Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 121 of 161
Found at i:38362435 original size:14 final size:15
Alignment explanation
Indices: 38362407--38362439 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
38362397 AAGGTTTATA
38362407 GATTATGGAATTAGG
1 GATTATGGAATTAGG
38362422 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
38362436 GATT
1 GATT
38362440 CTAGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:38362667 original size:81 final size:74
Alignment explanation
Indices: 38362519--38362693 Score: 224
Period size: 74 Copynumber: 2.3 Consensus size: 74
38362509 TTTGATGTTA
*
38362519 GGTTAGGGTTTAGGGTTTAGATTAATTAGTATGTTTTAATTTATATTAAATAAGGTTTAGGGGTT
1 GGTTAGGGTTTAGGGTTTAGATTAATTAGTATGTTTTAATTTATATTAAATAAGATTTAGGGGTT
*
38362584 AGGTATTCG
66 AGGGATTCG
*
38362593 GGTTAGGGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAGCTTATTTAA
1 GGTTAGGGTTTAGGGTTTAGATTAATTAGTATGTTTTAA-TT-TATATTAAATAAG---ATTT-A
* *
38362658 TTGGTTTAGGGATTCG
60 -GGGGTTAGGGATTCG
* *
38362674 GGTTAGAGTTTAGGGGTTAG
1 GGTTAGGGTTTAGGGTTTAG
38362694 GGATTCGAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
74 38 0.44
75 2 0.02
76 13 0.15
79 3 0.03
80 1 0.01
81 30 0.34
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.45
Consensus pattern (74 bp):
GGTTAGGGTTTAGGGTTTAGATTAATTAGTATGTTTTAATTTATATTAAATAAGATTTAGGGGTT
AGGGATTCG
Found at i:38362693 original size:27 final size:27
Alignment explanation
Indices: 38362663--38362724 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
38362653 TTTAATTGGT
*
38362663 TTAGGGATTCGGGTTAGAG-TTTAGGGG
1 TTAGGGATTCGAGTTAGAGTTTTA-GGG
*
38362690 TTAGGGATTCGAGTTAGTGTTTTAGGG
1 TTAGGGATTCGAGTTAGAGTTTTAGGG
38362717 TT-GGGATT
1 TTAGGGATT
38362725 TAAGGTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 6 0.19
27 22 0.69
28 4 0.12
ACGTcount: A:0.18, C:0.03, G:0.40, T:0.39
Consensus pattern (27 bp):
TTAGGGATTCGAGTTAGAGTTTTAGGG
Found at i:38362732 original size:21 final size:22
Alignment explanation
Indices: 38362708--38362748 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
38362698 TCGAGTTAGT
*
38362708 GTTTTAGGGTT-GGGATTTAAG
1 GTTTAAGGGTTAGGGATTTAAG
*
38362729 GTTTAAGGGTTAGGGGTTTA
1 GTTTAAGGGTTAGGGATTTA
38362749 GGAGTTAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (22 bp):
GTTTAAGGGTTAGGGATTTAAG
Found at i:38363131 original size:15 final size:15
Alignment explanation
Indices: 38363113--38363160 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
38363103 TAGAATTAAT
38363113 AAATAAGTTTAAATA
1 AAATAAGTTTAAATA
38363128 AAATATA-TTTAAAT-
1 AAATA-AGTTTAAATA
*
38363142 --ATTAGTTTAAATA
1 AAATAAGTTTAAATA
38363155 AAATAA
1 AAATAA
38363161 TTTTTATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
11 1 0.04
12 9 0.35
15 15 0.58
16 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
AAATAAGTTTAAATA
Found at i:38363148 original size:27 final size:27
Alignment explanation
Indices: 38363080--38363163 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
38363070 AAACCATTTG
* *
38363080 ATATATTTAAATATTAATTTAAATAGA
1 ATATATTTAAATATTAGTTTAAATAAA
*
38363107 AT-TA-ATAAATA--AGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAAA
38363130 ATATATTTAAATATTAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAAA
38363157 ATA-ATTT
1 ATATATTT
38363164 TTATTCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
23 12 0.24
24 2 0.04
25 12 0.24
26 6 0.12
27 17 0.35
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (27 bp):
ATATATTTAAATATTAGTTTAAATAAA
Found at i:38364126 original size:5 final size:5
Alignment explanation
Indices: 38364116--38364141 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
38364106 TTTAAATTTG
38364116 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
38364142 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:38366289 original size:21 final size:21
Alignment explanation
Indices: 38366265--38366306 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
38366255 TTCTTTTAAC
38366265 TTTTATTT-TCTCATTAAATTA
1 TTTTATTTATC-CATTAAATTA
38366286 TTTTATTTATCCATTAAATTA
1 TTTTATTTATCCATTAAATTA
38366307 GTCAAGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATTTATCCATTAAATTA
Found at i:38368938 original size:43 final size:43
Alignment explanation
Indices: 38368840--38369025 Score: 229
Period size: 43 Copynumber: 4.4 Consensus size: 43
38368830 AAAAGTTATG
* *
38368840 TTTTTAGCGGCGTTTGTG-AAAAAGTGCCGCTAAA-AGTTAT--
1 TTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGA-TCATGA
* *
38368880 TTTTATAGCGGCGTTTGT-AATAGAAGCGCCGCTAAAGGTCATGA
1 TTTT-TAGCGGCGTTTGTGAA-AAAAGCGCCGCTAAAGATCATGA
**
38368924 TTTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGATCATGA
1 TTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGATCATGA
* *
38368967 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGACCATGA
1 TTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGATCATGA
*
38369010 TCTTTAGCGGCGTTTG
1 TTTTTAGCGGCGTTTG
38369026 GGGAAAAGTG
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
40 4 0.03
41 14 0.11
42 16 0.13
43 89 0.70
44 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGATCATGA
Found at i:38369325 original size:17 final size:17
Alignment explanation
Indices: 38369303--38369344 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
38369293 CTAAATTAAT
*
38369303 AGAAATGATGAAATTAG
1 AGAAATGATAAAATTAG
*
38369320 AGAAATGGTAAAATTAG
1 AGAAATGATAAAATTAG
*
38369337 ATAAATGA
1 AGAAATGA
38369345 GTCACATTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (17 bp):
AGAAATGATAAAATTAG
Found at i:38369772 original size:23 final size:20
Alignment explanation
Indices: 38369724--38369761 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
38369714 GTAGTGAGAA
38369724 TTTATTTTCTAAGAATAAAT
1 TTTATTTTCTAAGAATAAAT
*
38369744 TTTATTTTCTAGGAATAA
1 TTTATTTTCTAAGAATAA
38369762 TAATTTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (20 bp):
TTTATTTTCTAAGAATAAAT
Found at i:38375988 original size:22 final size:21
Alignment explanation
Indices: 38375948--38375987 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38375938 ATTGATTTGT
*
38375948 CCATTTTTAGGTTTGTTTTCA
1 CCATTTTTAAGTTTGTTTTCA
38375969 CCATTTTTAAGTTTGTTTT
1 CCATTTTTAAGTTTGTTTT
38375988 TTTCCTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.12, T:0.60
Consensus pattern (21 bp):
CCATTTTTAAGTTTGTTTTCA
Found at i:38377809 original size:6 final size:6
Alignment explanation
Indices: 38377798--38377826 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
38377788 ATCGCAAAGA
38377798 AAATAG AAATAG AAATAG AAATAG AAATA
1 AAATAG AAATAG AAATAG AAATAG AAATA
38377827 AAGAACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:38378631 original size:23 final size:23
Alignment explanation
Indices: 38378605--38378679 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
38378595 ATAAGTGCCA
38378605 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
38378628 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
38378650 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
38378673 CACTGAT
1 CACTGAT
38378680 CAATAACACT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 20 0.43
23 26 0.57
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:38385980 original size:23 final size:23
Alignment explanation
Indices: 38385954--38386051 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
38385944 ATAAGTGCCA
38385954 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
38385977 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
38386000 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
38386022 CACTGAAATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
38386045 CACTGAT
1 CACTGAT
38386052 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:38386019 original size:45 final size:45
Alignment explanation
Indices: 38385961--38386049 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
38385951 CCACACTGAT
* *
38385961 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
*
38386006 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGTTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
38386050 ATCAATAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:38395216 original size:24 final size:24
Alignment explanation
Indices: 38395189--38395237 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
38395179 AACAGTGTAT
38395189 TATTTTAAA-ATGTATTAA-ATAAAA
1 TATTTTAAATAT-T-TTAATATAAAA
38395213 TATTTTAAATATTTTAATATAAAA
1 TATTTTAAATATTTTAATATAAAA
38395237 T
1 T
38395238 TAAAGAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.17
24 17 0.74
25 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
TATTTTAAATATTTTAATATAAAA
Found at i:38395348 original size:16 final size:17
Alignment explanation
Indices: 38395315--38395356 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
38395305 ATTTTTATTA
*
38395315 AATTATATT-TAATAAT
1 AATTATATTAAAATAAT
38395331 AATTATATTAAAAT-AT
1 AATTATATTAAAATAAT
*
38395347 AATTAAATTA
1 AATTATATTA
38395357 GTTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTATATTAAAATAAT
Found at i:38395375 original size:61 final size:58
Alignment explanation
Indices: 38395271--38395410 Score: 172
Period size: 61 Copynumber: 2.3 Consensus size: 58
38395261 AATATAAAAT
* * *
38395271 TAATTATATTAAGAATATTACTAAATTATATATTATTTTTATTAAATTATATTTAATAA
1 TAATTATATTAA-AATATAATTAAATTATATATTATTTTTATTAAATCATATTTAATAA
* *
38395330 TAATTATATTAAAATATAATTAAATTAGTTATTTTTATTTTTATTACATCATATTTAATAA
1 TAATTATATTAAAATATAATTAAATTA--TA-TATTATTTTTATTAAATCATATTTAATAA
** *
38395391 TAATCCTATTAAAATTTAAT
1 TAATTATATTAAAATATAAT
38395411 AACAATAATT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
58 13 0.19
59 12 0.17
60 2 0.03
61 43 0.61
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (58 bp):
TAATTATATTAAAATATAATTAAATTATATATTATTTTTATTAAATCATATTTAATAA
Found at i:38415914 original size:35 final size:35
Alignment explanation
Indices: 38415866--38415964 Score: 108
Period size: 35 Copynumber: 2.8 Consensus size: 35
38415856 ATGTTACATG
* *
38415866 TATACCGTTTACACAGTGTCGCCCCAAAAGACTTG
1 TATACCGTTTACACAGTGTCGCCCCAAAAGACCTA
* * ** *
38415901 TTTACCGTTTACACTGTGTCATCCCAAAGGACCTA
1 TATACCGTTTACACAGTGTCGCCCCAAAAGACCTA
* * *
38415936 TATATCGTTTACACGGTGCCGCCCCAAAA
1 TATACCGTTTACACAGTGTCGCCCCAAAA
38415965 AACCAGTAGA
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (35 bp):
TATACCGTTTACACAGTGTCGCCCCAAAAGACCTA
Found at i:38416828 original size:57 final size:57
Alignment explanation
Indices: 38416761--38417246 Score: 312
Period size: 57 Copynumber: 8.6 Consensus size: 57
38416751 TCACACTTTC
* * * *
38416761 TTAAGATGGACTTTATATAATTCACCTATTTAAAGTGAAGCTAATAGTCACACATCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTCATAGTCACACCTCT
* * * * **
38416818 TTAACATGGACTCTATATGATTCACCTCTTTAAGGTGAAGTTCATAGTCATGCCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTCATAGTCACACCTCT
* * * * * * *
38416875 TTAAGATGGACTTTATGTAGTTCACTTTTTTTTAAAGTAAAGTTCATAATCACACCTCC
1 TTAAGATGGACTTTATATAATTCAC--CTCTTTAAAGTGAAGTTCATAGTCACACCTCT
* * *** ** *
38416934 TTAAAATGGAATTTATATAATTCACCTCTTT-AAG-GAAACACAAATAACCATACCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTC--ATAGTCACACCTCT
* * * * * * * * * *
38416991 TTAAGATGGATTTTATATAATTTATCTCTCT-GAGGGAAAATTGATAATCACGCCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTG-AAGTTCATAGTCACACCTCT
* * * * * *
38417048 TTAATATGGTCTTTATATAATTCACCTC-TTAAAG-GAAAAATTGATAGTCACGCCTTTT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTG--AAGTTCATAGTCACACC-TCT
* * * * * *
38417106 TTAAAATGGACTTTATAGAATTCACCTCTTTAAGGAGAAGTTGATAGTCAAACCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTCATAGTCACACCTCT
* * ** * *
38417163 TTAAGATGGAC------TAATTCGCCTCTTTAAGGCAAAGTTGATAGTCACATCT-T
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTCATAGTCACACCTCT
* *
38417213 TCTAATATGGACTTTATATAATCCACCTCTTTAA
1 T-TAAGATGGACTTTATATAATTCACCTCTTTAA
38417247 GGTTTTAAGT
