Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 151 of 161
Found at i:47031250 original size:9 final size:9
Alignment explanation
Indices: 47031236--47031330 Score: 81
Period size: 9 Copynumber: 10.6 Consensus size: 9
47031226 ATTAATATTA
47031236 TACATAACT
1 TACATAACT
47031245 TACATAA--
1 TACATAACT
47031252 TACATAACT
1 TACATAACT
* *
47031261 TACGTTAATATT
1 TAC-AT-A-ACT
47031273 ATACATAACT
1 -TACATAACT
*
47031283 TACACAACT
1 TACATAACT
47031292 TACATAACT
1 TACATAACT
*
47031301 TAAATAACT
1 TACATAACT
*
47031310 TATATAA--
1 TACATAACT
47031317 TACATAACT
1 TACATAACT
47031326 TACAT
1 TACAT
47031331 TAATATGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
7 13 0.19
9 45 0.65
10 3 0.04
11 2 0.03
12 3 0.04
13 3 0.04
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:47031279 original size:22 final size:21
Alignment explanation
Indices: 47031211--47031285 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 21
47031201 TATTAACATA
47031211 ATACATAACTATCACATTAATATT
1 ATACATAACT-T-AC-TTAATATT
47031235 ATACATAACTTAC---ATA--
1 ATACATAACTTACTTAATATT
47031251 ATACATAACTTACGTTAATATT
1 ATACATAACTTAC-TTAATATT
47031273 ATACATAACTTAC
1 ATACATAACTTAC
47031286 ACAACTTACA
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
16 13 0.29
18 3 0.07
20 3 0.07
22 15 0.33
23 1 0.02
24 10 0.22
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.36
Consensus pattern (21 bp):
ATACATAACTTACTTAATATT
Found at i:47031297 original size:18 final size:18
Alignment explanation
Indices: 47031236--47031330 Score: 81
Period size: 16 Copynumber: 5.3 Consensus size: 18
47031226 ATTAATATTA
47031236 TACATAACTTACATAA--
1 TACATAACTTACATAACT
* *
47031252 TACATAACTTACGTTAATATT
1 TACATAACTTAC-AT-A-ACT
*
47031273 ATACATAACTTACACAACT
1 -TACATAACTTACATAACT
*
47031292 TACATAACTTAAATAACT
1 TACATAACTTACATAACT
*
47031310 TATATAA--TACATAACT
1 TACATAACTTACATAACT
47031326 TACAT
1 TACAT
47031331 TAATATGATA
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
16 24 0.38
17 1 0.02
18 23 0.36
19 3 0.05
20 1 0.02
22 12 0.19
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (18 bp):
TACATAACTTACATAACT
Found at i:47031313 original size:38 final size:38
Alignment explanation
Indices: 47031210--47031329 Score: 125
Period size: 38 Copynumber: 3.0 Consensus size: 38
47031200 ATATTAACAT
* *
47031210 AATACATAACTATCACATTAATATTATACATAACTTACAT
1 AATACATAACT-T-ACAATAATATTATACATAACTTACAC
**
47031250 AATACATAACTTACGTTAATATTATACATAACTTACAC
1 AATACATAACTTACAATAATATTATACATAACTTACAC
47031288 AACTTACATAACTTA-AATAACTTATATAATACATAACTTACA
1 AA--TACATAACTTACAATAA--TAT-T-ATACATAACTTACA
47031330 TTAATATGAT
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
38 26 0.37
39 4 0.06
40 22 0.31
41 3 0.04
42 1 0.01
43 14 0.20
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.34
Consensus pattern (38 bp):
AATACATAACTTACAATAATATTATACATAACTTACAC
Found at i:47031456 original size:16 final size:16
Alignment explanation
Indices: 47031409--47031448 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
47031399 ATATTTAACC
47031409 TACATAACTTACATAA
1 TACATAACTTACATAA
*
47031425 TACACAACTTACATAA
1 TACATAACTTACATAA
47031441 TACATAAC
1 TACATAAC
47031449 CTTCATAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.28
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:47037014 original size:18 final size:18
Alignment explanation
Indices: 47036991--47037036 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
47036981 GAATATGTTT
47036991 CAGCAGTCGCAACAGCCG
1 CAGCAGTCGCAACAGCCG
*
