTAGCACCGAGATGAGAGGTCCCCC
66 TGTCTAGGACGAGGCGTTAGCACCGAGATGAGAGGTCCCCC
*
37211731 GTAAGACCATGTCTGGGACATGGCATGGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
37211762 CCGATATGAG
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 136 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (106 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
TGTCTAGGACGAGGCGTTAGCACCGAGATGAGAGGTCCCCC
Found at i:37211785 original size:50 final size:50
Alignment explanation
Indices: 37211508--37211786 Score: 247
Period size: 50 Copynumber: 5.3 Consensus size: 50
37211498 ATTTGGGTAA
* *
37211508 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA---TATG
* * * *
37211564 AGAGGTCCCATGTAAGACCATGTCTAGGACGA-GGCGTTAGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGAC-ATGGCATTGGCACCGATATG
** *
37211614 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA---TATG
* * * *
37211670 AGAGGTCCCATGTAAGACCATGTCTAGGACGA-GGCGTTAGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGAC-ATGGCATTGGCACCGATATG
** *
37211720 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
** *
37211770 AGAACTGCCATGTAAGA
1 AGAGGTCCCATGTAAGA
37211787 TAATATATGA
Statistics
Matches: 181, Mismatches: 32, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
49 2 0.01
50 94 0.52
51 1 0.01
53 6 0.03
55 2 0.01
56 74 0.41
57 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
Found at i:37215944 original size:28 final size:28
Alignment explanation
Indices: 37215889--37215951 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
37215879 TATTTAGTAT
* **
37215889 CAGT-ACAGTGTGGGCCTTAGCCTGATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
37215916 CAGTAACAATGTGGTCCTTAGCCCAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
37215944 CAATAACA
1 CAGTAACA
37215952 GTGTAATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (28 bp):
CAGTAACAATGTGGGCCTTAGCCCAATA
Found at i:37216081 original size:26 final size:26
Alignment explanation
Indices: 37216052--37216106 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
37216042 AACACACCAA
*
37216052 TATCGCACCAAAGCTGCCAGTAAAAG
1 TATCGCAACAAAGCTGCCAGTAAAAG
*
37216078 TATCGCAACGAAGCTGCCAGTAAAAG
1 TATCGCAACAAAGCTGCCAGTAAAAG
37216104 TAT
1 TAT
37216107 ATGTGGCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (26 bp):
TATCGCAACAAAGCTGCCAGTAAAAG
Found at i:37216304 original size:27 final size:27
Alignment explanation
Indices: 37216274--37216724 Score: 368
Period size: 27 Copynumber: 16.7 Consensus size: 27
37216264 GGGTATAACA
* * *
37216274 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTTTGGGGGTATTTCG
*
37216301 GTCATTTTACCCTTTAGGGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * * *
37216328 ATTATTTTACCCTTTAGGGTTATTTCA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * *
37216355 ATCGTTTTAACCTTTGGGGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* *
37216382 ATCATTTTACCCTTTCGGGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * **
37216409 ATCATTTTA-TCTTTCGAGGGTATTTTA
1 GTCATTTTACCCTTT-GGGGGTATTTCG
* *
37216436 GTTATTTTA-CCTTTCGGGGGTATTTCA
1 GTCATTTTACCCTTT-GGGGGTATTTCG
* * *
37216463 ATCATTTTACCCTTCGGGGGTATTTTG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * ** *
37216490 GTTATTTTACCCTTCGAAGGTATTTCA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* **
37216517 GTCATTTTACCCTTAGAAGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* *
37216544 ATCATTTTA-CCTTTCGGGGGTATTTCA
1 GTCATTTTACCCTTT-GGGGGTATTTCG
* * *
37216571 GTCATTTTACCATTCGGGGGTATTTTG
1 GTCATTTTACCCTTTGGGGGTATTTCG
** **
37216598 GTCATTTTACCCTTTAAGGGTATTTTA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * *
37216625 GTTATTTTACCTTTTGGGGGTATTTCA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * *
37216652 ATCATTTTAACCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * **
37216679 GTTATTTTACCCTTCGGGGTTATTTTA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* *
37216706 GTCATGTTACCCTTCGGGG
1 GTCATTTTACCCTTTGGGG
37216725 TATGTTGGGC
Statistics
Matches: 347, Mismatches: 73, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
26 8 0.02
27 332 0.96
28 7 0.02
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTTTGGGGGTATTTCG
Found at i:37216703 original size:54 final size:54
Alignment explanation
Indices: 37216275--37216724 Score: 406
Period size: 54 Copynumber: 8.3 Consensus size: 54
37216265 GGTATAACAG
* ** **
37216275 TCATTTTACCCTAT-AGGGGTATTTTGGTCATTTTACCCTTTAGGGGTATTTCGA
1 TCATTTTACCCT-TCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
* ** * * * * *
37216329 TTATTTTACCCTTTAGGGTTATTTCAATCGTTTTAACCTTTGGGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
* * * *
37216383 TCATTTTACCCTTTC-GGGGTATTTC-GATCATTTTATCTTTCGAGGGTATTT-TA
1 TCATTTTACCC-TTCGGGGGTATTTCAG-TCATTTTACCCTTCGGGGGTATTTCGA
* * * * *
37216436 GTTATTTTACCTTTCGGGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTTGG
1 -TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
* ** * **
37216491 TTATTTTACCCTTCGAAGGTATTTCAGTCATTTTACCCTTAGAAGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
* * * *
37216545 TCATTTTACCTTTCGGGGGTATTTCAGTCATTTTACCATTCGGGGGTATTTTGG
1 TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
*** * * * * *
37216599 TCATTTTACCCTTTAAGGGTATTTTAGTTATTTTACCTTTTGGGGGTATTTCAA
1 TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
* * * * *
37216653 TCATTTTAACCTTCGGGGGTATTTCGGTTATTTTACCCTTCGGGGTTATTT-TA
1 TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
*
37216706 GTCATGTTACCCTTCGGGG
1 -TCATTTTACCCTTCGGGG
37216725 TATGTTGGGC
Statistics
Matches: 320, Mismatches: 68, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
53 6 0.02
54 312 0.98
55 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.46
Consensus pattern (54 bp):
TCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGA
Found at i:37223024 original size:12 final size:13
Alignment explanation
Indices: 37223007--37223039 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
37222997 GTACTCATTG
37223007 AAATAAATAAT-T
1 AAATAAATAATAT
37223019 AAATAAAT-ATAT
1 AAATAAATAATAT
37223031 AAATAAATA
1 AAATAAATA
37223040 GCTTGGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 17 0.89
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAAATAATAT
Found at i:37223980 original size:13 final size:13
Alignment explanation
Indices: 37223964--37224019 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
37223954 ATTTTTAAAT
37223964 TATTTAGTGATAA
1 TATTTAGTGATAA
*
37223977 TATTTAATGATAA
1 TATTTAGTGATAA
37223990 TATTTAG-GAT--
1 TATTTAGTGATAA
*
37224000 TATTTTGTGATAA
1 TATTTAGTGATAA
37224013 TATTTAG
1 TATTTAG
37224020 GAAGAATCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 6 0.17
11 3 0.08
12 3 0.08
13 24 0.67
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:37224878 original size:17 final size:19
Alignment explanation
Indices: 37224856--37224897 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
37224846 AGCTTAAAAA
37224856 TATTTTATTTAC-T-AATT
1 TATTTTATTTACTTAAATT
*
37224873 TATTTTATTTTCTTAAATT
1 TATTTTATTTACTTAAATT
37224892 TATTTT
1 TATTTT
37224898 TACATTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
18 1 0.05
19 10 0.45
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (19 bp):
TATTTTATTTACTTAAATT
Found at i:37225650 original size:17 final size:18
Alignment explanation
Indices: 37225628--37225661 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37225618 AATGAACTAA
37225628 GTTAAAAT-AATAAAAAG
1 GTTAAAATAAATAAAAAG
37225645 GTTAAAATAAATAAAAA
1 GTTAAAATAAATAAAAA
37225662 TAAAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (18 bp):
GTTAAAATAAATAAAAAG
Found at i:37226600 original size:45 final size:46
Alignment explanation
Indices: 37226526--37226621 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 46
37226516 CCAGGTTTTA
* * * *
37226526 AGCTCCTACATATGTTGTGGACTCGAGAATACATGAATAAGTTCCG
1 AGCTCCTACATATGTTATGAACTCAAGAATACAAGAATAAGTTCCG
* *
37226572 AGCTCCTAC-TATGTTATGAACTTAAGAATACAAGAATAGGTTCCG
1 AGCTCCTACATATGTTATGAACTCAAGAATACAAGAATAAGTTCCG
37226617 AGCTC
1 AGCTC
37226622 TTGTATATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 35 0.80
46 9 0.20
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (46 bp):
AGCTCCTACATATGTTATGAACTCAAGAATACAAGAATAAGTTCCG
Found at i:37228998 original size:16 final size:16
Alignment explanation
Indices: 37228977--37229046 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
37228967 TTTGGTTCGC
* * *
37228977 TGTATTGGATTAGAAG
1 TGTAATGGAATAGAGG
* *
37228993 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
37229009 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
37229025 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
37229041 TGTAAT
1 TGTAAT
37229047 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:37229028 original size:32 final size:32
Alignment explanation
Indices: 37228977--37229046 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
37228967 TTTGGTTCGC
* * * *
37228977 TGTATTGGATTAGAAGTGTATTGGATTAGAGG
1 TGTAATGGAATAGAAGTGTAATGGAATAGAGG
*
37229009 TGTAATGGAATAGATGTGTAATGGAATAGAGG
1 TGTAATGGAATAGAAGTGTAATGGAATAGAGG
37229041 TGTAAT
1 TGTAAT
37229047 AGCAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.34
Consensus pattern (32 bp):
TGTAATGGAATAGAAGTGTAATGGAATAGAGG
Found at i:37229130 original size:39 final size:43
Alignment explanation
Indices: 37229025--37229134 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
37229015 GGAATAGATG
37229025 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
37229070 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
37229110 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
37229135 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:37229301 original size:18 final size:17
Alignment explanation
Indices: 37229280--37229314 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37229270 TTATTATTAA
*
37229280 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37229298 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37229315 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37229368 original size:157 final size:157
Alignment explanation
Indices: 37229167--37229483 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
37229157 CAGAATACCC
*
37229167 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
37229232 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
37229297 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
37229324 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
37229389 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
37229454 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
37229481 TTA
1 TTA
37229484 ATATTCTTAT
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:37229454 original size:16 final size:16
Alignment explanation
Indices: 37229417--37229458 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37229407 TTAATCATAT
*
37229417 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
37229433 TT-AAATATATTATAA
1 TTAAAATATATTATAA
37229448 TTAAAATATAT
1 TTAAAATATAT
37229459 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:37229465 original size:14 final size:15
Alignment explanation
Indices: 37229426--37229467 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37229416 TTTAAACATA
*
37229426 ATTATTATTAAATAT
1 ATTATAATTAAATAT
37229441 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
37229455 A-TATAATTTAATA
1 ATTATAATTAAATA
37229468 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:37242551 original size:28 final size:28