Statistics
Matches: 336, Mismatches: 75, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
50 2 0.01
51 41 0.12
55 3 0.01
56 5 0.01
57 189 0.56
58 42 0.12
59 53 0.16
60 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (57 bp):
TTAAGATGGACTTTATATAATTCACCTCTTTAAAGTGAAGTTCATAGTCACACCTCT
Found at i:38416951 original size:116 final size:114
Alignment explanation
Indices: 38416761--38416968 Score: 272
Period size: 116 Copynumber: 1.8 Consensus size: 114
38416751 TCACACTTTC
* * * *
38416761 TTAAGATGGACTTTATATAATTCACCTATTTAAAGTGAAGCTAATAGTCACACATCTTTAACATG
1 TTAAGATGGACTTTATATAATTCACCTATTTAAAGTAAAGCTAATAATCACACATCCTTAAAATG
* *
38416826 GACTCTATATGATTCACCTCTTTAAGGTGAAGTTCATAGTCATGCCTCT
66 GAATCTATATAATTCACCTCTTTAAGGTGAAGTTCATAGTCATGCCTCT
* * * * * * *
38416875 TTAAGATGGACTTTATGTAGTTCACTTTTTTTTAAAGTAAAGTTCATAATCACACCTCCTTAAAA
1 TTAAGATGGACTTTATATAATTCAC--CTATTTAAAGTAAAGCTAATAATCACACATCCTTAAAA
*
38416940 TGGAATTTATATAATTCACCTCTTTAAGG
64 TGGAATCTATATAATTCACCTCTTTAAGG
38416969 AAACACAAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
114 23 0.29
116 55 0.71
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (114 bp):
TTAAGATGGACTTTATATAATTCACCTATTTAAAGTAAAGCTAATAATCACACATCCTTAAAATG
GAATCTATATAATTCACCTCTTTAAGGTGAAGTTCATAGTCATGCCTCT
Found at i:38428138 original size:58 final size:57
Alignment explanation
Indices: 38427765--38428250 Score: 331
Period size: 57 Copynumber: 8.6 Consensus size: 57
38427755 TCACACTTTC
* * ** ** * * *
38427765 TTAAGATGGACTTTATATAATTCACCTATTTAAAGCGAAGCTAATAGTCACACATCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * * ** * * * *
38427822 TTAACATGGACTCTATATGATTCACCTCTTTAAGGCGAAGTTCATAGTCATGCCTCC
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * * * * * * * * *
38427879 TTAAGATGGACTTTATGTAGTTCACTTTTTTAAAGTAAAGTTGATAATCACACCTCC
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * * * * * *** ** **
38427936 TTAAAATGGAATTTGTATAGTTCACCTCTTTAAGGAGACACAAATAACCATACCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * * * * *
38427993 TTAAGATGGATTTTATATAATTCATCTCTCTGAGGGAAAATTGATAATCACGCCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * *
38428050 TTAATATGGTCTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTTTTT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCC--TCT
* * * * **
38428109 TTAA-ATGGACTTTAAAGAATTCACCTCTTTAAGGAGAAGTTGATAGTCAAACCTCT
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* * **
38428165 TTAAGATGGAC------TAATTCACCTCTTTAAGGCAAAGTTGATAGTCACATCT-T
1 TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
* *
38428215 TCTAATATGGACTTTATATAATCCACCTCTTTAAGG
1 T-TAAGATGGACTTTATATAATTCACCTCTTTAAGG
38428251 TTTTAGGCGG
Statistics
Matches: 337, Mismatches: 82, Indels: 20
0.77 0.19 0.05
Matches are distributed among these distances:
50 2 0.01
51 42 0.12
56 6 0.02
57 239 0.71
58 42 0.12
59 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (57 bp):
TTAAGATGGACTTTATATAATTCACCTCTTTAAGGAAAAATTGATAGTCACGCCTCT
Found at i:38432023 original size:9 final size:9
Alignment explanation
Indices: 38432009--38432063 Score: 56
Period size: 9 Copynumber: 5.6 Consensus size: 9
38431999 TCTTTAATAG
38432009 AAATTGGTA
1 AAATTGGTA
38432018 AAATTGGTA
1 AAATTGGTA
38432027 AAATTGGTCAATA
1 AAATTGG----TA
38432040 GAAATTGGTA
1 -AAATTGGTA
*
38432050 AAATTGGAA
1 AAATTGGTA
38432059 AAATT
1 AAATT
38432064 CCCTCTATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 29 0.73
10 2 0.05
13 2 0.05
14 7 0.17
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (9 bp):
AAATTGGTA
Found at i:38432474 original size:26 final size:27
Alignment explanation
Indices: 38432434--38432495 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
38432424 CCAAATTTAG
* *
38432434 CCTAATAAAATTTTTTACA-ATTTTACC
1 CCTAGTAAAATTTTTGA-AGATTTTACC
38432461 CCTAGTAAAA-TTTTGAAGATTTTACC
1 CCTAGTAAAATTTTTGAAGATTTTACC
*
38432487 CCTGGTAAA
1 CCTAGTAAA
38432496 TTTCGAGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 21 0.68
27 9 0.29
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (27 bp):
CCTAGTAAAATTTTTGAAGATTTTACC
Found at i:38435534 original size:151 final size:152
Alignment explanation
Indices: 38435311--38435606 Score: 540
Period size: 151 Copynumber: 2.0 Consensus size: 152
38435301 CTCATCATTT
*
38435311 TGCACTCGCAATAAAATAAACAACTCTAGGAGACAAAGAAAACAAGTTAAGATTTTCTCACTTGT
1 TGCACTCGCAATAAAATAAACAACTCTAGGAGACAAAGAAAACAAGTTAAGATTTTCTCACTTAT
38435376 AACTTTTAAAGAGTAATCAAACTCAATAATATTC-GAAAAAGATGTAGGATCAATTTCTAACAAA
66 AACTTTTAAAGAGTAATCAAACTCAATAATATTCTGAAAAAGATGTAGGATCAATTTCTAACAAA
38435440 GTTGACCTAAGGCTCGCCGTTA
131 GTTGACCTAAGGCTCGCCGTTA
*
38435462 TGCACTCGCAATAAAATAAACAACTCTAGGAGACAAAGAAAATAAGTTAAGATTTTCTCACTTAT
1 TGCACTCGCAATAAAATAAACAACTCTAGGAGACAAAGAAAACAAGTTAAGATTTTCTCACTTAT
* * *
38435527 AACTTTTAAAGAGTAATCAAACTCAATAATATTCTGAAAATGATGTGGGATCACTTTCTAACAAA
66 AACTTTTAAAGAGTAATCAAACTCAATAATATTCTGAAAAAGATGTAGGATCAATTTCTAACAAA
38435592 GTTGACCTAAGGCTC
131 GTTGACCTAAGGCTC
38435607 TAAGAAGCCA
Statistics
Matches: 139, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
151 97 0.70
152 42 0.30
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (152 bp):
TGCACTCGCAATAAAATAAACAACTCTAGGAGACAAAGAAAACAAGTTAAGATTTTCTCACTTAT
AACTTTTAAAGAGTAATCAAACTCAATAATATTCTGAAAAAGATGTAGGATCAATTTCTAACAAA
GTTGACCTAAGGCTCGCCGTTA
Found at i:38439020 original size:41 final size:42
Alignment explanation
Indices: 38438972--38439126 Score: 158
Period size: 41 Copynumber: 3.7 Consensus size: 42
38438962 ATCGGTCAGG
* * *
38438972 ATTTATTTTGC-AATTTAGATCTTAAGTTTTACTATGTTAGA
1 ATTTATTTTGCTAAATTAGATCTTAAGTTTTAATAGGTTAGA
* * * *
38439013 ATTTATTTT-CTAAATTAGGTCTTAGGTTATAATCGGTTAGA
1 ATTTATTTTGCTAAATTAGATCTTAAGTTTTAATAGGTTAGA
*
38439054 ATTTTATTTTGCTTTAAATTAGAT-TTAAGTTTTAATAGGGTAGA
1 A-TTTATTTTGC--TAAATTAGATCTTAAGTTTTAATAGGTTAGA
* *
38439098 ATTTAATTT-CTAAATTATAT-TTAAGTTTT
1 ATTTATTTTGCTAAATTAGATCTTAAGTTTT
38439127 CTAATAAATT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
40 19 0.20
41 33 0.35
42 9 0.09
43 8 0.08
44 17 0.18
45 9 0.09
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (42 bp):
ATTTATTTTGCTAAATTAGATCTTAAGTTTTAATAGGTTAGA
Found at i:38439200 original size:28 final size:29
Alignment explanation
Indices: 38439169--38439232 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
38439159 TAAGGTCCTT
38439169 ATAAGTTAGAA-TTATATTTAGG-GTTTTA
1 ATAAGTTA-AATTTATATTTAGGAGTTTTA
* * *
38439197 ATAAGATAAATTTATTTTTAGGATTTTTA
1 ATAAGTTAAATTTATATTTAGGAGTTTTA
38439226 ATAAGTT
1 ATAAGTT
38439233 TGGTTTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.07
28 17 0.57
29 11 0.37
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (29 bp):
ATAAGTTAAATTTATATTTAGGAGTTTTA
Found at i:38440763 original size:3 final size:3
Alignment explanation
Indices: 38440755--38440829 Score: 125
Period size: 3 Copynumber: 25.0 Consensus size: 3
38440745 TTTATAGTCA
38440755 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
38440803 TTT CTT CTT CTT C-T CTTT CTT CTT CTT
1 CTT CTT CTT CTT CTT C-TT CTT CTT CTT
38440830 AAATAGGACT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 64 0.94
4 2 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:38443249 original size:18 final size:18
Alignment explanation
Indices: 38443215--38443249 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38443205 AGAAAGTTTC
*
38443215 AAGAGACTCAAGTACAAA
1 AAGAGACTCAAGAACAAA
*
38443233 AAGAGACTCTAGAACAA
1 AAGAGACTCAAGAACAA
38443250 CAGATGTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (18 bp):
AAGAGACTCAAGAACAAA
Found at i:38452142 original size:32 final size:32
Alignment explanation
Indices: 38452095--38452157 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
38452085 ATCAGCCGAG
*
38452095 CAGGAACGTGCTGAAGCACGGCCGTGACAAAA
1 CAGGAACGTGCTGAAGCACAGCCGTGACAAAA
* *
38452127 CAGGAATGTGTTGAAGCACAGCCGTGACAAA
1 CAGGAACGTGCTGAAGCACAGCCGTGACAAA
38452158 GCCTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.30, T:0.13
Consensus pattern (32 bp):
CAGGAACGTGCTGAAGCACAGCCGTGACAAAA
Found at i:38452936 original size:336 final size:336
Alignment explanation
Indices: 38452323--38452993 Score: 1315
Period size: 336 Copynumber: 2.0 Consensus size: 336
38452313 ATTAGGTTCA
38452323 TTATACAGGTCATGTTCCCCAGAGAATAGATCAGTGAAAATAGAAGATCTTGCCTTCCTGCACCA
1 TTATACAGGTCATGTTCCCCAGAGAATAGATCAGTGAAAATAGAAGATCTTGCCTTCCTGCACCA
38452388 CAGCGAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCA
66 CAGCGAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCA
38452453 CTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGT
131 CTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGT
38452518 TGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAAC
196 TGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAAC
**
38452583 AGATCTTATCTCCCTAAGCAGTAGTGGAGTTGATCGAAGACGGCGAATCTTATCTTCCCAAGGAG
261 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGAG
38452648 TAGGGAAGCAT
326 TAGGGAAGCAT
38452659 TTATACAGGTCATGTTCCCCAGAGAATAGATCAGTGAAAATAGAAGATCTTGCCTTCCTGCACCA
1 TTATACAGGTCATGTTCCCCAGAGAATAGATCAGTGAAAATAGAAGATCTTGCCTTCCTGCACCA
38452724 CAGCGAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCA
66 CAGCGAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCA
38452789 CTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGT
131 CTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGT
38452854 TGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAAC
196 TGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAAC
*
38452919 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAG
261 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGAG
38452984 TAGGGAAGCA
326 TAGGGAAGCA
38452994 GATTTAAGCC
Statistics
Matches: 332, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
336 332 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (336 bp):
TTATACAGGTCATGTTCCCCAGAGAATAGATCAGTGAAAATAGAAGATCTTGCCTTCCTGCACCA
CAGCGAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCA
CTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGT
TGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAAC
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGAG
TAGGGAAGCAT
Found at i:38452984 original size:216 final size:216
Alignment explanation
Indices: 38452728--38453322 Score: 928
Period size: 216 Copynumber: 2.8 Consensus size: 216
38452718 GCACCACAGC
* *
38452728 GAAGCAGATCGAAAACGGTGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAA
1 GAAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAA
38452793 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGTTGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGTTGCA
38452858 GCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAACAGAT
131 GCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAACAGAT
38452923 CTTATCTCCCTAAGCAGTAGT
196 CTTATCTCCCTAAGCAGTAGT
*
38452944 GGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAA
1 GAAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAA
38453009 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGTTGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGTTGCA
38453074 GCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAACAGAT
131 GCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAACAGAT
38453139 CTTATCTCCCTAAGCAGTAGT
196 CTTATCTCCCTAAGCAGTAGT
* * * * * * * *
38453160 GAAGCAAATCGAAGATGGC-AGATTTTA-CCTCCCTGAGGA-TACAGTGG-AGTACATTGAAGCC
1 GAAGCAGATCGAAGACGGCGA-ATCTTATCTTCCC-CAGGAGT--AG-GGAAGCAGATTTAAGCC
* * * ** * *
38453221 AGTAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAAATCTTATCTATCTGAAG
61 ACTAATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAG
** *
38453286 TTGCAATAGAGTAGATCGCATCAGGTCTTATCTCCCT
126 TTGCAGCAGAGTAGATCGCATTAGGTCTTATCTCCCT
38453323 AAAGTTGCAG
Statistics
Matches: 352, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
215 7 0.02
216 238 0.68
217 105 0.30
