Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 15 of 161
Found at i:5039530 original size:22 final size:23
Alignment explanation
Indices: 5039469--5039539 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
5039459 ACGTGATAAT
*
5039469 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
5039492 GTGTAAAAAATACATACATAATATA
1 AT-T-AAAAATATATACATAATATA
*
5039517 ATT-AAAATATATACATAAGATA
1 ATTAAAAATATATACATAATATA
5039539 A
1 A
5039540 CATGTAAAAN
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 18 0.45
23 1 0.03
24 2 0.05
25 19 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:5040782 original size:30 final size:30
Alignment explanation
Indices: 5040746--5040804 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
5040736 TGCAAAGCAT
5040746 AAATT-AAAAGACTCAACTCAACTCTCGCAG
1 AAATTAAAAAG-CTCAACTCAACTCTCGCAG
* *
5040776 AAATTAAAAAGCTCAACTCACCTTTCGCA
1 AAATTAAAAAGCTCAACTCAACTCTCGCA
5040805 ATATGAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.22
Consensus pattern (30 bp):
AAATTAAAAAGCTCAACTCAACTCTCGCAG
Found at i:5041039 original size:79 final size:77
Alignment explanation
Indices: 5040910--5041911 Score: 682
Period size: 72 Copynumber: 13.2 Consensus size: 77
5040900 GAAAACAGAA
** * * * * *
5040910 TTTGAAAAACAGATTTTCAAAATACCT-TGACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAAT
*
5040974 GTGAGTTGATTTT
65 ATGAGTTGATTTT
* * * * *
5040987 TTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAA
1 TTTGAAAAACAGAAATTG--AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAA
5041052 TATGAGTTGATTTT
64 TATGAGTTGATTTT
* * * *
5041066 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAAT
5041130 ATGAGTTGATTTTTT
65 ATGAGTTGA--TTTT
** ** *** * * * *
5041145 TTTGAAAGGCAGAAATTGAAAA-A-CGAAAATTGAAAAT-ACCTCG-GCGTGTGACCTGAGGCTC
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTG----TGACCT-GAG-G-CTCAACTCA--C-C
* * * * *
5041206 AACTCGC-CTCTCGTAATACGAGTTGATT
56 -TCTCGCAATAT-G-AGT-TGA-TT--TT
* * *
5041234 TTTTTG-ACAACAGAAATTGAAATTACCTTAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAA
1 TT--TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAA
5041296 TATGAGTTGATTTT
64 TATGAGTTGATTTT
* * * * **
5041310 TTTAAAAAAACAGAAATTGAAAATACTTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAAT
1 TTT-GAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAAT
**
5041373 ATGAGTTTTTTTT
65 ATGAGTTGATTTT
* * * * * **
5041386 TTTGAAAAATAGAAATTGAAAATACCTTAGCATGT--CTTGAGGCTCAACTTATTTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
5041449 TGAGTTGA--AT
66 TGAGTTGATTTT
* * * **
5041459 TTTG-AAAACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
5041521 TGAGTTGA--AT
66 TGAGTTGATTTT
* * * * **
5041531 TTTG-AAGACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
5041593 TGAGTTGA--AT
66 TGAGTTGATTTT
* * * * **
5041603 TTTG-AAGACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
5041665 TGAGTTGAATTTT
66 TGAGTTG-ATTTT
* * **
5041678 TTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCATAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTG-ACCTGAGGCTCAACTCACCTCTCGCAAT
5041742 ATGAGTTGA--TT
65 ATGAGTTGATTTT
* * * * **
5041753 TTTG-AAAACAGAAATTGGAAATACCTCAACGTGT--CTTAAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
5041815 TGAGTTGA--AT
66 TGAGTTGATTTT
* * ** *
5041825 TTTG-AAAACAGAAATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCATTTCTTGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
5041887 TGAGTTGATTTT
66 TGAGTTGATTTT
5041899 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
5041912 GTAACAACAT
Statistics
Matches: 772, Mismatches: 112, Indels: 85
0.80 0.12 0.09
Matches are distributed among these distances:
71 1 0.00
72 294 0.38
73 6 0.01
74 41 0.05
75 72 0.09
76 94 0.12
77 64 0.08
78 32 0.04
79 94 0.12
80 5 0.01
81 8 0.01
82 8 0.01
83 1 0.00
84 1 0.00
85 8 0.01
86 8 0.01
87 8 0.01
88 3 0.00
89 4 0.01
90 13 0.02
91 3 0.00
92 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (77 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTT
Found at i:5041208 original size:170 final size:167
Alignment explanation
Indices: 5041007--5041312 Score: 452
Period size: 170 Copynumber: 1.8 Consensus size: 167
5040997 ATAAATTGAA
* * *
5041007 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
*
5041072 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
5041136 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
127 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * * *
5041177 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* * * *
5041242 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
5041307 TTTTTT
131 TTTTTT
5041313 AAAAAAACAG
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
166 2 0.02
167 44 0.36
169 18 0.15
170 58 0.48
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (167 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
Found at i:5041282 original size:244 final size:241
Alignment explanation
Indices: 5040786--5041827 Score: 773
Period size: 222 Copynumber: 4.5 Consensus size: 241
5040776 AAATTAAAAA
* *
5040786 GCTCAACTCACCTTTCGCAATATGAGTTGAATTTTTTGAAAAAAACAGAAATTGAAAATAACTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--AAAAACAGAAATTGAAAAT-ACTCA
* * * ** * * *
5040851 GCACTTGAGCCAAGGCTCAACTCACTTTTTACAAGATGAGTTGA----TTTTGGAAAACAGAATT
63 GCGCATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTG-AAACAGAAAT
** * * * *
5040912 TGAAAAAC-AGATTTTCAAAATACCTTGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGT
127 TGAAAAACGA-AAATTGAAAATACCTTGGCATGTGACCTGAGGCTCAACTCACATCTCGCAATAT
* * * * * *
5040976 GAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA
191 GAGTTGATTTTTTTG-AAAACAGAAATTG--AAATTACCTCAGCGTGT--CCTGAG
*
5041032 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA-CTCAGC
* *
5041097 GCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATT
65 GCATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAA--CAGAAATT
* * * * * *
5041162 GAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGA
128 GAAAAACGAAAATTGAAAATACCTTGGCATGTGACCTGAGGCTCAACTCACATCTCGCAATATGA
* *
5041227 GTTGATTTTTTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAG
193 GTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
*
5041276 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAACAGAAATTGAAAATACTTCA-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAAACAGAAATTGAAAATAC-TCAG
* ** *
5041340 -GCATG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT--TTTTTTTTTG--A-A-AAA-T
64 CGCATGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAACAGAAATT
* * * **
5041396 -----A-G-AAATTGAAAATACCTTAGCATGT--CTTGAGGCTCAACTTATTTCTCGCAATATGA
128 GAAAAACGAAAATTGAAAATACCTTGGCATGTGACCTGAGGCTCAACTCACATCTCGCAATATGA
* * *
5041452 GTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAG
193 GTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
** * * * *
5041499 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTG-AAGACAGAAATTGAAATTACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA-CTCAGC
* ** * *
5041561 G--TG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAGACAGAAATT
65 GCATGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAA-ACAGAAATT
* * * **
5041619 -------G-AAA-T-----TACC-T--CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
128 GAAAAACGAAAATTGAAAATACCTTGGC-ATGTGACCTGAGGCTCAACTCACATCTCGCAATATG
* *
5041667 AGTTGAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAG
192 AGTTG-ATTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAG
** * *
5041721 GCTCAACTCACCTCTCATAATATGAGTTGA--TTTTTG-AAAACAGAAATTGGAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATA-CTCAGC
* * * *
5041783 G--TG-TCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
65 GCATGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
5041828 GAAAACAGAA
Statistics
Matches: 681, Mismatches: 79, Indels: 92
0.80 0.09 0.11
Matches are distributed among these distances:
213 1 0.00
214 3 0.00
215 1 0.00
216 38 0.06
217 6 0.01
219 65 0.10
220 23 0.03
221 7 0.01
222 106 0.16
223 67 0.10
225 29 0.04
227 20 0.03
228 1 0.00
229 1 0.00
234 1 0.00
235 3 0.00
236 1 0.00
239 1 0.00
241 10 0.01
242 1 0.00
243 33 0.05
244 101 0.15
245 22 0.03
246 50 0.07
247 3 0.00
248 15 0.02
249 71 0.10
250 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (241 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACTCAGCG
CATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAACAGAAATTGAA
AAACGAAAATTGAAAATACCTTGGCATGTGACCTGAGGCTCAACTCACATCTCGCAATATGAGTT
GATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
Found at i:5041512 original size:72 final size:72
Alignment explanation
Indices: 5041171--5041911 Score: 847
Period size: 72 Copynumber: 10.0 Consensus size: 72
5041161 TGAAAAACGA
* ** * *** * * *
5041171 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--AT
*
5041236 TTTGACAACAG
62 TTTGAAAACAG
* * * ** *
5041247 AAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTT
*
5041312 TAAAAAAACAG
64 T--GAAAACAG
* * * * ***
5041323 AAATTGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTTTTTTTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG--TTGAATTT
*
5041388 TGAAAAATAG
64 TG-AAAACAG
* * * * *
5041398 AAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTTATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
5041463 AAAACAG
66 AAAACAG
5041470 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
*
5041535 AAGACAG
66 AAAACAG
5041542 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
*
5041607 AAGACAG
66 AAAACAG
5041614 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA---TT
5041679 TTGAAAGACAG
63 TTGAAA-ACAG
* * * * ** ** *
5041690 AAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCATAATATGAGTTGATTT
1 AAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
5041754 TTGAAAACAG
63 TTGAAAACAG
*
5041764 AAATTGGAAA-TACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 AAATT-GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
5041828 GAAAACAG
65 GAAAACAG
* ** * *
5041836 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTT
5041901 TGAAAACAG
64 TGAAAACAG
5041910 AA
1 AA
5041912 GTAACAACAT
Statistics
Matches: 591, Mismatches: 57, Indels: 36
0.86 0.08 0.05
Matches are distributed among these distances:
71 5 0.01
72 297 0.50
73 7 0.01
74 70 0.12
75 77 0.13
76 99 0.17
78 35 0.06
79 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (72 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
AAAACAG
Found at i:5041785 original size:222 final size:218
Alignment explanation
Indices: 5041171--5041911 Score: 943
Period size: 222 Copynumber: 3.3 Consensus size: 218
5041161 TGAAAAACGA
* *** * *
5041171 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
* *
5041236 TTTGACAACAGAAATTGAAATTACCTTAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
64 TTTGAAAACAGAAATTGAAATTACCTCAGCAGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
* * * * *
5041300 AGTTGATTTTTTTAAAAAAACAGAAATTGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTT
128 AGTTGA--TTTTT--GAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
*** *
5041365 CTCGCAATATGAGTTTTTTTTTTTGAAAAATAG
189 CTCGCAATATGAG--TTGAATTTTG-AAAACAG
* * * * *
5041398 AAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTTATTTCTCGCAATATGAGTTGA--ATTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
* * **
5041461 TGAAAACAGAAATTGAAATTACCTCAAC-GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TGAAAACAGAAATTGAAATTACCTCAGCAGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAG
* *
5041525 TTGAATTTTGAAGACAGAAATT-GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
130 TTGATTTTTGAAAACAGAAATTGGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
*
5041589 AATATGAGTTGAATTTTGAAGACAG
194 AATATGAGTTGAATTTTGAAAACAG
* * *
5041614 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTT
* * **
5041679 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCATAATAT
65 TTGAAA-ACAGAAATTGAAATTACCTCAGCA-GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
5041744 GAGTTGATTTTTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTC
127 GAGTTGATTTTTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
5041809 GCAATATGAGTTGAATTTTGAAAACAG
192 GCAATATGAGTTGAATTTTGAAAACAG
* * *
5041836 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
5041901 TGAAAACAGAA
66 TGAAAACAGAA
5041912 GTAACAACAT
Statistics
Matches: 453, Mismatches: 51, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
216 58 0.13
217 8 0.02
218 3 0.01
219 61 0.13
220 27 0.06
221 16 0.04
222 162 0.36
223 69 0.15
225 29 0.06
227 20 0.04
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (218 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
TGAAAACAGAAATTGAAATTACCTCAGCAGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
TATGAGTTGAATTTTGAAAACAG
Found at i:5049754 original size:25 final size:24
Alignment explanation
Indices: 5049710--5049760 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
5049700 TTTATGTGAA
*
5049710 TAAAATATTAATTAATTATAATAAT
1 TAAAATATTAATCAATTATAA-AAT
5049735 TAAAATATTAATC-ATATATAAAAT
1 TAAAATATTAATCAAT-TATAAAAT
5049759 TA
1 TA
5049761 TAAAAAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TAAAATATTAATCAATTATAAAAT
Found at i:5050812 original size:3 final size:3
Alignment explanation
Indices: 5050804--5050847 Score: 52
Period size: 3 Copynumber: 13.3 Consensus size: 3
5050794 AAAAGAACCC
5050804 CAT CAT CAT CAT CCAT CAT CCAT CAT CTAT CAT CCAT CAT CAT C
1 CAT CAT CAT CAT -CAT CAT -CAT CAT C-AT CAT -CAT CAT CAT C
5050848 GACGTACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 25 0.68
4 12 0.32
ACGTcount: A:0.30, C:0.39, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:5050822 original size:7 final size:7
Alignment explanation
Indices: 5050803--5050844 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
5050793 AAAAAGAACC
5050803 CCATCAT
1 CCATCAT
5050810 -CATCAT
1 CCATCAT
5050816 CCATCAT
1 CCATCAT
5050823 CCATCAT
1 CCATCAT
*
5050830 CTATCAT
1 CCATCAT
5050837 CCATCAT
1 CCATCAT
5050844 C
1 C
5050845 ATCGACGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (7 bp):
CCATCAT
Found at i:5059129 original size:30 final size:30
Alignment explanation
Indices: 5059039--5059136 Score: 160
Period size: 30 Copynumber: 3.3 Consensus size: 30
5059029 TAGGTACAAG
5059039 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * * *
5059069 AGGTAGTGGAGTAAGTGTAGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
5059099 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
5059129 TGGTGGTG
1 TGGTGGTG
5059137 ACAAAGGCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.18, C:0.05, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:5060051 original size:123 final size:123
Alignment explanation
Indices: 5059908--5060282 Score: 716
Period size: 123 Copynumber: 3.0 Consensus size: 123
5059898 GTTAGTCCAC
* *
5059908 TAGTTCTCAGTTTGATTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTTTA
1 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAA-TTAA
5059973 A-AAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
65 ACAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
5060031 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
1 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
5060096 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
66 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
5060154 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
1 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
5060219 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
66 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
5060277 TAGTTC
1 TAGTTC
5060283 ATGGATCAAT
Statistics
Matches: 249, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
122 4 0.02
123 245 0.98
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (123 bp):
TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
Found at i:5081496 original size:15 final size:15
Alignment explanation
Indices: 5081463--5081535 Score: 92
Period size: 15 Copynumber: 4.9 Consensus size: 15
5081453 TATGATATTG
**
5081463 TATCTTGGATTTCCG
1 TATCTTGGATTTCTT
5081478 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
**
5081493 TATCTAAGATTTCTT
1 TATCTTGGATTTCTT
*
5081508 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
5081523 TATCTTGGTTTTC
1 TATCTTGGATTTC
5081536 ATGTCATATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.15, C:0.16, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:5090017 original size:48 final size:48
Alignment explanation
Indices: 5089975--5090293 Score: 361
Period size: 48 Copynumber: 6.6 Consensus size: 48
5089965 CATATCGGTG
* * *
5089975 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
5090023 GCGATGCCATGTCCTAGACATGGTCTTACATTGGCACATATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
5090071 -CAATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
5090118 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
5090166 CCGATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * * * * * * * **
5090214 TCGATGCCATGTTCTAAATATGGTCTTACACTGGCTCTCATCTCGGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AACA
*
5090263 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAGACATGGTCTTACAC
5090294 GGGATTTCAT
Statistics
Matches: 228, Mismatches: 41, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
47 41 0.18
48 160 0.70
49 27 0.12
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
Found at i:5090098 original size:95 final size:96
Alignment explanation
Indices: 5089978--5090293 Score: 357
Period size: 95 Copynumber: 3.3 Consensus size: 96
5089968 ATCGGTGCCG
* * * *
5089978 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* *
5090043 TGGTCTTACATTGGCACATATATCAACA-CA
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * * *
5090073 ATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCATACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* * *
5090138 TGGTCTTATAGTGGCACACATATCAACACCG
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * * *
5090169 ATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAAC-GTCGATGCCATGTTCTAAAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAG-CGATGCCATGTCCTAAAC
* * * * ** **
5090233 ATGGTCTTACACTGGCTCTCATCTCGGATGCTG
65 ATGGTCTTACACTGGCACACATATC-AACACCA
5090266 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
5090294 GGGATTTCAT
Statistics
Matches: 186, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 82 0.44
96 75 0.40
97 29 0.16
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
TGGTCTTACACTGGCACACATATCAACACCA
Found at i:5090143 original size:143 final size:145
Alignment explanation
Indices: 5089975--5090293 Score: 408
Period size: 143 Copynumber: 2.2 Consensus size: 145
5089965 CATATCGGTG
* * *
5089975 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * *
5090040 ACATGGTCTTACATTGGCACATATATCAAC-ACAATGCCATGTTCCAGAGATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
5090104 CACACATATC-AACA
131 CACACATATCGAACA
* * * *
5090118 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACACCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * * * * *
5090183 ATATGGTCTTACAGTGGTACACATATCAACGTCGATGCCATGTTCTAAATATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
* * * * **
5090248 CTCTCATCTCGGATG
131 CACACATATCGAACA
* *
5090263 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAAACATGGTCTTACAC
5090294 GGGATTTCAT
Statistics
Matches: 148, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 84 0.57
144 36 0.24
145 28 0.19
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (145 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
CACACATATCGAACA
Found at i:5095797 original size:15 final size:15
Alignment explanation
Indices: 5095777--5095817 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
5095767 CAAGAAAACT
5095777 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
5095792 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
5095807 GTATAAAGAAA
1 GAATAAAGAAA
5095818 CCGAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.17, T:0.15
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:5098840 original size:47 final size:47
Alignment explanation
Indices: 5098766--5099119 Score: 369
Period size: 47 Copynumber: 7.6 Consensus size: 47
5098756 CGCATAAGTG
*
5098766 AACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTCA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
5098813 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA
5098856 GTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
5098906 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA
5098949 GTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
5098999 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA
5099042 GTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
*
5099092 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGCTCGGA
5099120 CATTTGCATC
Statistics
Matches: 254, Mismatches: 26, Indels: 54
0.76 0.08 0.16
Matches are distributed among these distances:
42 3 0.01
43 27 0.11
44 3 0.01
46 81 0.32
47 107 0.42
49 3 0.01
50 27 0.11
51 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:5098877 original size:46 final size:46
Alignment explanation
Indices: 5098813--5099164 Score: 377
Period size: 46 Copynumber: 7.6 Consensus size: 46
5098803 ACATCTCTCA
5098813 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
* * * *
5098859 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA---
1 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGTG
5098906 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
* * * *
5098952 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA---
1 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGTG
5098999 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
* * * *
5099045 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA---
1 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGTG
5099092 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
5099138 AACTCGGACTCAACTCAACGAGTTCGG
1 AACTCGGACTCAACTCAACGAGTTCGG
5099165 GTGCCCAAAC
Statistics
Matches: 255, Mismatches: 24, Indels: 54
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.01
43 27 0.11
44 3 0.01
46 108 0.42
47 81 0.32
49 3 0.01
50 27 0.11
51 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTG
Found at i:5098917 original size:93 final size:93
Alignment explanation
Indices: 5098758--5099169 Score: 797
Period size: 93 Copynumber: 4.4 Consensus size: 93
5098748 GTAACCCGCG
*
5098758 CATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
5098823 CAACTCAACGAGTTCGGACATTTGCATC
66 CAACTCAACGAGTTCGGACATTTGCATC
5098851 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
5098916 CAACTCAACGAGTTCGGACATTTGCATC
66 CAACTCAACGAGTTCGGACATTTGCATC
5098944 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
5099009 CAACTCAACGAGTTCGGACATTTGCATC
66 CAACTCAACGAGTTCGGACATTTGCATC
5099037 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
5099102 CAACTCAACGAGTTCGGACATTTGCATC
66 CAACTCAACGAGTTCGGACATTTGCATC
* *
5099130 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
5099170 CAAACATCCT
Statistics
Matches: 316, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 316 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (93 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCGGACT
CAACTCAACGAGTTCGGACATTTGCATC
Found at i:5099184 original size:46 final size:47
Alignment explanation
Indices: 5098760--5099184 Score: 280
Period size: 46 Copynumber: 9.1 Consensus size: 47
5098750 AACCCGCGCA
* * *
5098760 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
5098810 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
5098852 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
5098903 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
5098945 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
5098996 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
5099038 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
5099089 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
5099131 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCCAAACATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
5099179 T-AGTGA
1 TAAGTGA
5099185 CATGTCACTT
Statistics
Matches: 285, Mismatches: 57, Indels: 70
0.69 0.14 0.17
Matches are distributed among these distances:
42 4 0.01
43 28 0.10
45 8 0.03
46 106 0.37
47 101 0.35
48 12 0.04
50 23 0.08
51 3 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
Found at i:5100538 original size:214 final size:214
Alignment explanation
Indices: 5100169--5100597 Score: 777
Period size: 214 Copynumber: 2.0 Consensus size: 214
5100159 TACTCAACTA
* * *
5100169 ACCTTTAAACATCAACTGGGAGCGTAGGTCCGCGAACAATATTTAAGTTTATCAACTAGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
* * *
5100234 AGGCCGTGAGTTGTTTTGGAGTAGTGAGTTTACATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
5100299 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
5100364 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
* *
5100383 ACCTTTAAACATCAACTGGGAGCGTAAGTTCACGAACAATATTGAAGTTTATCAACTGGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
5100448 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
*
5100513 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGTTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
5100578 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
5100597 A
1 A
5100598 GTAGCAAGCT
Statistics
Matches: 206, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 206 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (214 bp):
ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
GGTCTGCGAGCTGTTTCGG
Found at i:5100745 original size:104 final size:104
Alignment explanation
Indices: 5100579--5100901 Score: 448
Period size: 104 Copynumber: 3.1 Consensus size: 104
5100569 GGAAGTGTAG
* ** *
5100579 GTCTGCGAGCTGTTTCGGAGTAGCAAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAAT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
5100644 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
* *
5100683 GTCTGCGAGCTGTTTTGAAGTAGTGAGCTTAACTTAGCTAACTCAAATAAATGAAGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * *
5100748 GTAACTCAGTTAAACTTTAAACATCAACTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*** * * * *
5100787 GTCCATGAGTTGTTTCGAAGTAGTGAGCTTAACTCAACTAACTCAAATAAATTATGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * * * *
5100852 ATAACTTAGCTAACCTTTAAACATCAGTTGGGAGCATAG
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*
5100891 GTCTGTGAGCT
1 GTCTGCGAGCT
5100902 ATGTTGAAAT
Statistics
Matches: 190, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 190 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (104 bp):
GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
Found at i:5103105 original size:30 final size:30
Alignment explanation
Indices: 5103069--5103130 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
5103059 AATGTGAAAA
5103069 GTTATCAAGGTATAAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
*
5103099 GTTATCAAGGTATGAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
5103129 GT
1 GT
5103131 ATTATGATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (30 bp):
GTTATCAAGGTATAAAAATGGGTCATGGAT
Found at i:5112031 original size:48 final size:48
Alignment explanation
Indices: 5111802--5112033 Score: 234
Period size: 48 Copynumber: 4.8 Consensus size: 48
5111792 GTAAAATTCT
* * *
5111802 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGTATTG-GTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TATTGAG-GCC
** * *
5111852 TTTTCCATGTCCCAGACATGGTCTTACACTAGCTTACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* * * *** *
5111900 AATGCCATGTCCCAGACATGGTCTTACA-TTGCCTCTCATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATATTGAGGCC
* * * *
5111948 GATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* *
5111996 GATGTCATGTCCCAGACATGGTCTTAAACTAGCTCACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
5112034 AATAACCCTA
Statistics
Matches: 146, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
47 2 0.01
48 110 0.75
49 3 0.02
50 31 0.21
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
Found at i:5120604 original size:68 final size:67
Alignment explanation
Indices: 5120532--5120681 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
5120522 CATCATGTGT
* * * *
5120532 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
5120594 ATGTAG
62 ATGTAG
** * *
5120600 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
5120665 AG
66 AG
5120667 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
5120682 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:5120637 original size:64 final size:64
Alignment explanation
Indices: 5120556--5120739 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
5120546 AGACATTATG
* *
5120556 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
5120620 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
5120685 AA
63 AA
* * * * *
5120687 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCAAGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
5120740 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:5123106 original size:30 final size:30
Alignment explanation
Indices: 5123061--5123120 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
5123051 ATTTAATACG
* *
5123061 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
5123091 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
5123121 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:5127075 original size:23 final size:23
Alignment explanation
Indices: 5127049--5127097 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
5127039 TCAACCAATC
* *
5127049 CATACCTAAAATAACATCAAATT
1 CATACCCAAAATAACATCAAACT
5127072 CATACCCAAAATAACATCAAACT
1 CATACCCAAAATAACATCAAACT
5127095 CAT
1 CAT
5127098 CAAATGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (23 bp):
CATACCCAAAATAACATCAAACT
Found at i:5133577 original size:48 final size:47
Alignment explanation
Indices: 5133347--5133579 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 47
5133337 GGTAAAATGC
* * ** *
5133347 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTATCGTTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA--TATTGAGGA
** * * * *
5133397 CTTTTCCATGTCCCAGACATGGTCTTCCACTGACTTACATATTGAGG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* ** **
5133444 CTGATGCCATGTCCCAAACATGGTCTTACACTGCCTCTCATA-AAAATA
1 C-GATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* *
5133492 TAGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGA
1 -CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACATATTGAGGA
5133541 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA
5133580 AATAACCCTA
Statistics
Matches: 145, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
47 2 0.01
48 109 0.75
49 4 0.03
50 30 0.21
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGCTCACATATTGAGGA
Found at i:5139552 original size:16 final size:15
Alignment explanation
Indices: 5139527--5139560 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
5139517 GAAGTTGATA
*
5139527 ATAATTAATATATATT
1 ATAATAAATATA-ATT
5139543 ATAATAAATATAATT
1 ATAATAAATATAATT
5139558 ATA
1 ATA
5139561 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:5142473 original size:16 final size:16
Alignment explanation
Indices: 5142452--5142483 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
5142442 TCTTTTCTTT
5142452 GGCACACATTGGACCG
1 GGCACACATTGGACCG
5142468 GGCACACATTGGACCG
1 GGCACACATTGGACCG
5142484 AACTTACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.12
Consensus pattern (16 bp):
GGCACACATTGGACCG
Found at i:5152723 original size:27 final size:27
Alignment explanation
Indices: 5152668--5152723 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
5152658 AGTCTGGGAT
* *
5152668 TTAGGACCCACATTTTGCTTCCTATAA
1 TTAGGACCCACATTCTGCTTCCTAAAA
* *
5152695 TTAGGATCCACATTCTGCTTCTTAAAA
1 TTAGGACCCACATTCTGCTTCCTAAAA
5152722 TT
1 TT
5152724 TCCATATGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (27 bp):
TTAGGACCCACATTCTGCTTCCTAAAA
Found at i:5166793 original size:48 final size:47
Alignment explanation
Indices: 5166714--5166861 Score: 197