47037009 CAGCAGCCGCAACAGCCG
1 CAGCAGTCGCAACAGCCG
*
47037027 CAACAGTCGC
1 CAGCAGTCGC
47037037 CGTCTTAGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.41, G:0.26, T:0.04
Consensus pattern (18 bp):
CAGCAGTCGCAACAGCCG
Found at i:47037015 original size:9 final size:9
Alignment explanation
Indices: 47036998--47037032 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
47036988 TTTCAGCAGT
47036998 CGCAACAGC
1 CGCAACAGC
*
47037007 CGCAGCAGC
1 CGCAACAGC
47037016 CGCAACAGC
1 CGCAACAGC
47037025 CGCAACAG
1 CGCAACAG
47037033 TCGCCGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.31, C:0.43, G:0.26, T:0.00
Consensus pattern (9 bp):
CGCAACAGC
Found at i:47037374 original size:43 final size:42
Alignment explanation
Indices: 47037280--47037676 Score: 442
Period size: 43 Copynumber: 9.2 Consensus size: 42
47037270 TCTGCCAAAA
* * *
47037280 TTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGGCCTT-AGTCT
1 TTAGCGGCGTTTGTGTG-AAAGCGCCGCT-AAAGGTCTTGA-TCT
* * *
47037324 TTTGCGGCATTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCT
1 TTAGCGGCGTTTGTGTG-AAAGCGCCGCTAAAGGTCTTGATCT
*
47037367 TTAGCGGCGTTTGTCGTGTAAGCGCCGCTAAATGGTCGTTG-TCT
1 TTAGCGGCGTTTGT-GTGAAAGCGCCGCTAAA-GGTC-TTGATCT
*
47037411 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCGTTG-TCT
1 TTAGCGGCGTTTGTGT-GAAAGCGCCGCTAAAGGTC-TTGATCT
* *
47037454 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCTTGCTCT
1 TTAGCGGCGTTTGTGT-GAAAGCGCCGCTAAAGGTCTTGATCT
* * *
47037497 TTAGCGGCGTTTGTGCTGGATGCGCCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTG-TGAAAGCGCCGCTAAAGGTCTTGATCT
* *
47037540 TTAGCGGCGTTTGTGTGAAAAGCGCCGGTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGTG-AAAGCGCCGCTAAAGGTCTTGATCT
*
47037583 TTAGCGGCGTTTGTGTCGAAAGCGCCGCTAAAGATCTTGGA-CT
1 TTAGCGGCGTTTGTGT-GAAAGCGCCGCTAAAGGTCTT-GATCT
* * * **
47037626 TTGGCGGCGTTTGTGTTGGAAGCGCCGCTAAAGGTCTCGGCCT
1 TTAGCGGCGTTTGTG-TGAAAGCGCCGCTAAAGGTCTTGATCT
47037669 TTAGCGGC
1 TTAGCGGC
47037677 ATTTTTTACT
Statistics
Matches: 317, Mismatches: 24, Indels: 25
0.87 0.07 0.07
Matches are distributed among these distances:
42 6 0.02
43 241 0.76
44 67 0.21
45 3 0.01
ACGTcount: A:0.17, C:0.20, G:0.33, T:0.30
Consensus pattern (42 bp):
TTAGCGGCGTTTGTGTGAAAGCGCCGCTAAAGGTCTTGATCT
Found at i:47037595 original size:129 final size:128
Alignment explanation
Indices: 47037280--47037676 Score: 521
Period size: 129 Copynumber: 3.1 Consensus size: 128
47037270 TCTGCCAAAA
* * * * * * *
47037280 TTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGGCCTTAGTCTTTTGCGGCATTTGTGAGAAAA
1 TTAGCGGCGTTTGTGTGAAAAGCGCCGCT-AAAGGTCTT-GTCTTTAGCGGCGTTTGTGTGGAAA
*
47037345 GCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGT-CGTGTAAGCGCCGCTAAATGGTCGTT-G
64 GCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGC-TGGAAGCGCCGCTAAA-GGTC-TTGG
47037408 TCT
126 TCT
** *
47037411 TTAGCGGCGTTTGTGTGGGAAGCGCCGCTAAAGGTCGTTGTCTTTAGCGGCGTTTGTGTGGGAAG
1 TTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTC-TTGTCTTTAGCGGCGTTTGTGTGGAAAG
* *
47037476 CGCCGCTAAAGGTCTTGCTCTTTAGCGGCGTTTGTGCTGGATGCGCCGCTAAAGGTCTTGGTCT
65 CGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGCTGGAAGCGCCGCTAAAGGTCTTGGTCT
* *
47037540 TTAGCGGCGTTTGTGTGAAAAGCGCCGGTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGTCGAAAG
1 TTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTT-GTCTTTAGCGGCGTTTGTGTGGAAAG
* * * * *
47037605 CGCCGCTAAAGATCTTGGA-CTTTGGCGGCGTTTGTGTTGGAAGCGCCGCTAAAGGTCTCGGCCT
65 CGCCGCTAAAGGTCTT-GATCTTTAGCGGCGTTTGTGCTGGAAGCGCCGCTAAAGGTCTTGGTCT