Alignment explanation
Indices: 37242511--37242565 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
37242501 ATGAATTTAA
37242511 CATAGTTTTGCATCTGCTCAAGTGCTTT
1 CATAGTTTTGCATCTGCTCAAGTGCTTT
37242539 CATAGTTTTGCATCTGCTCAAGTGCTT
1 CATAGTTTTGCATCTGCTCAAGTGCTT
37242566 CTACCAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (28 bp):
CATAGTTTTGCATCTGCTCAAGTGCTTT
Found at i:37244583 original size:13 final size:13
Alignment explanation
Indices: 37244565--37244594 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37244555 AAATAAGATT
37244565 TTAACTAAGAAAA
1 TTAACTAAGAAAA
*
37244578 TTAACTAAGAAGA
1 TTAACTAAGAAAA
37244591 TTAA
1 TTAA
37244595 AAGGAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.27
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:37252883 original size:49 final size:50
Alignment explanation
Indices: 37252830--37252953 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 50
37252820 TACCTCAGAT
* ** * *
37252830 ATGGTTTTACATGGGAGTTCTCATATCG-TGCCCATGCCAAGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCAAGTCCCAAAC
** * * *
37252879 ATGGTCTTACGGGGGACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCAAGTCCCAAAC
*
37252929 ATGGTCTTACATGAGACCTCTCATA
1 ATGGTCTTACATGGGACCTCTCATA
37252954 ACCTCAATAA
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
49 22 0.37
50 38 0.63
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCAAGTCCCAAAC
Found at i:37252931 original size:50 final size:50
Alignment explanation
Indices: 37252848--37252995 Score: 145
Period size: 50 Copynumber: 2.9 Consensus size: 50
37252838 ACATGGGAGT
* * * * * *
37252848 TCTCATATCG-TGCCCATGCCAAGTCCCAAACATGGTCTTACGGGGGACC
1 TCTCATCTCGATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACC
* *
37252897 TCTCATCTCGATGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACC
1 TCTCATCTCGATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACC
* *
37252947 TCTCATAACCTCAATAATACCAATGCCATGTCCCAGACATGGTCTTACA
1 TCTCAT---CTC---GATGCCAATGCCATGTCCCAGACATGGTCTTACA
37252996 TGGGATCTCA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.11
50 38 0.47
53 3 0.04
56 31 0.38
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.24
Consensus pattern (50 bp):
TCTCATCTCGATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACC
Found at i:37254472 original size:6 final size:6
Alignment explanation
Indices: 37254457--37254506 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
37254447 AATTAAAGAG
* * *
37254457 CAGA-A CAGATA CAGATA CAGATA CAGATG TAGA-A CATAT- CAGATA
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA
37254502 CAGAT
1 CAGAT
37254507 GCAATTTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
5 10 0.28
6 26 0.72
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
CAGATA
Found at i:37258915 original size:63 final size:62
Alignment explanation
Indices: 37258749--37258925 Score: 187
Period size: 63 Copynumber: 2.8 Consensus size: 62
37258739 ACACACGTCA
* * **
37258749 GTGTCCCTGGCCTGTGTGACCTTAAATCCAAAAAAATGAGTTACATGGCCTGGACACATGCTC
1 GTGTCCCTAGCCTGTGTGACCTTAAATCC-AAAAAATAAGTTACACAGCCTGGACACATGCTC
* * * * *
37258812 GTGTCCCTAGCCTGTATGACCATAAAATACAAACAATAAGTTACCCAGCCTGGACACATGCTC
1 GTGTCCCTAGCCTGTGTGACC-TTAAATCCAAAAAATAAGTTACACAGCCTGGACACATGCTC
* * * *
37258875 GTGTCCTTCGCCTGTGTG-CCTTTAATCCAAAAATAGTAAGTTA-ACAACCTG
1 GTGTCCCTAGCCTGTGTGACCTTAAATCCAAAAA-A-TAAGTTACACAGCCTG
37258926 CCACATGGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
61 9 0.10
62 9 0.10
63 69 0.74
64 6 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (62 bp):
GTGTCCCTAGCCTGTGTGACCTTAAATCCAAAAAATAAGTTACACAGCCTGGACACATGCTC
Found at i:37264679 original size:24 final size:25
Alignment explanation
Indices: 37264652--37264707 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
37264642 TAAAGTAAAT
37264652 TAATTAGATT-AAAATTCT-CACACA
1 TAATTA-ATTCAAAATTCTACACACA
* *
37264676 TAATATAATTCAGAATTCTATACACA
1 TAAT-TAATTCAAAATTCTACACACA
37264702 TAATTA
1 TAATTA
37264708 CATATGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 7 0.26
25 11 0.41
26 9 0.33
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (25 bp):
TAATTAATTCAAAATTCTACACACA
Found at i:37267534 original size:98 final size:98
Alignment explanation
Indices: 37267360--37267556 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
37267350 GTACAATAAA
*
37267360 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
37267425 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* *
37267458 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
37267523 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
37267556 A
1 A
37267557 TTATTTTTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:37268890 original size:19 final size:19
Alignment explanation
Indices: 37268866--37268978 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
37268856 AATCATATAT
37268866 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
37268885 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
37268904 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37268923 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
37268944 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37268963 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37268979 CTCAAAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37268953 original size:40 final size:40
Alignment explanation
Indices: 37268866--37268977 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
37268856 AATCATATAT
*
37268866 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
37268904 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
37268944 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
37268978 CCTCAAAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 28 0.41
40 41 0.59