Period size: 48 Copynumber: 3.1 Consensus size: 47
5166704 TTGATGTACA
* * *
5166714 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATACGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
5166762 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
** ** *
5166810 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCGAAA-GGCTAATGTGAAATATGTATG
5166858 AGAT
1 AGAT
5166862 GTGTATATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.05
48 84 0.95
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (47 bp):
AGATATATATATGTGGTAAAGCGAAAGGCTAATGTGAAATATGTATG
Found at i:5169171 original size:40 final size:40
Alignment explanation
Indices: 5169021--5169184 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
5169011 TGGATGATAA
* *
5169021 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
5169061 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
5169101 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
5169141 TCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
5169181 CCGG
1 CCGG
5169185 TTCAATCCCG
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 110 0.97
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:5177669 original size:19 final size:19
Alignment explanation
Indices: 5177645--5177690 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
5177635 CCAGTGAAAC
5177645 GGGCGTGTCTTCAGCCTGT
1 GGGCGTGTCTTCAGCCTGT
*
5177664 GGGCGTGTCTTCGGCCTGT
1 GGGCGTGTCTTCAGCCTGT
5177683 GGGCGTGT
1 GGGCGTGT
5177691 GCCCCCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.02, C:0.24, G:0.43, T:0.30
Consensus pattern (19 bp):
GGGCGTGTCTTCAGCCTGT
Found at i:5186189 original size:40 final size:39
Alignment explanation
Indices: 5186091--5186353 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
5186081 TTCTCGTTCA
* * * * *
5186091 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
5186130 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
5186169 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
5186209 GAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * *
5186249 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCAC
** * * * *
5186289 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
5186330 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
5186354 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:5186362 original size:41 final size:41
Alignment explanation
Indices: 5186285--5186362 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
5186275 TTTGTATCTC
* * *
5186285 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
5186326 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
5186363 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:5187648 original size:30 final size:30
Alignment explanation
Indices: 5187612--5187671 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
5187602 CATGGCCGGC
5187612 CACTACTAGTAGGGGAGGGGAATTTGACAT
1 CACTACTAGTAGGGGAGGGGAATTTGACAT
5187642 CACTACTAGTAGGGGAGGGGAATTTGACAT
1 CACTACTAGTAGGGGAGGGGAATTTGACAT
5187672 GCAAGTCCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.23
Consensus pattern (30 bp):
CACTACTAGTAGGGGAGGGGAATTTGACAT
Found at i:5189614 original size:32 final size:32
Alignment explanation
Indices: 5189560--5189668 Score: 105
Period size: 32 Copynumber: 3.4 Consensus size: 32
5189550 AATGACTACT
* *
5189560 AGCCATAAGTA-CAGTAATATGATTGGCACAA
1 AGCCATCAGTAGCAGTAATATGATAGGCACAA
** *
5189591 AGCCATCAGTAGCAGTGTTATGATAGGCACAC
1 AGCCATCAGTAGCAGTAATATGATAGGCACAA
* * **
5189623 AGCC-TACAGTAACGGTAATATGACCGGCACAA
1 AGCCAT-CAGTAGCAGTAATATGATAGGCACAA
*
5189655 AGCCATTAGTAGCA
1 AGCCATCAGTAGCA
5189669 TAACAGCAAA
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
31 11 0.18
32 48 0.80
33 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (32 bp):
AGCCATCAGTAGCAGTAATATGATAGGCACAA
Found at i:5189864 original size:24 final size:23
Alignment explanation
Indices: 5189837--5189966 Score: 95
Period size: 24 Copynumber: 5.4 Consensus size: 23
5189827 CCATGCTCAG
5189837 AATCAGTCATACAATTCACAGACA
1 AATCAGTCATACAA-TCACAGACA
*
5189861 AATCAGTCATACCAATCATAGACA
1 AATCAGTCATA-CAATCACAGACA
*
5189885 AATCAGTCATTTA-AATCACAAACA
1 AATCAGTCA--TACAATCACAGACA
* * *
5189909 AATTAGTCATTTAC-ATCTCGGACA
1 AATCAGTCA--TACAATCACAGACA
* *
5189933 AATCAATCACTTAC-ATCACAGATA
1 AATCAGTCA--TACAATCACAGACA
*
5189957 AATCAATCAT
1 AATCAGTCAT
5189967 TTAACCTCGA
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
22 1 0.01
24 83 0.93
25 3 0.03
26 2 0.02
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (23 bp):
AATCAGTCATACAATCACAGACA
Found at i:5192853 original size:27 final size:27
Alignment explanation
Indices: 5192814--5193080 Score: 421
Period size: 27 Copynumber: 9.9 Consensus size: 27
5192804 TTAATGGGAC
5192814 CGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
*
5192841 TGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
5192868 CGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
*
5192895 TGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
* *
5192922 CAAAATACCTTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
5192949 CGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
5192976 CGAAATACCCTCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
* *
5193003 CGAAATACCCTCGAAAGGTAAAATGA-
1 CGAAATACCCTCGAAGGGTAAAATTAT
*
5193029 CTGAAATACCCTCGAAGGGTAAAATGAT
1 C-GAAATACCCTCGAAGGGTAAAATTAT
* *
5193057 AGAAATACCCT-TATAGGGTAAAAT
1 CGAAATACCCTCGA-AGGGTAAAAT
5193081 AACTGTTATA
Statistics
Matches: 224, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
26 2 0.01
27 222 0.99
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (27 bp):
CGAAATACCCTCGAAGGGTAAAATTAT
Found at i:5193475 original size:28 final size:27
Alignment explanation
Indices: 5193435--5193528 Score: 125
Period size: 28 Copynumber: 3.4 Consensus size: 27
5193425 TTGTACTGAT
* *
5193435 TACTGTATTGGGCTAAGGCCCACATTG
1 TACTATATTGGGCTAAGGCCCACACTG
5193462 CTACTATATTGGGCTAAGGCCCACACTG
1 -TACTATATTGGGCTAAGGCCCACACTG
* *
5193490 TTACTGTAATGGGCTAAGGCCCACACTG
1 -TACTATATTGGGCTAAGGCCCACACTG
5193518 TACTGATATTG
1 TACT-ATATTG
5193529 TATAGGGCAC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.07
28 54 0.93
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (27 bp):
TACTATATTGGGCTAAGGCCCACACTG
Found at i:5206470 original size:33 final size:33
Alignment explanation
Indices: 5206420--5206484 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
5206410 CATGCAAAAT
*
5206420 CAGTCTGGGCCTGAGCCC-TGTACAGTATCAGTA
1 CAGTCTGGGCCTGAGCCCAT-TACAGTAACAGTA
* *
5206453 CAGTGTGGGCCTTAGCCCATTACAGTAACAGT
1 CAGTCTGGGCCTGAGCCCATTACAGTAACAGT
5206485 GTGGGCCTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCCATTACAGTAACAGTA
Found at i:5206487 original size:28 final size:28
Alignment explanation
Indices: 5206448--5206508 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
5206438 TGTACAGTAT
**
5206448 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAAGA
*
5206475 CAGTAACAGTGTGGGCCTTGGCCCAAGA
1 CAGTAACAGTGTGGGCCTTAGCCCAAGA
5206503 CAGTAA
1 CAGTAA
5206509 TGAATACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAAGA
Found at i:5206892 original size:27 final size:27
Alignment explanation
Indices: 5206845--5206909 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
5206835 GGGTATAATA
5206845 GTCATTTTACCCTATAAGGGTAATTCG
1 GTCATTTTACCCTATAAGGGTAATTCG
* *
5206872 GTCATTTTACCCT-TCAGGGGTAATTTG
1 GTCATTTTACCCTAT-AAGGGTAATTCG
5206899 GTCATTTTACC
1 GTCATTTTACC
5206910 ACTCCAGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATAAGGGTAATTCG
Found at i:5206932 original size:28 final size:27
Alignment explanation
Indices: 5206843--5206933 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
5206833 AGGGGTATAA
**
5206843 TAGTCATTTTACCCTATAAGGG-TAATT
1 TAGTCATTTTACCCT-CCAGGGATAATT
** * *
5206870 CGGTCATTTTACCCTTCAGGGGTAATT
1 TAGTCATTTTACCCTCCAGGGATAATT
* *
5206897 TGGTCATTTTACCACTCCAGTGATAATT
1 TAGTCATTTTACC-CTCCAGGGATAATT
5206925 TAGTCATTT
1 TAGTCATTT
5206934 GCTCATGATT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.09
27 30 0.56
28 19 0.35
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (27 bp):
TAGTCATTTTACCCTCCAGGGATAATT
Found at i:5209796 original size:619 final size:619
Alignment explanation
Indices: 5208076--5212875 Score: 7659
Period size: 619 Copynumber: 7.8 Consensus size: 619
5208066 CTCACACCCG
* *
5208076 ACCTACCACAT-GACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATCACA-GACCTA
1 ACCTACCAC-TGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATG-CCTA
* * * *
5208139 AGTGCCAGTGTCTAGATTCATTTAAGG-GAAAAACTAAAAGTTGTACCAAGGCCAAGACTTGAAC
64 TGTGCCAGTGTCCAGATTCATTT-AGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAAC
* * * * * *
5208203 CCAGGCTCCTCAAACACTCACATACACATCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTT
128 CCAGGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTT
* * * * * * *
5208268 GT-GTCT-AAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAA
193 TTGGT-TAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAA
** * * * * * * * *
5208331 GGAAATGTCGGCCTCGAAATTTACCTGGTCAGAAAAGATGAGGGTATTGCTATCGCATCGCCTTT
257 CAAAATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCT
* * * * ** * *
5208396 TCAGGTT-CTTACGTGGCTTCTTCTCAACTGTCATTATGCCAAACCACTTTGACTAATGGAATAG
322 TCGGGTTCCCT-CGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAG
* * * * * * * *
5208460 GTTTCTTCCTCAGTACCATAACCTCACGGTACAAAATTTGCACTAGCTTCTCCTCGATGGTCAGA
386 ATTTCTTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAA
* * **
5208525 TTTGGCCTAA-CTTCAATCTCCTCAACTGGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTA
451 TCTGGCCTAACCTT-AATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTA
** * * * * **
5208589 GCATGGAGATGTGAAACACATCATGAATCTGGTCTAATTTCAGAGACAACTCAAGTTTATAAGCC
515 GCATGGAGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTG
* ** * *
5208654 ATCAGTCCCACAAGTTTCAATACAC-GATAAGGCCCAATGA
580 ATCGGTCTGACACGTTTCAGTACACAG-TAAGGCCCAATGA
* * * * *
5208694 ACCTACTACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTACTAATGTATAAAAGGCCTAAG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
* * * * * *
5208759 TGCCAGTGTTCAGATTCATTTAAGCGAAAAATTAAAAATTGTGACAAGCCCAAGACTTGAACCCA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
* *
5208824 AGCTTCTCAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTT-
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
* * * * *
5208888 GTCAAAACATGCAAAAATTAGAGTCTTTAATTTTGTGGCGTTACAACTCTACCCTCTTTAACAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
*
5208953 ATTTTGACCTCAAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
* * *
5209018 GTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
* * * *
5209083 TCCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTCGAAGGTCAAATCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
** * * **
5209148 TGTAACCTTAATCTCCTCAACTGGTACTATGCGAGTGGGATCAGAGCGATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
* * * *
5209213 AGACCTGAAACACATCATGAGTCAGGTCTAATTTCATAGGCAAATCACGTTTATAGGCGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
* * *
5209278 CTGAAATGTTTCAGTACACGGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
* * * *
5209312 ACCTACCATTGGACCAATAGACTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
*
5209377 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACACA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
*
5209442 GGCTTTTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
*
5209507 GTTAAAACATGCAAAAATTAGAGTCTTTAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
5209572 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
* *
5209637 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACACCAAAGCACTTTGACTAATGGAATAGATTAC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
*
5209702 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCTTTGATGGTCAAATCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
5209767 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
* *
5209832 AGACCTGAATCACATCATGAATCTGGTCTAATTTCATAGGCAAATCAATTTTATAGGTGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
5209897 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
5209931 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
*
5209996 TGCCAATGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
5210061 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
5210126 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
5210191 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
*
5210256 GTTCCCTCGTGGCTTCTATTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
*
5210321 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCTTTGATGGTCAAATCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
5210386 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
5210451 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
5210516 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
5210550 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
* * *
5210615 TGCCAATGTCTAGATTCATTTAGGAGAAAAACTAAAAATTGTGTCAAGGCCAAGACTTGAACCCA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
* *
5210680 AGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTT
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
* *
5210745 GTTAAAACATGCAAAAATTAGAGTCTTTAATTTTGTGGCATTACAACTCTACCCCCTTGAATAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
*
5210810 ATTTTGACCTCGAAATTTTCCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
* *
5210875 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACACGAAAGCACTTTGACTAATGGAATAGATTTC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
*
5210940 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCTTTGATGGTCAAATCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
5211005 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
* *
5211070 AGACCTGAATCACATCATGAATCTGGTCTAATTTCATAGGCAAATCAATTTTATAGGTGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
5211135 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
5211169 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
*
5211234 TGCCAATGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
5211299 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
5211364 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
*
5211429 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCCCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
* *
5211494 GTTCCCTCGTGGCTTCTATTGAACTGGGATTATGCCAAAGCACTTTGACTAATGGAATAGATTTC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
* * *
5211559 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTATCTTCTCTTTGATGGTCAATTCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
*
5211624 CCTAACCTTAATCTCCTCAACTGGTATTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
5211689 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
5211754 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
5211788 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
5211853 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
66 TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
5211918 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
131 GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
5211983 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
196 GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
* *
5212048 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTAAGGGTATTGCTGTCGCATCGCCTCTTCGG
261 ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
*
5212113 GTTCCCTCGTGGCTTCTATTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
326 GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
* *
5212178 TTTCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTGGCTTCTCCTTGATGGTCAAATCTGG
391 TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
* * *
5212243 CCTAACCTTAATCTCCTCAACTTGTACTATGTGAGTGGGATCAGAGCAATAACGCCTTAGCATGG
456 CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
* * * *
5212308 AGACCTGAAACACATCATGAACCTGGTGTAATTTCATAGGCAAATCAAGTTTATGGGCGATCGGT
521 AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
*
5212373 CTAACACGTTTCAGTACACAGTAAGGCCCAATGA
586 CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
*
5212407 ACCTACCACTGGACCAAGAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAATAAAATGCC
1 ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATT-A-ATAT--ATAAAATGCC
5212472 TATGTGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAA
62 TATGTGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAA
* * ** * * * *
5212537 CCCTGGCTTCTCAAACACTCCCACACACACCAAAATCACATAGCCATTAAAACAATCAAGAAATT
127 CCCAGGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATT
* * * * ** * * * *
5212602 TGT-GTCAAAATATGGAAAAATTAGACACTTAAATTTTG-GG-AGCTACAACACTA-CCCCTTTA
192 TTTGGTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCA-TTACAACTCTACCCCCTTGA
* * * * * *
5212663 ACAAAATTTCGACCTCGAAATTTGCCAGGTCAA-AAAAGATGAGGGTATTGCTATCGCATCGCCT
256 ACAAAATTTTGACCTCGAAATTTACCTGGT-AAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCT
* * * * *
5212727 CTTCAGGTTCCCACGTTGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
320 CTTCGGGTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATA
* * * * * * * *
5212792 GATTTCTTCCTCAGTACCTTAACCTCACAGTCCGAAA-TCTGTACTGGCATGTCCTCGAAGGTCA
385 GATTTCTTCCTAAGTACCTTAACCTCACGGTCC-AAACTCTGCACTAGCTTCTCCTTGATGGTCA
* *
5212856 GATCTGGCCTAACCTCAATC
449 AATCTGGCCTAACCTTAATC
5212876 ACATCATGAA
Statistics
Matches: 3948, Mismatches: 219, Indels: 28
0.94 0.05 0.01
Matches are distributed among these distances:
617 3 0.00
618 709 0.18
619 2860 0.72
620 193 0.05
621 20 0.01
622 29 0.01
623 134 0.03
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (619 bp):
ACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAATGCCTATG
TGCCAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCA
GGCTTCTGAAACACTCCCATGCACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTTTG
GTTAAAACATGCAAAAATTAGAGTCTTCAATTTTGTGGCATTACAACTCTACCCCCTTGAACAAA
ATTTTGACCTCGAAATTTACCTGGTAAGAAAAGCTGAGGGTATTGCTGTCGTATCGCCTCTTCGG
GTTCCCTCGTGGCTTCTTTTGAACTGGGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTC
TTCCTAAGTACCTTAACCTCACGGTCCAAACTCTGCACTAGCTTCTCCTTGATGGTCAAATCTGG
CCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTTGGATCAGAGTAATAACGCCTTAGCATGG
AGACCTGAAACACATCATGAATCTGGTCTAATTTCATAGGCAAATCAAGTTTATAGGTGATCGGT
CTGACACGTTTCAGTACACAGTAAGGCCCAATGA
Found at i:5215315 original size:619 final size:618
Alignment explanation
Indices: 5212875--5215899 Score: 4208
Period size: 618 Copynumber: 4.9 Consensus size: 618
5212865 TAACCTCAAT
** * * * *
5212875 CACATCATGAATAAGGTCTAATCTCAGAGGAAACTCAAGTTTATAAGTGATCGGTCCCACATATT
1 CACATCATGAATCTGGTCTAATTTCATAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTT
* * * *
5212940 GT-AGTACACGGTAAGGCCCAATGAACCTACCACAGGACCAGT-GGCTCTTTGTGTCAAAAAATA
66 -TCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACA
* *
5213003 AGTATCAATATATAAAATGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATT
130 AGTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATT
** * * *
5213068 GTGCCATTGCCAAGACTTGAACCCAGGCTTCTTAAACACTCCCATACACACCTAAATCACTTATC
195 GTGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGC
* * *
5213133 CATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGT
260 CATTAAAGCAAACAAGCAATTTTTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGT
** * * * *
5213198 TACAACTCTACCCCCTTTAAGGAAATTTTGGCCTAGAAATTTACCTAGTTAGAAAAA-ATGAGGG
325 TACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCTGGTCA-AAAAAGATGAGGG
* * * * * * *
5213262 TATTGTTGTCGCATCACCCCCTCGGGTTCCCACGTGGATTCTTCTAAACTACT-ATTACGCCAAA
389 TATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACT-GTGATTACGCCAAA
* * * * * * * * *
5213326 GCATTTTGACTAATGGAACATATTT-TACCTCAGTACCTTAACCCCATGGTACAAAATCTCCACT
453 GCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACT
* * * * * *
5213390 AGCTTCTCCTCGAAGGT-AAGATTTGGCCTAACCTCAAT-TCCCCATCTAGTACTATGTGAGTGG
518 GGCTTCTCCTCGAAGGTCAA-ATCTGGCCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGG
* *
5213453 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAA
582 GATCAGAGCAATAACGCCTTAGCATGGAGACCTGAAA
* * * ** * *
5213490 CACATCATGAATCTGGTCTAATTTTAGAGAAAACTCAAGTACATATGCGATCAGTCCCACATGTT
1 CACATCATGAATCTGGTCTAATTTCATAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTT
** *
5213555 TTTGTACACGGTAA-GCCTCGATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACA
66 TCAGTACACGGTAAGGCC-CAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACA
* * *
5213619 AGTAGTAATATATAAAAGGCCTATGTGCCAATGTCAAGATTCATTTAAGAGAAAAACTAAAAATT
130 AGTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATT
* *
5213684 GTTCCAAGGCCAAGACTTGAACCCAGGTTTCTCAAACACTCCCATACACACCCAAATCACTTAGC
195 GTGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGC
* *
5213749 CATTAAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAAATTAGAGATTTAAATTTTGGGGCGT
260 CATTAAAGCAAACAAGCAATTTTTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGT
*
5213814 TACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTA-CTAGGTCAAAAAAGACGAGGG
325 TACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCT-GGTCAAAAAAGATGAGGG
* * *
5213878 TATTACTGTCGCATCGCCTCTTTGGGTTCCCACGTGGCTTCTTTTGAACTGTGATTACGCCAAAG
389 TATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAG
* * *
5213943 CACTTTGACTAAAGGAATAGATTTCTTCTTCGGTACCTTAACCTCACGGTCCAAACTCTGCACTG
454 CACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACTG
* *
5214008 GCTTCTCCTCGAAGGTCAAATCTGGTCTAACCTTAATCTCCTCAACTGGTACTATTTGAGTGGGA
519 GCTTCTCCTCGAAGGTCAAATCTGGCCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGGGA
* * *
5214073 TCAGAGCGATAACGCCTTAGCATGGAGACGTGAAG
584 TCAGAGCAATAACGCCTTAGCATGGAGACCTGAAA
* * *
5214108 CACATCATGAATCTTGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGATCCCACATGTT
1 CACATCATGAATCTGGTCTAATTTCATAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTT
* ** * ** * *
5214173 TCAGTACATGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAA
66 TCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAA
* *
5214238 GTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCGGATTCATTTAAGAGAAAAACTAAAAATTG
131 GTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
* *
5214303 TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCACACACACCCAAATCACTTAGCC
196 TGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
*
5214368 ATTAAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTT
261 ATTAAAGCAAACAAGCAATTTTTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTT
* *
5214433 ACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCAGGTCAAAAAAGACGAGGGTA
326 ACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCTGGTCAAAAAAGATGAGGGTA
* * *
5214498 TTACTGTCGTATCGCCTCTTTGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCA
391 TTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCA
* * * * ** *
5214563 CTTTGAATAATTGAATAGATTTCTTCTTCGGTACCTTAACCTCACGGTCTGAACTCTGTACTGGC
456 CTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACTGGC
*
5214628 TTCTCCTCGAAGGTCAAATCTGGTCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGGGATC
521 TTCTCCTCGAAGGTCAAATCTGGCCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGGGATC
5214693 AGAGCAATAACGCCTTAGCATGGAGACCTGAAA
586 AGAGCAATAACGCCTTAGCATGGAGACCTGAAA
* * * ** *
5214726 CACATCATGAATCAGGTCTAATTTCATAGGCAAA-TCACGTTTATAGGCGATCGGTCTGACACGT
1 CACATCATGAATCTGGTCTAATTTCATAGG-AAACTCAAGTTTATAAGCGATCGGTCCCACATGT
*
5214790 TTCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGACTCTTTGTGTCATAAAACA
65 TTCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACA
* * *
5214855 AGTATTAATATATAAAAGGCCTAAGTGCAAGTGTCCAGATTCATTTAGGAGAAAAACTAAAAATT
130 AGTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATT
** * * * * *
5214920 GTGCCAAGGTAAAGACTTGAACCCAGGCTTCTGAAACACTCCCATGCACACGCAAATCAGTTAGA
195 GTGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGC
* * * * * * *
5214985 AATTAAAACAAACAAGCAATTTTTGGTCAAAACATGCAAAAATTGGAGTCTTCAATTTTGTGGCA
260 CATTAAAGCAAACAAGCAATTTTT-GTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCG
* * * *
5215050 TTACAACTCTACCCCATTGAACAAAATTTTGACCTCAAAATTTACCTGGT-AAGAAAAGTTGAGG
324 TTACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCTGGTCAA-AAAAGATGAGG
* * * *
5215114 GTATTGCTGTCGTATCGCCTCTTCAGGTTGCCACGTGGCTTCTTCTGAACTGGGATTACGCCAAA
388 GTATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAA
* *
5215179 GCACTTTGACTAATGGAATAGATTTCTTCCTAAGTACCTTAACCTCACGGTCCAAACTTTGCACT
453 GCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACT
* * *
5215244 GGCTTCTCCTTGATGGTCAAATCTGGCCTAACCTTAATCTCCTCAACTGGTACAATGTGAGTGGG
518 GGCTTCTCCTCGAAGGTCAAATCTGGCCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGGG
* *
5215309 ATCAGAGTAATAACGCCTTGGCATGGAGACCTGAAA
583 ATCAGAGCAATAACGCCTTAGCATGGAGACCTGAAA
* *
5215345 CACATCATGAATCTGGTCTAATTTCATAGGCAAA-TCAAGTTTATAGGCGATCGGTCTGACACAT
1 CACATCATGAATCTGGTCTAATTTCATAGG-AAACTCAAGTTTATAAGCGATCGGTC--CCACAT
* * *
5215409 -TTT-TGTACACGGTAAGGCCCAATGAACCTACCACTAGACCAAGAGGCTCTTTGTGTCATAAAA
63 GTTTCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAA
* * * *
5215472 CAAGTATTAATATATAAAACGCCTATGTGCCAGTGTCCACATTCATTTAGGAGAAAAACAAAAAA
128 CAAGTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAA
* * * *
5215537 TTGTTCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAATACTTCCATACACACCCAAATCACATA
193 TTGTGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTA
** * * *
5215602 GCCATTAAAATAATCAAGCAATTTGTGTCAAAACATGGAAAAATTAGAGACTTAAATTTTGGGG-
258 GCCATTAAAGCAAACAAGCAATTTTTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGC
* * * *** *
5215666 GCTACAACACTACCCCCTTTAACAAAATTTCGACCGCGAAATTTACCAGGTCAAAAAAGATGAGG
323 GTTACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCTGGTCAAAAAAGATGAGG
* *
5215731 GTATTGCTGTCGCATCGCCTCTTCAGGTTCCCACGTTGCTTCTTCTGAACTGTGATTACGCCAAA
388 GTATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAA
* * *
5215796 GCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCATGGTCCAAAATCTGTACT
453 GCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACT
* * * *
5215861 GGCATGTCCTCGAAGGTCAGATCTGGCCTAACCTCAATC
518 GGCTTCTCCTCGAAGGTCAAATCTGGCCTAACCTTAATC
5215900 ACATCATGAA
Statistics
Matches: 2156, Mismatches: 237, Indels: 32
0.89 0.10 0.01
Matches are distributed among these distances:
614 4 0.00
615 94 0.04
616 318 0.15
617 268 0.12
618 915 0.42
619 551 0.26
620 3 0.00
621 3 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (618 bp):
CACATCATGAATCTGGTCTAATTTCATAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTT
TCAGTACACGGTAAGGCCCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAA
GTATTAATATATAAAAGGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
TGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
ATTAAAGCAAACAAGCAATTTTTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTT
ACAACTCTACCCCCTTTAACAAAATTTTGACCTAAAAATTTACCTGGTCAAAAAAGATGAGGGTA
TTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCA
CTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTCCAAACTCTGCACTGGC
TTCTCCTCGAAGGTCAAATCTGGCCTAACCTTAATCTCCTCAACTGGTACTATGTGAGTGGGATC
AGAGCAATAACGCCTTAGCATGGAGACCTGAAA
Found at i:5218510 original size:618 final size:618
Alignment explanation
Indices: 5216208--5219943 Score: 4946
Period size: 618 Copynumber: 6.1 Consensus size: 618
5216198 TTAGAGACTT
* * * * * *
5216208 AAATTTACCTAGTTAGAAAAAATGAAGGTATTGTTGTCGCATCAGC-CCCTTGGGTTCCCACGTG
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATC-GCATCATCGGGTTCCCACGTG
* *
5216272 GCTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAACAGATTCCTTCCTCAGTAC
65 GCTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGTAC
** *
5216337 CTTAAGCC-CTTGGTACAAAATTTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCA
130 CTTAA-CCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCA
* * * *
5216401 ATCTCCCCATCTAGTACTATGTGAGTGAGATCCGAGCGATAACGCCTTAGCATGGAGACGTGAAA
194 ATCTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAAA
* *
5216466 CACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTACATGCGATCAGTCCCACATGTT
259 CACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTT
* * * *
5216531 TTACTACACGGTAAGCCTCGATGAACCTACCACTGGACCAACAGGCTCTTTGTGTCATAAAACAA
324 TTAGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAA
* *
5216596 GTAGTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTCAAGAGAAAAACTAAAAATTG
389 GTATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
* * *
5216661 TTCCAAGGCGAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
454 TGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCC
* * * * * * *
5216726 ATTAAAACAATCAAGCAATTTGTGTCAAAACATGGAAAAATTAGAGACTTCAATTTTGGGG-GCT
519 ATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTT
* * * *
5216790 ACAACAT-TACCCCCTTTAACAAAATTTTGACCTCG
584 ACAAC-TCTACCCCCTTTAAGAAAATTTCGGCCTAG
* * *
5216825 AAATTTACC-AGGTCA-AAAAGGATGAGGGTATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGT
1 AAATTTACCTA-GTCAGAAAA-AATGAGGGTATTGCTGTCGCATCGCATCATCGGGTTCCCACGT
* * * *
5216888 TGCTTCTTCTGAACT-GTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGT
64 GGCTTCTTCTAAACTACT-ATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGT
* * * * * * *
5216952 ACCTTAACCTCACGGTCCGAAATCTGTACTGGCATGTCCTCGAAGGTCAGATCTGGCCTGACCTC
128 ACCTTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTC
* * * * * *
5217017 AAT-ACCTCAACTAGTACTATGTGAGTGGTATCAAAGAGATAAAGCCTTAGCATGGAGATGTGAA
193 AATCTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAA
** * *
5217081 ACACATCATGAATAAGGTCTAATCTCAGAGGAAACTCAAGTTTATAAGCGATC-GATCCCACACG
258 ACACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAG-TCCCACATG
* *
5217145 TTGTAGTACACGGTAAGGCC-CAATGAACCTACCACAGGACCAAT-GGCTCTTTGTGTCAAAAAA
322 TTTTAGTACACGGTAA-GCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAA
* * *
5217208 CAAGTATTAATATATAAAATGCCCACGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAA
386 CAAGTATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAA
* * * *
5217273 TTGTGCCAATGCCAAGACTTGAACCCAGGCTTCTTAAACACTCCCATACACACCTAAGTCACTTA
451 TTGTGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTA
5217338 TCCATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGC
516 TCCATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGC
* *
5217403 GTTACAACTCTACCCCTTTTAAGGAAATTTCGGCCTAG
581 GTTACAACTCTACCCCCTTTAAGAAAATTTCGGCCTAG
* * * *
5217441 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCAC-CCACTCGGGCTCCCACGTG
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATCGCATCA-TCGGGTTCCCACGTG
* * * * *
5217505 GCTTCTTCTAAACTACTATTCCGCTAAAGCAGTTTGACAAATGGAATAGATTTCTTCCTCAGTAT
65 GCTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGTAC
* * * * *
5217570 CTT-ACCCCATGGTACAAAATCTTCACTAGATTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAA
130 CTTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAA
* * * *
5217634 TCTCCCCATCTAGTACTATATGAGTGGGATCAGAGCGATAATA-CCTCAGCGTGGAGACGTGAAA
195 TCTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAA-AGCCTTAGCATGGAGACGTGAAA
* *
5217698 CACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCCACAGGTT
259 CACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTT
* * *
5217763 TTAGTACACGGTAAGCCTCGATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAACACAA
324 TTAGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAA
*
5217828 GTACTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
389 GTATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
* *
5217893 TTCCAAGGCGAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCC
454 TGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCC
* *
5217958 ATTAAAGCAAACAAGTAATTTGTGTCTAAACATGCAAACAGTAGAGACTTAAATTTTGGGGCGTT
519 ATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTT
** *
5218023 ACAACTCTACCCCCTTTAAGAAAATTTTAGCCTCG
584 ACAACTCTACCCCCTTTAAGAAAATTTCGGCCTAG
* * * * * * *
5218058 AAGTTTACCTAGTCAGAAAAGATGAGGGTATTACTATCGTATCGCATCATCAGGTTCCCACGTGA
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATCGCATCATCGGGTTCCCACGTGG
* ** * * * *
5218123 CTTCTTCTCAACTGTTATTATGCCAAAGCACTTTGACTAATGGAATCA-ATTTCTTCCTCTGTAG
66 CTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAAT-AGATTTCTTCCTCAGTAC