218 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (216 bp):
GAAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAA
TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGGTCTTATCTCTTTGAAGTTGCA
GCAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGCGGAGCATACTGAAGAAACAGAT
CTTATCTCCCTAAGCAGTAGT
Found at i:38453277 original size:44 final size:44
Alignment explanation
Indices: 38453224--38453382 Score: 128
Period size: 44 Copynumber: 3.7 Consensus size: 44
38453214 TGAAGCCAGT
* *
38453224 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTGGATTAAAATAAAA
** * * *** *
38453268 AATCTTATCTATCTGAAGTTGCAATAGAGTAGA-TCGCAT--CA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTGGATTAAAATAAAA
** * * * *
38453309 GGTCTTATCTCCCTAAAGTTGCAGTGGAGTGGATTGAAATAATA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTGGATTAAAATAAAA
*
38453353 GATCTTATC-CCTCTGAAGTTGCAGTAGAGT
1 AATCTTATCTCC-CTGAAGTTGCAGTAGAGT
38453383 ATATCACATC
Statistics
Matches: 86, Mismatches: 25, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
41 26 0.30
42 3 0.03
43 5 0.06
44 52 0.60
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGTGGATTAAAATAAAA
Found at i:38453328 original size:41 final size:41
Alignment explanation
Indices: 38453270--38453460 Score: 132
Period size: 41 Copynumber: 4.5 Consensus size: 41
38453260 AAATAAAAAA
**
38453270 TCTTATCTATCTGAAGTTGCAATAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAATAGAGTAGATCGCATCAGG
* * * * * * * *
38453311 TCTTATCTCCCTAAAGTTGCAGTGGAGTGGATTGAAATAATAGA
1 TCTTATCTCCCTGAAGTTGCAATAGAGTAGATCG-CAT--CAGG
* * *
38453355 TCTTATC-CCTCTGAAGTTGCAGTAGAGTATATCACATCAGG
1 TCTTATCTCC-CTGAAGTTGCAATAGAGTAGATCGCATCAGG
* * * * * *
38453396 TCTTATCTCCCTGAGGTTGCAACAGAGCAGATTGAGAAAGCAGG
1 TCTTATCTCCCTGAAGTTGCAATAGAGTAGA-T-CG-CATCAGG
*
38453440 TCTTATCCCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCA
38453461 GTGGGGCAGA
Statistics
Matches: 112, Mismatches: 30, Indels: 13
0.72 0.19 0.08
Matches are distributed among these distances:
41 52 0.46
42 5 0.04
43 4 0.04
44 51 0.46
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
TCTTATCTCCCTGAAGTTGCAATAGAGTAGATCGCATCAGG
Found at i:38453372 original size:85 final size:85
Alignment explanation
Indices: 38453229--38453416 Score: 286
Period size: 85 Copynumber: 2.2 Consensus size: 85
38453219 CCAGTAATCC
*
38453229 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAAATCTTATCTATCTGAAGTTGCAATA
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAAATCTTATCCATCTGAAGTTGCAATA
*
38453294 GAGTAGATCGCATCAGGTCT
66 GAGTAGATCACATCAGGTCT
* * * * * *
38453314 TATCTCCCTAAAGTTGCAGTGGAGTGGATTGAAATAATAGATCTTATCCCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAAATCTTATCCATCTGAAGTTGCAATA
*
38453379 GAGTATATCACATCAGGTCT
66 GAGTAGATCACATCAGGTCT
*
38453399 TATCTCCCTGAGGTTGCA
1 TATCTCCCTGAAGTTGCA
38453417 ACAGAGCAGA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAAATCTTATCCATCTGAAGTTGCAATA
GAGTAGATCACATCAGGTCT
Found at i:38453429 original size:85 final size:85
Alignment explanation
Indices: 38453255--38453462 Score: 229
Period size: 85 Copynumber: 2.4 Consensus size: 85
38453245 CAGTGGAGTG
* * ** * *
38453255 GATTAAAATAAAAAATCTTATCTATCTGAAGTTGCAATAGAGTAGATCGCATCAGGTCTTATCTC
1 GATTGAAATAAAAGATCTTATCCCTCTGAAGTTGCAGTAGAGTAGATCACATCAGGTCTTATCTC
*** **
38453320 CCTAAAGTTGCAGTGGAGTG
66 CCTAAAGTTGCAACAGAGCA
* *
38453340 GATTGAAATAATAGATCTTATCCCTCTGAAGTTGCAGTAGAGTATATCACATCAGGTCTTATCTC
1 GATTGAAATAAAAGATCTTATCCCTCTGAAGTTGCAGTAGAGTAGATCACATCAGGTCTTATCTC
* *
38453405 CCTGAGGTTGCAACAGAGCA
66 CCTAAAGTTGCAACAGAGCA
** * *
38453425 GATTGAGAA-AGCAGGTCTTATCCCCCTGAAGTTGCAGT
1 GATTGA-AATAAAAGATCTTATCCCTCTGAAGTTGCAGT
38453463 GGGGCAGACT
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
85 101 0.98
86 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (85 bp):
GATTGAAATAAAAGATCTTATCCCTCTGAAGTTGCAGTAGAGTAGATCACATCAGGTCTTATCTC
CCTAAAGTTGCAACAGAGCA
Found at i:38453567 original size:50 final size:50
Alignment explanation
Indices: 38453513--38453888 Score: 401
Period size: 50 Copynumber: 7.5 Consensus size: 50
38453503 ACAGTGGAAT
** *
38453513 AGATTAAAGCCACAGTGGCCAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
38453563 AGATTAAAGCTACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
38453613 AGATTAAAGCCACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
38453663 AGATTAAAGCTACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
38453713 AGATTAAAGCCACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
38453763 AGATTAAAGCTACAACGACGAATCTTACTTCCCAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
38453813 AGATTAAAGCCACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
38453863 AGATTGAAGCTACAATGGCGAATCTT
1 AGATTAAAGCCACAACGGCGAATCTT
38453889 ACTTTCCAAA
Statistics
Matches: 254, Mismatches: 72, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 254 1.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:38453654 original size:100 final size:100
Alignment explanation
Indices: 38453481--38453892 Score: 725
Period size: 100 Copynumber: 4.1 Consensus size: 100
38453471 CTGAGAATAG
* * * * * ** *
38453481 CGAATCTTACTTTCCTGGCAGTACAGTGGAATAGATTAAAGCCACAGTGGCCAATCTTGCTTCCC
1 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
38453546 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
66 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
38453581 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
1 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
38453646 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
66 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
38453681 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
1 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
38453746 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
66 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
38453781 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
1 CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
* * *
38453846 CGACATTGCAGTTAAAAAGATTGAAGCTACAATGG
66 CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
38453881 CGAATCTTACTT
1 CGAATCTTACTT
38453893 TCCAAAAGTT
Statistics
Matches: 301, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 301 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (100 bp):
CGAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCC
CGACATTGCAGTTAAAAAGATTAAAGCTACAACGA
Found at i:38455753 original size:21 final size:19
Alignment explanation
Indices: 38455727--38455777 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
38455717 AAAAATACAT
38455727 TATTTTTTAAATTATTATAAA
1 TATTTTTTAAA-T-TTATAAA
*
38455748 TA-TTTTTAAATTTATCAA
1 TATTTTTTAAATTTATAAA
38455766 TATTGTTTTAAA
1 TATT-TTTTAAA
38455778 AATATATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 8 0.30
19 2 0.07
20 15 0.56
21 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTTTTTAAATTTATAAA
Found at i:38455853 original size:63 final size:63
Alignment explanation
Indices: 38455780--38455905 Score: 189
Period size: 63 Copynumber: 2.0 Consensus size: 63
38455770 GTTTTAAAAA
* *
38455780 TATATAATTTATATGAAGTTATTTTTAGCATACATACATATATAGAGTATATCATTAATTTCG
1 TATATAATTTATATGAAATTATTTTTAGCATACATACATATATAGAGTATATCATTAACTTCG
* * ** *
38455843 TATATAATTTATATGAAATTATTTTTAGTATATATATGTATATAGAGTGTATCATTAACTTCG
1 TATATAATTTATATGAAATTATTTTTAGCATACATACATATATAGAGTATATCATTAACTTCG
38455906 GATTAACCTT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.46
Consensus pattern (63 bp):
TATATAATTTATATGAAATTATTTTTAGCATACATACATATATAGAGTATATCATTAACTTCG
Found at i:38458622 original size:9 final size:9
Alignment explanation
Indices: 38458608--38458641 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
38458598 CCCAAATTAT
38458608 TTTTTTTTC
1 TTTTTTTTC
38458617 TTTTTTTTC
1 TTTTTTTTC
*
38458626 -TTTTTTCC
1 TTTTTTTTC
38458634 TTTTTTTT
1 TTTTTTTT
38458642 ATGCTTTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:38458631 original size:17 final size:17
Alignment explanation
Indices: 38458609--38458641 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38458599 CCAAATTATT
*
38458609 TTTTTTTCTTTTTTTTC
1 TTTTTTCCTTTTTTTTC
38458626 TTTTTTCCTTTTTTTT
1 TTTTTTCCTTTTTTTT
38458642 ATGCTTTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTCCTTTTTTTTC
Found at i:38459664 original size:9 final size:10
Alignment explanation
Indices: 38459650--38459692 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
38459640 ATTAATATTC
38459650 AAAT-AAGTA
1 AAATAAAGTA
*
38459659 AAATAAAATA
1 AAATAAAGTA
38459669 AAATAAAGTAA
1 AAATAAAGT-A
38459680 TAAATAAAGTA
1 -AAATAAAGTA
38459691 AA
1 AA
38459693 GAAAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 14 0.48
11 2 0.07
12 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAAGTA
Found at i:38459686 original size:17 final size:16
Alignment explanation
Indices: 38459663--38459721 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
38459653 TAAGTAAAAT
38459663 AAAATAAAATAAAGTA
1 AAAATAAAATAAAGTA
*
38459679 ATAAATAAAGTAAAG-A
1 A-AAATAAAATAAAGTA
* *
38459695 AAAAAATAAATAATAATA
1 AAAATA-AAATAA-AGTA
38459713 AAAATAAAA
1 AAAATAAAA
38459722 ATTGGGTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
17 16 0.47
18 6 0.18
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAAGTA
Found at i:38459721 original size:21 final size:21
Alignment explanation
Indices: 38459659--38459723 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
38459649 CAAATAAGTA
*
38459659 AAATAAAATAAA-ATAAAGTAAT
1 AAATAAAATAAAGA-AAA-AAAT
*
38459681 AAATAAAGTAAAGAAAAAAAT
1 AAATAAAATAAAGAAAAAAAT
38459702 AAATAATAATAAA-AATAAAAAT
1 AAATAA-AATAAAGAA-AAAAAT
38459724 TGGGTTGCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 11 0.30
22 25 0.68
23 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AAATAAAATAAAGAAAAAAAT
Found at i:38463677 original size:15 final size:14
Alignment explanation
Indices: 38463656--38463691 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
38463646 ATAATCCTTA
38463656 ATAATTATCTCAAT
1 ATAATTATCTCAAT
*
38463670 ATTAATTATCTTAAT
1 A-TAATTATCTCAAT
38463685 ATAATTA
1 ATAATTA
38463692 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCTCAAT
Found at i:38474401 original size:147 final size:145
Alignment explanation
Indices: 38474077--38474427 Score: 389
Period size: 146 Copynumber: 2.4 Consensus size: 145
38474067 TACCATCTTG
* * * * * ** * *
38474077 TTAGAAATTTTAGTATATACCAAAATATCTAAGGATGTGCTATTAGAAATAGTGATATTTTATTA
1 TTAGAAATTATGGTATATACCAAAATATCTAAGGATATCCTCTTAGAAATTTTGGTATTTCATTA
* * * *
38474142 GAAATCTTGGTATAGGCTCATAAATTTAGATTTTGGTATATCAAAATTCTAACGAGGTTCCATAG
66 GAAATCTTGGTATAAGCTCATAAA-TCAGATTTTGGTATACCAAAATTCTAACGAGGTTCCATAA
* *
38474207 AAATATTAATATTTCT
130 AAATATTAATATTCCC
* * * * * *
38474223 TTAGAAATTAAGGTATATACCAGAATTTCTAAAGATAACCTCTTAGAAATTTTGGTATTTCGTTA
1 TTAGAAATTATGGTATATACCAAAATATCTAAGGATATCCTCTTAGAAATTTTGGTATTTCATTA
* * * *
38474288 GAAATCTTGTTATAAGTTTATACAA-CACGATTTTGGTATACCAAAATTTCTTACGAGGTTCCAT
66 GAAATCTTGGTATAAGCTCATA-AATCA-GATTTTGGTATACCAAAA-TTCTAACGAGGTTCCAT
**
38474352 AAAAATATTGGTATTCCC
128 AAAAATATTAATATTCCC
* * *
38474370 TTAGAAATTATGGTATATACCAAAATATCTAAGGATATTCACTTATAAATTTTGGTAT
1 TTAGAAATTATGGTATATACCAAAATATCTAAGGATATCCTCTTAGAAATTTTGGTAT
38474428 ACCACAATTT
Statistics
Matches: 167, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
145 1 0.01
146 85 0.51
147 81 0.49
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (145 bp):
TTAGAAATTATGGTATATACCAAAATATCTAAGGATATCCTCTTAGAAATTTTGGTATTTCATTA
GAAATCTTGGTATAAGCTCATAAATCAGATTTTGGTATACCAAAATTCTAACGAGGTTCCATAAA
AATATTAATATTCCC
Found at i:38483602 original size:107 final size:107
Alignment explanation
Indices: 38483419--38483844 Score: 761
Period size: 107 Copynumber: 4.0 Consensus size: 107
38483409 AAAAATTATT
38483419 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTT-AAAAAAATTC-TTTTTTTCG