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:37269552 original size:172 final size:174
Alignment explanation
Indices: 37269364--37269698 Score: 391
Period size: 172 Copynumber: 1.9 Consensus size: 174
37269354 ATTTTAATCC
* * * *
37269364 GCTCTACTGCAACTTCAGGGAGATAGGAT-TATCAGCTTTAATCTGCTCCACTGCAACTTCAGGG
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTAT-AACTTTAATCCGCTCCACTGCAACTTCAGGG
* *
37269428 AGATAAGATT-T-GCCATCTTCAGTCTGCCTCACTGTAACTTCAGG-AGATAAGACTTG-CATAC
65 AGATAAGATTGTCG-CAT-TT-AATCTGCCTCACTGCAACTTCAGGAAGATAAGACTTGTCAT-C
*
37269489 TT-AGTCTTGTC-CACCGCAACTTCAGG-GAGATAAGACTAGATGCGATCT
126 TTCAGTC-TGCCTCACCGCAACTTCAGGAG-GATAAGACTAGATGCGATCT
* * * *
37269537 GCTCT-CTGTAACTTCAGAGAGATAAGATCTGTAATTTTATTCCGCTCCACTGCAACTTCAGGGA
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTATAACTTTAATCCGCTCCACTGCAACTTCAGGGA
* * * *
37269601 GATAGGATTGTCGGATTTAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTTGTCATCTTCAG
66 GATAAGATTGTCGCATTTAATCTGCCTCACTGCAACTTCAGGAAGATAAGACTTGTCATCTTCAG
* *
37269666 TCTGCCTCACTGTAACTTCAGGAGGATAAGACT
131 TCTGCCTCACCGCAACTTCAGGAGGATAAGACT
37269699 TGCTTACTTA
Statistics
Matches: 137, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
171 21 0.15
172 75 0.55
173 39 0.28
174 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (174 bp):
GCTCTACTGCAACTTCAGAGAGATAAGATCTATAACTTTAATCCGCTCCACTGCAACTTCAGGGA
GATAAGATTGTCGCATTTAATCTGCCTCACTGCAACTTCAGGAAGATAAGACTTGTCATCTTCAG
TCTGCCTCACCGCAACTTCAGGAGGATAAGACTAGATGCGATCT
Found at i:37269558 original size:216 final size:217
Alignment explanation
Indices: 37269181--37269843 Score: 1042
Period size: 217 Copynumber: 3.1 Consensus size: 217
37269171 AGGAATTAGT
* * * * *
37269181 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCCTCACTGC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* ** * *
37269246 AACTTCAGGAGGATAAGACTTGCTTCCTTAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
* * * *
37269311 GATGTGATCTGCTCTCTGCAACTTTAGAGAGAGAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
*
37269376 CTTCAGGGAGATAGGATTATCA
196 CTTCAGGGAGATAGGATTGTCA
37269398 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
*
37269463 AACTTCAGGA-GATAAGACTTGCATACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
37269527 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTATTCCGCTCCACTGCAA
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
*
37269592 CTTCAGGGAGATAGGATTGTCG
196 CTTCAGGGAGATAGGATTGTCA
* * * *
37269614 GATTTAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTTGTCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
*
37269679 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCATCGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
37269744 GATGCGATCTACTCTCTGCAACTTCAGAGGGATAAGATCTATGATTTTAATCCGCTCCACTGCAA
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
*
37269809 CTTCAGGGAGATATGATTGTCCA
196 CTTCAGGGAGATAGGATTGT-CA
37269832 -CTTTAATCTGCT
1 GCTTTAATCTGCT
37269844 TCCCACTATC
Statistics
Matches: 409, Mismatches: 35, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
216 197 0.48
217 211 0.52
218 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTCA
Found at i:37269810 original size:44 final size:44
Alignment explanation
Indices: 37269186--37269821 Score: 325
Period size: 44 Copynumber: 14.7 Consensus size: 44
37269176 TTAGTGCTTC
* *
37269186 AATCTACTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATG--AT-TTT
* *
37269231 AGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGA-CT-TGCTTCCTT
1 AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATCTATGATT--TT
* * * *
37269275 AGTCTACTCCACTGCAACTTTAGGGAGATAAGA-CTA-GA-TGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGATTTT
* * * * * *
37269316 GATCTGCT-CTCTGCAACTTTAGAGAGAGAAGATCTGTGATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGATTTT
* * * * *
37269359 AATCCGCTCTACTGCAACTTCAGGGAGATAGGAT-TATCAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGA-TTTT
*
37269403 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATG--AT-TTT
* * *
37269448 AGTCTGC-CTCACTGTAACTTCA-GGAGATAAGA-CT-TGCATACTT
1 AATCTGCTC-CACTGCAACTTCAGGGAGATAAGATCTATG-AT-TTT
* * **
37269491 AGTCTTG-TCCACCGCAACTTCAGGGAGATAAGA-CTA-GA-TGC
1 AATC-TGCTCCACTGCAACTTCAGGGAGATAAGATCTATGATTTT
* * * * * *
37269532 GATCTGCT-CTCTGTAACTTCAGAGAGATAAGATCTGTAATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGATTTT
* * * *
37269575 ATTCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGTCGGA-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT--GATTTT
* * * * * *
37269619 AATCTGCTTCACTGCAACTTCAGGAAGATAAGATTTGTCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGAT-TTT
* * *
37269664 AGTCTGC-CTCACTGTAACTTCA-GGAGGATAAGA-CT-TGCTTACTT
1 AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATCTATGATT--TT
* **
37269708 AGTCTTG-TCCA-TCGCAACTTCAGGGAGATAAGA-CTA-GA-TGC
1 AATC-TGCTCCACT-GCAACTTCAGGGAGATAAGATCTATGATTTT
* * *
37269749 GATCTACT-CTCTGCAACTTCAGAGG-GATAAGATCTATGATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGAGATAAGATCTATGATTTT
*
37269792 AATCCGCTCCACTGCAACTTCAGGGAGATA
1 AATCTGCTCCACTGCAACTTCAGGGAGATA
37269822 TGATTGTCCA
Statistics
Matches: 453, Mismatches: 90, Indels: 97
0.71 0.14 0.15
Matches are distributed among these distances:
40 62 0.14
41 22 0.05
42 7 0.02
43 56 0.12
44 215 0.47
45 91 0.20
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATGATTTT
Found at i:37269990 original size:132 final size:132
Alignment explanation
Indices: 37269836--37270315 Score: 818
Period size: 132 Copynumber: 3.6 Consensus size: 132
37269826 TGTCCACTTT
* * *
37269836 AATCTGCTTCCCACTATCTTGGAAAGATATGATTTG-TCATCTTCGATCTGCTCCACTACTGCTT
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCT-GTCTTCGATCTGCTCCACTACTGCTT