* * * *
5218187 CTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCAAAGCTCAA
130 CTTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAA
* * * * * * * * *
5218252 TGTTCTCAACTTGTACTATCTAAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGC
195 TCTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAAAC
* *
5218317 AGATCATGAATCTGGTCTAATTTCAGAGGAAAGTCAAGTTTATAAGCGATC-GATCCCACATGTT
260 ACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAG-TCCCACATGTT
* ** * ** * * * *
5218381 TCAGTACACGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTATTTATGTCAAAAAACAT
324 TTAGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAA
* * *
5218446 GTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCGGATTCATTTAAGAGAAAAACTAAAAATTG
389 GTATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG
* * * *
5218511 TGCCAATGCCCAGACTTGAACCCAGGCTTCTTAAACACTCCCATACACACCTAAATCACTTATCC
454 TGCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCC
*
5218576 ATTAAAGAAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTT
519 ATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTT
*
5218641 ACAACTCTACCCCCTTTAAGGAAATTTCGGCCTAG
584 ACAACTCTACCCCCTTTAAGAAAATTTCGGCCTAG
* * * *
5218676 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATC-AACCACTCGGGTTCGCACGTG
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATCGCATCA-TCGGGTTCCCACGTG
*
5218740 GCTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACAAATGGAATAGATTTCTTCCTCAGTAC
65 GCTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGTAC
* * *
5218805 CTTAACCCCATGGTACAAAATTTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAA
130 CTTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAA
* *
5218870 TCTCCCCATCTAGTACTATGTGAGTGGGATCAGAGCGATAATGCCTTAGCATGGAGACGTGAAAC
195 TCTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAAAC
*
5218935 ACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCCACATGTTT
260 ACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTT
* * *
5219000 TAGTACACGGTAAGCCTCGACGAACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAG
325 TAGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAAG
* * *
5219065 TAGTAAAATATAAACGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGT
390 TATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGT
* * *
5219130 TCCAAGGCGAAGACTTGAACCCAGGCTTCTCAAACACTCCCACACACACCCAAATCACTTATCCA
455 GCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCCA
*
5219195 TTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACAGTAGAGACTTAAATTTTGGGGCGTTA
520 TTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTTA
**
5219260 CAACTCTACCCCCTTTAAGAAAATTTTAGCC-ACG
585 CAACTCTACCCCCTTTAAGAAAATTTCGGCCTA-G
* * * * * * * *
5219294 AAATTTACATAGTCAGAAAAGATAAGGGTATTACTATCGTATCGCATCATCAGGTTCCCACGTGA
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATCGCATCATCGGGTTCCCACGTGG
* ** * * *
5219359 CTTCTTCTTAACTGTTATTACGCCAAAGCATTTTGACTAATGGAATCGATTTCTTCCTCTGTAGC
66 CTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGTACC
* * * *
5219424 TTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCAAAGCTCAAT
131 TTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAAT
* * * * * * * * * *
5219489 GTTCTCAACTTGTACTATTTTAGTGGGATGAGAGCGATAACGCCTTAGCATGGAGACATGAAGCA
196 CTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAAACA
** * * *
5219554 CATCATGAATCTGGTGGAATTTCAGAAGAAACTTAAGTTTATAAGAGATC-GATCCCACATGTTT
261 CATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAG-TCCCACATGTTT
* ** * ** * *
5219618 CAGTACACGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGCGTCAAAAAACAAG
325 TAGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAAG
* * * * *
5219683 AATTAATATATAAAAGGCCGAAGTGCCAGTGTCCGGATTCATTTAAGAGAAAAACTAAAAATTGT
390 TATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGT
* * * * * ** ** * *
5219748 GCAAAGGCCAAGACTTGAACCTA-GC--C-C--AC-GTCGC-TTC-TTCTGAACTGTGA-TTA-C
455 GCCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAA--ATCACTTATC
*
5219802 GC--CAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCG
518 -CATTAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCG
** * *
5219865 TT-CAACTCTACCCTATTTAAGGACATTTCGGCCTAG
582 TTACAACTCTACCCCCTTTAAGAAAATTTCGGCCTAG
*
5219901 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATC
1 AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATC
5219944 ACCCACTTGG
Statistics
Matches: 2716, Mismatches: 370, Indels: 76
0.86 0.12 0.02
Matches are distributed among these distances:
607 62 0.02
608 62 0.02
609 4 0.00
610 5 0.00
611 5 0.00
612 2 0.00
614 1 0.00
615 251 0.09
616 431 0.16
617 517 0.19
618 1372 0.51
619 4 0.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (618 bp):
AAATTTACCTAGTCAGAAAAAATGAGGGTATTGCTGTCGCATCGCATCATCGGGTTCCCACGTGG
CTTCTTCTAAACTACTATTACGCCAAAGCATTTTGACTAATGGAATAGATTTCTTCCTCAGTACC
TTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAAT
CTCCCCAACTAGTACTATGTGAGTGGGATCAGAGCGATAAAGCCTTAGCATGGAGACGTGAAACA
CATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTTT
AGTACACGGTAAGCCTCAATGAACCTACCACTGGACCAATAGGCTCTTTGTGTCAAAAAACAAGT
ATTAATATATAAAAGGCCTACGTGCCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTG
CCAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCCAT
TAAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTTAC
AACTCTACCCCCTTTAAGAAAATTTCGGCCTAG
Found at i:5220061 original size:134 final size:134
Alignment explanation
Indices: 5219821--5220090 Score: 513
Period size: 134 Copynumber: 2.0 Consensus size: 134
5219811 AACAAGCAAT
* *
5219821 TTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTTCAACTCTACCCTATTTAAG
1 TTGTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTCAACTCTACCCTATTTAAG
5219886 GACATTTCGGCCTAGAAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCACCCACT
66 GACATTTCGGCCTAGAAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCACCCACT
5219951 TGGG
131 TGGG
*
5219955 TTGTGTCAAAACATGGAAAAATTAGAGACTTAAATTTTGGGGCGTTCAACTCTACCCTATTTAAG
1 TTGTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTCAACTCTACCCTATTTAAG
5220020 GACATTTCGGCCTAGAAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCACCCACT
66 GACATTTCGGCCTAGAAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCACCCACT
5220085 TGGG
131 TGGG
5220089 TT
1 TT
5220091 AAACTAAAAA
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 133 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (134 bp):
TTGTGTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTCAACTCTACCCTATTTAAG
GACATTTCGGCCTAGAAATTTACCTAGTCAGAAAAAATGAGGGTATTGTTGTCGCATCACCCACT
TGGG
Found at i:5221347 original size:617 final size:617
Alignment explanation
Indices: 5220162--5229926 Score: 11005
Period size: 617 Copynumber: 15.7 Consensus size: 617
5220152 TGATTACGCC
* * *
5220162 AAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTT-CA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAA-ATTAGAGACTTAAATTTTGGGGCGTTACA
** ** * * * * *
5220226 ACTCTACCCTATTTAAGGACATTTCGGCCT-AGAAATTTACCTA-GTCAGAAAAAATGAGGGTAT
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCA-AAATTTACC-AGGTCAGAAAAGACGAGGGTAT
** * * * *
5220289 TGTTGTCGCATCACCCACTT-GGGTTCCCACGTGGCTTCTTCTAAACTACT-ATTACGCCAAAGC
128 TACTGTCGCATC-GCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACT-GTGATTACGCCAAAGC
* * * * * * * * *
5220352 ATTTTGACAAATGGAATAGATTTCTTCCTCAGTACCTTAACCCCATGGTACAAAGTTTGCACTGG
191 ACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGG
* * * * * * * *
5220417 CTTCTCCTCGAAGGTAAGATCTGGCCTAACCTCAATCTCCCCATCTAGTACTATGTGAGTGGGAT
256 CTTCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGAT
* * *
5220482 CAGAGCGAT--ATGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTACAGAGG
321 CAGAGCGATAAAT-CCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGG
* * * * * ** *
5220545 AAACTCAAGTTTATATGCGATCAGTCCCACATGTTTTAGTACACGGTAAGCCTCGATGAACCTAC
385 AAACTCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTAC
* ** * * * * *
5220610 CACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTAGTAATATATAAAAGGCCTACGTGCCAA
450 CAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAG
* * * *
5220675 TGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTTCCAAGGCGAAGACTTGAACCCAGGCTTC
515 TGTCCGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTC
*
5220740 TCAAACACTCCCATACACACCCAAATCACTTATCCATT
580 TCAAACACTCCCATACACACCCAAATCACTTAGCCATT
* * *
5220778 AAAGCAAACAAGCAATTTGTGTCTAAACATGCAAACATTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAA-ATTAGAGACTTAAATTTTGGGGCGTTACA
* * * *
5220843 ACTCTA-CCCCTTTAAGAAAATTTT-AGCCTCGAAATTTACCTA-GTTAGAAAAGATGAGGGTAT
65 ACTCTACCCCCTTTAACAAAATTTTGA-CCTCAAAATTTACC-AGGTCAGAAAAGACGAGGGTAT
* * * * * * * *
5220905 TACTATCGTATCGCATCATCAGGTTCCCACGTGACTTCTTCTCAACTGTTATTACGCCAAAGCAC
128 TACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCAC
* * * * *
5220970 TTTGACTAATGTAATCGATTTCTTCCTCTGTAGCTTAACCTCACGGTCCAAAATCTGCACTGGCT
193 TTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCT
* * * *
5221035 TCTCCTCGAAGGTCAGATCTGGCCAAAGCTCAATGTTCTCAACTTGTACTATTTGAGTGGGATGA
258 TCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCA
** *
5221100 GAGCGATAACGCCTTAGCATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAA
323 GAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAA
* * * *
5221165 CTTAAGTTTATAAGAGATCGATCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAG
388 CTCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAG
5221230 TGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGT
453 TGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGT
*
5221295 CCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCA
518 CCGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCA
*
5221360 AACACTCCCATACACACCCAAA-CGGCTTAGCCATT
583 AACACTCCCATACACACCCAAATC-ACTTAGCCATT
*
5221395 AAAGCAAACAAGCAATTTTTTTCAAAACATGCTGAAATTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGC-AAAATTAGAGACTTAAATTTTGGGGCGTTACA
* *
5221460 ACTCTACCCCCTTGAACAAAATCTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* * * *
5221525 CGGTCGCATCGCCTTTTCGGGTTCCCACGTGGCTTCTTCTGAACTATGATTATGCCAAAGCACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* *
5221590 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTTCACTGGCTTG
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
*
5221655 TCCTCGAAGGTCAGATCTGGCCAAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
*
5221720 GCGATAAATCCTTAGTATGGAGACGTGAAGCAGATCATGAATCTGGTCTAATTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
*
5221785 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAATG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
* * *
5221850 GAAAAATAAGCTCATTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTCCCAATGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
* * *
5221915 AGATTCATTTAAGAG-AAAGCTAAAAATTGTGCAAAGGCCAAGACTTGAACCTAGGCTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
*
5221979 CACTCTCATACACACCCAAATCACTTAGCCATT
585 CACTCCCATACACACCCAAATCACTTAGCCATT
* * * * * *
5222012 AAAGCAAACAAGTATTTTTTTTTCAAAACATACAAAAATTAGAGACTTAAATTATAGGGCATTAC
1 AAAGCAAACAAGCA-ATTTTTTTCAAAACATGC-AAAATTAGAGACTTAAATTTTGGGGCGTTAC
*
5222077 AACTCTACCCCATTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATT
64 AACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGT---------C-A--G-A--
*
5222142 ACTACTCAGAATAGCCGAGGGTATTACTGTCGCATCGCCTCTTTGGGTTCCCACGTGGCTTCTTC
114 A--A---AG---A--CGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTC
* **
5222207 TGAACTGTGATTACGCCAAAGTACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACCCAACCT
169 TGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCT
*
5222272 CACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTAGCCCAAGCTCAATCTTCTCA
234 CACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCA
* * *
5222337 ACTTGTACTATCTGAGTGGGATCTGAGCGATAAGTCCTTAGTATGGAGACATGAAGCACATCATG
299 ACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATG
* *
5222402 AATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTTCTACATGTTTCAGTACAC
364 AATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACAC
5222467 GGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAG--CTTTGTGTCAAAAAACAAGTATTAATA
429 GGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATA
* * *
5222530 TATAAAAGACCTAAGTGCCAGTGTCCGGATTCATTTAAGAGAAAAACTAAAAATTGTGTACAGGC
494 TATAAAAGGCCTAAGTGCCAGTGTCCGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGC
* * ** *
5222595 CAAGACTTGAACTCAGGCTTCCCAAGGACTCCCATACACACCCTAATCACTTAGCCATT
559 CAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATT
*
5222654 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAGAAATTAGAGACTTAAATTTTAGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
* *
5222719 ACTCTACCACATTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* ** *
5222784 CTGTCGCATCGCCTGTTCGGGTTCCCACGTATCTTCTTCTGAACTGTGATTACGCCAAAACACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
5222849 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
*
5222914 ACCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
* * *
5222979 GTGATAAATCCTTAGTATGGAGACGTGAGGCTCATCATGAATCTGGTCTAATTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
* *
5223044 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACATGGTAAGGTTCAATGAACCGACCAGTG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
5223109 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
* * *** *** * *
5223174 -GA-CCA-GT--G-GAAAAA-TAAGCTCCTTGTGTCAAAAAACAAGTA-TT-AA--TA----TAT
520 GGATTCATTTAAGAGAAAAACTAA--AAATTGTG-CAAAGGCCAAG-ACTTGAACCCAGGCTTCT
** *** ** ** **
5223224 -AAA-A-GGCC-TA-AGTGCCAGTGTC-CAGATTCATTT
581 CAAACACTCCCATACACACCCA-AATCACTTAGCCA-TT
** * * * * * *** * ***
5223257 AAGAG-AAA-AA-CTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAG-GCATCTCAAACACT--
1 AA-AGCAAACAAGC--AATTTTTTTCAAA--ACATG-C--AAAATTAGAG-A-CTTAAATTTTGG
* ** * ** * **
5223316 -CCCATACACACCCAAATCACTTAGACCTTGAAGCAAACAAGCATTTT--TTTC-AAA---A-CA
56 GGCGTTACA-ACTC---T-AC---CCCCTTTAA-C--A-AA--ATTTTGACCTCAAAATTTACCA
* ** * ** * ** ** * * * * ***
5223373 TG-CAGAAATTAGA-GA-CTTAAATT-TTGGGGCGTTACAAC-TC---TACCCCCTTGAACAAAA
107 GGTCAGAAA--AGACGAGGGT--ATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTG-GC-TTC
* * *** * ** ** * *** * ** *
5223430 TTTTGACCTCAAAATTTACCAGGTCAGAAAAG-A-TGAGGGTATTGCTGTCGCATCGCCTCTTC-
166 TTCTGAACT-GTGA-TTA-C--G-C--CAAAGCACTTTGACTAATGGAATAG-ATTTCTTCTTCA
** **** * * * * * * * * *
5223492 G--GGTT--CC-CAC-GTCGCTTCTTCTGAACTGTGATTATGC-C-AAAG-CA-CT-TTGACTAA
222 GTAACTTAACCTCACGGTC-CAAAATCTGCACTG-GCTTCTCCTCGAAGGTCAGATCTGGCCCAA
* ** * * * **** * * *
5223546 TGGAAT-AGAT-TT-T-TTCTT-CAGTAACT---TAACCTCACAGTCTA-AAAT-C-T-GCACTG
285 --G-CTCA-ATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAG-CGATAAATCCTTAGTA-TG
*** * * * * ** **** * * **
5223599 GCTTTTCCTCGAAG---GTCA-G-ATCTGGCCCAAGCTCA-A-TCTTCTCAACTTGTACTATCTG
344 G--AGACGT-GAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAA-GT-TAATAAGTG
* ** * * *
5223657 AGTGGGATCAGAGCGATAAATCCTT-AGTATGGA-GACGTGAAGCAGATC-ATGAATCTGGTCTA
404 A-TCGG-TCCCA-C-AT--GT--TTCAGTA--CACG--GT-AAG--GTTCAATGAA-C----CT-
* * * * * **** * * * ***
5223719 ATTTCAGAGG-AAAGTCAAG-T-TTATAAGCGATTGATCCCACATGT-TTCAGTACACGGTAAGG
448 A--CCAGTGGAAAAAT-AAGCTCTT-T--GTG--TCAAAAAACAAGTATT-AATATA-TAAAAGG
* * * ***** * *
5223780 TTCAATGAACCTACCAGTGGAAAAATAAGCTC-TTTATGTCA-AAAAAC-AAGTATTAATATAT-
503 --C-CT-AA-GTGCCAGTGTCCGGAT----TCATTTAAG--AGAAAAACTAA--A--AAT-TGTG
* * ** ** * * * **** * * *
5223841 AAAAGGCCTAAGTGCCAGAGTCC-GGATTCATTTAAGAGAAAAAC-TAGAAATTGTGCC-AATGC
552 CAAAGGCC-AAG-ACTTGAACCCAGGCTTC--TCAA-ACACTCCCATACACA----CCCAAAT--
*
5223903 CAAGACTTGAACCCAGGCTTCTT
606 C---ACTT--AGCCA------TT
* * * * * *
5223926 AAA-CACTCCCATACACACCTAAATCACTTATCCATTAA-A-GC-AAA-CA-AG-C---AATTTT
1 AAAGCA-----A-ACA-AGC--AAT--TTTTTTCA-AAACATGCAAAATTAGAGACTTAAATTTT
* * ** * * * * * * * * **
5223981 -----TTTCAAAACATGC-A-AACATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCT
54 GGGGCGTT-ACAAC-T-CTACCCCCTT-TA-AC-AAAATTTT--GACCTCA-AAATTTA--CCAG
* * * * *** * * ** * **
5224039 TTAACAAAATTTTGACCTCAAAAT-TTACCAGGTCAGAAAAG---ATGAGGGTATTACTATCGCA
108 GTCAGAAAA----GA-C-GAGGGTATTA-C-TGTC-GCATCGCCTCTTCGGG--TT-C---C-CA
***
5224100 TCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAAT
157 -CGTGGCTTC------------------TTCTGAACTGTGATTACGCCAAAGCACTTTGACTAAT
* *
5224165 GGAATAGATTTCTTCTTCAGTAACCTAACCTCACGGTCCAAAATCTGCACTGGCTTCACCTCGAA
203 GGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAA
* *
5224230 GGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGAACTATCTGAGTGGGATCAGAGCGATAAG
268 GGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAA
*
5224295 TCCTTAGTATGGAGACGTGAAGCACATAATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAA
333 TCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAA
* * *
5224360 TAAGTGATCGGTTCCACATGTTTTAGTACACGGTAAGATTCAATGAACCTACCAGTGGAAAAATA
398 TAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTGGAAAAATA
* **
5224425 AG--CTTTGTGTCAAAAAA-AAGTATTAATATATAAAAGACCTAAGTGCCAGTGTTTGGATTCAT
463 AGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCGGATTCAT
* * * *
5224487 TTAAGAGAAAAACTAAAAATTGTGCACAGGCCAAGACTTGAACTCATGCTTCTCAAACACTTCCA
528 TTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCA
*
5224552 TACACACCCAAATAACTTAGCCATT
593 TACACACCCAAATCACTTAGCCATT
*
5224577 AAAGCAAACAAGCAATTTTTTT-AAAACATGCAGAAATTAGAGACTTAAATTTTGAGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
* * * *
5224641 ACTTTACCCCATTTAGCAAAATTTTGACCTTAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* *
5224706 CTGTCGCATCGCCTCTTCAGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAACACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* *
5224771 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACTTCACGGTCCAAAATCTGCACTCGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
* *
5224836 TCCTCGAACGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATATGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
* * *
5224901 GCGATAAATCCTTAGTATGGAGACATGAAGCACATCATGAATCAGGTCTAATTTTAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
* **
5224966 CAAGTTAATAAGTGATCGGTCCTACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAACG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
*
5225031 GAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
* *
5225096 AGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAAGCTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
5225161 CACTCCCATACACACCCAAATCACTTAGACC-TT
585 CACTCCCATACACACCCAAATCACTTAG-CCATT
* * *
5225194 GAAGCAAACAAGCATTTTTTTTCAAAACATGCAAACATTAGAGACATAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAA-ATTAGAGACTTAAATTTTGGGGCGTTACA
*
5225259 ACTCTACCCCCTTTAACAAAATTTTGACTTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* ** * *
5225324 CTATCGCATCAACTCTTCGGGTTGCCACGTCGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* *
5225389 TGACTAATGGAATAGATTTCTTCTTCAGTAACCTAACCTCACGGTCCAAAATCTGCACTAGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
*
5225454 ACCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
* *
5225519 GCGATAAATCCTTAGTATGGAGACGTGAAGCTCATCATGAATCTGGTCTAGTTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
* *
5225584 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACATGGTAAGGTTTAATGAACCTACCAGTG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
*
5225649 GAAAAATAAGCTCTTTGTGTCAAAAATCAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
* *
5225714 GGATCCATTTAAAAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
* *
5225779 CACTCTCATACACACCCGAATCACTTAGCCATT
585 CACTCCCATACACACCCAAATCACTTAGCCATT
* *
5225812 GAAGCAAACAAG-AATTTTTTTCAAAACATGC-AAATATAGAGACATAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAAT-TAGAGACTTAAATTTTGGGGCGTTACA
*
5225875 ACTCTACCCCCTTTAACAAAGTTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* * *
5225940 TTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTTTGAACTGTGATTACGCGAAAGCACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* * * * *
5226005 TCACTAATGGAATACACTTCTTCTTCAGTAACCTAACCTCACGGTCCAAAATCTGCACTAGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
* * *
5226070 TCCTCGAAGGTCAGATCTGACCCAAGCTCAACCTTCTCAACTTGTACTATCTGAGTAGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
* * * *
5226135 GCGATAAATCCTAACTATAGAGACGTGAAGCACATCATGAATCTGGTCAAATTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
5226200 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
5226265 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
** *
5226330 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGTTAAGACTTGAATCCAGGCTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
*
5226395 CACTCCCATACACACCCGAATCACTTAGCCATT
585 CACTCCCATACACACCCAAATCACTTAGCCATT
* * *
5226428 GAAGCAAACAAGCATTTTTTTGTCAAAACATGCAAACA-TAGAGACTTAAATTTTGGGGTGTTAC
1 AAAGCAAACAAGCAATTTTTT-TCAAAACATGCAAA-ATTAGAGACTTAAATTTTGGGGCGTTAC
*
5226492 AACTCTACCCCCTTTAACAAAATCTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATT
64 AACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATT
* *
5226557 ACTATCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACA
129 ACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACT
* * *
5226622 TTGACTAATGGAATAGATTTCTTCTTCAGTAACCTAACCTCACGGTCAAAAATCTGCATTGGCTT
194 TTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTT
* *
5226687 CTCCTCGAAGGTCAGATCTGACCCAAGCTCAACCTTCTCAACTTGTACTATCTGAGTGGGATCAG
259 CTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAG
* * *
5226752 AGCGATAAATCCTTACTATGGAGACGTGAAGCACATCAGGAATCTAGTCTAATTTCAGAGGAAAC
324 AGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAAC
**
5226817 TCGGGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGT
389 TCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGT
5226882 GGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTC
454 GGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTC
* * *
5226947 CGGATTCATTTAAGAGAAAAACGAAAAATTGTGCAAAGGCCAAGACTTAAACCCAGACTTCTCAA
519 CGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAA
* *
5227012 ACACTCCCATACACACCCAACTCACTTATCCATT
584 ACACTCCCATACACACCCAAATCACTTAGCCATT
*
5227046 AAAGCAAACAAGC-ATTTTTTTCAAAACATGCAGAAATTAGAGACTTAAATTTTGGGGCATTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
5227110 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGG-CTAGAAAAGACGAGGGTATT
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTC-AGAAAAGACGAGGGTATT
* * * *
5227174 ACTGTCGCATCGCCTCTTCGGGTCCCCACATGGCTTCTTCTGAACTGTGATCACGCCAAAGGACT
129 ACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACT
* * * *
5227239 TTGACTAATGGAATAGATTTCTTCTTCTGTAACCTAACCTCACGGTCCAAAATTTGCACTGACTT
194 TTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTT
* *
5227304 CTCCTCGAAAGTCAGATCTAGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAG
259 CTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAG
* * * *
5227369 AGCGATAAATCCTTAATATGGAGACGTGAAGCACATCCTGAATATGGTCTAATTTAAGAGGAAAC
324 AGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAAC
5227434 TCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGT
389 TCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGT
5227499 GGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTC
454 GGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTC
*
5227564 CGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGACTTCTCAA
519 CGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAA
5227629 ACACTCCCATACACACCCAAATCACTTAGCCATT
584 ACACTCCCATACACACCCAAATCACTTAGCCATT
5227663 AAAGCAAACAAGC-ATTTTTTTCAAAACATGCAGAAATTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
5227727 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
* * *
5227792 CTGTCGCATCGCCTCTTCGGGTTCCCACATGGCTTCTTCTGAACTGTGATCACGCCAAAGGACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* * *
5227857 TGACTAATGGAATAGATTTCTTCTTCTGTAACCTAACCTCACGGTCCAAAATTTGCACTGGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
** * *
5227922 TTTTCGAAAGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTCTACTATCTGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
5227987 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
* * * * * * ** * * *
5228052 CAAGTTTATATGCGATCAGTCCCACAGGTTTTAGTACACGGTAAGCCTCGACGAACCTACCACTG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
** * * * * * *
5228117 GACCAATAGGCTCTTTATGTCATAAAACAAGTAGTAATATATAAAAGGCCTACGTGCCAATGTCC
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
* * * * * *
5228182 AGATTCATTTAATAGAAAAACTAAAAATTATTCCAAGGCGAAGACTTGAACCCAGGCTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
*
5228247 CACTCCCATACACACCCAAATCACTTATCCATT
585 CACTCCCATACACACCCAAATCACTTAGCCATT
* * * * *
5228280 AAAGCAAACAAGAAATTTGTGTCTAAACATGCAAACAGTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAA-ATTAGAGACTTAAATTTTGGGGCGTTACA
** * * * * **
5228345 ACTCTACCCGTTTTAAGAAAAATTT-AGCCACGAAATTTACCTA-GTCAGAAAAGATAAGGGTAT
65 ACTCTACCCCCTTTAACAAAATTTTGA-CCTCAAAATTTACC-AGGTCAGAAAAGACGAGGGTAT
* * * * * * * * * *
5228408 TACTATCGTATCGCATCATCAGGTTCCCACGTGACTTCTTCTTAATTGTTATTACGCCAAAGCAT
128 TACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCAC
* * * * * *
5228473 TTTGACTAATGGAATCGATTTCTTCCTCTGTAGCTTAACCTCACGGTCTAAAATCAGCACTGGCT
193 TTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCT
* * * *
5228538 TCTCCTCGAAGGTCAGATCTGGCCAAAGCTCAATGTTCTCAACTTGTACTATTTGAGTGGGATGA
258 TCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCA
** * *
5228603 GAGCGATAACGCCTTAGCATGGAGACGTGAAGCACATCATGAATCTGGTGTAATTTCAGAGGAAA
323 GAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAA
5228668 CTCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAG
388 CTCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAG
*
5228733 TGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCTAGTGT
453 TGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGT
*
5228798 CCGGATTCATTTAAGAGAAAAACTAAAAATTGTGTAAAGGCCAAGACTTGAACCCAGGCTTCTCA
518 CCGGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCA
*
5228863 AACACTCCCATACACACCCAAATCACTTTGCCATT
583 AACACTCCCATACACACCCAAATCACTTAGCCATT
5228898 AAAGCAAACAAGC-ATTTTTTTCAAAACATGCAGAAATTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
5228962 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
65 ACTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTA
*
5229027 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTATGATTACGCCAAAGCACTT
130 CTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTT
* ** *
5229092 TGACCAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCGGGGTCCAAAATCTGTACTGGCTTC
195 TGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTC
* *
5229157 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAACCTTCTCAACTTTTACTATCTGAGTGGGATCAGA
260 TCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGA
* * *
5229222 GGGATAACTCCTTAGTATGGAGACGTGGAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
325 GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
*
5229287 CAAGTTAATAACTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
390 CAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
* *
5229352 GAAAATTAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCT
455 GAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCC
*
5229417 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGACTTCTCAAA
520 GGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAA
5229482 CACTCCCATACACACCCAAATCACTTAGCCATT
585 CACTCCCATACACACCCAAATCACTTAGCCATT
* *
5229515 GAAGCAAACAAGC-ATTTTTTTCAAAACATACAGAAATTAGAGACTTAAATTTTGGGGCGTTACA
1 AAAGCAAACAAGCAATTTTTTTCAAAACATGCA-AAATTAGAGACTTAAATTTTGGGGCGTTACA
* * * *
5229579 ACTCTACCCCTTTTAAGAAAATTTT-AGCCTCGAAATTTACCTA-GTCAGAAAAGATGAGGGTAT
65 ACTCTACCCCCTTTAACAAAATTTTGA-CCTCAAAATTTACC-AGGTCAGAAAAGACGAGGGTAT
* ** * * * * *
5229642 TACTGTCGCATCGCATCACCAGGTTTCCACGTGACTTCTTCTCAACTGTTATTACGCCAAAGCAC
128 TACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCAC
* * * *
5229707 TTTGACTAATGGAATAGATTTCTTCCTT-AGTAACTTAACCTCACGGTACAACATCTACATTGGC
193 TTTGACTAATGGAATAGATTTCTT-CTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGC
* * * * * *
5229771 TTCTCCTCTAAGGTCAGATCTGGCCTAATCTCAATCTCCTCAACTGGTACTATGTGAGTGGGATC
257 TTCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATC
** *
5229836 AGAGCGATAACGCCTTAGCATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAA
322 AGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAA
* * *
5229901 ACTCAAGTTTATAAGCGATCAGTCCC
387 ACTCAAGTTAATAAGTGATCGGTCCC
5229927 GAACGTCCCA
Statistics
Matches: 7833, Mismatches: 962, Indels: 707
0.82 0.10 0.07
Matches are distributed among these distances:
597 5 0.00
598 2 0.00
599 19 0.00
600 6 0.00
601 11 0.00
602 11 0.00
603 34 0.00
604 8 0.00
605 10 0.00
606 16 0.00
607 17 0.00
608 15 0.00
609 10 0.00
610 21 0.00
611 32 0.00
612 30 0.00
613 22 0.00
614 291 0.04
615 9 0.00
616 1206 0.15
617 2669 0.34
618 2250 0.29
619 17 0.00
620 3 0.00
621 4 0.00
622 11 0.00
623 4 0.00
624 1 0.00
625 1 0.00
626 2 0.00
627 3 0.00
628 9 0.00
629 2 0.00
630 1 0.00
631 2 0.00
632 7 0.00
633 3 0.00
634 3 0.00
635 1 0.00
636 1 0.00
637 4 0.00
638 15 0.00
639 9 0.00
640 15 0.00
641 162 0.02
642 86 0.01
643 333 0.04
644 1 0.00
645 12 0.00
646 4 0.00
647 7 0.00
648 5 0.00
649 7 0.00
650 9 0.00
651 7 0.00
652 6 0.00
653 16 0.00
654 3 0.00
655 2 0.00
656 5 0.00
657 8 0.00
658 5 0.00
659 6 0.00
660 1 0.00
662 2 0.00
663 5 0.00
664 9 0.00
665 6 0.00
666 7 0.00
667 7 0.00
668 9 0.00
669 15 0.00
670 9 0.00
671 4 0.00
672 6 0.00
673 10 0.00
674 8 0.00
675 2 0.00
676 3 0.00
677 16 0.00
678 2 0.00
679 6 0.00
680 3 0.00
681 2 0.00
682 4 0.00
683 7 0.00
684 5 0.00
686 2 0.00
688 1 0.00
689 10 0.00
690 8 0.00
691 10 0.00
692 12 0.00
693 1 0.00
694 1 0.00
695 1 0.00
696 12 0.00
697 19 0.00
698 19 0.00
699 8 0.00
700 3 0.00
701 11 0.00
702 9 0.00
703 1 0.00
704 6 0.00
705 13 0.00
706 2 0.00
707 8 0.00
708 6 0.00
709 19 0.00
710 2 0.00
711 5 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (617 bp):
AAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAATTAGAGACTTAAATTTTGGGGCGTTACAA
CTCTACCCCCTTTAACAAAATTTTGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTAC
TGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTT
GACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCT
CCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAG
CGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTC
AAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTGG
AAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCG
GATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAAC
ACTCCCATACACACCCAAATCACTTAGCCATT
Found at i:5222150 original size:25 final size:25
Alignment explanation
Indices: 5222122--5222169 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
5222112 ATTTACCAGG
5222122 TCAGAAAAGACGAGGGTATTACTAC
1 TCAGAAAAGACGAGGGTATTACTAC
* *
5222147 TCAGAATAGCCGAGGGTATTACT
1 TCAGAAAAGACGAGGGTATTACT
5222170 GTCGCATCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (25 bp):
TCAGAAAAGACGAGGGTATTACTAC
Found at i:5223218 original size:73 final size:73
Alignment explanation
Indices: 5223099--5223246 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
5223089 GTTCAATGAA
*
5223099 CCGACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGT
1 CCGACCAGTGGAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGT
5223164 GCCAGTGT
66 GCCAGTGT
5223172 CCGACCAGTGGAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGT
1 CCGACCAGTGGAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGT
5223237 GCCAGTGT
66 GCCAGTGT
5223245 CC
1 CC
5223247 AGATTCATTT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (73 bp):
CCGACCAGTGGAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGT
GCCAGTGT
Found at i:5223827 original size:690 final size:689
Alignment explanation
Indices: 5222486--5223864 Score: 2357
Period size: 690 Copynumber: 2.0 Consensus size: 689
5222476 CAATGAACCT
5222486 ACCAGTGGAAAAATAAGCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGACCTAAGTGCCAG
1 ACCAGTGGAAAAATAAGCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGACCTAAGTGCCAG
* * * * *
5222551 TGTCCGGATTCATTTAAGAGAAAAACTAAAAATTGTGTACAGGCCAAGACTTGAACTCAGGCTTC