1 TTTTGGGTGCTGG-CTGTCAATGGCCGGCACCCAGTAC-AATTTAAAAAAAATTCTTTTTTTTCG
38483482 TGTCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
64 TGTCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
38483526 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
1 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
38483591 TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
66 TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
38483633 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
1 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
38483698 TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
66 TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
38483740 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAATTTACTTTTTTTT-
1 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAA-TTTAAAAAAAA-TT-CTTTTTTTTC
* *
38483804 GTGTCAGAGTTAAATATAAATATACGAAAAAAATAAA-AAAA
63 GTGTCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAA
38483845 GAAAGAAAAA
Statistics
Matches: 312, Mismatches: 2, Indels: 9
0.97 0.01 0.03
Matches are distributed among these distances:
105 5 0.02
106 34 0.11
107 212 0.68
108 15 0.05
109 37 0.12
110 9 0.03
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (107 bp):
TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAA
Found at i:38483853 original size:10 final size:10
Alignment explanation
Indices: 38483829--38483867 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
38483819 ATAAATATAC
38483829 GAAAAAAATAA
1 GAAAAAAA-AA
*
38483840 -AAAAAGAAA
1 GAAAAAAAAA
38483849 GAAAAAAAAA
1 GAAAAAAAAA
38483859 GAAAAAAAA
1 GAAAAAAAA
38483868 TTATTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.08
10 23 0.92
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:38483857 original size:14 final size:13
Alignment explanation
Indices: 38483832--38483867 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
38483822 AATATACGAA
38483832 AAAAATAAAAAAAG
1 AAAAA-AAAAAAAG
38483846 AAAGAAAAAAAAAG
1 AAA-AAAAAAAAAG
38483860 AAAAAAAA
1 AAAAAAAA
38483868 TTATTTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 14 0.67
15 2 0.10
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:38484032 original size:239 final size:238
Alignment explanation
Indices: 38483633--38484083 Score: 676
Period size: 239 Copynumber: 1.9 Consensus size: 238
38483623 AATAAAAAAA
* ** *
38483633 TTTTGGGTGCTGGCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCTTTTTTTTCGTG
1 TTTTGGGTGCTGGCTGTCAATGGCCGACACCCAG-ACAATAAAAAAAAAATTCTCTTTTTTC-TG
* * *
38483698 TCAGAGTCAGATATAAATATACGAAAAAAATAAATAAAAAAATTTTGGGTGCTGGCTGTCAATGG
64 TCAGAATAAGATATAAATATACGAAAAAAATAAAAAAAAAAATTTTGGGTGCTGGCTGTCAATGG
* * * *
38483763 CCGGCACCCAGTACAATTTTAAAAAAAATTTACTTTTTTTT-GTGTCAGAGTTAAATATAAATAT
129 CCGGCACCCAGTACAAATTAAAAAAAAATTT-CTTTTTTTTCGTGTCAGAATCAAATATAAATAT
38483827 ACGAAAAAAATAAAAAAAGAAAGAAAAAAAAAGAAAAAAAATTATT
193 ACGAAAAAAATAAAAAAAGAAAGAAAAAAAAAGAAAAAAAATTATT
*
38483873 TTTTGGGTGCTGGCCTGTCAATGGCCGACACCCA-ACAGTAAAAAAAAAATT-TCCTTTTTT-TG
1 TTTTGGGTGCTGG-CTGTCAATGGCCGACACCCAGACAATAAAAAAAAAATTCT-CTTTTTTCTG
38483935 TCAGAATAAGATATAAATATACGAAAAAAATAAAAATAAAAAATTTTGGGTGCTGGCCTGTCAAT
64 TCAGAATAAGATATAAATATACGAAAAAAATAAAAA-AAAAAATTTTGGGTGCTGG-CTGTCAAT
* *
38484000 GGCTGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTCGTGTCAGAATCAGATATAAATA
127 GGCCGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTCGTGTCAGAATCAAATATAAATA
*
38484065 TACGAAAAAATTAAAAAAA
192 TACGAAAAAAATAAAAAAA
38484084 AATTTTGGGT
Statistics
Matches: 191, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
237 35 0.18
238 29 0.15
239 95 0.50
240 13 0.07
241 19 0.10
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.29
Consensus pattern (238 bp):
TTTTGGGTGCTGGCTGTCAATGGCCGACACCCAGACAATAAAAAAAAAATTCTCTTTTTTCTGTC
AGAATAAGATATAAATATACGAAAAAAATAAAAAAAAAAATTTTGGGTGCTGGCTGTCAATGGCC
GGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTCGTGTCAGAATCAAATATAAATATACG
AAAAAAATAAAAAAAGAAAGAAAAAAAAAGAAAAAAAATTATT
Found at i:38484102 original size:108 final size:110
Alignment explanation
Indices: 38483873--38484186 Score: 428
Period size: 108 Copynumber: 2.9 Consensus size: 110
38483863 AAAAATTATT
* * * *
38483873 TTTTGGGTGCTGGCCTGTCAATGGCCGACACCCA--AC-AGTAAAAAAAAAATTTC-CTTTTTT-
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTC
*
38483933 -TGTCAGAATAAGATATAAATATACGAAAAAAATAAAAATAAAAAA
66 GTGTCAGAATCAGATATAAATATACG-AAAAAATAAAAATAAAAAA
*
38483978 TTTTGGGTGCTGGCCTGTCAATGGCTGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTC
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTC
*
38484043 GTGTCAGAATCAGATATAAATATACGAAAAAAT-TAAA-AAAAAA
66 GTGTCAGAATCAGATATAAATATACGAAAAAATAAAAATAAAAAA
*
38484086 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAAACTTTTTTTCTTTT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAAA-----TTTCTTTT
* *
38484151 TTTTCGTGTTAGAGTCAGATATAAATATACGAAAAA
61 TTTTCGTGTCAGAATCAGATATAAATATACGAAAAA
38484187 TATGCGCTAT
Statistics
Matches: 187, Mismatches: 11, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
105 32 0.17
107 2 0.01
108 71 0.38
109 9 0.05
110 7 0.04
111 24 0.13
113 42 0.22
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (110 bp):
TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAAATTTCTTTTTTTTC
GTGTCAGAATCAGATATAAATATACGAAAAAATAAAAATAAAAAA
Found at i:38487031 original size:107 final size:105
Alignment explanation
Indices: 38486434--38487390 Score: 1181
Period size: 107 Copynumber: 9.1 Consensus size: 105
38486424 GATGTTTGGT
* *
38486434 CAGCACCCAAA-ATTTTTTTTATTTTTTTCGTATATTTATATCTGACTCCGACAC-AAAAAAAAG
1 CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAAG
* *
38486497 AATTTTTTTAAAAATTTGTACTGCGTGCCGGCCATTGACAGGG
66 AATTTTTTT--AAA-TTGTACTGGGTGCCGGCCATTGACAGGC
* *
38486540 CAGCACCCAAAAATTTTTTTTTTAAAATTTTTTCGTATATTTATATCTGATTCTGACACGAAAAA
1 CAGCACCC--AAATTTTTTTTTT--ATTTTTTTCGTATATTTATATCTGACTCTGACAC-AAAAA
* * *
38486605 AAGAA-ATTTTTTTTAATTTGTACTGGATGCCGGCCATTGACAGGC
61 AA-AAGAATTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
* * *
38486650 TAGCACCCAAAAATTTTTATTTTATTTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAA
1 CAGCACCC--AAATTTTTTTTTTA-TTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAA
**
38486715 ATTAATTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
63 AAGAA--TTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
* *
38486760 CAGCACCCAAA-ATTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACAC-GAAAAAAAG
1 CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAAG
38486823 AATTTTTTTAAATTTGTACTGGGTGCCGGCCATTGACAGGC
66 AATTTTTTTAAA-TTGTACTGGGTGCCGGCCATTGACAGGC
** * * * * *
38486864 CAGCACTTAAATTTTTTTTTAATTTTTTTTGTATATTTAAATTTGATTCTGACACGAAAAAAAAA
1 CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACAC-AAAAAAAAA
* *
38486929 GAATTTTTTTAATTTGTACTGAGTGCCGGCCATTGACAGGC
65 GAATTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
* * *
38486970 CATCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATTTAACTCTGACAC-AAAAAAAAG
1 CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAAG
38487034 TAAATTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACA-GC
66 --AA-TTTTTTT-AAATTGTACTGGGTGCCGGCCATTGACAGGC
*
38487077 CAGCACCCAAAATTTTTTTATTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAA
1 CAGCACCC-AAATTTTTTT-TTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAA
38487142 AGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACA-GC
64 AGAA-TTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
*
38487184 CAGCACCCAAAATTTTTTTATTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAA
1 CAGCACCC-AAATTTTTTT-TTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAA
38487249 AGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
64 AGAA-TTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
* * * *
38487292 TAGCACCC-AA--------TT-TTTTTTTCGTATATTTATATCTTATTTTG--AC--AAAAAAAG
1 CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAAG
* *
38487343 AATTTTTTT-TACTGT--TGGGTGCCGGCCATTGACAGGC
66 AATTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
38487380 CAGCACCCAAA
1 CAGCACCCAAA
38487391 AAATAATTTT
Statistics
Matches: 771, Mismatches: 55, Indels: 67
0.86 0.06 0.08
Matches are distributed among these distances:
88 29 0.04
89 2 0.00
90 4 0.01
91 7 0.01
92 10 0.01
94 2 0.00
96 26 0.03
97 2 0.00
103 10 0.01
104 46 0.06
105 45 0.06
106 119 0.15
107 179 0.23
108 69 0.09
109 74 0.10
110 98 0.13
111 33 0.04
113 14 0.02
114 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (105 bp):
CAGCACCCAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAAG
AATTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGC
Found at i:38487142 original size:214 final size:213
Alignment explanation
Indices: 38486434--38487391 Score: 1274
Period size: 215 Copynumber: 4.6 Consensus size: 213
38486424 GATGTTTGGT
*
38486434 CAGCACCCAAAA--TTTTTTTTATTTTTTTCGTATATTTATATCTGACTCCGACAC-AAAAAAAA
1 CAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAA
* * *
38486496 GAATTTTTTTAAAAATTTGTACTGCGTGCCGGCCATTGACAGGGCAGCACCCAAAAATTTTTTTT
66 GAATTTTTTT-TAAA-TTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAATTTTTTTT
* * * *
38486561 TTAAAATTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAGAAATTTTTTTTAATTTGT
128 TT--ATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAG-AATTTTTTTTAAATTGT
*
38486626 ACTGGATGCCGGCCATTGACAGGC
190 ACTGGGTGCCGGCCATTGACAGGC
* *
38486650 TAGCACCCAAAAATTTTTATTTTATTTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAA
1 CAGCACCC-AAAATTTTTTTTTTA-TTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAA
**
38486715 ATTAATTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA--TTTTTT
64 AAGAA-TTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTT
*
38486778 TTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAA-TTTTTTTAAATTTGTAC
128 TTATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAGAATTTTTTTTAAA-TTGTAC
38486842 TGGGTGCCGGCCATTGACAGGC
192 TGGGTGCCGGCCATTGACAGGC
** * * * * *
38486864 CAGCA-CTTAAATTTTTTTTTAATTTTTTTTGTATATTTAAATTTGATTCTGACACGAAAAAAAA
1 CAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACG-AAAAAAA
* * *
38486928 AGAA-TTTTTTTAATTTGTACTGAGTGCCGGCCATTGACAGGCCATCACCC-AAATTTTTTTTTT
65 AGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTT
* *
38486991 ATTTTTTTCGTATATTTATATTTAACTCTGACACAAAAAAAAGTAAATTTTTTTTAAAATTGTAC
130 ATTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAG--AATTTTTTTT-AAATTGTAC
38487056 TGGGTGCCGGCCATTGACA-GC
192 TGGGTGCCGGCCATTGACAGGC
38487077 CAGCACCCAAAATTTTTTTATTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAA
1 CAGCACCCAAAATTTTTTT-TTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAA
38487142 AGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACA-GCCAGCACCCAAAATTTTTTTATT
65 AGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTT-TT
38487206 TATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAATTTTTTTTAAATTGTACT
129 TATTTTTTTCGTATATTTATATCTGACTCTGACAC-AAAAAAAAGAATTTTTTTTAAATTGTACT
38487271 GGGTGCCGGCCATTGACAGGC
193 GGGTGCCGGCCATTGACAGGC
* * * *
38487292 TAGCACCC--AA--------TT-TTTTTTTCGTATATTTATATCTTATTTTG--AC--AAAAAAA
1 CAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAA
*
38487342 GAATTTTTTTT--ACTGT--TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
66 GAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
38487392 AATAATTTTT
Statistics
Matches: 674, Mismatches: 46, Indels: 64
0.86 0.06 0.08
Matches are distributed among these distances:
195 19 0.03
196 14 0.02
197 4 0.01
199 18 0.03
201 2 0.00
203 26 0.04
204 2 0.00
209 3 0.00
210 43 0.06
211 78 0.12
212 21 0.03
213 21 0.03
214 124 0.18
215 139 0.21
216 42 0.06
217 21 0.03
219 12 0.02
220 66 0.10
221 12 0.02
222 7 0.01
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (213 bp):
CAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAA
GAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTA
TTTTTTTCGTATATTTATATCTGACTCTGACACAAAAAAAAGAATTTTTTTTAAATTGTACTGGG
TGCCGGCCATTGACAGGC
Found at i:38487385 original size:88 final size:92
Alignment explanation
Indices: 38487208--38487389 Score: 255
Period size: 88 Copynumber: 2.0 Consensus size: 92
38487198 TTTTTATTTA
*
38487208 TTTTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAATTTTTTTTAAATTGTACTGG
1 TTTTTTTCGTATATTTATATCTGACTCTGA-AC-AAAAAAAAGAATTTTTTTT-AACTGTA-TGG
*
38487273 GTGCCGGCCATTGACAGGCTAGCACCCAATT
62 GTGCCGGCCATTGACAGGCCAGCACCCAATT
* * *
38487304 TTTTTTTCGTATATTTATATCTTATTTTG-AC-AAAAAAAGAATTTTTTTT-ACTGT-TGGGTGC
1 TTTTTTTCGTATATTTATATCTGACTCTGAACAAAAAAAAGAATTTTTTTTAACTGTATGGGTGC
38487365 CGGCCATTGACAGGCCAGCACCCAA
66 CGGCCATTGACAGGCCAGCACCCAA
38487390 AAAATAATTT
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
88 31 0.38
90 4 0.05
92 18 0.22
94 2 0.02
96 26 0.32
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (92 bp):
TTTTTTTCGTATATTTATATCTGACTCTGAACAAAAAAAAGAATTTTTTTTAACTGTATGGGTGC
CGGCCATTGACAGGCCAGCACCCAATT
Found at i:38496706 original size:146 final size:147
Alignment explanation
Indices: 38496383--38496733 Score: 384
Period size: 146 Copynumber: 2.4 Consensus size: 147
38496373 AAATTGTGGT
* * * * * *
38496383 ATACCAAAATTTATAAGTGAATATCCTTAGATATTTTGGTATATACCATAATTTCTAAGGGAATA
1 ATACCAAAATTTCTAAGAGCACATCCTTAGATATTTTGGTATATACCATAATTTCTAAAGAAATA
* * * *
38496448 CCAATATTTTTATGGAACCTCGTAAGAAATTTTGGTATACCAAAATCGTGTTGTATAAACTTATA
66 CCAATATTTCTATGGAACCTCGTAAGAAATTTTGATATACCAAAATCGTATTGTATAAACCTATA
*
38496513 ACAAGATTTCTAACGAA
131 ACAAGATTTCTAACAAA
*** * * * *
38496530 ATACCAAAATTTCTAAGAGGTTATCTTTAGAAATTCTGGTATATACCTTAATTTCTAAAGAAATA
1 ATACCAAAATTTCTAAGAGCACATCCTTAGATATTTTGGTATATACCATAATTTCTAAAGAAATA
** * * *
38496595 TTAATATTTCTATGGAACCTCGTTAG-AATTTTGATATACCAAAATC-TAAATT-TATGAGCCTA
66 CCAATATTTCTATGGAACCTCGTAAGAAATTTTGATATACCAAAATCGT--ATTGTATAAACCTA
* *
38496657 TACCAAGATTTCTAATAAA
129 TAACAAGATTTCTAACAAA
* ** * * *
38496676 ATATCACTATTTCTAATAGCACATCCTTAGATATTTTGGTATATACTAAAATTTCTAA
1 ATACCAAAATTTCTAAGAGCACATCCTTAGATATTTTGGTATATACCATAATTTCTAA
38496734 CAAGATGGTA
Statistics
Matches: 167, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
145 1 0.01
146 87 0.52
147 79 0.47
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (147 bp):
ATACCAAAATTTCTAAGAGCACATCCTTAGATATTTTGGTATATACCATAATTTCTAAAGAAATA
CCAATATTTCTATGGAACCTCGTAAGAAATTTTGATATACCAAAATCGTATTGTATAAACCTATA
ACAAGATTTCTAACAAA
Found at i:38507148 original size:15 final size:15
Alignment explanation
Indices: 38507119--38507153 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
38507109 AACTCTATTT
38507119 TAATT-ATATTAAGA
1 TAATTAATATTAAGA
*
38507133 TAATTAATATTGAGA
1 TAATTAATATTAAGA
38507148 TAATTA
1 TAATTA
38507154 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:38511113 original size:21 final size:21
Alignment explanation
Indices: 38511089--38511132 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
38511079 GCAACCCAAT
*
38511089 TTTTATT-TTTATTATTATTTA
1 TTTTATTCTTTACT-TTATTTA
*
38511110 TTTTTTTCTTTACTTTATTTA
1 TTTTATTCTTTACTTTATTTA
38511131 TT
1 TT
38511133 ACTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTATTCTTTACTTTATTTA
Found at i:38511126 original size:17 final size:17
Alignment explanation
Indices: 38511106--38511147 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
38511096 TTTATTATTA
*
38511106 TTTATTTTTTTCTTTAC
1 TTTATTTTTTACTTTAC
* *
38511123 TTTATTTATTACTTTAT
1 TTTATTTTTTACTTTAC
38511140 TTTATTTT
1 TTTATTTT
38511148 ATTTTACTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTTTTACTTTAC
Found at i:38511142 original size:27 final size:26
Alignment explanation
Indices: 38511096--38511159 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
38511086 AATTTTTATT
*
38511096 TTTATTATTATTTATTTTTTTCTTTAC
1 TTTATTATTATTTATTTTTAT-TTTAC
*
38511123 TTTATTTATTACTTTA-TTTTATTTTAT
1 TTTA-TTATTA-TTTATTTTTATTTTAC
38511150 TTTACTTATT
1 TTTA-TTATT
38511160 TGAATATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 17 0.53
28 11 0.34
29 4 0.12
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTATTATTATTTATTTTTATTTTAC
Found at i:38512201 original size:17 final size:17
Alignment explanation
Indices: 38512169--38512201 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38512159 CCTAAAGCAT
*
38512169 AAAAAAAAGGAAAAAAG
1 AAAAAAAAGAAAAAAAG
38512186 AAAAAAAAGAAAAAAA
1 AAAAAAAAGAAAAAAA
38512202 AATAATTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:38512203 original size:10 final size:9
Alignment explanation
Indices: 38512169--38512202 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
38512159 CCTAAAGCAT
38512169 AAAAAAAAG
1 AAAAAAAAG
*
38512178 -GAAAAAAG
1 AAAAAAAAG
38512186 AAAAAAAAG
1 AAAAAAAAG
38512195 AAAAAAAA
1 AAAAAAAA
38512203 ATAATTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:38516929 original size:50 final size:50
Alignment explanation
Indices: 38516854--38517029 Score: 199
Period size: 50 Copynumber: 3.5 Consensus size: 50
38516844 TTTGGAAAGT
*
38516854 AAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * ** ** * * *
38516904 AAGATTTGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
1 AAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* *
38516954 AAGATTCGTCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * *
38517004 AAGATTGGCCACTGTGGCTTTAATCT
1 AAGATTCGCCATTGTAGCTTTAATCT
38517030 ATTCCACTGT
Statistics
Matches: 98, Mismatches: 28, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 98 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (50 bp):
AAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
Found at i:38517023 original size:100 final size:100
Alignment explanation
Indices: 38516847--38517062 Score: 333
Period size: 100 Copynumber: 2.2 Consensus size: 100
38516837 CGTAACTTTT
*
38516847 GGAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTG
1 GGAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTGG
** * *
38516912 CCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
66 CCACTGTGGCTTTAATCTATTCCACTGCACCGCCA
* * * *
38516947 GGGAAGTAAGATTCGTCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTGG
1 GGAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTGG
* *
38517012 CCACTGTGGCTTTAATCTATTCCACTGTACTGCCA
66 CCACTGTGGCTTTAATCTATTCCACTGCACCGCCA
38517047 GGAAAGTAAGATTCGC
1 GGAAAGTAAGATTCGC
38517063 TATTCTCAGT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 103 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (100 bp):
GGAAAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTGG
CCACTGTGGCTTTAATCTATTCCACTGCACCGCCA
Found at i:38517058 original size:50 final size:50
Alignment explanation
Indices: 38516850--38517062 Score: 156
Period size: 50 Copynumber: 4.3 Consensus size: 50
38516840 AACTTTTGGA
* * * * ** * * *
38516850 AAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCACTGTGGCTTTAATCTATTCCACTGCACTGCCAGGG
* * ** * * *
38516900 AAGCAAGATTTGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
1 AAGTAAGATTCGCCACTGTGGCTTTAATCTATTCCACTGCACTGCCAGGG
* ** * * ** * * *
38516950 AAGTAAGATTCGTCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCACTGTGGCTTTAATCTATTCCACTGCACTGCCAGGG
* * * *
38517000 AAGCAAGATTGGCCACTGTGGCTTTAATCTATTCCACTGTACTGCCAGGA
1 AAGTAAGATTCGCCACTGTGGCTTTAATCTATTCCACTGCACTGCCAGGG
38517050 AAGTAAGATTCGC
1 AAGTAAGATTCGC
38517063 TATTCTCAGT
Statistics
Matches: 124, Mismatches: 39, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 124 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
AAGTAAGATTCGCCACTGTGGCTTTAATCTATTCCACTGCACTGCCAGGG
Found at i:38517120 original size:44 final size:44
Alignment explanation
Indices: 38517065--38517150 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
38517055 AGATTCGCTA
* * *
38517065 TTCTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCT
1 TTCTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGACCTGCT
* ***
38517109 TTCTCAATCTGCTCTGTTGCAACCTCAGGGAGATAAGACCTG
1 TTCTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGACCTG
38517151 ATGTGATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (44 bp):
TTCTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGACCTGCT
Found at i:38517183 original size:85 final size:85
Alignment explanation
Indices: 38517080--38517313 Score: 254
Period size: 85 Copynumber: 2.8 Consensus size: 85
38517070 AGTCTGCCCC
* * ** ***
38517080 ACTGCAACTTCAGGGGGATAAGACCTGCTT-TCTCAATCTGCTCTGTTGCAACCTCAGGGAGATA
1 ACTGCAACTTCAGAGGGATAAGACCT-ATTATCTCAATCCACTCCACTGCAACCTCAGGGAGATA
*
38517144 AGACCTGATGTGATATACTCT
65 AGACCTGATGCGATATACTCT
* * * *
38517165 ACTGCAACTTCAGAGGGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTTAGGGAGATAA
1 ACTGCAACTTCAGAGGGATAAGACCTATTATCTCAATCCACTCCACTGCAACCTCAGGGAGATAA
*
38517230 GACCTGATGCGATCTACTCT
66 GACCTGATGCGATATACTCT
* ** ** * * * *
38517250 ATTGCAACTTCAGATAGATAAGATTTTTTATTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGGGATAAGACCTATTATCTCAATCCACTCCACTGCAACCTCAGGGAGATA
38517314 GGATTACTGG
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
84 2 0.02
85 126 0.98
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (85 bp):
ACTGCAACTTCAGAGGGATAAGACCTATTATCTCAATCCACTCCACTGCAACCTCAGGGAGATAA
GACCTGATGCGATATACTCT
Found at i:38517185 original size:41 final size:41
Alignment explanation
Indices: 38517126--38517272 Score: 127
Period size: 41 Copynumber: 3.5 Consensus size: 41
38517116 TCTGCTCTGT
*
38517126 TGCAACCTCAGGGAGATAAGACCTGATGTGATATACTCTAC
1 TGCAACTTCAGGGAGATAAGACCTGATGTGATATACTCTAC
* * * * *
38517167 TGCAACTTCAGAGG-GATAAGATCTATTATTTCA-ATCCACTCCAC
1 TGCAACTTCAG-GGAGATAAGA-C-CTGATGTGATAT--ACTCTAC
* * * *
38517211 TGCAACTTTAGGGAGATAAGACCTGATGCGATCTACTCTAT
1 TGCAACTTCAGGGAGATAAGACCTGATGTGATATACTCTAC
**
38517252 TGCAACTTCAGATAGATAAGA
1 TGCAACTTCAGGGAGATAAGA
38517273 TTTTTTATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
41 40 0.49
42 9 0.11
43 9 0.11
44 23 0.28
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
TGCAACTTCAGGGAGATAAGACCTGATGTGATATACTCTAC
Found at i:38517215 original size:44 final size:44
Alignment explanation
Indices: 38517160--38517306 Score: 131
Period size: 44 Copynumber: 3.4 Consensus size: 44
38517150 GATGTGATAT
*
38517160 ACTCTACTGCAACTTCAGAGGGATAAGATCTATTATTTCAATCC
1 ACTCCACTGCAACTTCAGAGGGATAAGATCTATTATTTCAATCC
* * * * * *
38517204 ACTCCACTGCAACTTTAG-GGAGATAAGA-C-CTGA-TGCGATCT
1 ACTCCACTGCAACTTCAGAGG-GATAAGATCTATTATTTCAATCC
* * ** * * *
38517245 ACTCTATTGCAACTTCAGATAGATAAGATTTTTTATTTTAATCC
1 ACTCCACTGCAACTTCAGAGGGATAAGATCTATTATTTCAATCC
38517289 ACTCCACTGCAACTTCAG
1 ACTCCACTGCAACTTCAG
38517307 GGAGATAGGA
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
41 27 0.35
42 2 0.03
43 5 0.06
44 43 0.56
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (44 bp):
ACTCCACTGCAACTTCAGAGGGATAAGATCTATTATTTCAATCC
Found at i:38517459 original size:217 final size:216
Alignment explanation
Indices: 38517220--38517630 Score: 578
Period size: 217 Copynumber: 1.9 Consensus size: 216
38517210 CTGCAACTTT
* * * * **
38517220 AGGGAGATAAGACCTGATGCGATCTACTCTATTGCAACTTCAGATAGATAAGATTTTTTATTTTA
1 AGGGAGATAAGACCTAATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGACCTTTTATTTTA
* *
38517285 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATGTAC-TCCACTGTA-TCCT
66 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTAAATCTACTTCC-C--TACTCCT
* * *
38517348 CAGGG-AGGTAAAA-TCTGCCATCTTCGATTTGCTTCACTACTGCTTAGGGAGATAAGATCTGTT
128 -AGGGAAGATAAAATTC-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTT
38517411 TCTTCAGTATGCTCCGCTGTAACCTC
191 TCTTCAGTATGCTCCGCTGTAACCTC
*
38517437 AGGGAGATAAGACCTAATGCGATCTACTCTGCTGCAACTTCAAAGAGATAAGACCTTTTATTTTA
1 AGGGAGATAAGACCTAATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGACCTTTTATTTTA
* * * * *
38517502 ATCCGCTCCACTGCAACTTCAGGGAGATATGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGG
66 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTAAATCTACTTCCCTACTCCTAGG
* *
38517567 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTT
131 GAAGATAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTT
38517631 TGACCTATTC
Statistics
Matches: 171, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
215 5 0.03
216 58 0.34
217 105 0.61
218 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (216 bp):
AGGGAGATAAGACCTAATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGACCTTTTATTTTA
ATCCACTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTAAATCTACTTCCCTACTCCTAGG
GAAGATAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTC
AGTATGCTCCGCTGTAACCTC
Found at i:38517883 original size:130 final size:130
Alignment explanation
Indices: 38517521--38517856 Score: 582
Period size: 130 Copynumber: 2.6 Consensus size: 130
38517511 ACTGCAACTT
*
38517521 CAGGGAGATATGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC
1 CAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC
* *
38517586 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTTGACCTATTCCACTGTTGAC
66 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTCGACCTATTCCACTGCTGAC
* *
38517651 CAGGGAGATAGGATTAGTGGCTTAAATATGCTTCCCTACTCCTTGGGAAGATAAGATTCGCCGTC
1 CAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC
**
38517716 TTCGATCAACTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTCGACCTATTCCACTGCTGAC
66 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTCGACCTATTCCACTGCTGAC
* * *
38517781 CAGGGAGATAGGATTAGTGGCTTAAATCTTCTTCCCTACTCCTGGGGAAGATAAGATTCACCGTT
1 CAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC
38517846 TTCGATCTGCT
66 TTCGATCTGCT
38517857 TCGCTGTGGT
Statistics
Matches: 192, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 192 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (130 bp):
CAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTTCTTCGACCTATTCCACTGCTGAC
Found at i:38518140 original size:18 final size:18
Alignment explanation
Indices: 38518117--38518152 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
38518107 GCTTCAACAC
38518117 ATTCCTGCTCGGCTGACG
1 ATTCCTGCTCGGCTGACG
*
38518135 ATTCCTGCTTGGCTGACG
1 ATTCCTGCTCGGCTGACG
38518153 TCTCTAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.31, G:0.28, T:0.31
Consensus pattern (18 bp):
ATTCCTGCTCGGCTGACG
Found at i:38529117 original size:18 final size:18
Alignment explanation
Indices: 38529082--38529116 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
38529072 TAAACTGGAC
*
38529082 ATTTATTTGGTATATTTT
1 ATTTATTTGATATATTTT
38529100 ATTTATTTGATAT-TTTT
1 ATTTATTTGATATATTTT
38529117 TCATATCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (18 bp):
ATTTATTTGATATATTTT
Found at i:38529372 original size:3 final size:3
Alignment explanation
Indices: 38529364--38529438 Score: 125
Period size: 3 Copynumber: 25.0 Consensus size: 3
38529354 AGTCCTATTT
*
38529364 AAG AAG AAG AA- AGAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
38529409 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
38529439 TGACTATAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 1 0.01
3 66 0.97
4 1 0.01
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:38531023 original size:28 final size:29
Alignment explanation
Indices: 38530961--38531024 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
38530951 AAATAAACCA
*
38530961 AACTTATTAAAAATCCTAAAAATAAATTT
1 AACTTATTAAAAACCCTAAAAATAAATTT
* *
38530990 ATCTTATT-AAAACCCTAAATAT-AATTCT
1 AACTTATTAAAAACCCTAAAAATAAATT-T
38531018 AACTTAT
1 AACTTAT
38531025 AAGGACCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 4 0.13
28 19 0.63
29 7 0.23
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (29 bp):
AACTTATTAAAAACCCTAAAAATAAATTT
Found at i:38531202 original size:41 final size:42
Alignment explanation
Indices: 38531067--38531221 Score: 158
Period size: 41 Copynumber: 3.7 Consensus size: 42
38531057 AATTTATTAG
* * *
38531067 AAAACTTAA-ATATAATTTAG-AAATTAAATTCTACCCTATT
1 AAAACTTAAGATCTAATTTAGCAAAATAAATTCTAACCTATT
*
38531107 AAAACTTAA-ATCTAATTTAAAGCAAAATAAAATTCTAACCGATT
1 AAAACTTAAGATCTAATTT--AGCAAAAT-AAATTCTAACCTATT
* * * * *
38531151 ATAACCTAAGACCTAATTTAG-AAAATAAATTCTAACATAGT
1 AAAACTTAAGATCTAATTTAGCAAAATAAATTCTAACCTATT
*
38531192 AAAACTTAAGATCTAAATT-GCAAAATAAAT
1 AAAACTTAAGATCTAATTTAGCAAAATAAAT
38531222 CCTGACCGAT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
40 18 0.19
41 36 0.38
42 7 0.07
43 6 0.06
44 20 0.21
45 8 0.08
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.31
Consensus pattern (42 bp):
AAAACTTAAGATCTAATTTAGCAAAATAAATTCTAACCTATT
Found at i:38542532 original size:17 final size:16
Alignment explanation
Indices: 38542497--38542540 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
38542487 GGACCAACCC
*
38542497 TTTTTTAAATTTGTAA
1 TTTTTTATATTTGTAA
*
38542513 TTTTTTATATTATGTTA
1 TTTTTTATATT-TGTAA
38542530 TTTTTATATAT
1 TTTTT-TATAT
38542541 ATTGCGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.42
17 9 0.38
18 5 0.21
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
TTTTTTATATTTGTAA
Found at i:38542652 original size:26 final size:26
Alignment explanation
Indices: 38542608--38542657 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
38542598 TTAAGATGAT
*
38542608 TATATATAAAATTTTAATAATAAAAA
1 TATATATAAAATTTAAATAATAAAAA
*
38542634 TATATA-AAAATATTAAATATTAAA
1 TATATATAAAAT-TTAAATAATAAA
38542658 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TATATATAAAATTTAAATAATAAAAA
Found at i:38550223 original size:29 final size:29
Alignment explanation
Indices: 38550181--38550324 Score: 139
Period size: 29 Copynumber: 5.0 Consensus size: 29
38550171 AATTGTGATA
38550181 TGCAAACCCTAGGAACATGCGAGCCTATG
1 TGCAAACCCTAGGAACATGCGAGCCTATG
* * *
38550210 TGCAAACCCGAGGAACATGTGAGCTTATG
1 TGCAAACCCTAGGAACATGCGAGCCTATG
*
38550239 TG-AGAACCCTAGTAACATGCGAGCCTATG
1 TGCA-AACCCTAGGAACATGCGAGCCTATG
* * * ** *
38550268 TGAAAACCCTAGAAACTTGAAAGCCTATA
1 TGCAAACCCTAGGAACATGCGAGCCTATG
* **
38550297 T-AAAATCCCTAGGTGCATGCGAGCCTAT
1 TGCAAA-CCCTAGGAACATGCGAGCCTAT
38550325 ATGCCATGTG
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
28 5 0.05
29 88 0.94
30 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (29 bp):
TGCAAACCCTAGGAACATGCGAGCCTATG
Found at i:38550307 original size:58 final size:58
Alignment explanation
Indices: 38550178--38550324 Score: 154
Period size: 58 Copynumber: 2.5 Consensus size: 58
38550168 TATAATTGTG
* * * * ** *
38550178 ATATGCAAACCCTAGGAACATGCGAGCCTATGTGCAAACCCGAGGAACATGTGAGCTT
1 ATATGAAAACCCTAGTAACATGCGAGCCTATGTGAAAACCCGAGAAACATGAAAGCCT
* * * *
38550236 ATGTGAGAACCCTAGTAACATGCGAGCCTATGTGAAAACCCTAGAAACTTGAAAGCCT
1 ATATGAAAACCCTAGTAACATGCGAGCCTATGTGAAAACCCGAGAAACATGAAAGCCT
*
38550294 ATAT-AAAATCCCTAGGT-GCATGCGAGCCTAT
1 ATATGAAAA-CCCTA-GTAACATGCGAGCCTAT
38550325 ATGCCATGTG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
57 3 0.04
58 68 0.93
59 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (58 bp):
ATATGAAAACCCTAGTAACATGCGAGCCTATGTGAAAACCCGAGAAACATGAAAGCCT
Found at i:38550337 original size:17 final size:17
Alignment explanation
Indices: 38550312--38550344 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38550302 TCCCTAGGTG
38550312 CATGCGAGCCTATATGC
1 CATGCGAGCCTATATGC
*
38550329 CATGTGAGCCTATATG
1 CATGCGAGCCTATATG
38550345 ATCAAGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (17 bp):
CATGCGAGCCTATATGC
Found at i:38557835 original size:23 final size:23
Alignment explanation
Indices: 38557809--38557877 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
38557799 ATATAAGATG
38557809 ATATATGATGAAATTAAATATTA
1 ATATATGATGAAATTAAATATTA
*
38557832 ATATATGAAGAAACTTAAAATATTA
1 ATATATGATGAAA-TT-AAATATTA
* * *
38557857 ATACATAATAAAATTATAATA
1 ATATATGATGAAATTA-AATA
38557878 CTGATAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
23 13 0.34
24 8 0.21
25 17 0.45
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATATGATGAAATTAAATATTA
Found at i:38557837 original size:25 final size:25
Alignment explanation
Indices: 38557809--38557859 Score: 79
Period size: 23 Copynumber: 2.1 Consensus size: 25
38557799 ATATAAGATG
*
38557809 ATATATGATGAAA-TT-AAATATTA
1 ATATATGAAGAAACTTAAAATATTA
38557832 ATATATGAAGAAACTTAAAATATTA
1 ATATATGAAGAAACTTAAAATATTA
38557857 ATA
1 ATA
38557860 CATAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.48
24 2 0.08
25 11 0.44
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (25 bp):
ATATATGAAGAAACTTAAAATATTA
Found at i:38557889 original size:3 final size:3
Alignment explanation
Indices: 38557850--38557947 Score: 85
Period size: 3 Copynumber: 33.0 Consensus size: 3
38557840 AGAAACTTAA
* * * * *
38557850 AAT ATT AAT ACAT AAT AA- AAT TAT AAT ACT GAT AAT AAT ATAT TAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
** *
38557896 AAT TCT AA- AAC AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
38557942 AAT AAT
1 AAT AAT
38557948 GAGCTTAAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
2 6 0.08
3 65 0.86
4 5 0.07
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:38557964 original size:25 final size:25
Alignment explanation
Indices: 38557908--38557987 Score: 89
Period size: 21 Copynumber: 3.3 Consensus size: 25
38557898 TTCTAAAACA
38557908 AAATAATAATA-ATAATAATAA--T
1 AAATAATAATATATAATAATAACTT
*
38557930 -AATAATAATA-ATAATAATGAGCTT
1 AAATAATAATATATAATAAT-AACTT
*
38557954 AAATACTAATATATAATAATAACTT
1 AAATAATAATATATAATAATAACTT
38557979 AAAATAATA
1 -AAATAATA
38557988 GTACATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
21 18 0.38
22 1 0.02
24 1 0.02
25 13 0.27
26 15 0.31
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.33
Consensus pattern (25 bp):
AAATAATAATATATAATAATAACTT
Found at i:38558057 original size:12 final size:10
Alignment explanation
Indices: 38558029--38558056 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
38558019 AAAATGAATG
38558029 AAAATATAAA
1 AAAATATAAA
38558039 AAAATATAAA
1 AAAATATAAA
38558049 AAAATATA
1 AAAATATA
38558057 TGATTAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAATATAAA
Found at i:38559889 original size:86 final size:86
Alignment explanation
Indices: 38559792--38560048 Score: 487
Period size: 86 Copynumber: 3.0 Consensus size: 86
38559782 CTTTGACCAT
38559792 TTTTTTGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTA
1 TTTTTT-ATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTA
38559857 CTGCTCAGGGAGATAGGACTAG
65 CTGCTCAGGGAGATAGGACTAG
38559879 TTTTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
1 TTTTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
38559944 TGCTCAGGGAGATAGGACTAG
66 TGCTCAGGGAGATAGGACTAG
38559965 TTTTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
1 TTTTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
* *
38560030 TGCTTAGGAAGATAGGACT
66 TGCTCAGGGAGATAGGACT
38560049 GGTGGCTTAA
Statistics
Matches: 168, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
86 162 0.96
87 6 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (86 bp):
TTTTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
TGCTCAGGGAGATAGGACTAG
Found at i:38560132 original size:44 final size:44
Alignment explanation
Indices: 38560105--38560430 Score: 125
Period size: 44 Copynumber: 7.5 Consensus size: 44
38560095 CGTCTTCGAT
* *
38560105 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
1 CTACTCCACTACTGCTCAGGCAGATAAGATCTGCAATCTTCAAC
* **** ** *
38560149 CTACTCCACTGCTGCTCAGGCAGATAAGA-CTGGTGGCTAAAAT
1 CTACTCCACTACTGCTCAGGCAGATAAGATCTGCAATCTTCAAC
* * * * * * * *
38560192 CTGCTTTCTACTA-T-CTCGGGAAGATAAAAT-TCGCCATCTTCGAT
1 CTAC--TCCACTACTGCTCAGGCAGATAAGATCT-GCAATCTTCAAC
* * *
38560236 CTGCTCCACTACTGCTTAGGGAGATAAGATCTAG-AATCTTCAAC
1 CTACTCCACTACTGCTCAGGCAGATAAGATCT-GCAATCTTCAAC
* * * * * * *
38560280 CTACTCCACTGCTACTCAGGGAGATAGGA-CT--AGTGGCTTAAAT
1 CTACTCCACTACTGCTCAGGCAGATAAGATCTGCAAT--CTTCAAC
* * * ** * * *