37269900 AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGC
65 AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGC
37269965 TTA
130 TTA
* * *
37269968 AATCTGCTTCCCACTCTCTTGGAACGATAAGCTTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
37270033 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGCT
37270098 TA
131 TA
* * *
37270100 AATCTGCTTCCCACTCTCTTGGAACGATAAGCTTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
37270165 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGCT
37270230 TA
131 TA
* * * * *
37270232 AATCTGATTCCCACTATCTTCGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGTTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
37270297 GGGAGATAAGATCTACAAT
66 GGGAGATAAGATCTACAAT
37270316 TTTTACTTAT
Statistics
Matches: 333, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
132 332 1.00
133 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTTGGTGGCT
TA
Found at i:37270041 original size:44 final size:44
Alignment explanation
Indices: 37269875--37270174 Score: 134
Period size: 44 Copynumber: 6.8 Consensus size: 44
37269865 TGATTTGTCA
* * * * **
37269875 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG-ATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGCTTC-GCTG
* * * * * * * *
37269919 TCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTT-GGTG
1 TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAA-GCTTCGCTG
* *
37269963 GCTTAAATCTGCTTCCCACT-CT-CTT-GGAACGATAAGCTTCGCTG
1 TCTTCAATCTGC-T-CCACTACTGCTTAGGAA-GATAAGCTTCGCTG
* * * * **
37270007 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG-ATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGCTTC-GCTG
* * * * * * * *
37270051 TCTTCAACCTACTCCGCTGCTGCTCAGGAAAACAAGGCTT-GGTG
1 TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAA-GCTTCGCTG
* *
37270095 GCTTAAATCTGCTTCCCACT-CT-CTT-GGAACGATAAGCTTCGCTG
1 TCTTCAATCTGC-T-CCACTACTGCTTAGGAA-GATAAGCTTCGCTG
* *
37270139 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAAG
37270175 ATCTACAATC
Statistics
Matches: 179, Mismatches: 58, Indels: 38
0.65 0.21 0.14
Matches are distributed among these distances:
42 10 0.06
43 24 0.13
44 121 0.68
45 14 0.08
46 10 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGCTTCGCTG
Found at i:37271549 original size:5 final size:6
Alignment explanation
Indices: 37271527--37271571 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
37271517 TTGGCCTCTC
* *
37271527 CTTTTA CTTTTT CTTTTT CTTTTTT CCTTTTT CCTTTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT C-TTTTT -CTTTTT CTTTTT CTTTTT C
37271572 CTCTTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 23 0.68
7 10 0.29
8 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:37271556 original size:20 final size:19
Alignment explanation
Indices: 37271528--37271583 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
37271518 TGGCCTCTCC
*
37271528 TTTTACTTTTTCTTTTTCTT
1 TTTTCCTTTTTCTTTTTC-T
*
37271548 TTTTCCTTTTTCCTTTTCT
1 TTTTCCTTTTTCTTTTTCT
37271567 TTTTCCTCTTTT-TTTTT
1 TTTTCCT-TTTTCTTTTT
37271584 GAAATATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTCCTTTTTCTTTTTCT
Found at i:37271572 original size:12 final size:12
Alignment explanation
Indices: 37271535--37271582 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
37271525 TCCTTTTACT
*
37271535 TTTTCTTTTTCTT
1 TTTTCTTTTTC-C
37271548 TTTTCCTTTTTCC
1 TTTT-CTTTTTCC
37271561 TTTTCTTTTTCC
1 TTTTCTTTTTCC
37271573 TCTTT-TTTTT
1 T-TTTCTTTTT
37271583 TGAAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.44
13 11 0.34
14 7 0.22
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTCC
Found at i:37271577 original size:14 final size:13
Alignment explanation
Indices: 37271535--37271583 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
37271525 TCCTTTTACT
*
37271535 TTTTCTTTTTCTT
1 TTTTCTTTTTCTC
37271548 TTTTCCTTTTTC-C
1 TTTT-CTTTTTCTC
37271561 TTTTCTTTTTCCTC
1 TTTTCTTTTT-CTC
37271575 TTTT-TTTTT
1 TTTTCTTTTT
37271584 GAAATATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 6 0.19
13 14 0.44
14 12 0.38
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTCTC
Found at i:37274553 original size:113 final size:113
Alignment explanation
Indices: 37274350--37274574 Score: 432
Period size: 113 Copynumber: 2.0 Consensus size: 113
37274340 AACGTGAAGC
* *
37274350 AACTGTAAGCAGGATTCCAAAACTGGGCGAGGGCTCGAAACAAATGTTTGTCTACCTTCACATCA
1 AACTATAAGCAGGATTCCAAAACTGGGCGAGGGCTCGAAACAAATGTTTGTCCACCTTCACATCA
37274415 AGCAAATAAGGCAAGTCCCCATAATTGTCGTAAAATAACTACCTAGCA
66 AGCAAATAAGGCAAGTCCCCATAATTGTCGTAAAATAACTACCTAGCA
37274463 AACTATAAGCAGGATTCCAAAACTGGGCGAGGGCTCGAAACAAATGTTTGTCCACCTTCACATCA
1 AACTATAAGCAGGATTCCAAAACTGGGCGAGGGCTCGAAACAAATGTTTGTCCACCTTCACATCA
37274528 AGCAAATAAGGCAAGTCCCCATAATTGTCGTAAAATAACTACCTAGC
66 AGCAAATAAGGCAAGTCCCCATAATTGTCGTAAAATAACTACCTAGC
37274575 CTCATTATTC
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 110 1.00
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (113 bp):
AACTATAAGCAGGATTCCAAAACTGGGCGAGGGCTCGAAACAAATGTTTGTCCACCTTCACATCA
AGCAAATAAGGCAAGTCCCCATAATTGTCGTAAAATAACTACCTAGCA
Found at i:37275954 original size:98 final size:98
Alignment explanation
Indices: 37275780--37275976 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
37275770 GTACAATAAA
*
37275780 ACTTTAAAAGAACATCCACTCATCCAGGATTTAAGAAATCACACCCAATACATTAGGACACGATT
1 ACTTTAAAAGAACATCCACTCATCCAGGATTTAAGAAATCACACCCAATACATTAGGACACAATT
* * *
37275845 CCTCTAGAATCCTAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCATTT
* *
37275878 ACTTTAAAAGAACATCCACTCATCCAGGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAGGATTTAAGAAATCACACCCAATACATTAGGACACAATT
*
37275943 CCTTTAAAATCCCAAACTCGGAATATTTCATTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCATTT
37275976 A