66 TGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCATC
** *
5222616 CCAAGGACTCCCATACACACCCTAATCACTTAGCCATTAAAGCAAACAAGCAATTTTTTTCAAAA
131 CCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTTTTCAAAA
*
5222681 CATGCAGAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCACATTTAACAAAATTTTGA
196 CATGCAGAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCACATTGAACAAAATTTTGA
*
5222746 CCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTGTTCGGGTTCCCA
261 CCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCA
*
5222811 CGTATCTTCTTCTGAACTGTGATTACGCCAAAACACTTTGACTAATGGAATAGATTTCTTCTTCA
326 CGTAGCTTCTTCTGAACTGTGATTACGCCAAAACACTTTGACTAATGGAATAGATTTCTTCTTCA
*
5222876 GTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCACCTCGAAGGTCAGATCTGGCCCAAGC
391 GTAACTTAACCTCACAGTCCAAAATCTGCACTGGCTTCACCTCGAAGGTCAGATCTGGCCCAAGC
*
5222941 TCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGTGATAAATCCTTAGTATGGAGACGTG
456 TCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTG
* * * *
5223006 AGGCTCATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCCACAT
521 AAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGCGATCGATCCCACAT
* *
5223071 GTTTCAGTACATGGTAAGGTTCAATGAACCGACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA
586 GTTTCAGTACACGGTAAGGTTCAATGAACCGACCAGTGGAAAAATAAGCTCTTTATGTCAAAAAA
*
5223136 CAAGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCG
651 CAAGTATTAATATATAAAAGGCCTAAGTGCCAGAGTCCG
*
5223175 ACCAGTGGAAAAATAAGCTCCTTGTGTCAAAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
1 ACCAGTGGAAAAATAAGCT--TTGTGTCAAAAAACAAGTATTAATATATAAAAGACCTAAGTGCC
5223240 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCA
64 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCA
* *
5223305 TCTCAAACACTCCCATACACACCCAAATCACTTAGACC-TTGAAGCAAACAAGC-ATTTTTTTCA
129 TCCCAAACACTCCCATACACACCCAAATCACTTAG-CCATTAAAGCAAACAAGCAATTTTTTTCA
* * *
5223368 AAACATGCAGAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTGAACAAAATTT
193 AAACATGCAGAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCACATTGAACAAAATTT
* *
5223433 TGACCTCAAAATTTACCAGGTCAGAAAAGATGAGGGTATTGCTGTCGCATCGCCTCTTCGGGTTC
258 TGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTC
* * * *
5223498 CCACGTCGCTTCTTCTGAACTGTGATTATGCCAAAGCACTTTGACTAATGGAATAGATTTTTTCT
323 CCACGTAGCTTCTTCTGAACTGTGATTACGCCAAAACACTTTGACTAATGGAATAGATTTCTTCT
* **
5223563 TCAGTAACTTAACCTCACAGTCTAAAATCTGCACTGGCTTTTCCTCGAAGGTCAGATCTGGCCCA
388 TCAGTAACTTAACCTCACAGTCCAAAATCTGCACTGGCTTCACCTCGAAGGTCAGATCTGGCCCA
5223628 AGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGAC
453 AGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGAC
* * * *
5223693 GTGAAGCAGATCATGAATCTGGTCTAATTTCAGAGGAAAGTCAAGTTTATAAGCGATTGATCCCA
518 GTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGCGATCGATCCCA
*
5223758 CATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTATGTCAAA
583 CATGTTTCAGTACACGGTAAGGTTCAATGAACCGACCAGTGGAAAAATAAGCTCTTTATGTCAAA
5223823 AAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGAGTCCG
648 AAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGAGTCCG
5223865 GATTCATTTA
Statistics
Matches: 647, Mismatches: 40, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
689 19 0.03
690 478 0.74
691 148 0.23
692 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (689 bp):
ACCAGTGGAAAAATAAGCTTTGTGTCAAAAAACAAGTATTAATATATAAAAGACCTAAGTGCCAG
TGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTTGAACCCAGGCATC
CCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTTTTCAAAA
CATGCAGAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCACATTGAACAAAATTTTGA
CCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCA
CGTAGCTTCTTCTGAACTGTGATTACGCCAAAACACTTTGACTAATGGAATAGATTTCTTCTTCA
GTAACTTAACCTCACAGTCCAAAATCTGCACTGGCTTCACCTCGAAGGTCAGATCTGGCCCAAGC
TCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTG
AAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGCGATCGATCCCACAT
GTTTCAGTACACGGTAAGGTTCAATGAACCGACCAGTGGAAAAATAAGCTCTTTATGTCAAAAAA
CAAGTATTAATATATAAAAGGCCTAAGTGCCAGAGTCCG
Found at i:5230251 original size:375 final size:375
Alignment explanation
Indices: 5229561--5230294 Score: 1021
Period size: 375 Copynumber: 2.0 Consensus size: 375
5229551 TTAGAGACTT
** *
5229561 AAATTTTGGGGCGTTACAACTCTACCCCTTTTAAGAAAATTTTAGCCTCGAAATTTACCTAGTCA
1 AAATTTTAAGGCGTTACAACTCTACCCCCTTTAAGAAAATTTTAGCCTCGAAATTTACCTAGTCA
* * *
5229626 GAAAAGATGAGGGTATTACTGTCGCATCGCATCACCAGGTTTCCACGTGACTTCTTCTCAACTGT
66 AAAAAGATGAGGGTATTACTGTCGCATCGCATCACCAGGTTCCCACGTGACTTCTTCTCAACCGT
* * * *
5229691 TATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTCACGGTAC
131 GATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTAACTTAACCTCACGGTAC
* * * * * * *
5229756 AACATCTACATTGGCTTCTCCTCTAAGGTCAGATCTGGCCTAATCTCAATCTCCTCAACTGGTAC
196 AAAATCTACACTGGCATCTACTCTAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTAC
* * * * *
5229821 TATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAGCACATCATGAATCTGGT
261 TATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGACGTGAAACACATCATGAATATGGT
*
5229886 CTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCGAACGTCCC
326 CTAATCTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCGAACGTCCC
5229936 AAATTTTAAGGCGTTACAACTCTACCCCCTTT-AGTAAAATTTT-GACCTCGAAATTTACC-AGG
1 AAATTTTAAGGCGTTACAACTCTACCCCCTTTAAG-AAAATTTTAG-CCTCGAAATTTACCTA-G
** * ** * *
5229998 TCAAAAAAGATGAGGGTATTGTTGTCGCATCGCCTCTTCGGGTTCCCACGTTG-CTTCTTCTGAA
63 TCAAAAAAGATGAGGGTATTACTGTCGCATCGCATCACCAGGTTCCCACG-TGACTTCTTCTCAA
*
5230062 CCGTGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTACCTTAACCTCACG
127 CCGTGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTAACTTAACCTCACG
* **
5230127 GT-CTAAAATTTGTACTGGCATCTACT-TAAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAAC
192 GTAC-AAAATCTACACTGGCATCTACTCT-AAGGTCAGATCTAGCCTAACCTCAATCTCCTCAAC
* *
5230190 TAGTACTATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGATGTGAAACACATCATTAA
255 TAGTACTATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGACGTGAAACACATCATGAA
* * *
5230255 TATGGTTTAATCTCTGAGGCAACTCAAGTTTATAAGCGAT
320 TATGGTCTAATCTCAGAGGAAACTCAAGTTTATAAGCGAT
5230295 TGGTCCCACA
Statistics
Matches: 314, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
374 6 0.02
375 306 0.97
376 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (375 bp):
AAATTTTAAGGCGTTACAACTCTACCCCCTTTAAGAAAATTTTAGCCTCGAAATTTACCTAGTCA
AAAAAGATGAGGGTATTACTGTCGCATCGCATCACCAGGTTCCCACGTGACTTCTTCTCAACCGT
GATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTAACTTAACCTCACGGTAC
AAAATCTACACTGGCATCTACTCTAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTAC
TATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGACGTGAAACACATCATGAATATGGT
CTAATCTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCGAACGTCCC
Found at i:5233586 original size:619 final size:617
Alignment explanation
Indices: 5231127--5239703 Score: 13974
Period size: 618 Copynumber: 14.0 Consensus size: 617
5231117 GTCTCATCGC
5231127 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATATATAAAAG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
* *
5231191 GCCTAAGTGCCAGTGTCCAGATTTATTTAAGAGAAAAACTAAAAATTGTGCAAAGGACAAGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
* *
5231256 GAACCCAGGCTTCTCAAACACTCTCATACACACCCAGATCACTTAGCCATTAAAGCAAACAAGCA
131 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
* *
5231321 ATTTTTTTCAAAACATGGAAAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCCCCTTT
196 ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
* * * *
5231386 AACAAAATTTTGACCTCAAAATTTATCAGGTCATAAAAGGCGAGGGTATTACTCTCGCATCGCCT
261 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
* * *
5231451 CTTTGGG-TCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAATCACTTTGACTAATGAAATA
326 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
*
5231515 GATTTCTTCTTCAGTAACTTAACCTCACGGTCTAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
391 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
*
5231580 ATTTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
456 ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
*
5231645 GTATGGGGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
521 GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
5231710 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
586 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
*
5231742 TTCAATGAACCTACTAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
*
5231807 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGACAAACTAAAAATTGTGCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
*
5231872 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAGATCACTTAGCCATTAAAGCAAACAAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* * *
5231937 AATTTTTTTCAAAACCTGGAAAAATTAGAGACTTAAATTTTTGGGCGTTACAACTCTACCCCCTT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
** * *
5232002 TAACAAAATTTCGACCTCAAAAAAATACCAGGTCAGAAAAGACGAGGGTAGTACTCTCACATCGC
260 TAACAAAATTTCGACCTC-AAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGC
*
5232067 CTCTTCGGGTTGCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
324 CTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
* *
5232132 TAGATTTCTTCTTCAGTAA-TTAACCACACGGTCCAAAATCTGCACTGGCTTGTCCTCGAAGGTC
389 TAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
* * * * *
5232196 AGAGCTGGCCAAAGCTCAATCTTTTCAACTTGTACTATCTGCGTGGGATCAGAGTGATAAATCCT
454 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCT
*
5232261 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTTAGAGGAAACTCAAGTTAATAAG
519 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAG
*
5232326 TGATCGGTCCCACATGTTTCAGTACACGGAAAGG
584 TGATCGGTCCCACATGTTTCAGTACACGGTAAGG
*
5232360 TTCAATGAACCTACAAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAGAAGTATTAATATATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
* *
5232425 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAAGTAAAAATTGTGCCAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
* *
5232490 TGAACCCAGGCTTCTCAAACACTCCCATACAAACCCAGATCACTTAGCCATTAAAGCAAACAAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* *
5232555 AATTTTTTTCAAAACATGGAAAAATTAGAGACTTAAATTTTAGGGCGTTACAACTCTACCCCCTT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
5232620 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
260 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
* * *
5232685 TCTT-GGGGTCGCACGTGGCTTCTTCTGAACTATGATTACGCCAAAGCACTTTGACTAAT-GAAT
325 TCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAAT
* *
5232748 AGATTTCTTCTTCTGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGGCA
390 AGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCA
* * *
5232813 GATCTAGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGTGATAAATCATT
455 GATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTT
*
5232878 AGTATGGGGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGT
520 AGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGT
5232943 GATCGGTCCCACATGTTTCAGTACACGGTAAGG
585 GATCGGTCCCACATGTTTCAGTACACGGTAAGG
5232976 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
* * * **
5233041 GGCCTAATTGCCAGTGTCTAAATTCATTTAAGAGAAAAACTAAAAATTACGCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
* *
5233106 TGAACCCAGGCTTATCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACTAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* *
5233171 AATTTTTTTTCAAAACATGCAAAAATTAGAGACTTATATTTTGGGGCATTACAACTCTACCCCCT
195 AA-TTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCT
* * *
5233236 TTAACAAAATTTCGACCTAAAAAATTACCAGGTCAGAAAAGACGAGGGTATTACTATCGCATCGC
259 TTAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGC
*
5233301 CTCTTCGGGTTCCCACGTGGCTTCTTTTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
324 CTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
* *
5233366 TAGATTTCATCTTCAGTAACTTCACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
389 TAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
* *
5233431 ATATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGATCGATAAATCCT
454 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCT
* *
5233496 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCAAATTTCAGAGGAAACTCAAGGTAATAAG
519 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAG
** **
5233561 TGATATGTCCCACATGTTTCAGTACATAGTAAGG
584 TGATCGGTCCCACATGTTTCAGTACACGGTAAGG
*
5233595 TTCAATGAACCTACCAGTGGAAAACTAAGCTCTTTGTGTCAAAAAACAAGTATTAATATATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
* * *
5233660 GGCCTAGGTGCCAGTGTCCAGATTCATTTAAGAGAAAAATTAAAAATTGTGCAAAGGCCAAGGCT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
*
5233725 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAAC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* * * *
5233790 AATTTTTTTCAAAACATGAAAAAATTAGAGACTTAAATTATGGGGTGTTACAACTTTACCCCCTT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
*
5233855 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTATCGCATCGCC
260 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
* * *
5233920 TCTTCAGGTTCCCACGTGGCTTCTTCTGTACTATGATTACGCCAAAGCACTTTGACTAATGGAAT
325 TCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAAT
** * *
5233985 AGATTTCTTCTTCAGTAACTTAACCTCATTGACCAAAATCTGCGCTGGCTTCTCCTCGAAGGTCA
390 AGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCA
*
5234050 GATCTGGCCAAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTT
455 GATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTT
* * *
5234115 AGTATGGAGATGTGAAGCACATTATGAATCTGGTCTAATTTTAGAGGAAACTCAAGTTAATAAGT
520 AGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGT
*
5234180 GATCGGTCCCACATGTTTCAGTACACGGTAGGG
585 GATCGGTCCCACATGTTTCAGTACACGGTAAGG
5234213 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAGAAGTATTAATATATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
5234278 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
5234343 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* * * *
5234408 AATTTTTTTCAAAACATCCAAAAATTAGAGACTTAAGTTTTAGGGCGTTACAACTCTACCCCCAT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
* *
5234473 TAACAAAATTTTGACCTCAAAATTTGCCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
260 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
5234538 TCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAAT
325 TCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAAT
* *
5234603 AGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGTACTGGCTTGTCCTCGAAGGTCA
390 AGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCA
5234668 GATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTT
455 GATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTT
* *
5234733 TGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAAGAAACTCAAGTTAATAAGT
520 AGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGT
*
5234798 GATCGGTCCCACATGTTTCAGTACATGGTAAGG
585 GATCGGTCCCACATGTTTCAGTACACGGTAAGG
5234831 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATATATAAAAG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
*
5234895 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAAGTAAAAATTGTGCAAAGGCCAAGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
* *
5234960 GAACCAAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGAAAACAAGCA
131 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
* * *
5235025 ATTTTTTTCAAAACATGCAAAAATTATAGACTTAAATTTTAGGGCGTTACAACTCTACTCCCTTT
196 ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
* *
5235090 AATAAAATTTCGAGCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
261 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
*
5235155 CTTCGGGTGCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
326 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
* * *
5235220 GATTTCTTCTTCAGTAACTTAACCTCACGATACAAAATCTGCACTGGCTTGTCCTCGAAGGTCAG
391 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
* * *
5235285 ATCTGGCCAAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGTGATAAATCCTTT
456 ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
* *
5235350 GTATGGAGACGTGAAGCACATCATGAATATGGTCTAATTTCAGAAGAAACTCAAGTTAATAAGTG
521 GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
* *
5235415 ATCGGTCCCACATGTTTTAGTACATGGTAAGG
586 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
5235447 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATATATAAAAG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
* *
5235511 GCCTAAGTGCCAGAGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGG-CAAGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
* *
5235575 GAACCCAGGCTTCTCAAACACTCCCACACACACCGAAATCACTTAGCCATTAAAGCAAACAAGCA
131 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
* * * * * *
5235640 ATTTTCTTCAAAACATGCAAAATTTATAGACTTAAATTTTGGGGCATTACAGCTCTACGCCCTTT
196 ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
* * * * *
5235705 AACAAAATTTCGACCTCAAAATTTACCAGGTCAAAAAAGGCGAAGGTATTACTGTCGCATCCCCT
261 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
* *
5235770 CTTCGGGTTCCCACGTGGTTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATAGAATA
326 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
*
5235835 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCCTCTCCTCGAAGGTCAG
391 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
* *
5235900 ATCTGGCCCAAGCTCAATCTTGTCAACTTGTACTATCTGAGTGGGATCAGAGTGATAAATCCTTA
456 ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
* *
5235965 GTATGGGGACGTGAAGCACATCATGAATCTGGCCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
521 GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
*
5236030 ATCGGTCCCACATGTTTCAGTACACGGCAAGG
586 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
* * *
5236062 TTCAACGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTAAAAAAACAAGTATTAATATATAGAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
* * * *
5236127 GACCTAATTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATTCTGCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
* * *
5236192 TGAACCCAGGCTTCCCAAACACTCCCATACCCACCCAAATCACTTAGCCATTTAAGCAAACAAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* * *
5236257 AATTTTTTTTCTAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTGCAACTCTACCCCAT
195 AA-TTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCT
* *
5236322 TTAACAAAATTTTC-ACCTCAAAATTTACAAGGTCAGAAAAGACGAGGGTATTACTATCGCATCG
259 TTAACAAAA-TTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCG
*
5236386 CCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGTACTTTGACTAATGGA
323 CCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGA
* * *
5236451 ATAGATTTCTTCTTCAATAACTTAACCTCACGGTCCAAAATCTGCACTAGCTTCTCCTTGAAGGT
388 ATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGT
*
5236516 CAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTATTATCTGAGTGGGATCAGAGCGATAAATCC
453 CAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCC
5236581 TTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAA
518 TTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAA
*
5236646 GTGATCGATCCCACATGTTTCAGTACACGGTAAGG
583 GTGATCGGTCCCACATGTTTCAGTACACGGTAAGG
*
5236681 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATAGATAAAAG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
* * * * *
5236745 GCCCAAGTGCCAGAGTCAAGGTTCATTTAAGAGAAAAACTAAAAATTCTGCAAAGGCCAAGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
* * *
5236810 GAACCCAGGCTTCTCAAACACTCCCACACCCACCGAAATCACTTAGCCATTAAAGCAAACAAGCA
131 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
* * * *
5236875 ATTTTCTTCAAAACATGCAAAATTTATAGACTTAAATTTTGGGGCGTTACAACTCTACGCCCTTT
196 ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
* *
5236940 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGTTATTACTGTCGCATCGCCT
261 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
*
5237005 CTTCGGGTTCCCACGTGGCTTCTACTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
326 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
*
5237070 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTTGAAGGTCAG
391 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
* *
5237135 ATCTGGCCCAAGCTCAATCTTTTCAACTTGTACTATTTGAGTGGGATCAGAGCGATAAATCCTTA
456 ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
* * * *
5237200 GTATGGGGACGTGAATCACATCATGAATCTGGCCTAATTTCAGAGGAAACTCAAGTTAATAATTG
521 GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
*
5237265 ATCGGTCCCACATGTTTCAGTACACGGCAAGG
586 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
* * *
5237297 TTCAACGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTAAAAAAACAAGTATTAATATATAGAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAA-AAGTATTAATATATAAAA
* * * * *
5237362 GACCTAATTGCCAGTGTCAAGATTCATTTAAGAGAAAAACGAAAATTTGTGCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
* *
5237427 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCTCTTAGCCATTTAAGCAAACAAGC
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
* * * *
5237492 AATTTTTTTTCTAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTGCAA-TTTACCCCAT
195 AA-TTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCT
* * *
5237556 TTAACAAAATTTTGACCTCAAAATTTACAAGGTCAGAAAAGACGAGGGTATTACTATCGCATCGC
259 TTAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGC
* * *
5237621 CTCTTTGGGTTCCCACGTGGCTTCTTTTGAACTGTGATTCCGCCAAAGCACTTTGACTAATGGAA
324 CTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
* *
5237686 TAGATTTCTTCTTCAGTAACTTAACCTCACGATCCAAAATCTGCACTGGCTTCACCTCGAAGGTC
389 TAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
*
5237751 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGTGATAAATCCT
454 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCT
5237816 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAG
519 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAG
* *
5237881 TGATCGGT-CCACATATTTCAGTACACGGTATGG
584 TGATCGGTCCCACATGTTTCAGTACACGGTAAGG
* * *
5237914 TTCAATGAACCTACCCGTGGAAAAATAAGCTCTTTGTGTCCAAAAACAAGTATTAATAAATAAAA
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGT-CAAAAAAAAGTATTAATATATAAAA
* *
5237979 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGACAAACTAAAAATTGTTCAAAGGCCAAGACT
65 GGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACT
*
5238044 TGAACCCA-GCTTCTCAAACACTCCCATACACACCCAAGTCACTTAGCCATTAAAG----C-A--
130 TGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
*
5238101 AA-------C---A-A-GC---AATT------TT--A-----GGGCGTTACAACTGTACCCCCTT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
* ** * *
5238138 TAATAAAATTTCGACCTCAAAAAAATACTAGGTCAGAAAAGACGAGGGTATTACTCTCACATCGC
260 TAACAAAATTTCGACCTC-AAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGC
5238203 CTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
324 CTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAA
* * *
5238268 TAGATTTCTTCTTTAGTAACTTAACCTCACGGTCCAAAATCTGCATTGGCTTCTCCTTGAAGGTC
389 TAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
5238333 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCT
454 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCT
*
5238398 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAAATCAAGTTAATAAG
519 TAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAG
* *
5238463 TGATCGGTCCCACATGTTTCAGTACTCGATAAGG
584 TGATCGGTCCCACATGTTTCAGTACACGGTAAGG
*
5238497 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATAGATAAAAG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
* * *
5238561 GCCCAAGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATTTTGCAAAGGCCAAGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
5238626 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
131 GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
* * *
5238691 ATTTTCTTCAAAACATGCAAAAATT--AGACTTAAATTTTGGGGTGTTACAACTCTACGCCCTTT
196 ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
* * * *
5238754 AACAAAATTTCGAGCTCAAAATTTACCAGGTCAGAAAAGACGTGGGTATTACTGTCGTATCGCCT
261 AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
5238819 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
326 CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
5238884 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
391 GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
* *
5238949 ATCTGGCCTAACCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
456 ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
*
5239014 GTATGGAGACGTGAAGCACATCATGAATTTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
521 GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
* *
5239079 ATCGGTCCAATATGTTTCAGTACACGGTAAGG
586 ATCGGTCCCACATGTTTCAGTACACGGTAAGG
* * * *
5239111 TTTAATGAACCTACCCGTGGAAAAATAAGCTCTTTGTTTCAAAAAAAAGTATTAATATATAAAGG
1 TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
* *
5239176 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATGGTGCAAAGGCCAGGACTT
66 GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
5239241 GAACCCAAGG-TTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
131 GAACCC-AGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGC
** *
5239305 AATTTCCTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTA-CCCCGT
195 AATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTT
** * * * * *
5239369 TAGTAAAATTTCGAGCTCGAAATTTACCAGGTCAGAAAAGATGAGAGTATTACTATCGCATCGCC
260 TAACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCC
* **
5239434 TCTTCTGGTTCTTACGTGGCTTCTTCTGAACT-TGATTACGCCAAAGCACTTTGACTAATGGAAT
325 TCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAAT
* * * *
5239498 AGATTTCTTCCTT-AGTAACTTAACCTTACGGTCCAAAATCCGCATTGGCTTCTCCTCTAAGGTC
390 AGATTTCTT-CTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTC
* * * * * *
5239562 AGATCTGGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGGATCAGAGGGATAACA-CC
454 AGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAA-ATCC
* * * * *
5239626 TTA-TCATGGAGACATGAAACACATCTTGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATA
518 TTAGT-ATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATA
* * *
5239690 GGCGATCAGTCCCA
582 AGTGATCGGTCCCA
5239704 AACGTCCCAA
Statistics
Matches: 7426, Mismatches: 474, Indels: 124
0.93 0.06 0.02
Matches are distributed among these distances:
580 10 0.00
581 114 0.02
582 346 0.05
583 59 0.01
585 1 0.00
586 1 0.00
587 3 0.00
589 2 0.00
593 4 0.00
596 3 0.00
597 1 0.00
598 1 0.00
599 1 0.00
600 1 0.00
601 3 0.00
604 4 0.00
608 2 0.00
609 2 0.00
610 1 0.00
611 1 0.00
612 1 0.00
614 360 0.05
615 978 0.13
616 1682 0.23
617 783 0.11
618 2115 0.28
619 943 0.13
620 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (617 bp):
TTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAAGTATTAATATATAAAAG
GCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCAAGACTT
GAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
ATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTT
AACAAAATTTCGACCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATTACTCTCGCATCGCCT
CTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATA
GATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAG
ATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGATCAGAGCGATAAATCCTTA
GTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTAATAAGTG
ATCGGTCCCACATGTTTCAGTACACGGTAAGG
Found at i:5239549 original size:615 final size:613
Alignment explanation
Indices: 5238108--5239685 Score: 2545
Period size: 615 Copynumber: 2.6 Consensus size: 613
5238098 GCAAACAAGC
* * * ** *
5238108 AATTTTAGGGCGTTACAACTGTACCCCCTTTAATAAAATTTCGACCTCAAAAAAATACTAGGTCA
1 AATTTTGGGGCGTTACAACTCTA-CCCCTTTAATAAAATTTCGAGCTC-AAAATTTACCAGGTCA
* *
5238173 GAAAAGACGAGGGTATTACTCTCACATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGT
64 GAAAAGACGAGGGTATTACTATCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGT
*
5238238 GATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTTAGTAACTTAACCTCACGGTCC
129 GATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTCACGGTCC
* * *
5238303 AAAATCTGCATTGGCTTCTCCTTGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTAC
194 AAAATCTGCATTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTTCTCAACTTGTAC
5238368 TATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGT
259 TATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGT
* * *
5238433 CTAATTTCAGAGGAAAATCAAGTTAATAAGTGATCGGTCCCACATGTTTCAGTACTCGATAAGGT
324 CTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGATAAGGT
5238498 TCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGC
389 TCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGC
**
5238563 CCAAGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATTTTGCAAAGGCCAAGACTTGA
454 CCAAGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATGGTGCAAAGGCCAAGACTTGA
5238628 ACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAAT
519 ACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAAT
*
5238693 TTTCTTCAAAACATGCAAAAATTAGACTTA
584 TTCCTTCAAAACATGCAAAAATTAGACTTA
* *
5238723 AATTTTGGGGTGTTACAACTCTACGCCCTTTAACAAAATTTCGAGCTCAAAATTTACCAGGTCAG
1 AATTTTGGGGCGTTACAACTCTAC-CCCTTTAATAAAATTTCGAGCTCAAAATTTACCAGGTCAG
* * *
5238788 AAAAGACGTGGGTATTACTGTCGTATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTG
65 AAAAGACGAGGGTATTACTATCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTG
5238853 ATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTT-CTTCAGTAACTTAACCTCACGGTCC
130 ATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTT-AGTAACTTAACCTCACGGTCC
*
5238917 AAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTTCTCAACTTGTAC
194 AAAATCTGCATTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTTCTCAACTTGTAC
*
5238982 TATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATTTGGT
259 TATCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGT
* *
5239047 CTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCAATATGTTTCAGTACACGGTAAGGT
324 CTAATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGATAAGGT
* * * * *
5239112 TTAATGAACCTACCCGTGGAAAAATAAGCTCTTTGTTTCAAAAAAAAGTATTAATATATAAAGGG
389 TCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTC-AAAAAAAGTATTAATAGATAAAAGG
* * *
5239177 CCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATGGTGCAAAGGCCAGGACTTG
453 CCCAAGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATGGTGCAAAGGCCAAGACTTG
5239242 AACCCAAGG-TTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
518 AACCC-AGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCA
5239306 ATTTCCTTCAAAACATGCAAAAATTAGAGACTTA
582 ATTTCCTTCAAAACATGCAAAAATT--AGACTTA
* * *
5239340 AATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTCGAGCTCGAAATTTACCAGGTCAGA
1 AATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGAGCTCAAAATTTACCAGGTCAGA
* * * **
5239405 AAAGATGAGAGTATTACTATCGCATCGCCTCTTCTGGTTCTTACGTGGCTTCTTCTGAACT-TGA
66 AAAGACGAGGGTATTACTATCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGA
*
5239469 TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTTACGGTCCAA
131 TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTCACGGTCCAA
* * * *
5239534 AATCCGCATTGGCTTCTCCTCTAAGGTCAGATCTGGCCTAACCTCAATCTCCTCAACTGGTACTA
196 AATCTGCATTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTTCTCAACTTGTACTA
* * * * *
5239599 TGTGAGTGGGATCAGAGGGATAACA-CCTTA-TCATGGAGACATGAAACACATCTTGAATCTGGT
261 TCTGAGTGGGATCAGAGCGATAA-ATCCTTAGT-ATGGAGACGTGAAGCACATCATGAATCTGGT
*
5239662 CTAATTTCAGAGGCAACTCAAGTT
324 CTAATTTCAGAGGAAACTCAAGTT
5239686 TATAGGCGAT
Statistics
Matches: 894, Mismatches: 60, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
613 2 0.00
614 358 0.40
615 407 0.46
616 97 0.11
617 30 0.03
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (613 bp):
AATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGAGCTCAAAATTTACCAGGTCAGA
AAAGACGAGGGTATTACTATCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGA
TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTCACGGTCCAA
AATCTGCATTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTTCTCAACTTGTACTA
TCTGAGTGGGATCAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCT
AATTTCAGAGGAAACTCAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGATAAGGTTC
AATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGCCC
AAGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATGGTGCAAAGGCCAAGACTTGAAC
CCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTT
CCTTCAAAACATGCAAAAATTAGACTTA
Found at i:5240057 original size:375 final size:372
Alignment explanation
Indices: 5239339--5240083 Score: 1068
Period size: 375 Copynumber: 2.0 Consensus size: 372
5239329 TTAGAGACTT
*
5239339 AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTCGAGCTCGAAATTTACCAGGTCAG
1 AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTCGACCTCGAAATTTACCAGGTCAG
**
5239404 AAAAGATGAGAGTATTACTATCGCATCGCCTCTTCTGGTTCTTACGTGGCTTCTTCTGAACTTGA
66 AAAAGATGAGAGTATTACTATCGCATCGCCTCTTCTGGTTCCCACGTGGCTTCTTCTGAACTTGA
* * *
5239469 TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTTACGGTCCAA
131 TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTCCAA
* * * * *
5239534 AATCCGCATTGGCTTCTCCTCTAAGGTCAGATCTGGCCTAACCTCAATCTCCTCAACTGGTACTA
196 AATCCGCA-TGGCATCTACTCTAAGGTCAGATCTAGCCCAACCTCAATCTCCTCAACTAGTACTA
* * * *
5239599 TGTGAGTGGGATCAGAGGGATAACACCTTATCATGGAGACATGAAACACATCTTGAATCTGGTCT
260 TGTGAGTGGGATCAAAGAGATAACACCTTAGCATGGAGACATCAAACACATCTTGAATCTGGTCT
* *
5239664 AATTTCAGAGGCAACTCAAGTTTATAGGCGATCAGTCCCAAACGTCCC
325 AATCTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACGTCCC
* * *
5239712 AAATTTTGGGGCGTTATAACTCTACGCCCTTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCA
1 AAATTTTGGGGCGTTACAACTCTAC-CCCGTTAGTAAAATTTCGACCTCGAAATTTACCAGGTCA
* * * * *
5239777 GAAAAGATGAGGGTGTTGCTATCGTATCGCCTCTT-TGGGTTCCCACGTTGCTTCTTCTGAACTG
65 GAAAAGATGAGAGTATTACTATCGCATCGCCTCTTCT-GGTTCCCACGTGGCTTCTTCTGAACT-
* *
5239841 TGATTACGGCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATACCTTAACCTCACGGTC
128 TGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTC
*
5239906 CAAAATCTTTGC-TGGCATCTACTC-AATGGTCAGATCTAGCCCAACCTCAATCTCCTCAACTAG
193 CAAAATC--CGCATGGCATCTACTCTAA-GGTCAGATCTAGCCCAACCTCAATCTCCTCAACTAG
* **
5239969 TACTATGTGAGTGGGATCAAAGAGATAA-AGCCTTAGCATGGTGATGTCAAACACATCATT-AAT
255 TACTATGTGAGTGGGATCAAAGAGATAACA-CCTTAGCATGGAGACATCAAACACATC-TTGAAT
* * *
5240032 CTGGTCTAATCTCAGAGGCAACTCAAGTTTATAAGCGCTCGGTCCCACACGT
318 CTGGTCTAATCTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACGT
5240084 TGCAGTACAC
Statistics
Matches: 330, Mismatches: 34, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
373 25 0.08
374 93 0.28
375 208 0.63
376 2 0.01
377 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (372 bp):
AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTCGACCTCGAAATTTACCAGGTCAG
AAAAGATGAGAGTATTACTATCGCATCGCCTCTTCTGGTTCCCACGTGGCTTCTTCTGAACTTGA
TTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTCCAA
AATCCGCATGGCATCTACTCTAAGGTCAGATCTAGCCCAACCTCAATCTCCTCAACTAGTACTAT
GTGAGTGGGATCAAAGAGATAACACCTTAGCATGGAGACATCAAACACATCTTGAATCTGGTCTA
ATCTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACGTCCC
Found at i:5240895 original size:561 final size:561
Alignment explanation
Indices: 5239712--5241334 Score: 1702
Period size: 570 Copynumber: 2.9 Consensus size: 561
5239702 CAAACGTCCC
* * *
5239712 AAATTTTGGGGCGTTATAACTCTACGCCCTTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCA
1 AAATTTTGGGGCGTTACAACTCTACCCCCTTTAGGAAAATTTTGACCTCGAAATTTACCAGGTCA
* * *
5239777 GAAAAGATGAGGGTGTTGCTATCGTATCGCCTCTTTGGGTTCCCACGTTGCTTCTTCTGAACTGT
66 GAAAAGATGAGGGTATTGATGTCGTATCGCCTCTTTGGGTTCCCACGTTGCTTCTTCTGAACTGT
* *
5239842 GATTACGGCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATACCTTAACCTCACGGTCC
131 GATT------AAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTAC
*** * * * *
5239907 AAAATCTTTGCTGGCATCTACTC-AATGGTCAGATCTAGCCCAACCTCAATCTCCTCAACTAGTA
190 AAAATCTGCACTGGCTTCT-CTCGAA-GGTAAGATCTGGCCTAACCTCAATCTCCTCAACTAGTA
* * * * * * * *
5239971 CTATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGTGATGTCAAACACATCATTAATCTGG
253 CTATGTGACT-GGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGG
* * * * *
5240036 TCTAATCTCAGAGGCAACTCAAGTTTATAAGCGCTCGGTCCCACACGTTGCAGTACACGGTAAGG
317 TCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTTTCAGTACACGGTAAGG
* * * * * ** * *
5240101 CCCAACG--GCT---ATGTG-CCAGT-GTGC-C--AGTGTCCAGATTAATTTAAG-AGAAAAACT
382 CCCAATGAACCTACCATG-GACAAATAG-GCTCTTTGTGT-C--ATTAA-ACAAGTAGTAATA-T
* ** ** * *** * * * *
5240155 A-AAAATTGTGCC-AAG-GCCAAT-ACTTGAACCCAGGCTT-CTCAAACACTCCCATGCACACCT
440 ATAAAA--G-GCCTAAGTGCCAATGTCCAG-ATTC--GTTTAAGAAAAAACTACCATACACACCC
5240215 AAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAACTGAGAGACTT
499 AAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAACTGAGAGACTT
* * * *
5240278 AAATTTTGGGACGCTACAACTCTACCCCATTT-GGCAAAATTTTGACCTCAAAATTTACCAGGTC
1 AAATTTTGGGGCGTTACAACTCTACCCCCTTTAGG-AAAATTTTGACCTCGAAATTTACCAGGTC
* * *
5240342 AGAAAAGATGAGGGTATTGATGTCGCATCGCCCCTTTGGGTTCCCACGTTGCTTCTTCTGAACAG
65 AGAAAAGATGAGGGTATTGATGTCGTATCGCCTCTTTGGGTTCCCACGTTGCTTCTTCTGAACTG
* *
5240407 TGATT-A-CACTTTGACTAATGGAATAGATTTCTTTCTCAGTACCTTAACCCCACGGTACAAAAT
130 TGATTAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTACAAAAT
* * *
5240470 CTGCACTGGCTTCTCGTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCCAACTAGTACTCTGT
195 CTGCACTGGCTTCTC-TCGAAGGTAAGATCTGGCCTAACCTCAATCTCCTCAACTAGTACTATGT
*
5240535 GACTGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAATACATCATGAATCTGGTCTAATT
259 GACTGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATT
* * * * *
5240600 TCAGAGGAAACTCAAGTTTATATGCGATCAGCCCCACATGTTTTAGTACACGGTAAGCCCCAATG
324 TCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTTTCAGTACACGGTAAGGCCCAATG
* * *
5240665 AACCTACCACTGGACTAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATATAAACGGCCTAG
389 AACCTACCA-TGGACAAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATATAAAAGGCCTAA
*
5240730 GTGCCAATGTCCAGATTCGTTTAAGAAAAAACTACCATACACACCCAAATCACTTAGCCATTAAT
453 GTGCCAATGTCCAGATTCGTTTAAGAAAAAACTACCATACACACCCAAATCACATAGCCATTAA-
* * *
5240795 GAA-AA-CAAGCAATTTGTGTCTAAACATGC-AAACATTAGATA-TGT
517 -AACAATCAAGCAATTTGTGTCAAAACATGCAAAAC-TGAGAGACT-T
* *
5240839 AAATTTTGGGGCGTTACAACTTTACCCCCTTTAGGAAAA-TTTCAGCCTCGAAATTTACCTA-GT
1 AAATTTTGGGGCGTTACAACTCTACCCCCTTTAGGAAAATTTTGA-CCTCGAAATTTACC-AGGT
* * ** * *
5240902 CAGAAAAGATGAGGCTATT-ACTGTCGTATCGCCTCATCAGGTTCCCACGTGGCTTCTTCTCAAC
64 CAGAAAAGATGAGGGTATTGA-TGTCGTATCGCCTCTTTGGGTTCCCACGTTGCTTCTTCTGAAC
* * *
5240966 TGTTATTATGCCAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTACATTAACCTCACGG
128 TGTGA-T-T----AAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGG
* * *
5241031 TACAAAATCTGCACTGGCTTCTCCTCGAAGGTCAA-ATTTGGTCTAACCTCAATCTCTTCAAC-A
187 TACAAAATCTGCACTGGCTTCT-CTCGAAGGT-AAGATCTGGCCTAACCTCAATCTCCTCAACTA
* * * * *
5241094 GTTACTATGCGACCGTGATCAGAGCGTTAACGTCTTAGCATGGAGACGTGAAGCACATCATGAAT
250 G-TACTATGTGACTG-GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAAT
* *
5241159 CTGGTCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTTTCAGTACATGGT
313 CTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTTTCAGTACACGGT
** * * * *
5241224 AAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTATTAATATAT
378 AAGGCCCAATGAACCTACCA-TGGACAAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATAT
* * *
5241289 AAAAGGCCTAAGTGCCAGTGTCCAAATTCATTTAAGAGAAAAACTA
442 AAAAGGCCTAAGTGCCAATGTCCAGATTCGTTTAAGA-AAAAACTA
5241335 AAAATTCTGC
Statistics
Matches: 890, Mismatches: 126, Indels: 77
0.81 0.12 0.07
Matches are distributed among these distances:
557 108 0.12
558 106 0.12
559 5 0.01
560 16 0.02
561 169 0.19
562 21 0.02
563 25 0.03
564 2 0.00
565 2 0.00
566 123 0.14
568 3 0.00
569 107 0.12
570 195 0.22
571 8 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (561 bp):
AAATTTTGGGGCGTTACAACTCTACCCCCTTTAGGAAAATTTTGACCTCGAAATTTACCAGGTCA
GAAAAGATGAGGGTATTGATGTCGTATCGCCTCTTTGGGTTCCCACGTTGCTTCTTCTGAACTGT
GATTAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTAACCTCACGGTACAAAATC
TGCACTGGCTTCTCTCGAAGGTAAGATCTGGCCTAACCTCAATCTCCTCAACTAGTACTATGTGA
CTGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTC
AGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTTTCAGTACACGGTAAGGCCCAATGAA
CCTACCATGGACAAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATATAAAAGGCCTAAGTG
CCAATGTCCAGATTCGTTTAAGAAAAAACTACCATACACACCCAAATCACATAGCCATTAAAACA
ATCAAGCAATTTGTGTCAAAACATGCAAAACTGAGAGACTT
Found at i:5241944 original size:618 final size:618
Alignment explanation
Indices: 5240764--5243053 Score: 3279
Period size: 618 Copynumber: 3.7 Consensus size: 618
5240754 GAAAAAACTA
* * * * *
5240764 CCATACACACCCAAATCACTTAGCCATTAATGAAAACAAGCAATTTGT-GTCTAAACATGCAAAC
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTT-TCTTCAAAACATGCAAAA
* * ** *
5240828 ATTAGATA-TGTAAATTTTGGGGCGTTACAACTTTACCCCCTTTAGGAAAATTTC-AGCCTCGAA
65 ATTAGAGACT-TAAATTTTGGGGCGTTACAACTCTA-CCCCTTTAATAAAATTTCGA-CCTCAAA
* * * * *
5240891 ATTTACCTA-GTCAGAAAAGATGAGGCTATTACTGTCGTATCGCCTCATCAGGTTCCCACGTGGC
127 ATTTACC-AGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGC
* * * * *
5240955 TTCTTCTCAACTGTTATTATGCCAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGT-ACA
191 TTCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAAC-
* * * *
5241019 TTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTCAAATTTGGTCTAACCTCAAT
255 TTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAAT
* ** * * * *
5241084 CTCTTCAAC-AGTTACTATGC-GACCGTGATCAGAGCGTTAACGT-CTTAGCATGGAGACGTGAA
320 CTCTTCAACTTG-TACTAT-CTGAGTGGGATCAGAGCGATAACATCCTTAGTATGGAGACGTGAA
* * *
5241146 GCACATCATGAATCTGGTCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGT
383 ACACATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACTTGT
* *
5241211 TTCAGTACATGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACA
448 TTCAGTACACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACA
*
5241276 AGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAAATTCATTTAAGAGAAAAACTAAAAATT
513 AGTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATT
*
5241341 CTGCAAAGGCCAAGACTTGAACCCCGGCTTCTCAAACACTC
578 GTGCAAAGGCCAAGACTTGAACCCCGGCTTCTCAAACACTC
* *
5241382 CCACACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAA
* * *
5241447 TTAGAGATTTAAATTTTGGGGCGTTACAACTCCACCCCCTTTAACAAAATTTCGACCTCAAAATT
66 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTA-CCCCTTTAATAAAATTTCGACCTCAAAATT
* *
5241512 TACCAGGTCAGAAGAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCATGTGGCTTCT
130 TACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCT
** * *
5241577 TCTGAACTGTGATTACGCCAAAGCACTTTTTCGAATGGAATAGATTTCTTCTTCAGTAACTTCAC
195 TCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAAC
* * * * *
5241642 CTCATGGTCGAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTTTT
260 CTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTCTT
* *
5241707 CAACTTGTACTATCTGAGTGGGACCAGAGCGTTAA-ATCCTTAGTATGGAGACGTGAAACACATC
325 CAACTTGTACTATCTGAGTGGGATCAGAGCGATAACATCCTTAGTATGGAGACGTGAAACACATC
* *
5241771 ATGAATCTGGTCTAATTTTAGAGGAAGCTCAAGTTTATAAGCGATCGGTCCCACTTGTTTCAGTA
390 ATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACTTGTTTCAGTA
5241836 CACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTATTA
455 CACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTATTA
*
5241901 ATATATAAAAGGCCTAAGTACCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAA
520 ATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAA
* *
5241966 GGCCAAGACTTAAACCCCGGCTTCTCAAACACTT
585 GGCCAAGACTTGAACCCCGGCTTCTCAAACACTC
* * * *
5242000 CCATACACACCCAAATCACATAGCCATTAAAGCAAATAAACAATTTTCTTCGAAACATGCAAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAA
* *
5242065 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGAGCTAAAAATTT
66 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGACCTCAAAATTT
* * *
5242130 AACAGGTCAAAAAAGACTAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTT
131 ACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTT
5242195 CTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACC
196 CTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACC
* * * **
5242260 TCACGATCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTTGCCAAAGGTCAATCT-TCT
261 TCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTCT-T
* *
5242324 CAACTTGTACTATCTGAGTGGGATCAGAGCGATAA-ATCCTTAGTATCGAGACGTGAAGCACATC
325 CAACTTGTACTATCTGAGTGGGATCAGAGCGATAACATCCTTAGTATGGAGACGTGAAACACATC
* * * *
5242388 ATGAATTTGGTCTAA-TTCAGAGGAAACTCAAGTTAATAAGTGATCGGT-CCAATATGTTTCAGT
390 ATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACT-TGTTTCAGT
* * * *
5242451 ACACGGTAAGGTTTAATGAACCTACCCGTGGAAAAATAATCTCTTTGTG--AAAAAAAAAGTATT
454 ACACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTATT
*
5242514 AATATATAAAGGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAA
519 AATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAA
* *
5242579 AGGCCAGGACTTGAACCCAAGG-TTCTCAAACACTC
584 AGGCCAAGACTTGAACCC-CGGCTTCTCAAACACTC
* * * *
5242614 CCATAGACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTCCTTCAGAACATGCGAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAA
* * * * * *
5242679 TTAGAGACTTAAATTTTGGGGGGTTACAACTCTACCCCGTTAGTAAAATTTTGAGCTCGAAATTT
66 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGACCTCAAAATTT
* * * * *
5242744 ACCAGGTCAGAAAAGATGAGAGTATAACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTT
131 ACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTT
*
5242809 CTGAACT-TGATTACGCCAGAGCACTTTGACTAATGGAATAGATTTCTTCCTT-AGTAACTTAAC
196 CTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTT-CTTCAGTAACTTAAC
* * * *
5242872 CTTACGGTCCAAAATCTGCATTGGCTTCTCCTCTAGGGTCAGATCTGGCCTAACCTCAATCTCTT
260 CTCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTCTT
* * * *
5242937 CAACTGGTACTATGTGAGTGGGATCAGAGGGATAACA-CCTTA-TCATGGAGACATGAAACACAT
325 CAACTTGTACTATCTGAGTGGGATCAGAGCGATAACATCCTTAGT-ATGGAGACGTGAAACACAT
* * *
5243000 CATGAATCTGGTCTAACTTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCA
389 CATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCA
5243054 AACATCCCAA
Statistics
Matches: 1510, Mismatches: 145, Indels: 37
0.89 0.09 0.02
Matches are distributed among these distances:
612 1 0.00
613 173 0.11
614 317 0.21
615 9 0.01
616 86 0.06
617 283 0.19
618 636 0.42
619 5 0.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (618 bp):
CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAA
TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCTTTAATAAAATTTCGACCTCAAAATTT
ACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTT
CTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACC
TCACGGTCCAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTCTTC
AACTTGTACTATCTGAGTGGGATCAGAGCGATAACATCCTTAGTATGGAGACGTGAAACACATCA
TGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACTTGTTTCAGTAC
ACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTATTAA
TATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAG
GCCAAGACTTGAACCCCGGCTTCTCAAACACTC
Found at i:5243407 original size:375 final size:373
Alignment explanation
Indices: 5242689--5243428 Score: 1072
Period size: 375 Copynumber: 2.0 Consensus size: 373
5242679 TTAGAGACTT
* *
5242689 AAATTTTGGGGGGTTACAACTCTACCCCGTTAGTAAAATTTTGAGCTCGAAATTTACCAGGTCAG
1 AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCAG
*
5242754 AAAAGATGAGAGTATAACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTTCTGAACTTGA
66 AAAAGATGAGAGTATAACTGTCGCATCGCCTCTTCTGGTTCCCACGTGGCTTCTTCTGAACTTGA
* * * * * * *
5242819 TTACGCCAGAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTTACGGTCCAA
131 TTACGACAAAGAACTTTGACTAATGGAATAGATTCCTTCCTCAATAACTTAACCTCACGGTCCAA
* * * * * * *
5242884 AATCTGCATTGGCTTCTCCTCTAGGGTCAGATCTGGCCTAACCTCAATCTCTTCAACTGGTACTA
196 AATCTGCACTGGCATCTACTCAAGGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTACTA
* * *
5242949 TGTGAGTGGGATCAGAGGGATAACACCTTATCATGGAGACATGAAACACATCATGAATCTGGTCT
261 TGTGAGTGGGATCAAAGAGATAACACCTTAGCATGGAGACATGAAACACATCATGAATCTGGTCT
5243014 AACTTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACATCCC
326 AACTTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACATCCC
* * *
5243062 AAATTTTGGGGCGTTAGAAGTCTACCCCCTTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCA
1 AAATTTTGGGGCGTTACAACTCTA-CCCCGTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCA
* * ** *
5243127 GGAAAGATGAGGGTATTGCTGTCGCATCGCCTCTT-TGGGTTCCCACGTTGCTTCTTCTGAACTG
65 GAAAAGATGAGAGTATAACTGTCGCATCGCCTCTTCT-GGTTCCCACGTGGCTTCTTCTGAACT-
*
5243191 TGATTACGACAAAGAACTTTGACTAATGGAATAGATTCCTTCCTCAATACCTTAACCTCACGGTC
128 TGATTACGACAAAGAACTTTGACTAATGGAATAGATTCCTTCCTCAATAACTTAACCTCACGGTC
** *
5243256 CAAAATCTTTACTGGCATCTACTCAATGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTA
193 CAAAATCTGCACTGGCATCTACTCAAGGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTA
* ** *
5243321 CTATGTGAGTGGGATCAAAGAGATAA-AGCCTTAGCATGGTGATGTGAAACACATCATTAATCTG
258 CTATGTGAGTGGGATCAAAGAGATAACA-CCTTAGCATGGAGACATGAAACACATCATGAATCTG
* *
5243385 GTCTAA-TCTCAGAGGCAACTCAAGTTTATAAGCGCTCGGTCCCA
322 GTCTAACT-TCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCA
5243429 CACGTTGCAG
Statistics
Matches: 324, Mismatches: 38, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
373 22 0.07
374 95 0.29
375 207 0.64
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (373 bp):
AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTTGACCTCGAAATTTACCAGGTCAG
AAAAGATGAGAGTATAACTGTCGCATCGCCTCTTCTGGTTCCCACGTGGCTTCTTCTGAACTTGA
TTACGACAAAGAACTTTGACTAATGGAATAGATTCCTTCCTCAATAACTTAACCTCACGGTCCAA
AATCTGCACTGGCATCTACTCAAGGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTACTA
TGTGAGTGGGATCAAAGAGATAACACCTTAGCATGGAGACATGAAACACATCATGAATCTGGTCT
AACTTCAGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACATCCC
Found at i:5244688 original size:570 final size:562
Alignment explanation
Indices: 5243604--5244735 Score: 1506
Period size: 570 Copynumber: 2.0 Consensus size: 562
5243594 TCAAACACTC
* *
5243604 CCATGCACACCTAAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAAA
*
5243669 TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCATTTGGCAAAATTTTGACCTCAAAATT
66 TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCATTTGGCAAAATTTAGACCTCAAAATT
* * * * *
5243734 TACCAGGTCAGAAAAGATGAGGGTATTGCTGTCGCATCGCCTCTTCGGGTTCCCACATTGCTTCT
131 TACCAGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACATGGCTTCT
* **
5243799 TCTGAACAGTGATTACACTTTGACTAATGGAATAGATTTCTTTCTCAGTACCTTAACCCCACGGT
196 TCTCAACAGTGATTACACTTTGACTAATGGAATAGATTTCTACCTCAGTACCTTAACCCCACGGT
5243864 ACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCCAACTAGT
261 ACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCCAACTAGT
* * * * *
5243929 ACTCTGTGACTGGATCAGAGCGATAATGCCTTAGCATGGAGACGTGAAATACATCATGAATCTGG
326 ACTATGCGACCGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGG
* * *
5243994 TCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCCACATGTTTTAGTACACGGTAAGC
391 TCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTTCAGTACACGGTAAGC
** * * *
5244059 CCCAATGAACCTACCACTGGACTAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATATAAAC
456 CCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTAGTAATATATAAAA
* * *
5244124 GGCCTAGGTGCCAATGTCCAGATTCGTTTAAGA-AAAAACTA
521 GGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
* *
5244165 CCATACACACCCAAATCACTTAGCCATTAATGAA-AA-CAAGCAATTTGTGTCTAAACATGCAAA
1 CCATACACACCCAAATCACATAGCCATTAA--AACAATCAAGCAATTTGTGTCAAAACATGCAAA
* * * * * * * *
5244228 CATTAGATA-TGTAAATTTTGGGGCGTTACAACTTTACCCCCTTTAGG-AAAATTTCAG-CCTCG
64 AATGAGAGACT-TAAATTTTGGGACGCTACAACTCTACCCCATTT-GGCAAAATTT-AGACCTCA
* *
5244290 AAATTTACCTA-GTCAGAAAAGATGAGGCTATTACTGTCGTATCGCCTCATCAGGTTCCCACGTG
126 AAATTTACC-AGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACATG
* *
5244354 GCTTCTTCTCAACTGTTATTATGCCAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTAC
190 GCTTCTTCTCAACAGTGA-T-T-----A-CACTTTGACTAATGGAATAGATTTCTACCTCAGTAC
* * * * *** *
5244419 GTTAACCTCACGGTACAAAATCTGCACTGGCTTCTCCTTGAAGGTCAGATTTTGTCTAACCTCAA
247 CTTAACCCCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAA
** * * *
5244484 TCTCTTCAAC-AGTTACTATGCGACCGTGATCAGAGCGTTAACGTCTTAGCATGGAGACGTGAAG
312 TCTCCCCAACTAG-TACTATGCGACCG-GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAA
*
5244548 CACATCATGAATCTGGTCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCACATGTT
375 CACATCATGAATCTGGTCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTT
* *** *
5244613 TCAGTACATGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAA
440 TCAGTACACGGTAAGCCCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAACAA
* *
5244678 GTATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAAATTCATTTAAGAGAAAAACTA
505 GTAGTAATATATAAAAGGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
5244736 AAAATTCTGC
Statistics
Matches: 492, Mismatches: 62, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
560 1 0.00
561 169 0.34
562 7 0.01
563 3 0.01
568 3 0.01
569 109 0.22
570 192 0.39
571 8 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (562 bp):
CCATACACACCCAAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAAA
TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCATTTGGCAAAATTTAGACCTCAAAATT
TACCAGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACATGGCTTCT
TCTCAACAGTGATTACACTTTGACTAATGGAATAGATTTCTACCTCAGTACCTTAACCCCACGGT
ACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCCAACTAGT
ACTATGCGACCGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGG
TCAAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTTCAGTACACGGTAAGC
CCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTAGTAATATATAAAA
GGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
Found at i:5246221 original size:614 final size:613
Alignment explanation
Indices: 5245051--5246749 Score: 2611
Period size: 614 Copynumber: 2.8 Consensus size: 613
5245041 ACCTCATGGT
*
5245051 TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTATCC
1 TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
* * * *
5245116 ATTAAAGCAAAGAAGAAATTTTTTTCAAAACATGCAAAAATTAGAGACTTAAATTTTAGGGCGTT
66 ATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAATTA-AGACTTAAATTTTGGGGCGTT
* * * * **
5245181 ACAACTGTACCCCCTTTAAGAAAATTTCAACCTCAAAAAAATACCAGGTCAGAAAAGACGAGGGT
130 ACAACTATA-CCCCTTTAACAAAATTTCGAGCTC-AAAATTTACCAGGTCAGAAAAGACGAGGGT
* * *
5245246 ATTACTCTCACATCGCCTCTTCGGGTTCCCACGTGGCGTCTTCTGAACTGTGATTACGCCAAAGC
193 ATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGC
*
5245311 ACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTTCAAAATCTGCACTGG
258 ACTTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGG
*
5245376 CTTCTCCTTGAAGGTCAGATCTGGCCCAAGCTCAATCTTCTCAACTTGTACTATCTGAGTGGGAT
323 CTTCTCCTTGAAGGTCAGATCT-GCCCAAGCTCAATCTTCTCAACTTGTACTATATGAGTGGGAT
5245441 CAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGA
387 CAGAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGA
* *
5245506 AACTCAACTTAATAAGTGATCGGTCCCACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACC
452 AACTCAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACC
5245571 AGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGCCCAAGTGCCAGTGT
517 AGTGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGCCCAAGTGCCAGTGT
5245636 CAAGATTCATTTAAGAGAAAAACTAAAAATTC
582 CAAGATTCATTTAAGAGAAAAACTAAAAATTC
*
5245668 TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCAATACACACCCAAATCACTTAGCC
1 TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
5245733 ATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAATT-AGACTTAAATTTTGGGGCGTTA
66 ATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAATTAAGACTTAAATTTTGGGGCGTTA
*
5245797 CAACTATACGCCCTTTAACAAAATTTCGAGCTCAAAATTTACCAAGTCAGAAAAGACGAGGGTAT
131 CAACTATAC-CCCTTTAACAAAATTTCGAGCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTAT
* * * *
5245862 TACTGTTGCATCGCCTCTTCGGGTTCCCACATGGCTTCTTTTGAACTGTGATTACGCCAAAGGAC
195 TACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCAC
*
5245927 TTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCAGTGGCT
260 TTTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCT
* *
5245992 TCTCCTCGAAGGTCAGATCTGCCCAAAGCTCAATCTTCTCAACTTTTACTATATGAGTGGGATCA
325 TCTCCTTGAAGGTCAGATCTGCCC-AAGCTCAATCTTCTCAACTTGTACTATATGAGTGGGATCA
* * *
5246057 GAGCGATAAATCCTTAGTATCGAGACGTGAAGCACATCATGAATTTAGTCTAATTTCAGAGGAAA
389 GAGCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAA
* * *
5246122 CTCAAGTTAATAAGTGATCGGTCCAATATGTTTCAGTACACGGTAAGGTTTAATGAACCTACCCG
454 CTCAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAG
* * * *
5246187 TGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATATATAAAGGGCCTAAGTGCCAGTGTCC
519 TGGAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGCCCAAGTGCCAGTGTCA
*
5246252 AGATTCATTTAAGAGAAAAACTAAAAATTG
584 AGATTCATTTAAGAGAAAAACTAAAAATTC
* * * *
5246282 TACAAAGGCTAGGACTTGAACCCAAGG-TTCTCAAACACTCCCATACACACCCAAATCAATTAGC
1 TGCAAAGGCCAAGACTTGAACCC-AGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGC
*
5246346 CATTAAAGCAAACAAGCAA-TTTCATTCAAAACATGCGAAAATTAGAGACTTAAATTTTGGGGCG
65 CATTAAAGCAAACAAGCAATTTTC-TTCAAAACATGCAAAAATTA-AGACTTAAATTTTGGGGCG
* * ** * * * *
5246410 TTACAACTCTACCCCGTTAGTAAAATTTTGAGCTCGAAATTTACCAGGTCAGAAAAGATGAGAGT
128 TTACAACTATACCCCTTTAACAAAATTTCGAGCTCAAAATTTACCAGGTCAGAAAAGACGAGGGT
* * *
5246475 ATTACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTTCTGAACT-TGATTACGCCAACGC
193 ATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGC
* * *
5246539 ACTTTGACTAATGGAATAGATTTCTTCCTT-AGTAACTTAACCTTACGGTCCAAAATCCGCATTG
258 ACTTTGACTAATGGAATAGATTTCTT-CTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTG
* * * * * * *
5246603 GCTTCTCCTTTAAGGTCAGATCTGGCCTAACCTCAATCTCCTCCACTGGTACTATGTGAGTGGGA
322 GCTTCTCCTTGAAGGTCAGATCT-GCCCAAGCTCAATCTTCTCAACTTGTACTATATGAGTGGGA
* * *
5246668 TCAGAGGGATAACA-CCTTA-TCATGGAGACATGAAACACATCATGAATCTGGTCTAATTTCAGA
386 TCAGAGCGATAA-ATCCTTAGT-ATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGA
* *
5246731 GGCAACTCAAGTTTATAAG
449 GGAAACTCAAGTTAATAAG
5246750 CGATTAGTCC
Statistics
Matches: 992, Mismatches: 80, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
613 9 0.01
614 704 0.71
615 147 0.15
616 30 0.03
617 102 0.10
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (613 bp):
TGCAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCC
ATTAAAGCAAACAAGCAATTTTCTTCAAAACATGCAAAAATTAAGACTTAAATTTTGGGGCGTTA
CAACTATACCCCTTTAACAAAATTTCGAGCTCAAAATTTACCAGGTCAGAAAAGACGAGGGTATT
ACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAGCACT
TTGACTAATGGAATAGATTTCTTCTTCAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTT
CTCCTTGAAGGTCAGATCTGCCCAAGCTCAATCTTCTCAACTTGTACTATATGAGTGGGATCAGA
GCGATAAATCCTTAGTATGGAGACGTGAAGCACATCATGAATCTGGTCTAATTTCAGAGGAAACT
CAAGTTAATAAGTGATCGGTCCAACATGTTTCAGTACACGGTAAGGTTCAATGAACCTACCAGTG
GAAAAATAAGCTCTTTGTGTCAAAAAAAGTATTAATAGATAAAAGGCCCAAGTGCCAGTGTCAAG
ATTCATTTAAGAGAAAAACTAAAAATTC
Found at i:5247115 original size:375 final size:373
Alignment explanation
Indices: 5246397--5247126 Score: 1079
Period size: 375 Copynumber: 2.0 Consensus size: 373
5246387 TTAGAGACTT
* *
5246397 AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTTGAGCTCGAAATTTACCAGGTCAG
1 AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTTGACCTCAAAATTTACCAGGTCAG
*
5246462 AAAAGATGAGAGTATTACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTTCTGAACTTGA
66 AAAAGATGAGAGTATTACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTTCTAAACTTGA
* * * * *
5246527 TTACGCCAACGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAACCTTACGGTCCAA
131 TTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTCCAA
* * * * * * *
5246592 AATCCGCATTGGCTTCTCCTTTAAGGTCAGATCTGGCCTAACCTCAATCTCCTCCACTGGTACTA
196 AATCCGCACTGGCATCTACTTCAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTACTA
* * * *
5246657 TGTGAGTGGGATCAGAGGGATAACACCTTATCATGGAGACATGAAACACATCATGAATCTGGTCT
261 TGTGAGTGGGATAAAAGAGATAACACCTTAGCATGGAGACATGAAACACATCATGAATCTGGTCT
*
5246722 AATTTCAGAGGCAACTCAAGTTTATAAGCGATTAGTCCCAAACGTCCC
326 AATCTCAGAGGCAACTCAAGTTTATAAGCGATTAGTCCCAAACGTCCC
* *
5246770 AAATTTTGGGGCGTTACAACTCTACCCCCTTTAGTAAAATTTTGACCTCAAAATTTACCAGGTTA
1 AAATTTTGGGGCGTTACAACTCTA-CCCCGTTAGTAAAATTTTGACCTCAAAATTTACCAGGTCA
* * * *
5246835 GAAAAGATGAGGGTATTGCTGTCGTATCGCCTCTT-TGGGTTCCTACGTTGCTTCTTCTAAACTG
65 GAAAAGATGAGAGTATTACTGTCGCATCGCCTCTTCT-GGTTCCTACGTGGCTTCTTCTAAACT-
*
5246899 TGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATACCTTAACCTCACGGTC
128 TGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTC
* ***
5246964 TAAAATCTTTACTGGCATCTAC-TCAATGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGT
193 CAAAATCCGCACTGGCATCTACTTCAA-GGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGT
* ** *
5247028 ACTATGTGAGTGGGATAAAAGAGATAA-AGCCTTAGCATGGTGATGTGAAACACATCATTAATCT
257 ACTATGTGAGTGGGATAAAAGAGATAACA-CCTTAGCATGGAGACATGAAACACATCATGAATCT
5247092 GGTCTAATCTCAGAGGCAACTCAAGTTTATAAGCG
321 GGTCTAATCTCAGAGGCAACTCAAGTTTATAAGCG
5247127 CCCAGTCCCA
Statistics
Matches: 317, Mismatches: 35, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
373 25 0.08
374 96 0.30
375 196 0.62
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (373 bp):
AAATTTTGGGGCGTTACAACTCTACCCCGTTAGTAAAATTTTGACCTCAAAATTTACCAGGTCAG
AAAAGATGAGAGTATTACTGTCGCATCGCCTCTTCTGGTTCCTACGTGGCTTCTTCTAAACTTGA
TTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAATAACTTAACCTCACGGTCCAA
AATCCGCACTGGCATCTACTTCAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTAGTACTA
TGTGAGTGGGATAAAAGAGATAACACCTTAGCATGGAGACATGAAACACATCATGAATCTGGTCT
AATCTCAGAGGCAACTCAAGTTTATAAGCGATTAGTCCCAAACGTCCC
Found at i:5248387 original size:570 final size:563
Alignment explanation
Indices: 5247312--5248444 Score: 1451
Period size: 570 Copynumber: 2.0 Consensus size: 563
5247302 TCAAACACTC
* * * *
5247312 CCATACACATCTAAATCACATAGCCATTAAAACAGTCAAGCAATTTTTGTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACATAGCCATTAAAACAGACAAGCAATTTGTGTCAAAACATGCAAAAA
*
5247377 TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCCTTTGGCAAAATTTTGACCTCAAAATT
66 TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCCTTTGGCAAAATTTAGACCTCAAAATT
* * * * *
5247442 TACCAGGTCAGAAAAGATGAGGGTATTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTTGCTTCT
131 TACCAGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACGTGGCTTCT
* **
5247507 TCTGAACAGTGATTACACTTTGACTAATGGAATAGATTTCTTTCTCAGTACCTTAACCCCACGGT
196 TCTCAACAGTGATTACACTTTGACTAATGGAATAGATTTCTACCTCAGTACCTTAACCCCACGGT
* *
5247572 ACAAAATCTGCATTGGCTTCTCGTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCTAACTAGT
261 ACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCTAACTAGT
* * * *
5247637 ACTCTGTGACTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAATACATCATGAATCTG
326 ACTATGCGACCGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTG
* * *
5247702 GTCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCCACATGTTTTAGTACACGGTAAG
391 GTCGAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTTCAGTACACGGTAAG
* ** * *
5247767 CCCCGATGAACCTACCACTGGACTAATAGGCTCTTTGTGTCATTAAACAAGTAGTAATATATA-A
456 CCCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTAGTAATATATACA
* * *
5247831 ACGGCCTAGGTGCCAATGTCCAGATTCGTTTAAGA-AAAAACTA
521 A-GGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
* *
5247874 CCATACACACCCAAATCACTTAGCCATTAATGAA-A-ACAAGCAATTTGTGTCTAAACATGCAAA
1 CCATACACACCCAAATCACATAGCCATTAA--AACAGACAAGCAATTTGTGTCAAAACATGCAAA
* * * * * * *
5247937 CATTAGATA-TGTAAATTTTGGGGCGTTACAACTTTACCCCCTTTAGG-AAAATTTCAG-CCTCG
64 AATGAGAGACT-TAAATTTTGGGACGCTACAACTCTACCCCCTTT-GGCAAAATTT-AGACCTCA
*
5247999 AAATTTACCTA-GTCAGAAAAGATGAGGCTATTACTGTCGTATCGCCTCATCAGGTTCCCACGTG
126 AAATTTACC-AGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACGTG
* *
5248063 GCTTCTTCTCAACTGTTATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGTAC
190 GCTTCTTCTCAACAGTGATT-------A-CACTTTGACTAATGGAATAGATTTCTACCTCAGTAC
* * * * ** *
5248128 GTTAACCTCACGGTACAAAATCTGCACTGGCTTTTCCTCGAAGGTCAGATTTGGTCTAACCTCAA
247 CTTAACCCCACGGTACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAA
* * **
5248193 TCT-CTTCAAC-AGTTACTATGCGACCGTGATCAGAGC-ATTAACGTTTTAGCATGGAGACGTGA
312 TCTCCCT-AACTAG-TACTATGCGACCGGGATCAGAGCGA-TAACGCCTTAGCATGGAGACGTGA
* * **