38560323 ATGCTTCCTACTA-T-CTCAGGAAGATAAGAT-TCGCTGTTTTCGAT
1 CTAC-TCC-ACTACTGCTCAGGCAGATAAGATCT-GCAATCTTCAAC
* * *
38560367 CTTCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
1 CTACTCCACTACTGCTCAGGCAGATAAGATCTGCAATCTTCAAC
* *
38560411 CTACTCCGCTGCTGCTCAGG
1 CTACTCCACTACTGCTCAGG
38560431 GGGATAAGGC
Statistics
Matches: 202, Mismatches: 62, Indels: 36
0.67 0.21 0.12
Matches are distributed among these distances:
41 2 0.01
42 10 0.05
43 51 0.25
44 126 0.62
45 11 0.05
46 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (44 bp):
CTACTCCACTACTGCTCAGGCAGATAAGATCTGCAATCTTCAAC
Found at i:38560150 original size:131 final size:131
Alignment explanation
Indices: 38559999--38560592 Score: 861
Period size: 131 Copynumber: 4.5 Consensus size: 131
38559989 ACAGGAAGAC
* * *
38559999 AAGATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGAAGATAGGACTGGTGGCTTAAATCTG
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTG
* * * *
38560064 CTTCCTACTTTCTCGGGAATATAAGATTCATCGTCTTCGATCTACTCCACTACTGCTTAGGGAGA
66 CTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
38560129 T
131 T
* * *
38560130 AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGACTGGTGGCTAAAATCTG
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTG
* * * *
38560195 CTTTCTACTATCTCGGGAAGATAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
66 CTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
38560260 T
131 T
* * *
38560261 AAGATCTAG-AATCTTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTAGTGGCTTAAATAT
1 AAGATCT-GCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCT
* * * * *
38560325 GCTTCCTACTATCTCAGGAAGATAAGATTCGCTGTTTTCGATCTTCTCCACTACTGCTTAGGGAG
65 GCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
38560390 AT
130 AT
* * *
38560392 AAGATCTGCAATCTTCAACCTACTCCGCTGCTGCTCAGGGGGATAAGG-CTGGTGGCTTAAATTT
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTGGTGGCTTAAATCT
* * *
38560456 GCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCTTAGGGA
65 GCTT-CCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
38560521 GAT
129 GAT
* *
38560524 AAGATTTGCAATCTTCAACTTACTCCACTGCTGCTCAGGGAGATAAGG-CTGGTGGCTTAAATCT
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTGGTGGCTTAAATCT
38560588 GCTTC
65 GCTTC
38560593 GCTGCCAATA
Statistics
Matches: 415, Mismatches: 44, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
130 1 0.00
131 292 0.70
132 122 0.29
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
AAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTG
CTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
T
Found at i:38561957 original size:3 final size:3
Alignment explanation
Indices: 38561943--38561980 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
38561933 GCCTCTCATT
* *
38561943 TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
38561981 TCTTTTTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:38567355 original size:10 final size:10
Alignment explanation
Indices: 38567340--38567376 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
38567330 AGTTGCTACG
38567340 GAAAAAGAGA
1 GAAAAAGAGA
38567350 GAAAAAGAGA
1 GAAAAAGAGA
*
38567360 GAAAGAGAAGA
1 GAAAAAG-AGA
38567371 GAAAAA
1 GAAAAA
38567377 AAAGGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAAGAGA
Found at i:38568330 original size:18 final size:18
Alignment explanation
Indices: 38568307--38568351 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
38568297 TTGATATGGT
*
38568307 TGGTGGTGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
**
38568325 TGGTGGCGTTGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
38568343 TGGTGGCGA
1 TGGTGGCGA
38568352 TCATTGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.04, G:0.51, T:0.20
Consensus pattern (18 bp):
TGGTGGCGAAGAAGAAGG
Found at i:38573698 original size:287 final size:287
Alignment explanation
Indices: 38572827--38573780 Score: 1614
Period size: 287 Copynumber: 3.3 Consensus size: 287
38572817 CATGTTGAAA
* * * * *
38572827 AAAAAGTTAGTAAAACACTCTTACCTCGGCCATTTCTTCCTATCTTTTTCTCTGCATTTTATTAC
1 AAAAATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGTATTTTTTTCTCCGCATTTTATTAC
38572892 TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAATT
66 TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAATT
* * *
38572957 TAGTGTAAAGAAAACCATTATTCCCTCCATTTGCT-AGTATTATTTT-CCTGAATTTTATTACTT
131 TAGTGTAAAAAAAACCCTTATTCCCGCCATTTGCTCA-TATTATTTTCCCT-AATTTTATTACTT
*
38573020 TCACTAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAA
194 TCAATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAA
38573085 TATTTGTATTAATTATTTCTGAA-TTTTT
259 TATTTGTATTAATTATTTCTGAATTTTTT
* *
38573113 AAAACATTTTGTAAAACACTCTTACCTCGGCCATTTCTTTGTATTTTTTTCTTCGCATTTTATTA
1 AAAA-ATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGTATTTTTTTCTCCGCATTTTATTA
38573178 CTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTG-TTTTTAAATTAAT
65 CTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAAT
* * * *
38573242 TTAGTGT-AAAAAAACCCTTATTCCTGTCATTTGCTCGTATTATTTTCCCAAATTTTATTACTTT
130 TTAGTGTAAAAAAAACCCTTATTCCCGCCATTTGCTCATATTATTTTCCCTAATTTTATTACTTT
38573306 CAATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAAT
195 CAATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAAT
*
38573371 ATTTGTATTAATTATTTCTGAATTTTTA
260 ATTTGTATTAATTATTTCTGAATTTTTT
* *
38573399 AAAAAATTTGTAAAACACTCTTACCTCGGCTATTTCTTCGTATTTTTTTCTCCGCATTTTATTAC
1 AAAAATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGTATTTTTTTCTCCGCATTTTATTAC
*
38573464 TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTATTTTAGTGTGTTTTTTAAATTAATT
66 TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAATT
38573529 TAGTGTAAAAAAAACCCTTATTCCCGCCATTTGCTCATATTATTTTCCCTAATTTTATTACTTTC
131 TAGTGTAAAAAAAACCCTTATTCCCGCCATTTGCTCATATTATTTTCCCTAATTTTATTACTTTC
38573594 AATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAATA
196 AATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAATA
* *
38573659 ATTGTATTAATTATTTCTAAATTTTTT
261 TTTGTATTAATTATTTCTGAATTTTTT
* **
38573686 AAAAATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGGA-TTTTTTCTCTACATTTTATTAC
1 AAAAATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGTATTTTTTTCTCCGCATTTTATTAC
*
38573750 TTTAAAAAATTTCATAATTTCTAATTTTATA
66 TTTAAAAAATATCATAATTTCTAATTTTATA
38573781 TTTTTACTTT
Statistics
Matches: 628, Mismatches: 34, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
285 238 0.38
286 104 0.17
287 286 0.46
ACGTcount: A:0.31, C:0.13, G:0.06, T:0.50
Consensus pattern (287 bp):
AAAAATTTTGTAAAACACTCTTACCTCGGCCATTTCTTCGTATTTTTTTCTCCGCATTTTATTAC
TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAATT
TAGTGTAAAAAAAACCCTTATTCCCGCCATTTGCTCATATTATTTTCCCTAATTTTATTACTTTC
AATAAAATAATTTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTCAAATA
TTTGTATTAATTATTTCTGAATTTTTT
Found at i:38573888 original size:15 final size:15
Alignment explanation
Indices: 38573868--38573901 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
38573858 AATATACAAG
*
38573868 TTTCGTTTTTTTTCT
1 TTTCGTATTTTTTCT
*
38573883 TTTCGTATTTTTTGT
1 TTTCGTATTTTTTCT
38573898 TTTC
1 TTTC
38573902 TTACACATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.12, G:0.09, T:0.76
Consensus pattern (15 bp):
TTTCGTATTTTTTCT
Found at i:38574200 original size:3 final size:3
Alignment explanation
Indices: 38574192--38574315 Score: 59
Period size: 3 Copynumber: 42.3 Consensus size: 3
38574182 CTTCCTCCCC
* * *
38574192 TCT TCT TCT TCT TCT TCT TCT T-T TTT TC- TCT TCT CCT T-T CCT T-T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * *
38574236 TCT T-T CCT TCT TTT TCTT TCT T-T T-T TCT TCT TCT CCTT TCGT T-T
1 TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TC-T TC-T TCT
* *
38574280 TCT T-T CCT TCT TTT TCTT TCTT TCTT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TC-T TC-T TC-T TCT TCT TCT T
38574316 TCCCTCTCCT
Statistics
Matches: 94, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
2 15 0.16
3 61 0.65
4 18 0.19
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:38574233 original size:46 final size:44
Alignment explanation
Indices: 38574163--38574314 Score: 137
Period size: 44 Copynumber: 3.4 Consensus size: 44
38574153 AAAAAAATAC
* * *
38574163 CTTTTTTTCTTTCTTTTCCCTTCCTCCCCTCTTCTTCTTCTTCTTCTT
1 CTTTTTTTC-TTCTTCTCCTTTCCT--CCTCTT-TCCTTCTTCTTCTT
** *
38574211 CTTTTTTTC-TCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTT
1 CTTTTTTTCTTCTTCTCCTTTCCTCCTCTTTCCTTCTTCTTCTT
* ** *
38574254 -TCTTTTTTCTTCTTCTCCTTTCGTTTTCTTTCCTTCTTTTTCTTT
1 CT-TTTTTTCTTCTTCTCCTTTCCTCCTCTTTCCTTCTTCTTC-TT
*
38574299 CTTTCTTTCTTCTTCT
1 CTTTTTTTCTTCTTCT
38574315 TTCCCTCTCC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
42 1 0.01
43 19 0.21
44 35 0.38
45 15 0.16
46 13 0.14
48 9 0.10
ACGTcount: A:0.00, C:0.32, G:0.01, T:0.68
Consensus pattern (44 bp):
CTTTTTTTCTTCTTCTCCTTTCCTCCTCTTTCCTTCTTCTTCTT
Found at i:38574259 original size:44 final size:45
Alignment explanation
Indices: 38574199--38574314 Score: 184
Period size: 44 Copynumber: 2.6 Consensus size: 45
38574189 CCCTCTTCTT
*
38574199 CTTCTTCTTC-TTCTTTTTTTC-TCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTTCTTCTTCTCCTTTCCTTTTCTTTC
*
38574242 CTTCTTTTTCTTTC-TTTTTTCTTCTTCTCCTTTCGTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTTCTTCTTCTCCTTTCCTTTTCTTTC
*
38574286 CTTCTTTTTCTTTCTTTCTTTCTTCTTCT
1 CTTCTTTTTCTTTCTTTTTTTCTTCTTCT
38574315 TTCCCTCTCC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
43 16 0.24
44 38 0.57
45 13 0.19
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (45 bp):
CTTCTTTTTCTTTCTTTTTTTCTTCTTCTCCTTTCCTTTTCTTTC
Found at i:38574402 original size:27 final size:27
Alignment explanation
Indices: 38574372--38574433 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
38574362 TATAAGGGCA
* *
38574372 GTGCTGCCCATGGGAATGGCACCATTG
1 GTGCCGCCCATGGGAATGACACCATTG
*
38574399 GTGCCGCCCATGGGAATGACACCTTTG
1 GTGCCGCCCATGGGAATGACACCATTG
38574426 GTGCCGCC
1 GTGCCGCC
38574434 TATCAGTGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (27 bp):
GTGCCGCCCATGGGAATGACACCATTG
Found at i:38574884 original size:19 final size:17
Alignment explanation
Indices: 38574841--38574885 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
38574831 ATGTATATAC
*
38574841 ATACATTTTAAAATAAT
1 ATACATATTAAAATAAT
38574858 AGTACATATTAAAATAATGT
1 A-TACATATTAAAATAA--T
38574878 ATACATAT
1 ATACATAT
38574886 ATATAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 7 0.29
20 2 0.08
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (17 bp):
ATACATATTAAAATAAT
Found at i:38577528 original size:113 final size:113
Alignment explanation
Indices: 38577356--38577573 Score: 312
Period size: 113 Copynumber: 1.9 Consensus size: 113
38577346 ATTTGAGGTC
* * * * *
38577356 TGTTTTCATAGTTTCCTTAAGATAAATTCGGCCGTTCCTATGGTGTTGGAGAAACGTTGGTCGAT
1 TGTTTTCACAGTTTCCTTAAGACAAATTCGGCCGCTCCTATGGTGATGGAGAAACGTTGGTCGAC
* *
38577421 TGTCTGCCAAGATAT-AACAACAAGATGAGCACGACAGTAGTTGGGGCA
66 TGTCTCCCAAGAT-TCAACAACAAGATGAACACGACAGTAGTTGGGGCA
* ** *
38577469 TGTTTTCACAGTTTCCTTAAGACAGATTCGGTTGCTCCTATGGTGATGGAGAAATGTTGGTCGAC
1 TGTTTTCACAGTTTCCTTAAGACAAATTCGGCCGCTCCTATGGTGATGGAGAAACGTTGGTCGAC
*
38577534 TGTCTCCCAGGATTCAACAACAAGATGAACACGACAGTAG
66 TGTCTCCCAAGATTCAACAACAAGATGAACACGACAGTAG
38577574 CACGACTGCA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
112 1 0.01
113 91 0.99
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (113 bp):
TGTTTTCACAGTTTCCTTAAGACAAATTCGGCCGCTCCTATGGTGATGGAGAAACGTTGGTCGAC
TGTCTCCCAAGATTCAACAACAAGATGAACACGACAGTAGTTGGGGCA
Found at i:38581581 original size:39 final size:39
Alignment explanation
Indices: 38581538--38581731 Score: 201
Period size: 39 Copynumber: 5.2 Consensus size: 39
38581528 ACAGAAATCC
*
38581538 GGTGATTATTCTGGCTATGTGCCTAGCAGGCTGTGTGCT
1 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
38581577 GGTGATTATTCGGGCTATGTGCCTAGCA------G-GC-