47037669 TTAGCGGC
1 TTAGCGGC
47037677 ATTTTTTACT
Statistics
Matches: 236, Mismatches: 25, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
128 4 0.02
129 128 0.54
130 76 0.32
131 28 0.12
ACGTcount: A:0.17, C:0.20, G:0.33, T:0.30
Consensus pattern (128 bp):
TTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGTCTTTAGCGGCGTTTGTGTGGAAAGC
GCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGCTGGAAGCGCCGCTAAAGGTCTTGGTCT
Found at i:47037806 original size:22 final size:22
Alignment explanation
Indices: 47037774--47037816 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
47037764 TACCGGCGCT
* *
47037774 AAAAAGTGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
47037796 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
47037817 GTTTTGTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:47041190 original size:102 final size:102
Alignment explanation
Indices: 47041014--47041278 Score: 530
Period size: 102 Copynumber: 2.6 Consensus size: 102
47041004 GCCTCTATGT
47041014 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTATGAGT
1 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTATGAGT
47041079 TAATTCTTCATTTCACTTATATGAAGCGGTGATTAAA
66 TAATTCTTCATTTCACTTATATGAAGCGGTGATTAAA
47041116 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTATGAGT
1 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTATGAGT
47041181 TAATTCTTCATTTCACTTATATGAAGCGGTGATTAAA
66 TAATTCTTCATTTCACTTATATGAAGCGGTGATTAAA
47041218 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTAT
1 ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTAT
47041279 TAAGAAAAGT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 163 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (102 bp):
ATTTTTATCAAACACCCGTTTGATACAAGTTCAAGTTATGTTATCCTATTCCAATATTTATGAGT
TAATTCTTCATTTCACTTATATGAAGCGGTGATTAAA
Found at i:47042120 original size:48 final size:48
Alignment explanation
Indices: 47042068--47042168 Score: 157
Period size: 48 Copynumber: 2.1 Consensus size: 48
47042058 ACCTTTTGTT
**
47042068 GAAGACAACGAAGAAAGTGAAGCCTATGAACCAGAAGAAGAAGAAGAA
1 GAAGACAACGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAA
* **
47042116 GAAGATATTGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAA
1 GAAGACAACGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAA
47042164 GAAGA
1 GAAGA
47042169 ATTAATGGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.55, C:0.09, G:0.27, T:0.09
Consensus pattern (48 bp):
GAAGACAACGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAA
Found at i:47045315 original size:16 final size:16
Alignment explanation
Indices: 47045280--47045314 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
47045270 ATAAATAATC
*
47045280 AAAATGATTCAAACCT
1 AAAATGATCCAAACCT
47045296 AAAATGATCCAAA-CT
1 AAAATGATCCAAACCT
47045311 AAAA
1 AAAA
47045315 AAAATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.57, C:0.17, G:0.06, T:0.20
Consensus pattern (16 bp):
AAAATGATCCAAACCT
Found at i:47049827 original size:15 final size:16
Alignment explanation
Indices: 47049807--47049836 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47049797 CACTGATGAG
47049807 TCAGTT-CATAGAAAC
1 TCAGTTCCATAGAAAC
47049822 TCAGTTCCATAGAAA
1 TCAGTTCCATAGAAA
47049837 TCTGACTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (16 bp):
TCAGTTCCATAGAAAC
Found at i:47050291 original size:45 final size:45
Alignment explanation
Indices: 47050242--47050328 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
47050232 TCGAAGACAA
*