5248255 AGCACATCATGAATCTGGTCGAATTTCAGAGGAAACTCAAGTTTATAAGTGATTGGTCCCACATG
374 AACACATCATGAATCTGGTCGAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATG
* *** *
5248320 TTTCAGTACATGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAAC
439 TTTCAGTACACGGTAAGCCCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAAC
* *
5248385 AAGTATTAATATATACAAGGCCTAAGTGCCAGTGTCCAAATTCATTTAAGAGAAAAACTA
504 AAGTAGTAATATATACAAGGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
5248445 AAAATTCTGC
Statistics
Matches: 488, Mismatches: 64, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
561 1 0.00
562 172 0.35
563 5 0.01
564 2 0.00
569 6 0.01
570 292 0.60
571 10 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (563 bp):
CCATACACACCCAAATCACATAGCCATTAAAACAGACAAGCAATTTGTGTCAAAACATGCAAAAA
TGAGAGACTTAAATTTTGGGACGCTACAACTCTACCCCCTTTGGCAAAATTTAGACCTCAAAATT
TACCAGGTCAGAAAAGATGAGGCTATTACTGTCGCATCGCCTCATCAGGTTCCCACGTGGCTTCT
TCTCAACAGTGATTACACTTTGACTAATGGAATAGATTTCTACCTCAGTACCTTAACCCCACGGT
ACAAAATCTGCACTGGCTTCTCCTCGAAGGTAAGATCCGGCCTAACCTCAATCTCCCTAACTAGT
ACTATGCGACCGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTG
GTCGAATTTCAGAGGAAACTCAAGTTTATAAGCGATCAGTCCCACATGTTTCAGTACACGGTAAG
CCCCAATGAACCTACCACTGGAAAAATAAGCTCTTTGTGTCATAAAACAAGTAGTAATATATACA
AGGCCTAAGTGCCAATGTCCAAATTCATTTAAGAGAAAAACTA
Found at i:5249727 original size:617 final size:618
Alignment explanation
Indices: 5247874--5253216 Score: 7021
Period size: 616 Copynumber: 8.7 Consensus size: 618
5247864 GAAAAAACTA
* * * *
5247874 CCATACACACCCAAATCACTTAGCCATTAATGAAAACAAGCAATTTGTGTCTAAACATGCAAACA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * ** *
5247939 TTAGATA-TGTAAATTTTGGGGCGTTACAACTTTACCCCCTTTAGGAAAATTTC-AGCCTCGAAA
66 TTAGAGACT-TAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAG-CTAGAAA
* * * *
5248002 TTTACCTA-GTCAGAAAAGATGAGGCTATTACTGTCGTATCGCCTCATCAGGTTCCCACGTGGCT
129 TTTACC-AGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCT
* * * *
5248066 TCTTCTCAACTGTTATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTACCTCAGT-ACGT
193 TCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAAC-T
* * * * *
5248130 TAACCTCACGGTACAAAATCTGCACTGGCTTTTCCTCGAAGGTCAGATTTGGTCTAACCTCAATC
257 TAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATC
* * ** * ** *
5248195 TCTTCAAC-AGTTACTATGCGACCGTGATCAGAGC-ATTAACGTTTTAGCATGGAGACGTGAAGC
322 TCCTCAACTAG-TACTATGTGAGTGGGATCAGAGCGA-TAACGCCTTAGCATGGAGACGTGAAAC
* * * * * *
5248258 ACATCATGAATCTGGTCGAATTTCAGAGGAAACTCAAGTTTATAAGTGATTGGTCCCACATGTTT
385 ACATCATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTG
* * * **
5248323 CAGTACATGGTAAGGTTCAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGTCATAAAACAAG
450 CAGTACACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAG
* * *
5248388 TATTAATATATACAAGGCCTAAGTGCCAGTGTCCAAATTCATTTAAGAGAAAAACTAAAAATTCT
515 TATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGT
* *
5248453 GCAAAGGCCAAGACTTAAACTCC-GACTTCTCAAACACTC
580 GCAAAGGCCAAGACTTGAAC-CCAGGCTTCTCAAACACTC
* * * *
5248492 CCACAGACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTTTTTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * *
5248557 TTAGAGATTTAAATTTTGGGGCGTTACAACTCCACCCCCTTTAACAAAATTTCGACCTCA-AAAT
66 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAGCT-AGAAAT
* * *
5248621 TTACCAGGTCAGAAGAGACGAGGGTATTACTGTCGCATTGCCTCTTCGGGTTCCCACGTGGCTTC
130 TTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTC
* **
5248686 TTCTGAACTGTGATTACGCCAAAGAACTTTTCCTAATGGAATAGATTTCTT-CTTCAGTAACTTA
195 TTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTT-AGTAACTTA
* * * * * *
5248750 ACCTCATGGTCGAAAATCTGCACTGGCTTCTCCTCGAAGGTCAGATCTGGCCCAAGCTCAATCTT
259 ACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTC
* * * * * * * * *
5248815 TTCAACTTGTACTATCTGAGTGGGATCAGACCGA-AA-TCCTTAGTATGGACACGTGTAGCACAT
324 CTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACAT
* * ** *
5248878 CATGAATCTGGTCTAATTTTAGAGG-AAGCTCATGTTTATAAGCGATCGGTCCCACTTGTTTCAG
389 CATGAATCTGGTCTAATTTCAGAGGCAA-CTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAG
* * * ** *
5248942 TACACGGTAAGGTTTAATGAACCTACCAGTGGAAAAATAAGCTCTTTGTGCCATAAAACAAGTAT
453 TACACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTAT
* *
5249007 TAATATGTAAAAGGCCTAAGTGCCAGTGTCTAGATTCATTTAAGAGAAAAACTAAAAATTGTGCA
518 TAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCA
*
5249072 AAGGCCAAGACTTGAACCCCGGCTTCTCAAACACTC
583 AAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
* * * * *
5249108 CCATACACACCCAAATCACATAGCCATTAAAGCAAATAAACAATTT-TCTTCAAAACATGTAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGT-GTCAAAACATGCAAAA
* *
5249172 ATTAGAGACTTAAATTTTGGGGCCTTACAACTCTA-CCCCTTTAATAAAATTTCGAGCTAGAAAT
65 ATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAGCTAGAAAT
* * *
5249236 TTACCAGGTCAAAAAAGACT-AGGGTATTACTGTCGCATCGCCTCTTCGAGTTCCCACGTGGGTT
130 TTACCAGGTCAGAAAAGA-TGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTT
* * *
5249300 CTTCTGAACTGTGATTACGCCAAATCACTTTGACTAAAGGAATAGATTTCTTTCTTAGTAACTTA
194 CTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTA
* * * * *
5249365 ACCTCACGGTCCAAAATCCGCATTGGCTTCTCCTCTAAGGTCAGATCTTGCCTAACCTCAACCTC
259 ACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTC
*
5249430 CTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACATGAAACACAT
324 CTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACAT
* * * * * *
5249495 CATGAATCTGGTCTAATTTTAGAGGCAACTCAGGTTTATAAGCGATCAGTCCCAAATGTTACAGT
389 CATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAGT
* * * * * *
5249560 ACACAGTAAGCTTCAATGCACTTACAACTGGACCAATAAGCCCTTTGTGTCATAAAGCAAGTATT
454 ACACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTATT
*
5249625 AATATCTAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAA
519 AATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAA
*
5249690 AGGCCAAGAATTGAACCCAGGCTTCTCAAACACTC
584 AGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
* *
5249725 CCATACACACCCAAATCACTTAGCCATTAAACCAAACAAGCAATTT-TCTTCAAAACATGCAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGT-GTCAAAACATGCAAAA
* * *
5249789 ATTAGAGCCTTAAATTTTGGGGCATTACAACTCTA-CCCCTTTAACAAAATTTCGAGCTTGAAAT
65 ATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAGCTAGAAAT
** * * *
5249853 TTACCAAATCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTTTTCGGGTTCCCCCGTGGCTTA
130 TTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTC
*
5249918 TTCTGAACTG-GATTACGCCAAAGAACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAA
195 TTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAA
* * ** * *
5249982 CCTCACAGCCCAAAATCCACATTGGCTTCTCCTCTAAGGTCAGATCTGGCCTAACCTCAATCTCC
260 CCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTCC
* * * *
5250047 TCAACTGGTACTATGTGAGTGGGAACAGAGCGATAACGCCTTAGCATGGAAACATGAAACACATC
325 TCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATC
* * * *
5250112 ATGAATCTGGTCTAATTTCCGAGGCAACTCAAGTTTATAAGCGATCAGTCCCAAACGTTGTAGTA
390 ATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAGTA
* * * * * *
5250177 CACAGTAAGGC-CCAATGAACCTACCACTGGACCAATAGGCTCTTTGCGTCATAAACCAAGTACT
455 CACGGTAA-GCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTATT
* * * *
5250241 AATATATAAAAGGCCTAAGTGCCAGTGTCTAGATTCATTTAGGAGCAAAACTAAAAATTGTGCCA
519 AATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAA
*
5250306 AGGCCAAGACTTGAACCCAGGCTTCTCAAACAATC
584 AGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
* * *
5250341 CCATACACACCCAAATCACATAGCCATTAAAACAATCAAGCAATTTGTGTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * *
5250406 TGAGAGACTTAAATTTT-GGGCTGCTACAACTTTA-CCCCTTTAGA-AAAATTTCGAGCTCA-AA
66 TTAGAGACTTAAATTTTGGGGC-GTTACAACTCTACCCCCTTTA-ACAAAATTTCGAGCT-AGAA
* *
5250467 ATTTACCAGGTCAGAAAAGACGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTTGCT
128 ATTTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCT
* * *
5250532 TCTTCTGAACTGTGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTT
193 TCTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTT
* * * * *
5250597 AACCTCATGGTCCAAAATCTGTACTGGCATATACTCAAAGGTCAGATCTGGCCTAACCTCAATCT
258 AACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCT
* * * *
5250662 CCTCAACTAGTACTATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGATGTGAAACACA
323 CCTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACA
* * * * * *
5250727 TCATGAATTTGTTCTAATCTCAGAGGCAACTCAAGTTTATATGTGACCGGTCCCACACGTTGCAG
388 TCATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAG
* *
5250792 TACACGGTAAGGC-CCAATGAACCTACCACTGGACCAAT-GGCTCTTTGTGTCATAAAACAAGTA
453 TACACGGTAA-GCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTA
* * * *
5250855 TTAATCTATAAAACGCCTATGTGCCAGTGTCTAGATTCATTTAAGAGAAAAACTAAAAATTGTGC
517 TTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGC
*
5250920 CAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
582 AAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
* * * * *
5250957 CCATACACACCTAAATCACTTAGCCATTAAACCACACAAGCAATTTGTGTCTAAACATGCAAACA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * ** *
5251022 TTAGAGACTTAAATTTTGGGGCGTTACAACACTACCCCCTTTTAGGAAATTTTG-GCCTAGAAAT
66 TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAG-CTAGAAAT
* * ** * *
5251086 TTACCTGGTCA-AAAATGATGAGGCTATTGTTGTCGCATCGCCCCCTCGGGTTCCCACGTGGCTT
130 TTACCAGGTCAGAAAA-GATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTT
* * * *
5251150 CTTCTGAACTACT-ATTACGCCAAAGTACTTTGACTAATGGAATAGATTTGTTCCTCT-GTACCT
194 CTTCTGAACT-GTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCT-TAGTAACT
* * * * * * *
5251213 TAACCTTACGGTACAAAATCTGCACTGGCTCCTCCTAAAAGGTCAGATTTGGTCAAACCTCAATC
257 TAACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATC
* * * * * *
5251278 TCTTCAAC-AGGTACTACGTGTGCGTGATCAGAGCGATAACGCCTTAGCATTGAGACGTGAAACA
322 TCCTCAACTA-GTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACA
* *** *
5251342 CATCATGAATCTGGTCTAATTTCAGAGGAAACTCAAGTTTATAAGCGATCGGTCCCATGTGTTTC
386 CATCATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGC
* * * ** *
5251407 AGTACACGGTAAGGTTCAATGAACCTACCAGTTGAAAAATAAGCTCTTTGTGTCACAAAACAAGT
451 AGTACACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGT
5251472 ATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTG
516 ATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTG
*
5251537 CAAAGGCCAAGACTTGAACCTC-GACTTCTCAAACACTC
581 CAAAGGCCAAGACTTGAACC-CAGGCTTCTCAAACACTC
* * * * *
5251575 CCACAGACACCCAAATCACTTAGCCATTAAAGCAGACAAGCAATTT-TCTTCAAAACATACAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGT-GTCAAAACATGCAAAA
* * **
5251639 ATTAGAGCCTTAAATTTTGGGGCGTTACAACTCTA-CCCCTTTAACAAAATTTTGAGCTTTAAAT
65 ATTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAGCTAGAAAT
*
5251703 TTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCACCTCTTCGGGTTCCCACGTGGCTTC
130 TTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTC
5251768 TTCTGAACT-TGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAA
195 TTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAA
* * * *
5251832 CCTCACGGTCCAAAATCCGCATTGGCTTCTCCTCTAAGGTCGGATCTGGCCTAACCTCAATCTCC
260 CCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTCC
* * *
5251897 TCAACTGGTACTACGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACATGAAACACATC
325 TCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATC
* * * * *
5251962 ATGAATCTGGTCTAATTTTAGAGGCAACTCAAGTTTATAAGCGGTCAGTCCCAAACGTTGTAGTA
390 ATGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAGTA
* * * *
5252027 CACAGTAAGCTTCAATGCACCTACAACTGGACCAATAAGCTCTTTGTGTCATAAAGCAAGTATTA
455 CACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTATTA
* *
5252092 ATATATAAAACGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAGAATTGTGCAAA
520 ATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAA
*
5252157 GGCTAAGACTTGAACCCAGGCTTCTCAAACACTC
585 GGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
5252191 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * * * * * *
5252256 TGACATACTTAAATTTT-GGGC-TACTACAACTCTACCCCCTTTAGCAAAATTTTGACCTCGAAA
66 TTAGAGACTTAAATTTTGGGGCGT--TACAACTCTACCCCCTTTAACAAAATTTCGAGCTAGAAA
* * * * *
5252319 TTTACCAGGTCAGAAAAGATGAGGGTATTGCTGCCGCATCCCCTCTTTGGGTTCCCACGTTGCTT
129 TTTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTT
* * *
5252384 CTTCTGAACTGTGATTACGACAAAGCACTTTGACTAATGGAATAGATTTCTTCCTCAGTACCTTA
194 CTTCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTA
* * * * * * *
5252449 ACCTCATGATCCAAAATCTGTACTGGCATATACTCAAAGGTCAGATCTAGCCTAACCTCAATCTC
259 ACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTC
* * * *
5252514 CTCAACTAGTACTATGTGAGTGGGATCAAAGAGATAAAGCCTTAGCATGGAGATGTGAAACACAT
324 CTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACAT
* * *
5252579 CATGAATTTGGTCTAATCTT-AGAGGTAACTCAAGTTTATATGCGATCGGTCCCACACGTTGCAG
389 CATGAATCTGGTCTAAT-TTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAG
* * * *
5252643 TACACGGTAAGGC-CCAATGAACCTACCACTGGACCAAT-GGCTTTTTTGTGTCATAAAACATGT
453 TACACGGTAA-GCTTCAATGAACCTACCACTGGACCAATAAGC-TCTTTGTGTCATAAAACAAGT
* * *
5252706 ATTAATCTATAAAACGCCTATGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTG
516 ATTAATATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTG
* * *
5252771 CCAAGGCCAAAACTTGAACCCAGGCTTCTCAAACAGTC
581 CAAAGGCCAAGACTTGAACCCAGGCTTCTCAAACACTC
* * * * * *
5252809 CCATACACACCTAAATCACTTAGCTATTAAACCAAACAAGTAATTTGTGTCTAAACATGCAAACA
1 CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
* * * **
5252874 CTAGAGACTTAAATTTTGAGGCGTTACAACAT-GACCCCCTTTAAGGAAATTTCG-GCCTAGAAA
66 TTAGAGACTTAAATTTTGGGGCGTTACAAC-TCTACCCCCTTTAACAAAATTTCGAG-CTAGAAA
* * * ** * *
5252937 TTTACCTGGTCAGAAATGATGAGGCTATTGTTGTCGCATC-CCCCCTCGGGTTCCCACGTGGCTT
129 TTTACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTT
* * * * * *
5253001 CTTCTGAACTACT-ATTACGCCAAAGTACTTTAACTAATGGAATAGATTTGTTCCTCAGTACCTT
194 CTTCTGAACT-GTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTT
* * ** * * * *
5253065 AACCCCACTGTAAAAAATCTGCACTGGCTTCTCCCCGAAGGTAAGATCTGGCCGAACCTCAATCT
258 AACCTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCT
* ** * *
5253130 CCCCATGTATTACTATGTGAGTGGGATCAGAACG-TAACGCCTTAGCATGGAGACGTGAAACACA
323 CCTCAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACA
5253194 TCATGAATCTGGTCTAATTTCAG
388 TCATGAATCTGGTCTAATTTCAG
5253217 GGGGTATTAT
Statistics
Matches: 4168, Mismatches: 500, Indels: 116
0.87 0.10 0.02
Matches are distributed among these distances:
614 2 0.00
615 241 0.06
616 1576 0.38
617 1328 0.32
618 1005 0.24
619 15 0.00
620 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (618 bp):
CCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAA
TTAGAGACTTAAATTTTGGGGCGTTACAACTCTACCCCCTTTAACAAAATTTCGAGCTAGAAATT
TACCAGGTCAGAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCTTCT
TCTGAACTGTGATTACGCCAAAGCACTTTGACTAATGGAATAGATTTCTTCCTTAGTAACTTAAC
CTCACGGTCCAAAATCTGCACTGGCTTCTCCTCAAAGGTCAGATCTGGCCTAACCTCAATCTCCT
CAACTAGTACTATGTGAGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCA
TGAATCTGGTCTAATTTCAGAGGCAACTCAAGTTTATAAGCGATCGGTCCCACACGTTGCAGTAC
ACGGTAAGCTTCAATGAACCTACCACTGGACCAATAAGCTCTTTGTGTCATAAAACAAGTATTAA
TATATAAAAGGCCTAAGTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAG
GCCAAGACTTGAACCCAGGCTTCTCAAACACTC
Found at i:5255033 original size:540 final size:540
Alignment explanation
Indices: 5254007--5255087 Score: 1668
Period size: 540 Copynumber: 2.0 Consensus size: 540
5253997 TCTCCTCAAT
* *
5254007 TGGTACTATGTGAGTGGGATCAGAGTGATAACGCGTTAGCCTGGAGACATGAAACACATCATGAA
1 TGGTACTATGTGAGTGGGATCAGAGTGATAACGCCTTAGCATGGAGACATGAAACACATCATGAA
* * *
5254072 TCTGGTCTAATTTTAGAGGAAACTCAAGTTTATATGCGATCAGTCCCACATGTTGCAGTACACAG
66 TCTGGTCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCAACACGTTGCAGTACACAG
5254137 AAAGGCCCAATGAACCTACCACTAGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATCAA
131 AAAGGCCCAATGAACCTACCACTAGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATCAA
* *
5254202 TAAAACACCTATGTGCCAGTGTCAAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCA
196 TAAAACACCTAAGTGCCAATGTCAAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCA
* **
5254267 AGACCTGAACCCAGGCTTCTCAAACACTCCCCTACACACTGAAATCACTTAGCCAATTAAGCAAA
261 AGACCTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCAATTAAGCAAA
* ** *
5254332 CAAGCAATTTCTGTCAAAACATGCAAAAATTAGTGACTTAAATTTGGGGGTGTTACAACTCTACC
326 CAAACAATTTCTGTCAAAACATGCAAAAATTAGAAACTTAAATTTGGGGGCGTTACAACTCTACC
* * *
5254397 CCCATTAACAAAATTTCAACCTCAAAATTTACATGGTTAGAAAGGGTGAGGGTATTGCTATCGCA
391 CCCATTAACAAAATTTCAACCTCAAAATTTACATGGTTAGAAAAGATGAGGGTATTGCTATCCCA
*
5254462 TCGCCTCTTCAGGTTCCCATGTGGCTTCTTCTAAACTGTGATTACGCCAAAGCACTTTGACTAAT
456 TCGCCTCTTCAGGTTCCCACGTGGCTTCTTCTAAACTGTGATTACGCCAAAGCACTTTGACTAAT
5254527 GGAATAGATTTCTTCCTTAG
521 GGAATAGATTTCTTCCTTAG
* * * *
5254547 TGGTAGTATGTGAGTGGGATCAGAGTGATAATGCCTTAGCATGGGGACGTGAAACACATCATGAA
1 TGGTACTATGTGAGTGGGATCAGAGTGATAACGCCTTAGCATGGAGACATGAAACACATCATGAA
* ** *
5254612 TCTGGT-TAAATTTCAGAGGCAACTCAAGTTTATATGCGATTGGTCCAACACGTTGCAGTACACG
66 TCTGGTCT-AATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCAACACGTTGCAGTACACA
* * *
5254676 GTAAGGCCCAATGAATCTACCACT-GAACCAATAGGCTCTTTGTGTTATAAAACAAGTATTAAT-
130 GAAAGGCCCAATGAACCTACCACTAG-ACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATC
** * * *
5254739 ATATAAAAGGCCTAAGTGTCAATGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGG
194 A-ATAAAACACCTAAGTGCCAATGTCAAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGG
* *
5254804 CCAAGACTTGAACCCAGGCTTCTCAAACACTCTCATACACACCCAAATCACTTAGCC-ATTAAAG
258 CCAAGACCTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCAATT-AAG
* * * **
5254868 CAAACAAACAATTTGTGTCTAAACATGCAAAAATTAGAAACTTAAATTTTGGGGCGTTGGAACTC
322 CAAACAAACAATTTCTGTCAAAACATGCAAAAATTAGAAACTTAAATTTGGGGGCGTTACAACTC
* * * *
5254933 TACCCCCTTTAACAAAATTTCAACCTCGAAATTTACCTGGTTAGAAAAGATGAGGGTATTGCTGT
387 TACCCCCATTAACAAAATTTCAACCTCAAAATTTACATGGTTAGAAAAGATGAGGGTATTGCTAT
*
5254998 CCCATCGCCTCTTC-GGTTTCCCACGTGGGTTCTTCTAAACTGTGATTACGCCAAAGCACTTTGA
452 CCCATCGCCTCTTCAGG-TTCCCACGTGGCTTCTTCTAAACTGTGATTACGCCAAAGCACTTTGA
5255062 CTAATGGAATAGATTTCTTCCTTAG
516 CTAATGGAATAGATTTCTTCCTTAG
5255087 T
1 T
5255088 AACTTAACCC
Statistics
Matches: 490, Mismatches: 46, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
539 8 0.02
540 482 0.98
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (540 bp):
TGGTACTATGTGAGTGGGATCAGAGTGATAACGCCTTAGCATGGAGACATGAAACACATCATGAA
TCTGGTCTAATTTCAGAGGAAACTCAAGTTTATATGCGATCAGTCCAACACGTTGCAGTACACAG
AAAGGCCCAATGAACCTACCACTAGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATCAA
TAAAACACCTAAGTGCCAATGTCAAGATTCATTTAAGAGAAAAACTAAAAATTGTGCAAAGGCCA
AGACCTGAACCCAGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCAATTAAGCAAA
CAAACAATTTCTGTCAAAACATGCAAAAATTAGAAACTTAAATTTGGGGGCGTTACAACTCTACC
CCCATTAACAAAATTTCAACCTCAAAATTTACATGGTTAGAAAAGATGAGGGTATTGCTATCCCA
TCGCCTCTTCAGGTTCCCACGTGGCTTCTTCTAAACTGTGATTACGCCAAAGCACTTTGACTAAT
GGAATAGATTTCTTCCTTAG
Found at i:5256735 original size:619 final size:619
Alignment explanation
Indices: 5255554--5256741 Score: 2029
Period size: 619 Copynumber: 1.9 Consensus size: 619
5255544 TACAACTCGA
* * *
5255554 CCTCGAAATTTAACTGGTCAGAAAGGATGAGGGTATTATTGTCGCATCGCCTCTTCGGGTTGCCA
1 CCTCGAAATTTAACTGGTCAAAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTGCCA
5255619 CGTGGCTTATTCTGAACTATGATTACGCAAAAGCAAGTTTCACTAACAGAACAGATTTCTTCCTC
66 CGTGGCTTATTCTGAACTATGATTACGCAAAAGCAAGTTTCACTAACAGAACAGATTTCTTCCTC
*
5255684 AGTAACTTAACCTCATGGTCCAAAATCTGCACTGGCTTCACGTCGAAGGTCAGATCTGGCCTAAC
131 AGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCACGTCGAAGGTCAGATCTGGCCTAAC
* * *
5255749 CTCAATCTCCTTAACCGGTACTATGTGAGTGGGATTAGAGCGATAACGCCTTAGCATGGAGACGT
196 CTCAATCTCCTTAACCAGTACTATGCGAGTGGGATTAGAGCAATAACGCCTTAGCATGGAGACGT
*
5255814 GAAACAAATCATGAATCTGGTCTAATTTCAGAGAAAACTCTAGTTTATATGCGATCAGTCCCACA
261 GAAACAAATCATGAATCTGGTCTAATTTCAGAGAAAACTCTAGTTTAAATGCGATCAGTCCCACA
5255879 CGTTGCAGTACACGGTAAGACCCAATCAACCTACCACTTGACCAATAGGCTCTTTGTGTCATAAA
326 CGTTGCAGTACACGGTAAGACCCAATCAACCTACCACTTGACCAATAGGCTCTTTGTGTCATAAA
5255944 ACAAGTATTAATATATAAAAAACCTAAGTGCCAGTGTCCAGATTCATTTAAAAGAAAAACTAAAA
391 ACAAGTATTAATATATAAAAAACCTAAGTGCCAGTGTCCAGATTCATTTAAAAGAAAAACTAAAA
* * * ** *
5256009 ATTGTGCCAAGGCCAGGACTTGAACCGAGGCTTCTTGAACACTACCATACACACCCAAATCACTT
456 ATTGAGCCAAGGCCACGACTTGAACCAAGGCTTCTCCAACACTACCACACACACCCAAATCACTT
* *
5256074 AGCCATTAAAGCAAATAAGCAATTTGTGTCAAAACCTGCAAAAATTAGAGACTTAAATATTGGGG
521 AGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAATTAGAGACTTAAATATTGGGG
5256139 CGTTACAACTCTACCCCCTTTAACAAAATTTCAG
586 CGTTACAACTCTACCCCCTTTAACAAAATTTCAG
* *
5256173 CCTCGAAATTTACCTGGTCAAAAAAGATGAGGGTATTCCTGTCGCATCGCCTCTTCGGGTTGCCA
1 CCTCGAAATTTAACTGGTCAAAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTGCCA
* * ** ** *
5256238 CGTGGCTTATTTTGAACTGTGATTACGCCAAAA-CACTTTTCACTAATGGAATAGATTTCTTCCT
66 CGTGGCTTATTCTGAACTATGATTACG-CAAAAGCAAGTTTCACTAACAGAACAGATTTCTTCCT
* *
5256302 CAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCTCGTCGATGGTCAGATCTGGCCTAA
130 CAGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCACGTCGAAGGTCAGATCTGGCCTAA
5256367 CCTCAATCTCCTTAACCAGTACTATGCGAGTGGGATTAGAGCAATAACGCCTT-GTCATGGAGAC
195 CCTCAATCTCCTTAACCAGTACTATGCGAGTGGGATTAGAGCAATAACGCCTTAG-CATGGAGAC
* * *
5256431 GTGAAACACATCATGAATCTGGTCTAATTTCAGAGAAAGCTCTAGTTTAAATGCGATCATTCCCA
259 GTGAAACAAATCATGAATCTGGTCTAATTTCAGAGAAAACTCTAGTTTAAATGCGATCAGTCCCA
*
5256496 CACGTTGCAGTACACGGTAGGACCCAATCAACCTACCACTTGACCAATAGGCTCTTTGTGTCATA
324 CACGTTGCAGTACACGGTAAGACCCAATCAACCTACCACTTGACCAATAGGCTCTTTGTGTCATA
* * *
5256561 AAACAAGTATTAATATATAAAAAACCTCAGTGCCAGTGTCCATATTCATTTAAGAGAAAAACTAA
389 AAACAAGTATTAATATATAAAAAACCTAAGTGCCAGTGTCCAGATTCATTTAAAAGAAAAACTAA
*
5256626 AAATTGAGCCAAGGCCACGACTTGAACCAAGGCTTCTCCAACACTCCCACACACACCCAAATCAC
454 AAATTGAGCCAAGGCCACGACTTGAACCAAGGCTTCTCCAACACTACCACACACACCCAAATCAC
5256691 TTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAATTAGA
519 TTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAATTAGA
5256742 AACCATCTCA
Statistics
Matches: 532, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
618 1 0.00
619 526 0.99
620 5 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (619 bp):
CCTCGAAATTTAACTGGTCAAAAAAGATGAGGGTATTACTGTCGCATCGCCTCTTCGGGTTGCCA
CGTGGCTTATTCTGAACTATGATTACGCAAAAGCAAGTTTCACTAACAGAACAGATTTCTTCCTC
AGTAACTTAACCTCACGGTCCAAAATCTGCACTGGCTTCACGTCGAAGGTCAGATCTGGCCTAAC
CTCAATCTCCTTAACCAGTACTATGCGAGTGGGATTAGAGCAATAACGCCTTAGCATGGAGACGT
GAAACAAATCATGAATCTGGTCTAATTTCAGAGAAAACTCTAGTTTAAATGCGATCAGTCCCACA
CGTTGCAGTACACGGTAAGACCCAATCAACCTACCACTTGACCAATAGGCTCTTTGTGTCATAAA
ACAAGTATTAATATATAAAAAACCTAAGTGCCAGTGTCCAGATTCATTTAAAAGAAAAACTAAAA
ATTGAGCCAAGGCCACGACTTGAACCAAGGCTTCTCCAACACTACCACACACACCCAAATCACTT
AGCCATTAAAGCAAACAAGCAATTTGTGTCAAAACATGCAAAAATTAGAGACTTAAATATTGGGG
CGTTACAACTCTACCCCCTTTAACAAAATTTCAG
Found at i:5258683 original size:617 final size:616
Alignment explanation
Indices: 5257064--5270190 Score: 9771
Period size: 617 Copynumber: 21.0 Consensus size: 616
5257054 CAATGCGGCG
* * * * *
5257064 TTACAACTCTACCCCGTTTAAAAAAATTTTAGCCTCGAAATTTACCTGGTCAAAAAAGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * * * *
5257129 TATTCCTGTCGCATCGCCTCTTCGGGTTGCCACGTGGCTTATTCTGAACTGTGATTACGCCAAAA
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACG-CAAAA
* * * ** *
5257194 -CACTTTTCACTAATGGAATAGATTTCTTCCTCAGTAACTTAACCTCACGGTCCAAAATTTGCAT
130 GCAC-TTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCAC
* * * * * *
5257258 TGGCTTCTCGTCGATGGTCAGATCTGGCCTAACCTCAATCTCCTTAACCGGTACTATGTGAGTGG
193 TAGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGG
* *
5257323 GATTAGAGCGATAACGCCTTATCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
258 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
* * *
5257388 -GAAAGCTCTAGTTTA-AATGCGATCATTCCCACACGTTGCAGTACACGGT-AGGACCCAATCAA
323 GGAAA-CCCTAGTTTATAA-GCGATCAGTCCCACACGTTGCAGTACACGGTAAGG-CCCAATGAA
* ** *
5257450 CCTACCACTTGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAAACCTCAGT
385 CCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGT
* * *
5257515 GCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGAGCCAAGGCCATGACTTGAACCAAG
450 GCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAG
* * * *
5257580 GCTTCTCCAACACTCCCACACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTAGTGT
515 GCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGT
* * * *
5257645 CAAAACATGCAAAAATTAGAAATTTAAGTTTTGGGGCG
580 CAAAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * *
5257683 TTACAACTCTACCCCCTTTAAAAAAAATTT-AGCCTCGAAATTTACTTGGTCAGAAAAGATGAGG
1 TTACAACTCTA-CCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * * * * *
5257747 GTATTGCTGTTGCATTGCCTCTTCGGGTTCCCACGTGGCTTCCTCTAAACTGTGATTACGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * *
5257812 GCAC-TT--C-------------TTC--CTCAATAACTTCACCTCACGGTCCAAAATCCGCACTG
130 GCACTTTGACTAATGGAATAGATTTCTTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACTA
* * * *
5257859 GCTTCTCATCGAAGGTCAGATCTGGCCTAACCACAATCTCCTCAACTGGTACTATGTTAGTGGGA
195 GCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGGA
* * *
5257924 TCAGACCGATAACGCCTTAGCATGGAGGCGTGAAACACATCATGAATCTGGTCTAATTTTAGAGG
260 TCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAGG
* * * * * * * *
5257989 CAACTCTCGTTTATAAGCGAAT-GGTCCCACATGTTGCAGTACACGGTAAGACCGAATCAACCTA
325 AAACCCTAGTTTATAAGCG-ATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
*
5258053 CCACTGGACCAATAGGCTCTTTGTGTCAGAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
* * *
5258118 GTGTCTAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAGGACTTGAATCCAGGCTT
454 GTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCTT
* * * * * *
5258183 CTAAAATACTCCCACACACACCCAAATCACTTAGTCTTTAAAGCAAACAAGCAATTTGTGTCAAA
519 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAAA
* * **
5258248 ACGTGCAAAAATTAAAGACTTAAATTTTGGGGG
584 ACATGCAAAAATTAGAGACTTAAATTTTGGGCA
* * *
5258281 TTACAACTCTACCCAC-TTCAACAAAATTTCAGCCTCCAAATTTAACTGGTCAGAAAAGATGAGG
1 TTACAACTCTACCC-CTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * * *
5258345 GTCTTGCTGTCGCATTGCCTCATCGGGTTCCCACGTGGCCTCTTCTAAACTATGATTACGAAAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * * * * *
5258410 ACTCTTTGACTAACGGAATAGATTCCTTCTTAAGTAACTTCACCTCACGGTCTAAAATTCGCACT
130 GCACTTTGACTAATGGAATAGATTTCTTCTT-AGTAACTTCACCTCACGGTCCAAAATCCGCACT
*
5258475 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTATTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* *
5258540 TTCAGAGAGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
5258605 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
* * *
5258670 CCACTGTACCAATAGGCTCTTTGTGTTATAAAACAAGTATTAATATATAAAAAGCCTAAGTGCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
* * * *
5258735 GTGTCCAGATTCATTTAAGAGAAAAACAAAAAATTGTGCCAGGGGCAAGTCTTGAACCCAGGCTT
454 GTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCTT
* * *
5258800 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAATAAATAAG-AATTTTGTGTCCA
519 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAA-TTTGTGTCAA
* *
5258864 AACATGGAAAAATTAGAGAATTAAATTTTGGAGCA
583 AACATGCAAAAATTAGAGACTTAAATTTTGG-GCA
* * *
5258899 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCGAAATTTTCCTGGT-A-AAAAAACTGAGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGA-TGAGG
* * * * ** * *
5258962 GTATTGCTGTCGCATCTCATCTTCAGGTTCCCACGTGGTTTCTTCTAAACTGTGATTACGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * **
5259027 GCACTTTGGCTAATGGAATAGATTTCTTACTTAGTAACTTCACCTCACGGTACAAAATATGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* *
5259092 AGCTTCTCTTTGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* * * *
5259157 ATCAGAGCGATAATGCCTTATCATGGAGACGTGAAACCCATCATGAATCTAGTCTAATTTCAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
* * *
5259222 GAAACCCTAGTTTATAAGCGATCAATCCCACACGTTGCAATACACGGTAAGGCCCAATCAACCTA
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
*
5259287 CCACTGGACCAATAGGCTCTTTGTGTCATGAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
* * *
5259352 GTGTCCAAATTCATTTAAGAGAAAAACTAAAAATTGTGTCAGAGG-CAAGACTTGAACCCAAGCT
454 GTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCA-AGGCCAAGACTTGAACCCAGGCT
*
5259416 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGA-AAAAAAG-AATTTTGTGTC
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAA-ACAAACAAGCAA-TTTGTGTC
* *
5259479 AAAACATGCAAAAATTAGAGAATTAAATTTTAGAGCA
581 AAAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * *
5259516 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCGAAATTTTCCTGGTCGGAAAAGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
** * * * * * *
5259581 T-TATTTTGTTGCATCACCTCTTTGGGTTCCCACGTGGCTTCTTCTGAATTGTGATTACGCCAAA
66 TCT-TGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * * *
5259645 GTACTTTGACTAATGGAATAGATTTTTTCCTTAGTAACTTAACCTTACGGTCCAAAATCCGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * * * *
5259710 AGCTTCTCCTCGAAGGTCAGATCT-GTCCTAACCTCAATCTCTTCAACAGGTACTATGTCAGCGT
194 AGCTTCTCCTCGAAGGTCAGATCTAG-CCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGG
*
5259774 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTTAGA
258 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
* * * * *
5259839 GGAAACCCTAGCTTATAAGTGATCAGTCCCGCACATTGCAGTACACAGTAAGGCCCAATGAACCT
323 GGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
* *
5259904 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGGATTAAAATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* ** *
5259969 AGTGTTCAGATTCATTTAAGAG-AAAACTAAAAATTGTGCCTGGGGCAAGACTTGAACCCAGGCT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* * *
5260033 TCTCAAACACTCCCATACACACCCATATCACTTAGCCATTAAAACAAATAAGCATTTTGTGTCAA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
*
5260098 AACATGCAAAAATTAGAGATTTAAATTTTGGAGCA
583 AACATGCAAAAATTAGAGACTTAAATTTTGG-GCA
* * * *
5260133 TTACAACTCTACCCCTTTTAAAAAAATTTTATCCTCAAAATTTTCCTGGTCAGAAAAGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* *
5260198 TCTTGCTGTCGCATCGCCTCCTT-GGGTTCCCACGTCGCCTCTTCTGAACTGTGATTACGTAAAA
66 TCTTGCTGTCGCATCGCCT-CTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * *
5260262 GCACTTTGACTAATGGAATAGATTTATTCCTCAGTAACTTCACCTCACGGTCCAAAATTCGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* *
5260327 GGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGGGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
5260392 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
*
5260457 GAAACCCTAGTTTATAAGTGATCAGTCCCACACGTT-CAAGTACACGGTAAGGCCCAATGAACCT
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGC-AGTACACGGTAAGGCCCAATGAACCT
*
5260521 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGGATTAATATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* *
5260586 AGTGTCCAAATTCATTTAAGAGAAAAACTAAAAATTGTGCC-TGGCGCAAGACTTGAACCCAGGC
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGC-CAAGACTTGAACCCAGGC
* *
5260650 TTCTCCAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCATTTTGTGTCA
517 TTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCA
* *
5260715 AAACATGCAAAAATTAGATACTAAAATTTTGGGGCA
582 AAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * *
5260751 TTACAACTCTACCCCCTTTAAAAAAATATCAGCCTCAAAATTTACCTGGTCAGAAAAGATAAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * ** * * *
5260816 TATTGCTGTCGCATCGCTTCTTTTGGTTCCCACGTGGCTTCTTCTGAACGGTGATTACGCTAAAG
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAAG
* * * * *
5260881 CACTTT-ACCGAATGGAATAGATTTCTTCCTCAGTAACTTTACCTCATGGTCCAAAACCCGCACT
131 CACTTTGA-CTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * * *
5260945 AGCTTCTCCTCAAAGGTCAGATCAACCCTAACCTCAAACTCCTCAACTGGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* * * * *
5261010 GTCATAGCAATAATGCCTTAGCATTGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA-
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
* * * *
5261074 GATAACTCTAGTTTATAAGCGATCGGTCCCACACGTTGCAGTACACAGTAAGGCCCAAGGAACCT
324 GA-AACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
*
5261139 ACCACTGGACCAATAGGCTCATTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* * *