1 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
** * * * *
38581608 --TGATTATTTAGGCTATATGCCTAGTAGGCTGTCTACT
1 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
* * *
38581645 GATGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTACT
1 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
* *
38581684 GGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGCC
1 GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
38581723 GGTGTATTA
1 GGTG-ATTA
38581732 AAAGTTGTAT
Statistics
Matches: 128, Mismatches: 16, Indels: 21
0.78 0.10 0.13
Matches are distributed among these distances:
29 22 0.17
32 2 0.02
33 1 0.01
36 1 0.01
39 98 0.77
40 4 0.03
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.35
Consensus pattern (39 bp):
GGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCT
Found at i:38581621 original size:29 final size:29
Alignment explanation
Indices: 38581579--38581638 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
38581569 TGTGTGCTGG
* *
38581579 TGATTATTCGGGCTATGTGCCTAGCAGGC
1 TGATTATTCAGGCTATATGCCTAGCAGGC
* *
38581608 TGATTATTTAGGCTATATGCCTAGTAGGC
1 TGATTATTCAGGCTATATGCCTAGCAGGC
38581637 TG
1 TG
38581639 TCTACTGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (29 bp):
TGATTATTCAGGCTATATGCCTAGCAGGC
Found at i:38581651 original size:68 final size:68
Alignment explanation
Indices: 38581540--38581677 Score: 206
Period size: 68 Copynumber: 2.0 Consensus size: 68
38581530 AGAAATCCGG
* * * * *
38581540 TGATTATTCTGGCTATGTGCCTAGCAGGCTGTGTGCTGGTGATTATTCGGGCTATGTGCCTAGCA
1 TGATTATTCTGGCTATATGCCTAGCAGGCTGTCTACTGATGATTATTCAGGCTATGTGCCTAGCA
38581605 GGC
66 GGC
*
38581608 TGATTATT-TAGGCTATATGCCTAGTAGGCTGTCTACTGATGATTATTCAGGCTATGTGCCTAGC
1 TGATTATTCT-GGCTATATGCCTAGCAGGCTGTCTACTGATGATTATTCAGGCTATGTGCCTAGC
38581672 AGGC
65 AGGC
38581676 TG
1 TG
38581678 TGTACTGGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 1 0.02
68 62 0.98
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (68 bp):
TGATTATTCTGGCTATATGCCTAGCAGGCTGTCTACTGATGATTATTCAGGCTATGTGCCTAGCA
GGC
Found at i:38582900 original size:98 final size:98
Alignment explanation
Indices: 38582731--38582940 Score: 366
Period size: 98 Copynumber: 2.1 Consensus size: 98
38582721 CATGGCCTAA
** *
38582731 CACACGGGTGTGTGGCTTGGCCGTGTGACCCAAGTCAGTGAGTTACAAGGGCACGGGCACAGGCT
1 CACACGGCCGTGTGGCTTGGCCGTGTGACCCAAGTCAGTGAGTTACAAGGGCACGGACACAGGCT
*
38582796 GGGACACGACCGTGTGTCCCTATTTTGAATGCC
66 AGGACACGACCGTGTGTCCCTATTTTGAATGCC
38582829 CACACGGCCGTGTGGCTTGGCCGTGTGACCCAAGTCAGTGAGTTACAAGGGCACGGACACAGGCT
1 CACACGGCCGTGTGGCTTGGCCGTGTGACCCAAGTCAGTGAGTTACAAGGGCACGGACACAGGCT
*
38582894 AGGACACGGCCGTGTGTCCCTATTTTGAATGCC
66 AGGACACGACCGTGTGTCCCTATTTTGAATGCC
*
38582927 CACACGGCCATGTG
1 CACACGGCCGTGTG
38582941 ACCCCTGTAG
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 106 1.00
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.20
Consensus pattern (98 bp):
CACACGGCCGTGTGGCTTGGCCGTGTGACCCAAGTCAGTGAGTTACAAGGGCACGGACACAGGCT
AGGACACGACCGTGTGTCCCTATTTTGAATGCC
Found at i:38585857 original size:78 final size:78
Alignment explanation
Indices: 38585761--38586061 Score: 333
Period size: 78 Copynumber: 3.9 Consensus size: 78
38585751 AAAATTGAAT
* * * * *
38585761 AAAATCTGTTGAATGACAGGAAA-AGAATCCTGAAAGAAAATTATTCAGTTGATTTT-TGTTTGA
1 AAAATCTGTTAAACGACA-GAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTTGA
38585824 AACAAAAAATCAAA
65 AACAAAAAATCAAA
*
38585838 AAAATACTGTTAAACGACAGAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTCGA
1 AAAAT-CTGTTAAACGACAGAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTTGA
38585903 AAC-AAAAATCAAA
65 AACAAAAAATCAAA
* * * * * *
38585916 CAAATCATGTTAGACGTCAGAAATAAAATCCTAAAACAAGATTGTTCAATTGATTTTCTGTTTG-
1 AAAATC-TGTTAAACGACAGAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTTGA
*
38585980 AACAAAAAATTAAA
65 AACAAAAAATCAAA
* * * * * ** * *
38585994 CAAGTCCTGTTAAACGGCAGGAAT-AAATCTTGAAACAGGATTGTTCAATTGAATTTCTGTTTGA
1 AAAAT-CTGTTAAACGACAGAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTTGA
38586058 AACA
65 AACA
38586062 GAATACAATT
Statistics
Matches: 195, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
77 48 0.25
78 137 0.70
79 10 0.05
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.29
Consensus pattern (78 bp):
AAAATCTGTTAAACGACAGAAATAAAATCCTGAAACAAAATTATTCAATTGATTTTCTGTTTGAA
ACAAAAAATCAAA
Found at i:38589149 original size:44 final size:44
Alignment explanation
Indices: 38589081--38589171 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
38589071 GTGAGTTAAA
*
38589081 TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGAGAAAC
*
38589125 TAATATTAAAATAACCTACCCTAATCAAAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGAGAAAC
38589169 TAA
1 TAA
38589172 AAACAGAGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.27
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGAGAAAC
Found at i:38591077 original size:44 final size:44
Alignment explanation
Indices: 38591027--38591117 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
38591017 GTAGGTCAAA
* * *
38591027 TAATATTAAAATAACTTATACTAATCAGAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAATGAGAAAC
* *
38591071 TAATATTAAAATAGCCTACACTAATCAGAGTTTAAATGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAATGAGAAAC
38591115 TAA
1 TAA
38591118 AAACAGAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAGAGTTTAAATGAGAAAC
Found at i:38591290 original size:9 final size:9
Alignment explanation
Indices: 38591266--38591297 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
38591256 TTCATCATAT
38591266 TTGA-TAAA
1 TTGATTAAA
38591274 TT-ATTAAA
1 TTGATTAAA
38591282 TTGATTAAA
1 TTGATTAAA
38591291 TTGATTA
1 TTGATTA
38591298 TTCATGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.05
8 8 0.36
9 13 0.59
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (9 bp):
TTGATTAAA
Found at i:38606286 original size:11 final size:9
Alignment explanation
Indices: 38606264--38606354 Score: 50
Period size: 9 Copynumber: 10.4 Consensus size: 9
38606254 ATTAAAAATG
38606264 TTATAAAAA
1 TTATAAAAA
38606273 TTAT-AAAA
1 TTATAAAAA
*
38606281 TTATTAAAAG
1 TTA-TAAAAA
*
38606291 TTGTAAAAA
1 TTATAAAAA
38606300 -TATAAAAA
1 TTATAAAAA
* *
38606308 -AAT-AGAA
1 TTATAAAAA
38606315 TTATAAACAA
1 TTATAAA-AA
*
38606325 TTATTAGAAA
1 TTA-TAAAAA
*
38606335 --ATAATAA
1 TTATAAAAA
*
38606342 TTATAATAA
1 TTATAAAAA
38606351 TTAT
1 TTAT
38606355 CCATAATTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
7 7 0.11
8 19 0.30
9 22 0.35
10 12 0.19
11 3 0.05
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:38606288 original size:18 final size:17
Alignment explanation
Indices: 38606264--38606354 Score: 62
Period size: 18 Copynumber: 5.2 Consensus size: 17
38606254 ATTAAAAATG
38606264 TTATAAAAATTATAAAA
1 TTATAAAAATTATAAAA
* *
38606281 TTATTAAAAGTTGTAAAA
1 TTA-TAAAAATTATAAAA
* * *
38606299 ATATAAAAA-AATAGAA
1 TTATAAAAATTATAAAA
38606315 TTATAAACAATTATTAGAAA
1 TTATAAA-AATTA-TA-AAA
*
38606335 --ATAATAATTATAATAA
1 TTATAAAAATTATAA-AA
38606351 TTAT
1 TTAT
38606355 CCATAATTAA
Statistics
Matches: 55, Mismatches: 11, Indels: 15
0.68 0.14 0.19
Matches are distributed among these distances:
15 1 0.02
16 14 0.25
17 15 0.27
18 21 0.38
19 2 0.04
20 2 0.04
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (17 bp):
TTATAAAAATTATAAAA
Found at i:38616280 original size:10 final size:10
Alignment explanation
Indices: 38616261--38616307 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
38616251 TTACATCTCA
38616261 AAAAATTATAT
1 AAAAA-TATAT
38616272 AAAAATATAT
1 AAAAATATAT
*
38616282 AAAAAAACT-T
1 AAAAATA-TAT
*
38616292 AAAAATATAA
1 AAAAATATAT
38616302 AAAAAT
1 AAAAAT
38616308 CCAAAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 1 0.03
10 24 0.77
11 6 0.19
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAATATAT
Found at i:38616334 original size:33 final size:34
Alignment explanation
Indices: 38616286--38616362 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 34
38616276 ATATATAAAA
* **
38616286 AAACTT-AAAAATATAAAAAAA-TCCAAAATTTT
1 AAACTTAAAAAATATAAAAAAACTACAAAATCCT
38616318 AAACTTAAAAAATATAAAAAAACTACAAAATCCT
1 AAACTTAAAAAATATAAAAAAACTACAAAATCCT
38616352 AAATCTTAAAA
1 AAA-CTTAAAA
38616363 TCCATAAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 6 0.15
33 15 0.38
34 11 0.28
35 7 0.18
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.25
Consensus pattern (34 bp):
AAACTTAAAAAATATAAAAAAACTACAAAATCCT
Found at i:38617688 original size:23 final size:23
Alignment explanation
Indices: 38617662--38617755 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
38617652 AAGTTAGAAG
38617662 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
38617685 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
38617708 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
38617731 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
38617754 AG
1 AG
38617756 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:38620695 original size:23 final size:23
Alignment explanation
Indices: 38620669--38620762 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
38620659 AAGTTAGAAG
38620669 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
38620692 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
38620715 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
38620738 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
38620761 AG
1 AG
38620763 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:38623066 original size:3 final size:3
Alignment explanation
Indices: 38623058--38623098 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
38623048 GAAGTTGGAA
38623058 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
38623099 ATTAATATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:38623257 original size:18 final size:18
Alignment explanation
Indices: 38623227--38623275 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
38623217 CACGTGATAA
38623227 ATATAAA-TTTAAAAAAT
1 ATATAAATTTTAAAAAAT
38623244 ATATAAATTTTAAAAAAT
1 ATATAAATTTTAAAAAAT
38623262 -TATAAACTTTTAAA
1 ATATAAA-TTTTAAA
38623276 TGTTAACCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 13 0.43
18 17 0.57
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATAAATTTTAAAAAAT
Found at i:38623327 original size:18 final size:18
Alignment explanation
Indices: 38623304--38623354 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
38623294 AATTATACTC
*
38623304 ATTTTTATTAATTTATAT
1 ATTTTTATTAATTTATAA
* *
38623322 ATTTTTA-AAGATTTTTAA
1 ATTTTTATTA-ATTTATAA
38623340 ATTTTT-TTAATTTAT
1 ATTTTTATTAATTTAT
38623355 GCTCGTCACA
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTTTATTAATTTATAA
Found at i:38629918 original size:35 final size:35
Alignment explanation
Indices: 38629874--38629946 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
38629864 TTACTTCACA
38629874 AAATACATGCACAAATTCAGGTTCTATGTTGCAAC
1 AAATACATGCACAAATTCAGGTTCTATGTTGCAAC
38629909 AAATACATGCACAAATTCAGGTTCTATGTTGCAAC
1 AAATACATGCACAAATTCAGGTTCTATGTTGCAAC
38629944 AAA
1 AAA
38629947 AGTATGCGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (35 bp):
AAATACATGCACAAATTCAGGTTCTATGTTGCAAC
Found at i:38644680 original size:58 final size:58
Alignment explanation
Indices: 38644581--38644703 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 58
38644571 GCTGTGTGTC
* ** * *
38644581 CCTTATTTCTAGGTATTTTTTAGATTGCCCTAAAACTTTTAGAATTTTTCCAAATTAGT
1 CCTTGTTT-TAGGTATTTTAAAGATTGCCCTAAAACTTTTAGAACTGTTCCAAATTAGT
* * *
38644640 CTTTGTTTTAGGTATTTTAAATATTGCGCTAAAACTTTTAGAACTGTTCCAAATTAGT
1 CCTTGTTTTAGGTATTTTAAAGATTGCCCTAAAACTTTTAGAACTGTTCCAAATTAGT
38644698 CCTTGT
1 CCTTGT
38644704 CTGTTTGTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
58 49 0.89
59 6 0.11
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (58 bp):
CCTTGTTTTAGGTATTTTAAAGATTGCCCTAAAACTTTTAGAACTGTTCCAAATTAGT
Done.