1 A
37275977 TTATTTTTAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAGGATTTAAGAAATCACACCCAATACATTAGGACACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCATTT
Found at i:37277313 original size:19 final size:19
Alignment explanation
Indices: 37277289--37277401 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
37277279 AATCATATAT
37277289 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
37277308 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
37277327 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37277346 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
37277367 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37277386 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37277402 CTCAAAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37277376 original size:40 final size:40
Alignment explanation
Indices: 37277289--37277400 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
37277279 AATCATATAT
*
37277289 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
37277327 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
37277367 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
37277401 CCTCAAAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 28 0.41
40 41 0.59
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:37280214 original size:16 final size:16
Alignment explanation
Indices: 37280193--37280234 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37280183 TTATTAAATT
*
37280193 ATATATTTTAATTATA
1 ATATATTTTAATAATA
37280209 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
37280224 AT-TATGTTTAA
1 ATATAT-TTTAA
37280235 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:37280219 original size:15 final size:15
Alignment explanation
Indices: 37280184--37280225 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37280174 TTAAGAATTT
*
37280184 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37280198 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37280212 TATTTAATAATAAT
1 TATTTAATTATAAT
37280226 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37280348 original size:157 final size:157
Alignment explanation
Indices: 37280168--37280484 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
37280158 ATAAGAATAT
*
37280168 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
37280233 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
37280298 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
37280325 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
37280390 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
37280455 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
37280482 TAA
1 TAA
37280485 GGGTATTCTG
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:37280365 original size:18 final size:17
Alignment explanation
Indices: 37280337--37280371 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37280327 ATTATTAAGA
*
37280337 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
37280354 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
37280372 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:37280405 original size:75 final size:75
Alignment explanation
Indices: 37280169--37280407 Score: 191
Period size: 75 Copynumber: 3.1 Consensus size: 75
37280159 TAAGAATATT
*
37280169 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
37280234 AATATGATTA
66 AATATGATTA
* ** * * * * *
37280244 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT
1 AATTATTAAGAATT-TTATT-A-AA--TTA-TATATTTTAATTAA-AATATATTTAATAATAATT
**** * * *
37280306 -TACCAAAACAAAT-TTCTGCT
59 AT-GTTTAA-ATATGAT-T--A
37280326 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
37280391 AATATGATTA
66 AATATGATTA
37280401 AATTATT
1 AATTATT
37280408 TATTATTGAT
Statistics
Matches: 116, Mismatches: 31, Indels: 34
0.64 0.17 0.19
Matches are distributed among these distances:
75 22 0.19
76 16 0.14
77 8 0.07
78 16 0.14
79 16 0.14
80 8 0.07
81 15 0.13
82 15 0.13
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:37280562 original size:39 final size:40
Alignment explanation
Indices: 37280519--37280623 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
37280509 TTCCATTATG
37280519 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
37280558 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
37280603 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
37280624 ACACATCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:37280617 original size:45 final size:44
Alignment explanation
Indices: 37280517--37280626 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
37280507 TTTTCCATTA
37280517 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
37280556 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
37280601 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
37280627 CATCTATTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:37280626 original size:16 final size:16
Alignment explanation
Indices: 37280605--37280674 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
37280595 TTGATTTGCT
*
37280605 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
* *
37280621 ATTACACATCTATTCC
1 ATTACACCTCTAATCC
37280637 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
37280653 AATACACTTCTAATCC
1 ATTACACCTCTAATCC
*
37280669 AATACA
1 ATTACA
37280675 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:37280646 original size:32 final size:32
Alignment explanation
Indices: 37280605--37280674 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
37280595 TTGATTTGCT
* * *
37280605 ATTACACCTCTATTCCATTACACATCTATTCC
1 ATTACACCTCTAATCCAATACACATCTAATCC
*
37280637 ATTACACCTCTAATCCAATACACTTCTAATCC
1 ATTACACCTCTAATCCAATACACATCTAATCC
*
37280669 AATACA
1 ATTACA