5261204 ACTGTCAAGATTCATTTAAGAGAAAAACCT-AAAATTGTGCCAAGGCCAAGACTTGAACCCAAGC
453 AGTGTCCAGATTCATTTAAGAGAAAAA-CTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGC
* * ** *
5261268 TTCTCAAACACTCCCACAAACACCCAAATCACTTAGCCATTAAAGTAAACATGTC-ATTTGTGTC
517 TTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAG-CAATTTGTGTC
*
5261332 AAAACATGCAAAAATTAGAGACTTAAATTTTAGGGCG
581 AAAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
** * *
5261369 TTACAACTCTACCCAATTCAACAAAATTTTAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * * *
5261434 TCTTGCTGTCGCATTGCCTCCTCGGGTTCCCACGTGGCCTCTTCCTCAGTAACT-TTACCTCACG
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTT-CT--G-AACTGTGA--TTAC-
** * * * * * * * *
5261498 GTCCAAAATCCGCACTAGCTT--CTCCTCGAAGGTCAGATCTGTCCTAACCTCAA--TCTCTTCA
124 G--CAAAA---GCACT---TTGACTAATGGAA--T-AGATTTCTTCTTA-GT-AACTTCACCTC-
* * ** ** * * **** * ** *
5261559 ACTGGTACTATGTGAGC-GT-G-ATCAGAGCGATAAGGCCTTAGCATGGAGACGTGAAACACATC
175 AC-GGTCCAAAATCCGCACTAGCTTCTCCTCG--AAGG--TCAG-ATCTAG-CCT--AAC-C-TC
** * * * * * *
5261621 ATGAATCTGTTCTAATTTCAGGGGAAACCCTA-GTTTA-TAAGTGATCAG-TCGCA-CACG--TT
229 ---AATCTCCTC-AA---C--TGG-TA--CTATG-TGAGT--GGGATCAGAGCG-ATAACGCCTT
* * * * * **
5261680 GCAGTACAAGGTAAGGCCCAATGAACCTACCACTGGACCAATAGACTCTTTGTGTCATAA-AACA
278 --AG--CATGG--A-G-AC-GTGAA---A-CAC---ATC-AT-GAATC--TG-GTC-TAATTTCA
* * * * * * * * ** ***
5261744 -AGTATTAA---TA-TATAAAAG-GCCTAAGTTCCAC-TG-T-CAAGATTCA-TTTAAGAGAAAA
321 GAGGA--AACCCTAGTTTATAAGCG-ATCAGTCCCACACGTTGC-AG-TACACGGTAAG-GCCCA
* ** ** * * *** * *
5261799 ACTAAAAATTGTGC-CTGGGGCAAGACTTGAACCCAGGCTTCTCAAACACTCTCATACACACCCA
380 A-T-GAACCT-ACCACT-GGACCA-A--T------AGGC-TCT----TTGTGTCATA-A-A-ACA
* ** *** *** ** **
5261863 AATCACTTAGCCAT-TAAAACAAAC-AAGCAT-TTTGTGT-CA-AAACATGCAA-A-AATTAGAG
424 AGT-A-TTA-ATATATAAAA-GGCCTAAG--TGCCAGTGTCCAGATTCATTTAAGAGAA--A-A-
** * * *** * * * * *
5261921 ACTTAAATTTTGGGGC-ATTAC-A-ACTCT--ACCC--CCTT-TAAAAAAATATCAGCC-TCGAA
479 AC-TAAAAATTGTGCCAAGGCCAAGACT-TGAACCCAGGCTTCT-CAAACA-CTC--CCAT--AC
* * * * ** * * *
5261977 ATTTACCTGGTCAGAAAGATGAGGGTATTGCTTGTTAGAGTATGCCCAAAGATCAATCATGAGAT
536 A--CACC----C---AA-ATCA--CT-TAGC-CATTA-A--A---AC-AA-A-CAAGCA--A-TT
* * *** * * * * **
5262042 GGTTGT-AATAACATACTTGATTTATCATG-TTTATTAATATAAGGCA
575 TG-TGTCAA-AACATGCAAAAATTA-GA-GACTTA--AATTTTGGGCA
* *** * ***** * ** * * * ** * *
5262088 TTACTA-T-TA-TTATTTCAGTTTCATTTCTGTGT-ATATAAATAAACTATTTTATAATAATGTC
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCA-A-AATTTACCT-GGTCAGAA-AA-G--
* ** * * *** * **** * * *
5262149 CTGAGAATAATATGAT-T---AT----TCTTAAAAGTTCCTTA-GTCAAGTATTATTG--TTGT-
59 ATGAGGGT-CT-TGCTGTCGCATCGCCTCTT-CGGGTTCC-CACGTGGCCTCTT-CTGAACTGTG
* * * * * ** ** * ** *
5262202 A-TAGGACAATGATAATGCA-TTAAGACTAACGTGTAGTTGATTGATGATAAAG-AGTTGTCA-T
119 ATTACG-C-A--A-AA-GCACTT-TGACTAA--TGGAATAGATTTCTTCT-TAGTAACT-TCACC
* * * * *** ** * ** * ** * * * * *
5262263 TGATATGGAATGTCAGAATCATTACATGAATATGTGTGTTAG-AGAACAACATATTGGACTGACC
173 T--CACGG--T-CCAAAATCCGCAC-T--AGCT-TCTCCTCGAAGGTC-AGAT-CTAGCCT-AAC
* * ** * * * * * * * *
5262327 CGTTATGAGTATGTTTC--TTGGATTATTATGT-AAT-TG-TCACGA-C-ATTACTCATAATG-A
226 C-TCA--A-TCT-CCTCAACTGG--TACTATGTGAGTGGGATCA-GAGCGATAACGCCTTA-GCA
** * * * ** * * * * ** * * *
5262384 TTAATA-TTTATATGATCCTCA-GACT-TGAGATCATCATAATCCTA--ACATCGTGAGTTGTAT
282 TGGAGACGTGA-AACA-CATCATGAATCTG-G-TC-TAAT-TTCAGAGGAAACCCT-AGTT-TAT
*** * ** * *** ** * ** * * **
5262444 ATTTTGATACAGTCAAACGTACACCGTAACTGGTTGTTCTATAAAGACTGATGTTGGATATACCA
339 A-AGCGAT-CAGTC---C-CACA-CGTTGC-AG-TACACGGT-AAGGCCCA--ATGAACCTACCA
** *** * * * * * ** ** * ** **
5262509 CAATCTATGTAGAGGGATATGGTTG-GTCGATAGAGGATAAGTCCCTCCTACATAATGGGAGTAA
392 C--TGGACCAATA-GGCTCT--TTGTGTC-ATA-A-AACAAGT-ATTAATATATAAAAGGCCTAA
* * * * * * * * * *
5262573 -TATCTTAG-G-CCA-CTTGA-TTAAGTG--AGACTAGAAA-TGCATGGCC-ATGCTCAAATAAG
448 GT-GC-CAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTG--T-GCCAAGGC-C-AA-GAC
** * * * **** ** * * ** * * ** *
5262629 TTGATA-TTA-G-ATGTC--ATACTTATTTGTATATCGTAGTCTGCTTAAGATATCAAGGAACAT
505 TTGA-ACCCAGGCTTCTCAAACACTCCCATACACACCCAAATC-ACTT-AGCCATTAA--AAC--
* * ** * *
5262689 GGAATGGACAATGCAAGTGTGACTATTCCATGACTTGTGTCCAATCCAGAGA-TAAAGGACTTAA
563 --AA---ACAA-GCAA-TTTG--T-GT-CAAAAC--ATG--CAA---A-A-ATTAGA-GACTT-A
*
5262753 AGATTTT-TGCA
606 A-ATTTTGGGCA
* * ** * *** **** * ** ** *
5262764 -TAAAAGGT-TAATCATAAAAAGGTTATGTC-GAATCATGATCTCTTGTGACTTAGGT-AGCAAT
1 TTACAA-CTCTACCCCTTTTAACAAAATTTCAGCCTCA--A--AATT-T-ACCT-GGTCAG-AA-
* * * * * ** *
5262825 GATGCATTGCTAGATGCCACTCATTGTTCGTAGCATTAGAATCGTTCTAGTGTT---AC-T-GCT
56 -AAG-A-TG--AG--G---GTC-TTGCT-GTCGCA-TCGCCTC-TTC--GGGTTCCCACGTGGC-
* * * * * * * * * ** **
5262885 AATGTTACAAGAACCTACAG-GGTCACACCCTATAGTTGA-AATGAACTGAATAAACCATAGTTG
104 -CTCTT-C-TGAA-CT---GTGAT--TACGCAAAAG--CACTTTG-ACT-AATGGA--ATA---G
* * * * ** * * * ** * * * * * * **
5262948 GTATTGTTTTTGGGGTCGCTTGA-ATTA-AAT-TAATTAT-AGAATTA-ATT-TAATTCGGTAA-
151 AT-TTCTTCTT--AGTAACTTCACCTCACGGTCCAA-AATCCGCACTAGCTTCT-CCTC-G-AAG
* * * * * * * * ** * *
5263006 -TCAAAT-T-TCC-AA-CACATTAT-GTACAAGGTTGTTGTACGTATAGTGAGGA-CATGA---A
209 GTCAGATCTAGCCTAACCTCAATCTCCT-CAA-CTGGTACTATGT-GAGTG-GGATCA-GAGCGA
** * * ** * * * * ** * ** * * * *
5263061 T-TTG-GTTAGCAT-AAGAATTCAAATAAATATATGGTTTACCGAACTTATATTATAATTAATGT
269 TAACGCCTTAGCATGGAGACGTGAAACACAT-CAT-GAAT-CTGGTC-TA-ATT-TCA--GAGGA
*** * * * *** * ** ** * * ***** **
5263123 AATTATAATTTTTGGATTAA--AAT-ATTATTATATTTATTTAATTCTTAAAAAAACCCTAAAAT
326 AACCCT-A-GTTT--A-TAAGCGATCAGTCCCACACGT-TGCAGTACACGGTAAGGCCC---AAT
* ** * ** ** *** * * ** * ** *
5263185 AAAAGGATA-TA-TATAATCCCGT-TTTTCTTTGTTTGAGTCTAGC-AGCCTTCAA-AGA-AAAA
382 -GAA-CCTACCACT-GGA-CCAATAGGCTCTTTGTGTCA-TAAAACAAGTATT-AATATATAAAA
** ** * * *** * ** ** **** ** *
5263244 TAACTCTCAA--AACTGTTTTGGGGATTCCTTCCGTTCGTAG-TCAACTGGGTGGATTACG-TAG
441 -GGC-CT-AAGTGCCAG-TGTCCAGATTCATT---TAAG-AGAAAAACT--AAAAATTGTGCCA-
* * *** * * * * ** **** *
5263305 AGGCCGAAATCACAATAGATTGC-GGTTTGGTTC-GACA-GCAGAT-CAGGCTACTCGTTGTTGA
495 AGGCC--AA-GAC--TTGAACCCAGGCTT--CTCAAACACTCCCATACA--C-AC-C-CAAATCA
* * * * * * * ** * * *** *
5263366 GGTGTTGTTGTCTACTCT-GAATAAACATTAGGTAATTT-CG-CAACCTCTTTCACCCCGATTCG
548 ----CT-TAG-CCA-T-TAAAACAAACA--A-GCAATTTGTGTCAA-AACATGCA--AAAATTAG
*** * *
5263428 TTCCTCACACATGGATCCCT-GG--
599 AGACTTA-A-AT---T--TTGGGCA
** *** * ** *** ** * ** *
5263450 TTAGGA-TCGT-CGGATTTT---TATTTTTC-G-CTGCGCCA--TA-GGGGTGCCG--GCGATCC
1 TTACAACTC-TACCCCTTTTAACAAAATTTCAGCCT-CAAAATTTACCTGGT-CAGAAAAGAT-G
* * * *
5263503 A---ACATTGCTGTCGCATCGCCTCTTTGGGTTCCCATGTGGCTTCTTCTGAA-TGGTGATTACG
62 AGGGTC-TTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACT-GTGATTACG
* * * * * *
5263564 CCAAAGCACTTTGACGAATGGAATAGATTTCTTCCTCACTAACTTCATCGCACGGTCCAAAATCC
125 CAAAAGCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCC
* *
5263629 GCACTGGCATCTCCTCGAAGGTCAGATCT-GTCCTAACCTCAATCTCCTCAACTGGTACTATGTG
189 GCACTAGCTTCTCCTCGAAGGTCAGATCTAG-CCTAACCTCAATCTCCTCAACTGGTACTATGTG
* *
5263693 AGTGGGGTCAGAGCGATAACGCCTTAGCATGGAGACTTGAAACACATCATGAATCTGGTCTAATT
253 AGTGGGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATT
** * *
5263758 TCAGAGGAAAGTCTAGTTTATAAGCGATCGGTCCCACACGTTGCAGTACACGGTAAGGCCCAATC
318 TCAGAGGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATG
5263823 AACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAA
383 AACCTACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAA
*
5263888 GTGCCAGTGTCAAGATTCATTTAAGAGAAAAAC-----A----G----GG-CAAGACTTGAACCC
448 GTGCCAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCC
* * * * *
5263939 AGGCTTCTCAAACACTCCCACACACACCCAAATCACTTAGCAATTAAAGCAAACAAGTAATTCGT
513 AGGCTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGT
* *
5264004 GTCAAAAGATGCAAAAATTAGAGAC-TAAACTTTTGGGGCG
578 GTCAAAACATGCAAAAATTAGAGACTTAAA-TTTT-GGGCA
* * * * * *
5264044 TTATAATTCTACCCAC-TTCAACAAAATTTCAGCATCCAAATTTACCTGGTCAGAAAAGATAAGG
1 TTACAACTCTACCC-CTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * * **
5264108 GTCTTGTTGTCGCATCGCCTCCTCGGGTTCCCACGTCGCCTCTTCTAAACTGCAATTACGCAAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * * *
5264173 GCACTTTGACTAATGGAATAGATTTCTTTCTCAGTAACTTCACCTTAGGGTCCAAAATCTGCACT
130 GCACTTTGACTAATGGAATAGATTTC-TTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
*
5264238 GGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
*
5264303 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGATCTAATTTCAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
*
5264368 GAAACCCTAGTTTATAAGCGATAAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
* *
5264433 CCACTGTACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTTCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
* * *
5264498 GTGTCCAGATTCATTTAAGAGAAAAA-TGAAAAATTGTCCCAGGGGCAAGACTTGAACCCAGGCT
454 GTGTCCAGATTCATTTAAGAGAAAAACT-AAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* * *
5264562 TCTCAAACACTCCCACACACACCCAAATCACTTAGCCATTAAAACAAACAAACATTTTGTGTCAA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
*
5264627 AACA-GCAAAACTTAGAGACTTAAATTTTGGGGCA
583 AACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * *
5264661 TTACAACTCTACCTCC-TTTAACAAAATATCAGCCTCGAAATTTACTTGGTTAGAAAAGATGAGG
1 TTACAACTCTACC-CCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
** * * * *
5264725 GAATTGCTGTCGCATCGCCTCTTTGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTAAGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * *
5264790 GCACTTTGACTAATGGAATAGATTTCTTCCTCACTAACTTCACCTCACGGTCCAAAATCTGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * * *
5264855 GGCTTCTCCTCAAAGGTTAGATCT-GTCCTAACCTCAATCTCCTCAACTGGTACTATGTGACTGG
194 AGCTTCTCCTCGAAGGTCAGATCTAG-CCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGG
* * * *
5264919 GGTCAGAGCGTTAACGCCTTAGCATGGAGATGTGAAACACATCATGAATCTGGTCTAATTTTAGA
258 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
** * *
5264984 GGAAAGTCTAGTTTATAAGCGATCGGTCCCACACGTTGCAGTACACGGTAAGGCCCAATCAACCT
323 GGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
*
5265049 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAGCAAGTATTAATATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* *
5265114 AGTGTCAAGATTCATTGAAGAG-------AAAAA------C-AGGCCAAGACTTGAACCCAGGCT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
** * ** *
5265165 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGTAAACAAGTAATCCGTGTAAA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
* * *
5265230 AAGATGCAAACATTAGAGACTTAAATTTTGGGGCG
583 AACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * *
5265265 TTACAACTCTACCCAC-TTCAACAAAATTTCAACCTCCAAATTTACCTGGTCAGAAAAGATGAGG
1 TTACAACTCTACCC-CTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * *
5265329 GTCTTGCTGTCGCATCGCCTCCTCGGGTTCCCACGTCGCCTCTTCTGAACTGCGATTACGCAAGA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* *
5265394 GCACTTTGACTAATGGAATAGATTTCTTCCTCAGTAACATCACCTCACGGTCCAAAATCCGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* *
5265459 AGCTTCTCCTTGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGA
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* *
5265524 ATCGGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAAAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
*
5265589 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATCAACCTA
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
* *
5265654 CCATTGGACCAATAGCCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
** * *
5265719 GTGTGAAGATTCATTTAAG-G------GAAAAA------C-AGGCCAAGACTTGAACCAAGGCTT
454 GTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCTT
*
5265770 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAAA
519 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAAA
* **
5265835 ACATGCAAAAATTAGAAACTTAAATTTTGGGGTG
584 ACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * *
5265869 TTACAACTCTACCCCCTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTTAGAGAAGATAAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * * * * * *
5265934 TATTGCTATCGCATTGCCTCTTCGGGTTGCCACGTGGCTTCTTCTGAACTGTGATTACACCAAAG
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAAG
* * * * ** *
5265999 CACTTTGACTAATGGAAAATATTTCTTTCTCAGTAACTTCACCTCACGGCCCAAAATTTGCACTG
131 CACTTTGACTAATGGAATAGATTTC-TTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACTA
* * * *
5266064 GCTTCTCATCGAAGGTCAGATCTAGTCTAACCTCAATCTCTTCAACTGGTACTGTGTGAGTGGGA
195 GCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGGA
* * * * * *
5266129 TCAGAACAATAGCACCTTA-CATTGGAGACGTGAAACATATCATGAATCTGGTCTAATTTTAGAG
260 TCAGAGCGATAACGCCTTAGCA-TGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
* * * ** * * *
5266193 GCAACTC-ATGTTTATAATCGATTGGTCCCACACGTTGCAGTACACGATAGGGACCAATGAACCT
324 GAAACCCTA-GTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
* * * *
5266257 ACCTCTGAACTAATAGCCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* * * * * *
5266322 AGTATTCAGATTCATTTAACAGAAATATTAAAAATTGTGCCAAGGCCAATACTTGAACCCAGGCT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* *
5266387 TTTCAAACTA-TCCCATACACACCCAAATCTCTTAGCCATTAAAACAAACAAGCAATTTGTGTCA
518 TCTCAAAC-ACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCA
* * * ** *
5266451 AAACATGCAAAATTTAGAAACCTATGTTTTGGGGCG
582 AAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * * *
5266487 TTACAACTCTACCCAC-TTTAACAAAATTTTAGCCTCGAAATCTACCTGGTCAGAAAAGAAGACG
1 TTACAACTCTACCC-CTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* ** * ** * *
5266551 GTATTATTGTCGCATCGCCTATTCGGGTTCCCACGTTTCTTCTTCTGAACTGTGATTACGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * * * *
5266616 GCACTTTAACTAATGGAATAGATTT-TTCCTTAGTAGCTTAACCTCACGGTCCAAAATCTGCATT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * * *
5266680 GGCTTCTCCTCGAAGGTCAGATCTGGACTAACCCCAATCTCCTCAACTGGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* * * * *
5266745 AGCAGAGCGATAACGCCTTAGCACGGAGACGTGTAACACATCATGAATCTGGTCTGATTTTAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
* * * *
5266810 AAAACTCTAGTTTATAAGCGATCGGTCCCACACGTTTCAGTACACGGTAAGGCCCAATGAACCTA
324 GAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTA
* * *
5266875 CCACTGGACCAATAGGCTCTTTGGGTCATAAAACAAGTATTAATGTATAAAAGGCCTAACTGCCA
389 CCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCA
* *
5266940 GTGTCCAGATTCCTTTAAGAGAAAAACT-AAACTTGTGCCAAGGCCAAGACTTGAACCCAGGCTT
454 GTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCTT
* *
5267004 CTCAAACACTCCCACACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTATGTCAAA
519 CTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAAA
* * **
5267069 ACATGCAAAAATTAGAAACTTAAGTTTTGGGGTG
584 ACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * ** *
5267103 TTACAACTCTACCCCATTGAACAAAA-TTCTAGCCTTGAAATTTTCCTGGTCAGAAAAGATGAGG
1 TTACAACTCTACCCCTTTTAACAAAATTTC-AGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * *
5267167 GTATTGCTGTCGCATCGCCTCTTCAGGTTCTCACGTGGCTTCTTCTGAACTGTGATTACGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACG-CAAA
* * ** *
5267232 A-CACTTTGACTAATGGAATAGATTTCTTCCTCAGTAACTTCAGCTCACAATCCAAAATCTGCAC
129 AGCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCAC
* * * * * *
5267296 TGGTTTTTCCTCG-AGTGTCAAATCTGGCCTAACCTCAATCTCCTCAACTGGTAGTATGTGAGTG
193 TAGCTTCTCCTCGAAG-GTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTG
* * * * * * * *
5267360 GGGTCAGAGTGGTAATGGCTTAGCATGGAGACGTGAAACATATCATGAATCTGGCCTAATTTTAG
257 GGATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAG
* * * * * * * *
5267425 AGGAAACTCTAGTTTATAAGTGATCGGTCTCACATGTTGCAGTACACGATAAGGCCAAATCAACC
322 AGGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACC
* * **
5267490 TACCACTGGACCAATAGCCTCTTTATGTCATAAAACAAGTATTAATATATAAAAGGAGTAAGTGC
387 TACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGC
*
5267555 CAGTGTCCAGATT-ATTTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAAACTTGAACCCAGG
452 CAGTGTCCAGATTCA-TTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGG
* * * * *
5267619 CTT-TCAAAACACTCTCATACACACCCAAATCAATTAGTCATTAAAGCAAACAAGAAATTTGTGT
516 CTTCTC-AAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGT
*
5267683 CTAAACATGCAAAAATTAGAGACTTAAATTTTGGGGCA
580 CAAAACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * * * * *
5267721 TTACAAATCTACCCCCATTTAACAAAATTTCAACCTCGAAATTTACCTGGTCAAAAAAAATAAGG
1 TTACAACTCTA-CCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGG
* * * * * *
5267786 GTATTGCTGTCGCATCGCCACTTCAGGTTCCCACGTGGCTTCTTCTGAATTGTGATTACGCCAAA
65 GTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAA
* * *
5267851 GCACTTTGACTAATGGAATAGATTTCTTTCTCAGTAACATCACCTCACGGTCCAAAATCTGCACT
130 GCACTTTGACTAATGGAATAGATTTC-TTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * *
5267916 GGCTTCTCCTCGAAGGTCAGATCTAGCGTAACCTCAATCTCCTCAACTAGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* * * * *
5267981 AGCAGAGCGATAATGCCTTAGCATGGAGACGTGTAACACATCATGAATCTGGTCTGATTTTAGAG
259 ATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAG
* * * * *
5268046 AAAACTCTAGTTTATAAGCGATC-GATCCCACATGTTTCAGTACACGGTAAGGCCGAATGAACCT
324 GAAACCCTAGTTTATAAGCGATCAG-TCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
* * *
5268110 ACCACTGGACCAATAGGCTCTTTGGGTCATAAAACAAGTATTCATATATAAAAGGCCTAACTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* *
5268175 AGTGTCCAAATTCATTTAAGAGAAAAACT-AAACTTGTGCCAAGGCCAAGACTTGAACCCAGGCT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* *
5268239 TCTCAAACACTCCCACACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTTTCAA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
* * * * **
5268304 AATATGCAAATATTAGAAACTTAAGTTTTAGGGTG
583 AACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * * ** *
5268339 TTACAACTCTACCCCATTGAACAAAATTTTACCCTTGAAATTTTCCTGGTCAGAAAAGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * *
5268404 TATTGCTGTCGCATCGCCTCTTCGGGTTCTCACGTGGCTTCTTCTGAACTGTGATTACGCCAAAA
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACG-CAAAA
* * * ** *
5268469 -CACTTTGACTAATGGAAAAGATTTCTTTCTCAGTAACTTTACCTCACAATCCAAAATCTGCACT
130 GCACTTTGACTAATGGAATAGATTTC-TTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* * * *
5268533 GGTTTTTCCTCGAAGGTCAGATCTGGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
194 AGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGG
* * * * * *
5268598 GTCAGAG-TAGTAATGGCTTAGCATGGAGACGTGAAACATATCATGAATCTGGTCTAATTTTAGA
259 ATCAGAGCGA-TAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
* * * * * * * *
5268662 GGAAACTCTAGTTTATAAGTGATCGGTCTCACATGTTTCAGTACACGGTAAGGCCAAATCAACCT
323 GGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
* * *
5268727 ACCACTGGACCAATAGCCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCGTAAGTGCT
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
*
5268792 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAAACTTGAACCCAGGCT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* * * *
5268857 TCTAAAACACTCTCATACACACCCAAATCACTTAGTCATTAAAACAAACAAGCAATTTGTGTCTA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
5268922 AACATGCAAAAATTAGAGACTTAAATTTTGGGGCA
583 AACATGCAAAAATTAGAGACTTAAATTTT-GGGCA
* * * * * *
5268957 TTACAAATCTACCCCCATTTAACAAAATTTCAACCTCAAAATTTACCTGGTCAAAAAAAAATAAG
1 TTACAACTCTA-CCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTC-AGAAAAGATGAG
* * * *
5269022 GGTATTGCTGTCGCATCGCCACTTCGGGTTCCCACGTGGCTTCTTCTGAACTGTGATTACGCCAA
64 GGTCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAA
* * * *
5269087 AGCACTTTGACTAATGGAATAGATTTCTTTCTCAGCAACTTCACCTCAAGGTCCAAAATCTGCAC
129 AGCACTTTGACTAATGGAATAGATTTC-TTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCAC
* * * * *
5269152 TGGCTTCTCCTCGAAGGTCAGATCTAACGTAACCTCAATCTCCTAAACTAGTACTATGTGAGTGG
193 TAGCTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGG
* * * *
5269217 GATCAGAGCGATAATGCCTGAGCATTGAGACGTGAAACACGA-CATGAATCTGCTCTAATTTCAG
258 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACAC-ATCATGAATCTGGTCTAATTTCAG
* * * *
5269281 AGGAAACCCTAATTTATAAGCGATCAGTCCCATACGTTGCAGTGCATGGTAAGGCCCAATGAACC
322 AGGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACC
* *
5269346 TACCACTAGACCAATAGGCTCTTTGTGTCATAAAACAATTATTAATATATAAAAGGCCTAAGTGC
387 TACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGC
* * *
5269411 CAGTGTCCAGATTCATTTGAGAGAAAAACTAAAAATTGTGCC-AGGTCCAGGACTTGAACCTAGG
452 CAGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGG-CCAAGACTTGAACCCAGG
* * *
5269475 CTTCTCAAACACTCCTATATACACCCAAATCACTTAGCCATTAAAGCAAACAAG-AATTTTGTGT
516 CTTCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAA-TTTGTGT
* *
5269539 CAAAACAAGCAAAACTTAGAGACTTAAATTTTGGAGCA
580 CAAAACATGCAAAAATTAGAGACTTAAATTTTGG-GCA
** *
5269577 TTACAACTCTACCCC-TTTAACAAAATTTCAGCCTTGAAATTTACCTGGTCAGAAAGGATGAGGG
1 TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
* * * * *
5269641 TATTGCTGGCGCATCGCCTCTTTGGGTTCCCACGTGGCTTCTTCTAAACTGTGATTACGCCAAAA
66 TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACG-CAAAA
* * * * *
5269706 -TACTTTGAGTAATGGAATAGATTTCTTCCTCAGTAACTTCACCTTACGGTCCAAAACCCGCACT
130 GCACTTTGACTAATGGAATAGATTTCTT-CTTAGTAACTTCACCTCACGGTCCAAAATCCGCACT
* *
5269770 AGCTTCTCCTCGAAGGTCAGAT-TATGCCTAACCTCAATCTCCTTAACTGGTACCATGTGAGTGG
194 AGCTTCTCCTCGAAGGTCAGATCTA-GCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGG
* * *
5269834 GGTCAGAGTGATAATGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
258 GATCAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGA
* *
5269899 GGAAACTCTAGTTTATAAACGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
323 GGAAACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCT
* ** * * *
5269964 AACGTTGGACTAGTAGGCTCTTTGTGTCATAAAAGAAGTATTAATATATAAAAGGCCTAAGTGCC
388 ACCACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCC
* * *
5270029 AGTGTCCAGATTCATTTAAGAGAAAAACTTAAAATTTTGCCAAGGCCAAGACTTGAACCCAGACT
453 AGTGTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCT
* * *
5270094 TCTAAAACACTCCCATACACACCCAAACCACTTAGCCATTAAAGCAAACAAGCAATTTGTGTCAA
518 TCTCAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAA
5270159 AACATGCAAAAATTAGAGACTTAAATTTTGGG
583 AACATGCAAAAATTAGAGACTTAAATTTTGGG
5270191 GCGTTACATT
Statistics
Matches: 10086, Mismatches: 1773, Indels: 1301
0.77 0.13 0.10
Matches are distributed among these distances:
590 1 0.00
592 3 0.00
594 6 0.00
595 7 0.00
596 1 0.00
597 19 0.00
598 117 0.01
599 407 0.04
600 14 0.00
601 12 0.00
602 9 0.00
603 91 0.01
604 1363 0.14
605 9 0.00
608 2 0.00
609 2 0.00
610 9 0.00
611 13 0.00
612 6 0.00
613 4 0.00
614 4 0.00
615 5 0.00
616 282 0.03
617 3452 0.34
618 1962 0.19
619 574 0.06
620 525 0.05
621 6 0.00
622 3 0.00
623 3 0.00
624 1 0.00
625 1 0.00
626 4 0.00
629 5 0.00
630 5 0.00
631 5 0.00
632 16 0.00
633 13 0.00
634 11 0.00
635 24 0.00
636 25 0.00
637 10 0.00
638 3 0.00
639 4 0.00
640 17 0.00
641 14 0.00
642 9 0.00
643 12 0.00
644 14 0.00
645 13 0.00
646 11 0.00
647 15 0.00
648 17 0.00
649 6 0.00
650 17 0.00
651 15 0.00
652 4 0.00
653 11 0.00
654 10 0.00
655 6 0.00
656 3 0.00
657 9 0.00
658 7 0.00
659 9 0.00
660 4 0.00
663 2 0.00
664 3 0.00
666 9 0.00
667 18 0.00
668 18 0.00
669 21 0.00
670 10 0.00
671 9 0.00
672 7 0.00
673 10 0.00
674 1 0.00
675 5 0.00
676 9 0.00
677 19 0.00
678 16 0.00
679 14 0.00
680 15 0.00
681 9 0.00
682 28 0.00
683 28 0.00
684 18 0.00
685 25 0.00
686 28 0.00
687 33 0.00
688 38 0.00
689 35 0.00
690 31 0.00
691 25 0.00
692 16 0.00
693 3 0.00
694 17 0.00
695 11 0.00
696 18 0.00
697 20 0.00
698 16 0.00
699 10 0.00
700 8 0.00
701 8 0.00
702 15 0.00
703 14 0.00
704 9 0.00
705 3 0.00
706 1 0.00
707 17 0.00
708 14 0.00
709 10 0.00
710 12 0.00
711 9 0.00
712 8 0.00
713 5 0.00
714 2 0.00
715 3 0.00
716 19 0.00
717 35 0.00
718 10 0.00
719 11 0.00
720 7 0.00
722 5 0.00
723 2 0.00
724 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (616 bp):
TTACAACTCTACCCCTTTTAACAAAATTTCAGCCTCAAAATTTACCTGGTCAGAAAAGATGAGGG
TCTTGCTGTCGCATCGCCTCTTCGGGTTCCCACGTGGCCTCTTCTGAACTGTGATTACGCAAAAG
CACTTTGACTAATGGAATAGATTTCTTCTTAGTAACTTCACCTCACGGTCCAAAATCCGCACTAG
CTTCTCCTCGAAGGTCAGATCTAGCCTAACCTCAATCTCCTCAACTGGTACTATGTGAGTGGGAT
CAGAGCGATAACGCCTTAGCATGGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAGGA
AACCCTAGTTTATAAGCGATCAGTCCCACACGTTGCAGTACACGGTAAGGCCCAATGAACCTACC
ACTGGACCAATAGGCTCTTTGTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCAGT
GTCCAGATTCATTTAAGAGAAAAACTAAAAATTGTGCCAAGGCCAAGACTTGAACCCAGGCTTCT
CAAACACTCCCATACACACCCAAATCACTTAGCCATTAAAACAAACAAGCAATTTGTGTCAAAAC
ATGCAAAAATTAGAGACTTAAATTTTGGGCA
Found at i:5261982 original size:569 final size:568
Alignment explanation
Indices: 5260904--5262008 Score: 1732
Period size: 569 Copynumber: 1.9 Consensus size: 568
5260894 GGAATAGATT
*
5260904 TCTTCCTCAGTAACTTTACCTCATGGTCCAAAACCCGCACTAGCTTCTCCTCAAAGGTCAGATCA
1 TCTTCCTCAGTAACTTTACCTCACGGTCCAAAACCCGCACTAGCTTCTCCTCAAAGGTCAGATCA
* * * *
5260969 ACCCTAACCTCAAACTCCTCAACTGGTACTATGTGAGTGGGGTCATAGCAATAATGCCTTAGCAT
66 ACCCTAACCTCAAACTCCTCAACTGGTACTATGTGAGCGGGATCAGAGCAATAAGGCCTTAGCAT
* * *
5261034 TGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAGATAACTCTAGTTTATAAGCGATCG
131 GGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAGATAACCCTAGTTTATAAGCGATCA
*
5261099 GTCCCACACGTTGCAGTACACAGTAAGGCCCAAGGAACCTACCACTGGACCAATAGGCTCATTGT
196 GTCCCACACGTTGCAGTACACAGTAAGGCCCAAGGAACCTACCACTGGACCAATAGACTCATTGT
5261164 GTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCACTGTCAAGATTCATTTAAGAGAAA
261 GTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCACTGTCAAGATTCATTTAAGAGAAA
5261229 AACCTAAAATTGTGCCAAGGCCAAGACTTGAACCCAAGCTTCTCAAACACTCCCACAAACACCCA
326 AACCTAAAATTGTGCCAAGGCCAAGACTTGAACCCAAGCTTCTCAAACACTCCCACAAACACCCA
** *
5261294 AATCACTTAGCCATTAAAGTAAACATGTCATTTGTGTCAAAACATGCAAAAATTAGAGACTTAAA
391 AATCACTTAGCCATTAAAACAAACAAGTCATTTGTGTCAAAACATGCAAAAATTAGAGACTTAAA
* * * *
5261359 TTTTAGGGCGTTACAACTCTACCCAATTCAACAAAATTTTAGCCTCAAAATTTACCTGGTCAGAA
456 TTTTAGGGCATTACAACTCTACCCAATTCAAAAAAATATCAGCCTCAAAATTTACCTGGTCAG-A
*
5261424 AAGATGAGGGTCTTGCTGTCGCATTGCCTCCTCGGGTTCCCACGTGGCC
520 AAGATGAGGGTATTGCTGTCGCATTGCCTCCTCGGGTTCCCACGTGGCC
* * *
5261473 TCTTCCTCAGTAACTTTACCTCACGGTCCAAAATCCGCACTAGCTTCTCCTCGAAGGTCAGATCT
1 TCTTCCTCAGTAACTTTACCTCACGGTCCAAAACCCGCACTAGCTTCTCCTCAAAGGTCAGATCA
** * * * *
5261538 GTCCTAACCTCAATCTCTTCAACTGGTACTATGTGAGCGTGATCAGAGCGATAAGGCCTTAGCAT
66 ACCCTAACCTCAAACTCCTCAACTGGTACTATGTGAGCGGGATCAGAGCAATAAGGCCTTAGCAT
* * *
5261603 GGAGACGTGAAACACATCATGAATCTGTTCTAATTTCAGGGGA-AACCCTAGTTTATAAGTGATC
131 GGAGACGTGAAACACATCATGAATCTGGTCTAATTTCA-GAGATAACCCTAGTTTATAAGCGATC
* * *
5261667 AGTCGCACACGTTGCAGTACA-AGGTAAGGCCCAATGAACCTACCACTGGACCAATAGACTCTTT
195 AGTCCCACACGTTGCAGTACACA-GTAAGGCCCAAGGAACCTACCACTGGACCAATAGACTCATT
*
5261731 GTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTTCCACTGTCAAGATTCATTTAAGAGA
259 GTGTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCACTGTCAAGATTCATTTAAGAGA
** * * * * *
5261796 AAAA-CTAAAAATTGTGCCTGGGGCAAGACTTGAACCCAGGCTTCTCAAACACTCTCATACACAC
324 AAAACCT-AAAATTGTGCCAAGGCCAAGACTTGAACCCAAGCTTCTCAAACACTCCCACAAACAC
5261860 CCAAATCACTTAGCCATTAAAACAAACAAG-CATTTTGTGTCAAAACATGCAAAAATTAGAGACT
388 CCAAATCACTTAGCCATTAAAACAAACAAGTCA-TTTGTGTCAAAACATGCAAAAATTAGAGACT
* ** * *
5261924 TAAATTTTGGGGCATTACAACTCTACCCCCTTTAAAAAAATATCAGCCTCGAAATTTACCTGGTC
452 TAAATTTTAGGGCATTACAACTCTACCCAATTCAAAAAAATATCAGCCTCAAAATTTACCTGGTC
5261989 AGAAAGATGAGGGTATTGCT
517 AGAAAGATGAGGGTATTGCT
5262009 TGTTAGAGTA
Statistics
Matches: 487, Mismatches: 45, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
568 22 0.05
569 462 0.95
570 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (568 bp):
TCTTCCTCAGTAACTTTACCTCACGGTCCAAAACCCGCACTAGCTTCTCCTCAAAGGTCAGATCA
ACCCTAACCTCAAACTCCTCAACTGGTACTATGTGAGCGGGATCAGAGCAATAAGGCCTTAGCAT
GGAGACGTGAAACACATCATGAATCTGGTCTAATTTCAGAGATAACCCTAGTTTATAAGCGATCA
GTCCCACACGTTGCAGTACACAGTAAGGCCCAAGGAACCTACCACTGGACCAATAGACTCATTGT
GTCATAAAACAAGTATTAATATATAAAAGGCCTAAGTGCCACTGTCAAGATTCATTTAAGAGAAA
AACCTAAAATTGTGCCAAGGCCAAGACTTGAACCCAAGCTTCTCAAACACTCCCACAAACACCCA
AATCACTTAGCCATTAAAACAAACAAGTCATTTGTGTCAAAACATGCAAAAATTAGAGACTTAAA
TTTTAGGGCATTACAACTCTACCCAATTCAAAAAAATATCAGCCTCAAAATTTACCTGGTCAGAA
AGATGAGGGTATTGCTGTCGCATTGCCTCCTCGGGTTCCCACGTGGCC
Found at i:5270836 original size:16 final size:16
Alignment explanation
Indices: 5270815--5270845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5270805 TTCAGGAATA
5270815 CACATTGAATGCTAAT
1 CACATTGAATGCTAAT
*
5270831 CACATTGAGTGCTAA
1 CACATTGAATGCTAA
5270846 GATTACGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (16 bp):
CACATTGAATGCTAAT
Found at i:5272854 original size:32 final size:32
Alignment explanation
Indices: 5272818--5272879 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
5272808 AGCTCTTGGT
5272818 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
* * *
5272850 TTTTTCGTGTTGTCAAAGATTTGACCAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
5272880 AAAATAGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.40
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:5275366 original size:697 final size:697
Alignment explanation
Indices: 5274031--5275424 Score: 2743
Period size: 697 Copynumber: 2.0 Consensus size: 697
5274021 CTCACTGGAG
5274031 CTTCGTTCGCTGGCTCCCCCATACATGGTCTTACGACTTTGCTGAGACCTATGTTTTTGGTAAAT
1 CTTCGTTCGCTGGCTCCCCCATACATGGTCTTACGACTTTGCTGAGACCTATGTTTTTGGTAAAT
5274096 AGCCACCCAGGCCTGGTCACTACGACCCCCTTTTTGAGGAGGCACCCGTTCTCCCAAAGTTATGG
66 AGCCACCCAGGCCTGGTCACTACGACCCCCTTTTTGAGGAGGCACCCGTTCTCCCAAAGTTATGG
5274161 GGCTATTTTCCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCTTAGGTATCCTTTTGTTAAAGGT
131 GGCTATTTTCCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCTTAGGTATCCTTTTGTTAAAGGT
5274226 CTTTCAAGCTTTTCTTGGGAGTATAGCATGGGTTACTTCAACGTCATAGTGCCTGGTACTCAAAC
196 CTTTCAAGCTTTTCTTGGGAGTATAGCATGGGTTACTTCAACGTCATAGTGCCTGGTACTCAAAC
5274291 ATTGGCTCGGGGCATTTTCTCAACCCCTTCTTAGCCTGAAAAAATAGGGGCACCTTGCGTCCTTG
261 ATTGGCTCGGGGCATTTTCTCAACCCCTTCTTAGCCTGAAAAAATAGGGGCACCTTGCGTCCTTG
5274356 AACCGATAACCATCTTTTGGCTAATTTAGCCTCCTCCGTCTCTCAAGACCAACAAGGGGTAGTAT
326 AACCGATAACCATCTTTTGGCTAATTTAGCCTCCTCCGTCTCTCAAGACCAACAAGGGGTAGTAT
5274421 AGGAATATTCACCTGTTCTCCATTGACTATGCCATTCAGCCTGATCTTAGGCCCTGATTCACCCT
391 AGGAATATTCACCTGTTCTCCATTGACTATGCCATTCAGCCTGATCTTAGGCCCTGATTCACCCT
5274486 CTGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCAAGGCATTCGATTCCCACCAATGTTTGT
456 CTGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCAAGGCATTCGATTCCCACCAATGTTTGT
5274551 GTTACACAAGCCGACATTCTCGCTTTTGCTTCATCTACTCCCACTCACGCGGGTGCTTCCCCCTA
521 GTTACACAAGCCGACATTCTCGCTTTTGCTTCATCTACTCCCACTCACGCGGGTGCTTCCCCCTA
5274616 AGGCTGAAAGCTCCCCTACCAATGTATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
586 AGGCTGAAAGCTCCCCTACCAATGTATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
*
5274681 TTCATCTTCAGCGCAAGAGCGCTTGATCACTAAGCTATTACACACTC
651 TTCATCTTCAGCGCAAGAGCGCTCGATCACTAAGCTATTACACACTC
5274728 CTTCGTTCGCTGGCTCCCCCATACATGGTCTTACGACTTTGCTGAGACCTATGTTTTTGGTAAAT
1 CTTCGTTCGCTGGCTCCCCCATACATGGTCTTACGACTTTGCTGAGACCTATGTTTTTGGTAAAT
5274793 AGCCACCCAGGCCTGGTCACTACGACCCCCTTTTTGAGGAGGCACCCGTTCTCCCAAAGTTATGG
66 AGCCACCCAGGCCTGGTCACTACGACCCCCTTTTTGAGGAGGCACCCGTTCTCCCAAAGTTATGG
5274858 GGCTATTTTCCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCTTAGGTATCCTTTTGTTAAAGGT
131 GGCTATTTTCCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCTTAGGTATCCTTTTGTTAAAGGT
5274923 CTTTCAAGCTTTTCTTGGGAGTATAGCATGGGTTACTTCAACGTCATAGTGCCTGGTACTCAAAC
196 CTTTCAAGCTTTTCTTGGGAGTATAGCATGGGTTACTTCAACGTCATAGTGCCTGGTACTCAAAC
5274988 ATTGGCTCGGGGCATTTTCTCAACCCCTTCTTAGCCTGAAAAAATAGGGGCACCTTGCGTCCTTG
261 ATTGGCTCGGGGCATTTTCTCAACCCCTTCTTAGCCTGAAAAAATAGGGGCACCTTGCGTCCTTG
5275053 AACCGATAACCATCTTTTGGCTAATTTAGCCTCCTCCGTCTCTCAAGACCAACAAGGGGTAGTAT
326 AACCGATAACCATCTTTTGGCTAATTTAGCCTCCTCCGTCTCTCAAGACCAACAAGGGGTAGTAT
5275118 AGGAATATTCACCTGTTCTCCATTGACTATGCCATTCAGCCTGATCTTAGGCCCTGATTCACCCT
391 AGGAATATTCACCTGTTCTCCATTGACTATGCCATTCAGCCTGATCTTAGGCCCTGATTCACCCT
5275183 CTGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCAAGGCATTCGATTCCCACCAATGTTTGT
456 CTGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCAAGGCATTCGATTCCCACCAATGTTTGT
5275248 GTTACACAAGCCGACATTCTCGCTTTTGCTTCATCTACTCCCACTCACGCGGGTGCTTCCCCCTA
521 GTTACACAAGCCGACATTCTCGCTTTTGCTTCATCTACTCCCACTCACGCGGGTGCTTCCCCCTA
5275313 AGGCTGAAAGCTCCCCTACCAATGTATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
586 AGGCTGAAAGCTCCCCTACCAATGTATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
* * * *
5275378 TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTC
651 TTCATCTTCAGCGCAAGAGCGCTCGATCACTAAGCTATTACACACTC
5275425 TGTCAAGGGT
Statistics
Matches: 692, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
697 692 1.00
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (697 bp):
CTTCGTTCGCTGGCTCCCCCATACATGGTCTTACGACTTTGCTGAGACCTATGTTTTTGGTAAAT
AGCCACCCAGGCCTGGTCACTACGACCCCCTTTTTGAGGAGGCACCCGTTCTCCCAAAGTTATGG
GGCTATTTTCCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCTTAGGTATCCTTTTGTTAAAGGT
CTTTCAAGCTTTTCTTGGGAGTATAGCATGGGTTACTTCAACGTCATAGTGCCTGGTACTCAAAC
ATTGGCTCGGGGCATTTTCTCAACCCCTTCTTAGCCTGAAAAAATAGGGGCACCTTGCGTCCTTG
AACCGATAACCATCTTTTGGCTAATTTAGCCTCCTCCGTCTCTCAAGACCAACAAGGGGTAGTAT
AGGAATATTCACCTGTTCTCCATTGACTATGCCATTCAGCCTGATCTTAGGCCCTGATTCACCCT
CTGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCAAGGCATTCGATTCCCACCAATGTTTGT
GTTACACAAGCCGACATTCTCGCTTTTGCTTCATCTACTCCCACTCACGCGGGTGCTTCCCCCTA
AGGCTGAAAGCTCCCCTACCAATGTATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
TTCATCTTCAGCGCAAGAGCGCTCGATCACTAAGCTATTACACACTC
Found at i:5278443 original size:75 final size:75
Alignment explanation
Indices: 5278251--5278538 Score: 391
Period size: 75 Copynumber: 3.8 Consensus size: 75
5278241 TATCCGTTAT
* * *
5278251 CGGT-GAATTCAGCACTTAGCAACCACCAATGATTCGGGGAATTAGCACTTAGCAACCCCTTTTC
1 CGGTGGAA-TCAGCACTTAGAAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCC-TTTC
*
5278315 ACATTCAAAAATA
64 ACATT-TAAAATA
* * * *
5278328 CGGTGGAATCAGCCCTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAGCCCCTTTCAC
1 CGGTGGAATCAGCACTTAGAAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCAC
*
5278393 ATTTAAGATA
66 ATTTAAAATA
* * * *
5278403 CGGTGGGATTAGCACTTAGAAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCAC
1 CGGTGGAATCAGCACTTAGAAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCAC
5278468 ATTTAAAATA
66 ATTTAAAATA
* *
5278478 CGATGGAATCAGCACTTA-ACAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGA-AACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTT
5278539 GGGAGAATCA
Statistics
Matches: 187, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
74 1 0.01
75 124 0.66
76 9 0.05
77 50 0.27
78 3 0.02
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (75 bp):
CGGTGGAATCAGCACTTAGAAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAAATA
Found at i:5278537 original size:150 final size:152
Alignment explanation
Indices: 5278261--5278538 Score: 452
Period size: 150 Copynumber: 1.8 Consensus size: 152
5278251 CGGTGAATTC
* * *
5278261 AGCACTTAGCAACCACCAATGATTCGGGGAATTAGCACTTAGCAACCCCTTTTCACATTCAAAAA
1 AGCACTTAGAAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCTTCACATTCAAAAA
* * * * *
5278326 TACGGTGGAATCAGCCCTTAGCAACCACCAATGAATCAGGGAATCAGCACTTAGCAGCCCCTTTC
66 TACGATGGAATCAGCACTTAACAACCACCAATGAATCAGGGAATCAACACTTAGCAACCCCTTTC
5278391 ACATTTAAGATACGGTGGGATT
131 ACATTTAAGATACGGTGGGATT
*
5278413 AGCACTTAGAAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCC-CTTCACATT-TAAAA
1 AGCACTTAGAAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCTTCACATTCAAAAA
*
5278476 TACGATGGAATCAGCACTTAACAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTT
66 TACGATGGAATCAGCACTTAACAACCACCAATGAATCAGGGAATCAACACTTAGCAACCCCTT
5278539 GGGAGAATCA
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
150 61 0.53
151 8 0.07
152 47 0.41
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (152 bp):
AGCACTTAGAAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCTTCACATTCAAAAA
TACGATGGAATCAGCACTTAACAACCACCAATGAATCAGGGAATCAACACTTAGCAACCCCTTTC
ACATTTAAGATACGGTGGGATT
Found at i:5283878 original size:20 final size:21
Alignment explanation
Indices: 5283849--5283894 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
5283839 AGTCGGGATC
5283849 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
*
5283870 -CTAAGTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
5283890 ACTAA
1 ACTAA
5283895 TAGCATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:5283891 original size:11 final size:11
Alignment explanation
Indices: 5283849--5283895 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
5283839 AGTCGGGATC
5283849 ACTAA-CTAAT
1 ACTAATCTAAT
5283859 ACTAATCTAAT
1 ACTAATCTAAT
*
5283870 -CTAA-GTAAT
1 ACTAATCTAAT
5283879 ACTAATCTAAT
1 ACTAATCTAAT
5283890 ACTAAT
1 ACTAAT
5283896 AGCATAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 4 0.12
10 13 0.41
11 15 0.47
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:5289071 original size:22 final size:20
Alignment explanation
Indices: 5289027--5289064 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5289017 TTGATTATAC
*
5289027 ATATTTTTAATATAATCTAT
1 ATATATTTAATATAATCTAT
5289047 ATATATTTAATATAATCT
1 ATATATTTAATATAATCT
5289065 TAATATAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATTTAATATAATCTAT
Found at i:5293508 original size:50 final size:51
Alignment explanation
Indices: 5293420--5293553 Score: 164
Period size: 50 Copynumber: 2.6 Consensus size: 51
5293410 AAAGTGATGG
* * * *
5293420 TCACTTGTGTAGTACTATGTGCAGGCTATTACGTGTACCGGA-ATGATAAG-
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA-GATAAGA
* * * **
5293470 TCGCATGTGTAGTACTATGCGCAGGCTACTATGCGTACCGGATAGTTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGATAAGA
5293521 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
5293554 TGAACCGAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
50 39 0.55
51 32 0.45
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGATAAGA
Found at i:5293626 original size:45 final size:45
Alignment explanation
Indices: 5293562--5293647 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
5293552 TGTGAACCGA
*
5293562 ACATCATTGATTAGAAAGGTGGTTGCTATGTGCTGATTCCAATAG
1 ACATCATTGATTAGAAAGGTGGTTGCTATGTGCTGAATCCAATAG
*
5293607 ACATCATTGATTA-ATAAGGTGGTTGCTATGTGTTGAATCCA
1 ACATCATTGATTAGA-AAGGTGGTTGCTATGTGCTGAATCCA
5293648 CCGAGTATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (45 bp):
ACATCATTGATTAGAAAGGTGGTTGCTATGTGCTGAATCCAATAG
Found at i:5297792 original size:23 final size:22
Alignment explanation
Indices: 5297749--5297806 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
5297739 AAAGGTTATC
* *
5297749 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
5297770 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
5297793 TGCATATCATATCT
1 TACAAATCATATCT
5297807 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:5297822 original size:21 final size:19
Alignment explanation
Indices: 5297785--5297859 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
5297775 AATCATATCT
5297785 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
5297804 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
5297825 CCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
5297844 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
5297860 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:5301255 original size:51 final size:50
Alignment explanation
Indices: 5301118--5301303 Score: 166
Period size: 51 Copynumber: 3.7 Consensus size: 50
5301108 AAAGTGAAAG
* *
5301118 TGATG-GTCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATGAGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAA
* * *
5301167 TGATGAGTCACATGTGTAGTACAATATGCAGGCTACTATGCGTACCGG-A
1 TGATGAGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAA
* * * * ** **
5301216 TAGTTTCGA-TCACGTGTGTAGTACTATGTGCAAGATACTACGTATATTGG-A
1 T-G-AT-GAGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAA
5301267 TGGTAATG-GTCACATGTGTAGTACTATGTGCAGGCTA
1 T-G--ATGAGTCACATGTGTAGTACTATGTGCAGGCTA
5301304 GTTTGTAAAC
Statistics
Matches: 109, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
49 7 0.06
50 38 0.35
51 61 0.56
52 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGATGAGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAA
Found at i:5301386 original size:45 final size:45
Alignment explanation
Indices: 5301317--5301404 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
5301307 TGTAAACCGA
* *
5301317 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCT-AATTCCACCAG
1 ACATCATTGAGTAATAAGGTGGTTGCTATGTGCTGAA-TCCACCAG
* *
5301362 ACATTATTGAGTAATAAGGTGGTTGTTATGTGCTGAATCCACC
1 ACATCATTGAGTAATAAGGTGGTTGCTATGTGCTGAATCCACC
5301405 GAGTATCTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 36 0.95
46 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
ACATCATTGAGTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:5308486 original size:101 final size:102
Alignment explanation
Indices: 5308309--5308572 Score: 395
Period size: 102 Copynumber: 2.6 Consensus size: 102
5308299 TAACCGTTAT
* * * *
5308309 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGAAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGG-AATCAGCACACAGCAACCCCTCGGGG
* * *
5308374 GAATCAGCACTTAGCAACCCCC-TTAACATTTCAGATG
65 GAATCAGCACTTAGCAACCCCCTTTAACATTTAAAATA
**
5308411 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGAATCAGCACACAGCAACCCCTCGGGGG
*
5308476 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 AATCAGCACTTAGCAACCCCCTTTAACATTTAAAATA
* *
5308513 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCATCACACAGCAACCCCT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAAT-AGGGAATCAGCACACAGCAACCCCT
5308573 TTATATGCAA
Statistics
Matches: 146, Mismatches: 14, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
101 45 0.31
102 80 0.55
103 21 0.14
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (102 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGAATCAGCACACAGCAACCCCTCGGGGG
AATCAGCACTTAGCAACCCCCTTTAACATTTAAAATA
Found at i:5315658 original size:33 final size:34
Alignment explanation
Indices: 5315616--5315771 Score: 114
Period size: 33 Copynumber: 4.6 Consensus size: 34
5315606 CAGATGCGGT
5315616 GGAATCAGCACTTAGCAACCACCAAT-GAATAGG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
*
5315649 GGAATCAGCACTTAGCAACC-CC--TCG----GG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
* *
5315676 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--TAGAATA-GG
*
5315718 TGGAATCAGCACTTAGCAACCACCAAT-GAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
**
5315752 GGAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
5315772 CCTTTATATG
Statistics
Matches: 99, Mismatches: 7, Indels: 34
0.71 0.05 0.24
Matches are distributed among these distances:
27 20 0.20
28 2 0.02
29 1 0.01
30 1 0.01
31 1 0.01
32 3 0.03
33 38 0.38
34 2 0.02
35 3 0.03
36 1 0.01
37 1 0.01
38 1 0.01
39 2 0.02
42 5 0.05
43 18 0.18
ACGTcount: A:0.35, C:0.29, G:0.20, T:0.17
Consensus pattern (34 bp):
GGAATCAGCACTTAGCAACCACCAATAGAATAGG
Found at i:5315688 original size:102 final size:103
Alignment explanation
Indices: 5315521--5315774 Score: 420
Period size: 102 Copynumber: 2.5 Consensus size: 103
5315511 GGTGGATTTC
* * *
5315521 GCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTTGGGGGAATCATCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
* * *
5315586 TAGCAACCCCC-TTCACATTTCAGATGCGGTGGAATCA
66 TAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCA
* **
5315623 GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
5315688 TAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCA
66 TAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCA
5315726 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
5315775 TTATATGCAA
Statistics
Matches: 139, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
102 70 0.50
103 69 0.50
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCAGCACT
TAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCA
Found at i:5319725 original size:19 final size:19
Alignment explanation
Indices: 5319689--5319732 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
5319679 TGGGAAAATG
5319689 GGAGA-AAAAATTGAGAGA
1 GGAGAGAAAAATTGAGAGA
* *
5319707 GGAGAGAAAAGTTGTGAGA
1 GGAGAGAAAAATTGAGAGA
*
5319726 GAAGAGA
1 GGAGAGA
5319733 TGAGAATGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (19 bp):
GGAGAGAAAAATTGAGAGA
Found at i:5329865 original size:20 final size:20
Alignment explanation
Indices: 5329840--5329884 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
5329830 TAAATACACA
5329840 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
5329860 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
5329880 TAATT
1 TAATT
5329885 CGGTTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:5335008 original size:91 final size:91
Alignment explanation
Indices: 5334853--5335034 Score: 265
Period size: 91 Copynumber: 2.0 Consensus size: 91
5334843 GCGTGTTACA
* *
5334853 CACGGCTGAGACAAACGCCCATGTCTTAGGTCATGTAGACAAGAAAATGACGAAAATCAAGCCAT
1 CACGGCTGAGACAAACGCCCATGTCTTAGGCCATGTAGACAAGAAAATGACCAAAATCAAGCCAT
*
5334918 TTTCCTCACCATTTAAAACGCGAACC
66 TTTCCTCACCATTTAAAACACGAACC
* * * * * *
5334944 CACGGCTGAGATAAATGCCCATGTGTTAGGCCGTGTGGACAAGACAATGACCAAAATCAAGCCAT
1 CACGGCTGAGACAAACGCCCATGTCTTAGGCCATGTAGACAAGAAAATGACCAAAATCAAGCCAT
* *
5335009 TTTCCTCGCCCTTTAAAACACGAACC
66 TTTCCTCACCATTTAAAACACGAACC
5335035 TACAAGTCAC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (91 bp):
CACGGCTGAGACAAACGCCCATGTCTTAGGCCATGTAGACAAGAAAATGACCAAAATCAAGCCAT
TTTCCTCACCATTTAAAACACGAACC
Found at i:5342720 original size:50 final size:50
Alignment explanation
Indices: 5342644--5342873 Score: 291
Period size: 50 Copynumber: 4.6 Consensus size: 50
5342634 GCGATCTCGA
* * *
5342644 TAAGACCATGTTTGGGACATGGCGTTGGCGCCGAGATGAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * *
5342694 TAAGACCATGTCTGGGACATGTCGTTGGCACCGAGATGAGAGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * *
5342744 TAAGACCATGTTTGGGACATGGCATTGGCACCAAGATGAGAGGTCCTC-CG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC-CATG
* * **
5342794 TAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * *
5342844 TAAGACCTTATCTGGGATATGTCATTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
5342874 GTATAGGAAA
Statistics
Matches: 156, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 154 0.99
51 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
Found at i:5344900 original size:130 final size:130
Alignment explanation
Indices: 5344754--5345013 Score: 493
Period size: 130 Copynumber: 2.0 Consensus size: 130
5344744 GGTCAAATAG
5344754 AGAGAGAGAATTCTAGAAGGTAATGATGATGTTTGTGATATTTTTAATTAATTAATTAGATAAAT
1 AGAGAGAGAATTCTAGAAGGTAATGATGATGTTTGTGATATTTTTAATTAATTAATTAGATAAAT
* * *
5344819 GTTATTTAATTAATATTTTATTAAGATTTTTAGTATTATTTTATTATTAAATGATTAATATAAAA
66 GTTATTTAATTAATATTTTAATAAGACTTTTAGTATTATCTTATTATTAAATGATTAATATAAAA
5344884 AGAGAGAGAATTCTAGAAGGTAATGATGATGTTTGTGATATTTTTAATTAATTAATTAGATAAAT
1 AGAGAGAGAATTCTAGAAGGTAATGATGATGTTTGTGATATTTTTAATTAATTAATTAGATAAAT
5344949 GTTATTTAATTAATATTTTAATAAGACTTTTAGTATTATCTTATTATTAAATGATTAATATAAAA
66 GTTATTTAATTAATATTTTAATAAGACTTTTAGTATTATCTTATTATTAAATGATTAATATAAAA
5345014 GGGAGGAAAG
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (130 bp):
AGAGAGAGAATTCTAGAAGGTAATGATGATGTTTGTGATATTTTTAATTAATTAATTAGATAAAT
GTTATTTAATTAATATTTTAATAAGACTTTTAGTATTATCTTATTATTAAATGATTAATATAAAA
Found at i:5351672 original size:22 final size:22
Alignment explanation
Indices: 5351630--5351672 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
5351620 TTAAAATCTT
*
5351630 TTAATTTTATATGTTTTATAAG
1 TTAATTTTATATGTTTAATAAG
*
5351652 TTAATTTTTTAT-TATTAATAA
1 TTAATTTTATATGT-TTAATAA
5351673 AATAAAGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTAATTTTATATGTTTAATAAG
Found at i:5356325 original size:13 final size:13
Alignment explanation
Indices: 5356307--5356331 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5356297 ATGCACCTAG
5356307 ACTTTTCATTTTC
1 ACTTTTCATTTTC
5356320 ACTTTTCATTTT
1 ACTTTTCATTTT
5356332 TTCTCTCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
ACTTTTCATTTTC
Found at i:5358913 original size:22 final size:23
Alignment explanation
Indices: 5358872--5358915 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
5358862 CCTAAATCTA
*
5358872 TTCCTATGTTCTTGTATTGACTT
1 TTCCTATGTCCTTGTATTGACTT
*
5358895 TTCCTAT-TCCTTGTTTTGACT
1 TTCCTATGTCCTTGTATTGACT
5358916 ACGCCAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.11, C:0.20, G:0.11, T:0.57
Consensus pattern (23 bp):
TTCCTATGTCCTTGTATTGACTT
Found at i:5362997 original size:14 final size:15
Alignment explanation
Indices: 5362975--5363003 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5362965 TTATGCATGT
5362975 TATGATTTGATATGA
1 TATGATTTGATATGA
5362990 TATG-TTTGATATGA
1 TATGATTTGATATGA
5363004 CATAGCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TATGATTTGATATGA
Found at i:5382806 original size:21 final size:22
Alignment explanation
Indices: 5382780--5382826 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
5382770 CTCTGCTCAA
*
5382780 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
5382801 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
5382823 ACTC
1 ACTC
5382827 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:5388183 original size:33 final size:32
Alignment explanation
Indices: 5388142--5388211 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
5388132 TCACGATGCA
* **
5388142 AATA-ATCAGTAGGGCCTTTGCCCAATTTCAGT
1 AATATATCAGTAGGGCCTTGGCCC-ATAACAGT
* *
5388174 AATATATCAGTGGGGCGTTGGCCCATAACAGT
1 AATATATCAGTAGGGCCTTGGCCCATAACAGT
5388206 AATATA
1 AATATA
5388212 AATCTGTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 16 0.50
33 16 0.50
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (32 bp):
AATATATCAGTAGGGCCTTGGCCCATAACAGT
Found at i:5388755 original size:27 final size:27
Alignment explanation
Indices: 5388684--5389041 Score: 322
Period size: 27 Copynumber: 13.3 Consensus size: 27
5388674 TATAACTTTT
*
5388684 ATTTTACCCTAT-GAGGGTATTTTAGTC
1 ATTTTACCCTATAG-GGGTATTTCAGTC
** *
5388711 ATACTACTCTA-AGAGGGTATTTCAGTC
1 ATTTTACCCTATAG-GGGTATTTCAGTC
*
5388738 ATTTTACCCTATAGGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
*
5388765 ATTTTACCCTATTGGGGTATTTC-GATC
1 ATTTTACCCTATAGGGGTATTTCAG-TC
* * * *
5388792 ATTCTACCATATGGGGGTATTTTAGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
5388819 ATTTTACCCTAT-GGGAGTATTTCTA-TC
1 ATTTTACCCTATAGGG-GTATTTC-AGTC
* *
5388846 ATTTTACCCTAT-GAGGTTATTTCAATC
1 ATTTTACCCTATAG-GGGTATTTCAGTC
*
5388873 ATTCTA-CCT-TAGGGAGTATTTCAGTC
1 ATTTTACCCTATAGGG-GTATTTCAGTC
*
5388899 ATTTTACCCTATAGGGATATTTCAGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
* * *
5388926 ATTCTACCCTATAAGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
* **
5388953 ATTTTACCCTAT-GAGAGTATTTTGGTC
1 ATTTTACCCTATAG-GGGTATTTCAGTC
* ** *
5388980 ATTCTACCCTAT-GAGGGTATTTTGGTT
1 ATTTTACCCTATAG-GGGTATTTCAGTC
* * *
5389007 ATTTTACCCTGTAAGGGTATTTTAGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
5389034 ATTTTACC
1 ATTTTACC
5389042 TATTTTAGGG
Statistics
Matches: 279, Mismatches: 38, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.01
26 23 0.08
27 242 0.87
28 11 0.04
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCAGTC
Found at i:5388769 original size:81 final size:79
Alignment explanation
Indices: 5388684--5389043 Score: 357
Period size: 81 Copynumber: 4.5 Consensus size: 79
5388674 TATAACTTTT
*
5388684 ATTTTACCCTATGAGGGTATTTTAGTCATACTACTCTAAGAGGGTATTTCAGTCATTTTACCCTA
1 ATTTTACCCTATGAGGGTATTTTAGTCATTCTAC-CTAAGAGGGTATTTCAGTCATTTTACCCTA
5388749 TAGGGGTATTTCGGTC
65 T-GGGGTATTTCGGTC
* * * *
5388765 ATTTTACCCTATTG-GGGTA-TTTCGATCATTCTACCATATGGGGGTATTTTAGTCATTTTACCC
1 ATTTTACCCTA-TGAGGGTATTTTAG-TCATTCTACC-TAAGAGGGTATTTCAGTCATTTTACCC
**
5388828 TATGGGAGTATTTCTATC
63 TATGGG-GTATTTCGGTC
* * * *
5388846 ATTTTACCCTATGAGGTTATTTCAATCATTCTACCTTAG-GGAGTATTTCAGTCATTTTACCCTA
1 ATTTTACCCTATGAGGGTATTTTAGTCATTCTACCTAAGAGG-GTATTTCAGTCATTTTACCCTA
* *
5388910 TAGGGATATTTCAGTC
65 T-GGGGTATTTCGGTC
* * ** * * * ** *
5388926 ATTCTACCCTATAAGGGTATTTCGGTCATTTTACCCTATGAGAGTATTTTGGTCATTCTACCCTA
1 ATTTTACCCTATGAGGGTATTTTAGTCATTCTA-CCTAAGAGGGTATTTCAGTCATTTTACCCTA
* *
5388991 TGAGGGTATTTTGGTT
65 TG-GGGTATTTCGGTC
* * *
5389007 ATTTTACCCTGTAAGGGTATTTTAGTCATTTTACCTA
1 ATTTTACCCTATGAGGGTATTTTAGTCATTCTACCTA
5389044 TTTTAGGGTC
Statistics
Matches: 231, Mismatches: 37, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
79 2 0.01
80 74 0.32
81 150 0.65
82 5 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (79 bp):
ATTTTACCCTATGAGGGTATTTTAGTCATTCTACCTAAGAGGGTATTTCAGTCATTTTACCCTAT
GGGGTATTTCGGTC
Found at i:5391315 original size:22 final size:25
Alignment explanation
Indices: 5391287--5391338 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 25
5391277 AAAATCACAT
5391287 TTTAATAATTTC-C-ATTTC-TTAA
1 TTTAATAATTTCGCAATTTCATTAA
*
5391309 TTTAATATTTTCGCATATTTCATTAA
1 TTTAATAATTTCGCA-ATTTCATTAA
5391335 TTTA
1 TTTA
5391339 TTAAACAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 11 0.44
23 1 0.04
25 5 0.20
26 8 0.32
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTAATAATTTCGCAATTTCATTAA
Found at i:5394016 original size:38 final size:38
Alignment explanation
Indices: 5393969--5394044 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
5393959 ATTTTCTTTA
5393969 TCAAATAAGCTCACAAAGAAACAAGATAAGAAATAGAG
1 TCAAATAAGCTCACAAAGAAACAAGATAAGAAATAGAG
* * *
5394007 TCAATTAAGCTCGCGAAGAAACAAGATAAGAAATAGAG
1 TCAAATAAGCTCACAAAGAAACAAGATAAGAAATAGAG
5394045 GAAGAATTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.54, C:0.13, G:0.18, T:0.14
Consensus pattern (38 bp):
TCAAATAAGCTCACAAAGAAACAAGATAAGAAATAGAG
Found at i:5403364 original size:21 final size:22
Alignment explanation
Indices: 5403339--5403384 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
5403329 TTAAAAACAA
5403339 ATTAAACACTT-AACTAAATTT
1 ATTAAACACTTAAACTAAATTT
* *
5403360 ATTAAATACTTAAACTAATTTT
1 ATTAAACACTTAAACTAAATTT
5403382 ATT
1 ATT
5403385 CCAGCAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAAACACTTAAACTAAATTT
Found at i:5404990 original size:22 final size:21
Alignment explanation
Indices: 5404965--5405010 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
5404955 TATTTACTGG
*
5404965 AATAAAATTAGTTTAAGTATTT
1 AATAAAATTAG-CTAAGTATTT
*
5404987 AATAAATTTAGCTAAGTATTT
1 AATAAAATTAGCTAAGTATTT
5405008 AAT
1 AAT
5405011 TTGTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (21 bp):
AATAAAATTAGCTAAGTATTT
Found at i:5405088 original size:21 final size:20
Alignment explanation
Indices: 5405062--5405103 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
5405052 TGTGTCTAAA
*
5405062 TTTTTACAGCCATTTAGTTTG
1 TTTTTA-AGCCATTTAATTTG
*
5405083 TTTTTAGGCCATTTAATTTG
1 TTTTTAAGCCATTTAATTTG
5405103 T
1 T
5405104 CCTAAGTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (20 bp):
TTTTTAAGCCATTTAATTTG
Found at i:5410436 original size:27 final size:27
Alignment explanation
Indices: 5410406--5410583 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
5410396 ATATTGAGTC
* * * *
5410406 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
5410433 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
5410460 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
5410488 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
5410515 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
5410542 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
5410569 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
5410584 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:5410545 original size:82 final size:81
Alignment explanation
Indices: 5410427--5410582 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
5410417 TGCTATATAA
* *
5410427 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
5410492 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
5410509 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
5410573 CACTTAGTGC
65 CACTTAGTGC
5410583 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:5419113 original size:27 final size:27
Alignment explanation
Indices: 5419083--5419259 Score: 144
Period size: 27 Copynumber: 6.5 Consensus size: 27
5419073 ATATTGAGCC
* * *
5419083 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
5419110 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
* *
5419137 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACATAAT-CAACT
* ** *
5419165 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
5419192 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* *
5419219 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCCACATAA-TCA-ACT
5419246 CGCACACTTAGTGC
1 CGCACACTTAGTGC
5419260 TGTACAATTT
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 95 0.78
28 24 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:5426350 original size:75 final size:75
Alignment explanation
Indices: 5426253--5426404 Score: 232
Period size: 75 Copynumber: 2.0 Consensus size: 75
5426243 CTAGGGGAAT
* * * ** *
5426253 GAGAACTTGTGGATAATTGGGTCAAGGAACCCAAATTGACTCATTCATGTCTCATGAATGGTAGC
1 GAGAACATGTGGATAATCGGGTCAAGGAACCCAAATTGACACATTCACATCTCAAGAATGGTAGC
5426318 TAATGACCAA
66 TAATGACCAA
* *
5426328 GAGAACATGTGGGTAATCGGGTCAAGGAACCCAAATTGACACATTCGCATCTCAAGAATGGTAGC
1 GAGAACATGTGGATAATCGGGTCAAGGAACCCAAATTGACACATTCACATCTCAAGAATGGTAGC
5426393 TAATGACCAA
66 TAATGACCAA
5426403 GA
1 GA
5426405 TAAGTGTGCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (75 bp):
GAGAACATGTGGATAATCGGGTCAAGGAACCCAAATTGACACATTCACATCTCAAGAATGGTAGC
TAATGACCAA
Found at i:5434284 original size:20 final size:18
Alignment explanation
Indices: 5434234--5434285 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
5434224 CTACAAGATA
5434234 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
5434251 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
5434271 AATATTAAATTAATA
1 AATATTAAATTAATA
5434286 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:5439735 original size:40 final size:40
Alignment explanation
Indices: 5439418--5439721 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
5439408 TTGAATGATG
* * *
5439418 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
5439457 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
5439497 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
5439536 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
5439576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
5439616 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
5439656 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
5439697 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
5439722 AACGAGTAGC
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 53 0.22
40 183 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:5441998 original size:30 final size:30
Alignment explanation
Indices: 5441852--5442028 Score: 107
Period size: 30 Copynumber: 6.0 Consensus size: 30
5441842 ACTATCGAGC
5441852 TATGAAAAGGGATGGT-ACGACCATCAACA-
1 TATGAAAAGGGATGGTGACGACCATCAA-AT
* *
5441881 -ATGAAAAGGGATGGTGATGAGCATCAAAAT
1 TATGAAAAGGGATGGTGACGACCATC-AAAT
* * * * **
5441911 TATGAAAATGGATAGCT-TC-AGCTATTGAAT
1 TATGAAAAGGGAT-GGTGACGA-CCATCAAAT
* * * *** * *
5441941 CATTAAAAGGGATAGCCTCGGCTATCAAAT
1 TATGAAAAGGGATGGTGACGACCATCAAAT
5441971 TATGAAAAGGGATGGTGACGACCATCAACA-
1 TATGAAAAGGGATGGTGACGACCATCAA-AT
*
5442001 -ATGAAAAGGGATAGTGACGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCAAA
5442029 ATAATGGAAT
Statistics
Matches: 111, Mismatches: 28, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
28 16 0.14
29 34 0.31
30 45 0.41
31 14 0.13
32 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCAAAT
Found at i:5442017 original size:29 final size:29
Alignment explanation
Indices: 5441972--5442027 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
5441962 CTATCAAATT
*
5441972 ATGAAAAGGGATGGTGACGACCATCAACA
1 ATGAAAAGGGATAGTGACGACCATCAACA
5442001 ATGAAAAGGGATAGTGACGACCATCAA
1 ATGAAAAGGGATAGTGACGACCATCAA
5442028 AATAATGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.14
Consensus pattern (29 bp):
ATGAAAAGGGATAGTGACGACCATCAACA
Found at i:5442044 original size:120 final size:119
Alignment explanation
Indices: 5441823--5442104 Score: 370
Period size: 120 Copynumber: 2.4 Consensus size: 119
5441813 TTATCGACTA
* **
5441823 ATGAAAAGGGATAG-CTCCGACTATCGAGCTATGAAAAGGGATGGTACGACCATCAACAATGAAA
1 ATGAAAAGGGATAGCCT-CGGCTATCGAATTATGAAAAGGGATGGTACGACCATCAACAATGAAA
* * * * **
5441887 AGGGATGGTGATGAGCATCAAAATTATGAAAATGGATAGCTTCAGCTATTGAATC
65 AGGGATAGTGACGACCATCAAAATAATGAAAATGGATAGCTTCAGCTACCGAATC
* *
5441942 ATTAAAAGGGATAGCCTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAA
1 ATGAAAAGGGATAGCCTCGGCTATCGAATTATGAAAAGGGATGGT-ACGACCATCAACAATGAAA
* *
5442007 AGGGATAGTGACGACCATCAAAATAATG-GAATGGGATAGCTTCATCTACCGAATC
65 AGGGATAGTGACGACCATCAAAATAATGAAAAT-GGATAGCTTCAGCTACCGAATC
* * * *
5442062 ATGAAAAAGGATAGCTTTGGCTATCGAATTATGGAAAGGGATG
1 ATGAAAAGGGATAGCCTCGGCTATCGAATTATGAAAAGGGATG
5442105 TGCCAACCAT
Statistics
Matches: 141, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
119 40 0.28
120 101 0.72
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (119 bp):
ATGAAAAGGGATAGCCTCGGCTATCGAATTATGAAAAGGGATGGTACGACCATCAACAATGAAAA
GGGATAGTGACGACCATCAAAATAATGAAAATGGATAGCTTCAGCTACCGAATC
Found at i:5458381 original size:19 final size:19
Alignment explanation
Indices: 5458357--5458397 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
5458347 ACTCAAGCAT
5458357 TTTATGGTTTTGTTTGATA
1 TTTATGGTTTTGTTTGATA
5458376 TTTATGGTTTTGTTTGATA
1 TTTATGGTTTTGTTTGATA
5458395 TTT
1 TTT
5458398 TTTTAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.00, G:0.20, T:0.66
Consensus pattern (19 bp):
TTTATGGTTTTGTTTGATA
Found at i:5459773 original size:12 final size:12
Alignment explanation
Indices: 5459756--5459786 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
5459746 AAAGTTTTTC
5459756 ATTAAAAACAAA
1 ATTAAAAACAAA
5459768 ATTAAAAACAAA
1 ATTAAAAACAAA
5459780 ATTAAAA
1 ATTAAAA
5459787 GCCAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (12 bp):
ATTAAAAACAAA
Found at i:5460662 original size:41 final size:41
Alignment explanation
Indices: 5460617--5460759 Score: 187
Period size: 41 Copynumber: 3.5 Consensus size: 41
5460607 CATTGAATGT
* * * *
5460617 AAGGGGTTGCTAAGTGTAGATTCCCTGAATCACTAATCAAA
1 AAGGGGTTGCTAAGTGTAGATTCCCCGAAACTCTAATAAAA
* * * *
5460658 AAGGGGTTGCTAACTGCAGATTCCCCGAAACTGTGATAAAA
1 AAGGGGTTGCTAAGTGTAGATTCCCCGAAACTCTAATAAAA
* *
5460699 AAGAGGTTGCTAAGTGTAAATTCCCCGAAACTCTAATAAAA
1 AAGGGGTTGCTAAGTGTAGATTCCCCGAAACTCTAATAAAA
*
5460740 AAGTGGTTGCTAAGTGTAGA
1 AAGGGGTTGCTAAGTGTAGA
5460760 CTCCACGAGG
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGTAGATTCCCCGAAACTCTAATAAAA
Found at i:5460872 original size:43 final size:41
Alignment explanation
Indices: 5460767--5460915 Score: 147
Period size: 42 Copynumber: 3.6 Consensus size: 41
5460757 AGACTCCACG
* * *
5460767 AGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTAA
1 AGGGGTTGTTAAGTGCTGATTCCCCGTATCATTGATTCTAA
* * * *
5460808 AGGTGGTTTTTAAGTGTTGATTCCACCGTATCCTTGATTGTGAA
1 AGG-GGTTGTTAAGTGCTGATTCC-CCGTATCATTGATTCT-AA
* * * *
5460852 AGGGGTTGTTATGTGCTGATTCCCCGTATCACTGAATAT-A
1 AGGGGTTGTTAAGTGCTGATTCCCCGTATCATTGATTCTAA
*
5460892 AGGTGGTTGCTAAGTGCTGATTCC
1 AGG-GGTTGTTAAGTGCTGATTCC
5460916 ACCAAGTAAC
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 4 0.05
41 21 0.24
42 29 0.33
43 29 0.33
44 5 0.06
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (41 bp):
AGGGGTTGTTAAGTGCTGATTCCCCGTATCATTGATTCTAA
Found at i:5468093 original size:41 final size:40
Alignment explanation
Indices: 5468031--5468166 Score: 166
Period size: 41 Copynumber: 3.3 Consensus size: 40
5468021 TGAATGTAAG
* *
5468031 GGGTTGCTAAGTGCAAATTCCCTGAATCACTGAT-AAAAAA
1 GGGTTGCTAAGTGCAAATTCCC-GAAACTCTGATAAAAAAA
* * * *
5468071 GGGTTGCTAAGTGCAGATTTCCCAAAACTCTGATCAAAAAG
1 GGGTTGCTAAGTGCA-AATTCCCGAAACTCTGATAAAAAAA
5468112 GGGTTGCTAAGTGCAAATTCCCCGAAACTCTGATAAAAAAA
1 GGGTTGCTAAGTGCAAATT-CCCGAAACTCTGATAAAAAAA
*
5468153 GAGGTTGCTGAGTG
1 G-GGTTGCTAAGTG
5468167 AAGATTTCCC
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
40 26 0.32
41 45 0.55
42 11 0.13
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGTTGCTAAGTGCAAATTCCCGAAACTCTGATAAAAAAA
Done.