37280675 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (32 bp):
ATTACACCTCTAATCCAATACACATCTAATCC
Found at i:37282330 original size:75 final size:73
Alignment explanation
Indices: 37282251--37282493 Score: 252
Period size: 75 Copynumber: 3.2 Consensus size: 73
37282241 TCAACTACTT
* * * * *
37282251 TGGGCATACCATTCTATTTATATGTTTATCCAACTAGCACTGGGCATAACTTTCGTTAGTTTATC
1 TGGGCACACCATTATATTT-T-TGTTTATCCAACTAGCGCTGGGCACAACTTTCGTCAGTTTATC
37282316 TGACTAGTGC
64 TGACTAGTGC
** * *
37282326 TGGGCACACCATTATATTGCTCGGTTTATCCAACTAGCGCTAGGCACACCTTTCGTCAGTTTATC
1 TGGGCACACCATTATATT--TTTGTTTATCCAACTAGCGCTGGGCACAACTTTCGTCAGTTTATC
* *
37282391 TTACTAGTGT
64 TGACTAGTGC
* * ** **
37282401 TAGGCACACCATTATATTTTTCGATTTATCTAACTAGCGCTGGGTGCAACTTTTATCAGTTTATC
1 TGGGCACACCATTATATTTTT-G-TTTATCCAACTAGCGCTGGGCACAACTTTCGTCAGTTTATC
*
37282466 TGACTAGTGA
64 TGACTAGTGC
* *
37282476 TAGGCACATCATTATATT
1 TGGGCACACCATTATATT
37282494 CGTCAAATTA
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
73 1 0.01
74 1 0.01
75 137 0.98
77 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (73 bp):
TGGGCACACCATTATATTTTTGTTTATCCAACTAGCGCTGGGCACAACTTTCGTCAGTTTATCTG
ACTAGTGC
Found at i:37282353 original size:40 final size:39
Alignment explanation
Indices: 37282309--37282441 Score: 121
Period size: 40 Copynumber: 3.5 Consensus size: 39
37282299 ACTTTCGTTA
* * *
37282309 GTTTATCTGACTAGTGCTGGGCACACCATTATATTGCTCG
1 GTTTATCTAACTAGCGCTAGGCACACCATTATATTG-TCG
* * *
37282349 GTTTATCCAACTAGCGCTAGGCACACC--T-T-TCGTCA
1 GTTTATCTAACTAGCGCTAGGCACACCATTATATTGTCG
* * * *
37282384 GTTTATCTTACTAGTGTTAGGCACACCATTATATTTTTCG
1 GTTTATCTAACTAGCGCTAGGCACACCATTATA-TTGTCG
*
37282424 ATTTATCTAACTAGCGCT
1 GTTTATCTAACTAGCGCT
37282442 GGGTGCAACT
Statistics
Matches: 71, Mismatches: 17, Indels: 10
0.72 0.17 0.10
Matches are distributed among these distances:
35 25 0.35
36 2 0.03
37 2 0.03
38 2 0.03
40 40 0.56
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (39 bp):
GTTTATCTAACTAGCGCTAGGCACACCATTATATTGTCG
Found at i:37282746 original size:18 final size:18
Alignment explanation
Indices: 37282723--37282759 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
37282713 TCACTAGGTG
*
37282723 TTAGTGTGATTCTTTAAA
1 TTAGTGTAATTCTTTAAA
37282741 TTAGTGTAATTCTTTAAA
1 TTAGTGTAATTCTTTAAA
37282759 T
1 T
37282760 GAATGAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (18 bp):
TTAGTGTAATTCTTTAAA
Found at i:37283113 original size:192 final size:192
Alignment explanation
Indices: 37282786--37283172 Score: 774
Period size: 192 Copynumber: 2.0 Consensus size: 192
37282776 TTTTTGAACC
37282786 CTTCTTTGAATGTTGGTTAGGTACTTACTTTTGTTCAATGACTCAGCATCCACGACAAATCTCGA
1 CTTCTTTGAATGTTGGTTAGGTACTTACTTTTGTTCAATGACTCAGCATCCACGACAAATCTCGA
37282851 ACTCAATGTTGGTGAAGTATTTCTTTTTGTGTCATGACATGTACCTAGGATAATGATAATTTGAG
66 ACTCAATGTTGGTGAAGTATTTCTTTTTGTGTCATGACATGTACCTAGGATAATGATAATTTGAG
37282916 TAATAGTCTTCTGGTCTGTGGTTGAATCTAGTATAAGTTACTTATATTGAAAGTCATATAAA
131 TAATAGTCTTCTGGTCTGTGGTTGAATCTAGTATAAGTTACTTATATTGAAAGTCATATAAA
37282978 CTTCTTTGAATGTTGGTTAGGTACTTACTTTTGTTCAATGACTCAGCATCCACGACAAATCTCGA
1 CTTCTTTGAATGTTGGTTAGGTACTTACTTTTGTTCAATGACTCAGCATCCACGACAAATCTCGA
37283043 ACTCAATGTTGGTGAAGTATTTCTTTTTGTGTCATGACATGTACCTAGGATAATGATAATTTGAG
66 ACTCAATGTTGGTGAAGTATTTCTTTTTGTGTCATGACATGTACCTAGGATAATGATAATTTGAG
37283108 TAATAGTCTTCTGGTCTGTGGTTGAATCTAGTATAAGTTACTTATATTGAAAGTCATATAAA
131 TAATAGTCTTCTGGTCTGTGGTTGAATCTAGTATAAGTTACTTATATTGAAAGTCATATAAA
37283170 CTT
1 CTT
37283173 TAGAATTATG
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
192 195 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (192 bp):
CTTCTTTGAATGTTGGTTAGGTACTTACTTTTGTTCAATGACTCAGCATCCACGACAAATCTCGA
ACTCAATGTTGGTGAAGTATTTCTTTTTGTGTCATGACATGTACCTAGGATAATGATAATTTGAG
TAATAGTCTTCTGGTCTGTGGTTGAATCTAGTATAAGTTACTTATATTGAAAGTCATATAAA
Found at i:37287965 original size:35 final size:35
Alignment explanation
Indices: 37287926--37288002 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 35
37287916 TAATTAAATC
*
37287926 ATAAG-TGACTATCAAACAAGGGGCTTATTAGGCAA
1 ATAAGCTGA-TATCAAACAAGGGGCTTATTAGGAAA
37287961 ATAAGCCATTGATATCAAACAAGGGGCTTATTAGGAAA
1 ATAAG-C--TGATATCAAACAAGGGGCTTATTAGGAAA
37287999 ATAA
1 ATAA
37288003 ACCATTGATC
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
35 5 0.14
38 29 0.78
39 3 0.08
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (35 bp):
ATAAGCTGATATCAAACAAGGGGCTTATTAGGAAA
Found at i:37287977 original size:38 final size:38
Alignment explanation
Indices: 37287935--37288011 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
37287925 CATAAGTGAC
* *
37287935 TATCAAACAAGGGGCTTATTAGGCAAATAAGCCATTGA
1 TATCAAACAAGGGGCTTATTAGGAAAATAAACCATTGA
37287973 TATCAAACAAGGGGCTTATTAGGAAAATAAACCATTGA
1 TATCAAACAAGGGGCTTATTAGGAAAATAAACCATTGA
37288011 T
1 T
37288012 CAAGTTACTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (38 bp):
TATCAAACAAGGGGCTTATTAGGAAAATAAACCATTGA
Found at i:37289523 original size:74 final size:74
Alignment explanation
Indices: 37289340--37289588 Score: 236
Period size: 75 Copynumber: 3.3 Consensus size: 74
37289330 GATTTATGCA
* * * * * * **
37289340 ACTACTGCTGGACACACCATTATATTTGTCGGTTGATACGACTAGTGTTTG-GCAAAACTTTCAT
1 ACTAGTGCTGGGCACACCATTATATTTTTCGGTTTATACGACTACTG-CTGAGCGCAACTTTCAT
* *
37289404 CAATTTTTCTG
65 CAA-TTATCTT
* * *
37289415 ACTAGTGTTGGGCACACCATTATAGTTTTT-GGTTTTTACGACTACTGCTGAGCGCAAGTTTCAT
1 ACTAGTGCTGGGCACACCATTATA-TTTTTCGGTTTATACGACTACTGCTGAGCGCAACTTTCAT
37289479 CAATTATCTT
65 CAATTATCTT
* * *
37289489 ACTAGTGCTGGGCACACCATTATATTTTTCGGTTTATCCGACTAGC-GCT-AGGTGCAACTTTCG
1 ACTAGTGCTGGGCACACCATTATATTTTTCGGTTTATACGACTA-CTGCTGA-GCGCAACTTTCA
*
37289552 TCAGTTTATCTT
64 TCA-ATTATCTT
* * *
37289564 ACTAGTGCAGGGAACATCATTATAT
1 ACTAGTGCTGGGCACACCATTATAT
37289589 CTATCGATTT
Statistics
Matches: 145, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
73 6 0.04
74 57 0.39
75 78 0.54
76 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (74 bp):
ACTAGTGCTGGGCACACCATTATATTTTTCGGTTTATACGACTACTGCTGAGCGCAACTTTCATC
AATTATCTT
Found at i:37289618 original size:75 final size:75
Alignment explanation
Indices: 37289482--37289620 Score: 188
Period size: 75 Copynumber: 1.9 Consensus size: 75
37289472 GTTTCATCAA
* * * * * * *
37289482 TTATCTTACTAGTGCTGGGCACACCATTATATTTTTCGGTTTATCCGACTAGCGCTAGGTGCAAC
1 TTATCTTACTAGTGCAGGGAACACCATTATATCTATCGATTTATCCGACTAGCACGAGGTGCAAC
37289547 TTTCGTCAGT
66 TTTCGTCAGT
* * *
37289557 TTATCTTACTAGTGCAGGGAACATCATTATATCTATCGATTTATCCGATTAGCACGGGGTGCAA
1 TTATCTTACTAGTGCAGGGAACACCATTATATCTATCGATTTATCCGACTAGCACGAGGTGCAA
37289621 AACTTGGTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 54 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (75 bp):
TTATCTTACTAGTGCAGGGAACACCATTATATCTATCGATTTATCCGACTAGCACGAGGTGCAAC
TTTCGTCAGT
Found at i:37291586 original size:25 final size:25
Alignment explanation
Indices: 37291558--37291616 Score: 100
Period size: 25 Copynumber: 2.3 Consensus size: 25
37291548 AAACAAAAAT
*
37291558 AATCCAAAGTCCATGTCCAAATCCA
1 AATCCAAAGTCCATGTCCAAAACCA
37291583 AATCCAAAGTCCATGTCCAAAACCA
1 AATCCAAAGTCCATGTCCAAAACCA
37291608 AAGTCCAAA
1 AA-TCCAAA
37291617 ATAATTAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 26 0.81
26 6 0.19
ACGTcount: A:0.44, C:0.31, G:0.08, T:0.17
Consensus pattern (25 bp):
AATCCAAAGTCCATGTCCAAAACCA
Found at i:37292233 original size:37 final size:37
Alignment explanation
Indices: 37292177--37292272 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
37292167 TTTCAGTAGG
* * *
37292177 CATGCTTTACAAGCAAATCAGAATATCAGAAATATGA
1 CATGCTTTACATGCAAATCAGAATATAAAAAATATGA
* *
37292214 CATGCTTTACATGCGAATCAGAATATAAAAAATATGG
1 CATGCTTTACATGCAAATCAGAATATAAAAAATATGA
37292251 CATG-TTTAACATGCAAATCAGA
1 CATGCTTT-ACATGCAAATCAGA
37292273 TCTCAATATG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 3 0.06
37 49 0.94
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (37 bp):
CATGCTTTACATGCAAATCAGAATATAAAAAATATGA
Found at i:37295311 original size:50 final size:50
Alignment explanation
Indices: 37295133--37295303 Score: 225
Period size: 50 Copynumber: 3.4 Consensus size: 50
37295123 ATTTGGGTAA
* *
37295133 AGAGGTCCAATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
37295183 AGAGGTCCCATGTAAGACCGTGTCTGGAACAAGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
37295233 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
37295283 AGAACTCCCATGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
37295304 ATATGGGATA
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 103 1.00
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:37295323 original size:100 final size:100
Alignment explanation
Indices: 37295144--37295324 Score: 227
Period size: 100 Copynumber: 1.8 Consensus size: 100
37295134 GAGGTCCAAT
* * * ** * * *
37295144 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCGTGTCTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATATG
* *
37295209 GAACAAGGCGTTGGCACCGAGATGAGAGGTCCCCC
66 GAACAAGACATTGGCACCGAGATGAGAGGTCCCCC
* *
37295244 GTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATATATG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATATG
* * *
37295309 GGATATGACATTGGCA
66 GAACAAGACATTGGCA
37295325 GTACAGGAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 66 1.00
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATATG
GAACAAGACATTGGCACCGAGATGAGAGGTCCCCC
Found at i:37296982 original size:29 final size:29
Alignment explanation
Indices: 37296950--37297007 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
37296940 TGTTATTGAG
37296950 ATAATTTTTTATTGTTCTTAAAGGATGGT
1 ATAATTTTTTATTGTTCTTAAAGGATGGT
37296979 ATAATTTTTTATTGTTCTTAAAGGATGGT
1 ATAATTTTTTATTGTTCTTAAAGGATGGT
37297008 GATCGAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.52
Consensus pattern (29 bp):
ATAATTTTTTATTGTTCTTAAAGGATGGT
Found at i:37299541 original size:13 final size:11
Alignment explanation
Indices: 37299513--37299555 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
37299503 AGTTAAAAAT
37299513 TATTTTATTAA
1 TATTTTATTAA
37299524 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
37299537 TA-TTTATTAT
1 TATTTTATTAA
37299547 TATTTTATT
1 TATTTTATT
37299556 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:37299542 original size:23 final size:23
Alignment explanation
Indices: 37299516--37299559 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37299506 TAAAAATTAT
37299516 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
37299539 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
37299560 AAATGGTAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:37301837 original size:29 final size:31
Alignment explanation
Indices: 37301786--37301844 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 31
37301776 TAATGTTTTT
37301786 AAAATATATTTTAATTTATAA-TTTAACATAA
1 AAAATATATTTTAA-TTATAATTTTAACATAA
37301817 AAAATATATTATTAA-TA-AATTTTAACAT
1 AAAATATATT-TTAATTATAATTTTAACAT
37301845 TTTGTGATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 2 0.08
30 10 0.38
31 10 0.38
32 4 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (31 bp):
AAAATATATTTTAATTATAATTTTAACATAA
Found at i:37307694 original size:26 final size:26
Alignment explanation
Indices: 37307659--37307709 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
37307649 TTCTTTTTGA
*
37307659 TTTTACATATT-TATTATTTAATTATT
1 TTTTAAATATTATATT-TTTAATTATT
37307685 TTTTAAATATTATATTTTTAATTAT
1 TTTTAAATATTATATTTTTAATTAT
37307710 AATAATTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTAAATATTATATTTTTAATTATT
Done.