47050242 TGAAGAAAGTGAAACCTATGAACCAGAAGAAGAAGAAGAAGATAT
1 TGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAAGATAT
47050287 TGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAAGA
1 TGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAAGA
47050329 ATTAATGGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.55, C:0.08, G:0.25, T:0.11
Consensus pattern (45 bp):
TGAAGAAAGTGAAAACTATGAACCAGAAGAAGAAGAAGAAGATAT
Found at i:47052390 original size:20 final size:20
Alignment explanation
Indices: 47052367--47052405 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47052357 TTTTAAAATT
47052367 TATTTTTTAAAGAAAAATAC
1 TATTTTTTAAAGAAAAATAC
*
47052387 TATTTTTTAAGGAAAAATA
1 TATTTTTTAAAGAAAAATA
47052406 TTAAAAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (20 bp):
TATTTTTTAAAGAAAAATAC
Found at i:47056259 original size:3 final size:3
Alignment explanation
Indices: 47056251--47056350 Score: 94
Period size: 3 Copynumber: 32.3 Consensus size: 3
47056241 CCTATGAACC
*
47056251 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA TATTGA AGA A-A GGGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -A--GA AGA AGA -AGA
* ** * **
47056299 ACA CTA TGA ACC AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
47056347 AGA A
1 AGA A
47056351 TTAATGGAAG
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
2 1 0.01
3 74 0.93
4 2 0.03
5 1 0.01
6 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.30, T:0.05
Consensus pattern (3 bp):
AGA
Found at i:47061700 original size:18 final size:18
Alignment explanation
Indices: 47061679--47061727 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
47061669 TTATTATAAC
47061679 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
47061697 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
47061715 TA-TTATATATATC
1 TATTTATATATATC
47061728 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:47061700 original size:33 final size:35
Alignment explanation
Indices: 47061663--47061727 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
47061653 CCTATTATTA
47061663 TTATTAT-TA-TTATAAC-TATTTATATATATCATC
1 TTATTATATATTTATAACTTA-TTATATATATCATC
*
47061696 TTATTATATATTTATATCTTATTATATATATC
1 TTATTATATATTTATAACTTATTATATATATC
47061728 TATATATCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 2 0.07
35 17 0.61
36 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTATATATTTATAACTTATTATATATATCATC
Found at i:47064701 original size:33 final size:33
Alignment explanation
Indices: 47064659--47064724 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
47064649 AAATTTCAGG
*
47064659 ATACTCGGGCTCGAGAAGTCGTCTTGGGAAAGA
1 ATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGA
47064692 ATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGA
1 ATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGA
47064725 GTCTACTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (33 bp):
ATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGA
Found at i:47069778 original size:86 final size:87
Alignment explanation
Indices: 47069633--47070019 Score: 598
Period size: 87 Copynumber: 4.5 Consensus size: 87
47069623 AAATCAGTGA
* * *
47069633 AGATCGAAAATAAAGCCTTGCATTCATTGGTTGCAGTGGAGCTGGTTAAAGA-ATCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
47069697 CTTACTGCATTAACAGCGAAGC
66 CTTCCTGCATTAACAACGAAGC
47069719 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
47069783 CTTCCTGCATTAACAACGAAGC
66 CTTCCTGCATTAACAACGAAGC
* * *
47069805 AGATCGAAAACAAAGCATTGCCTTCATTGGTTGCAGTGGAGCTGGTCAAAGATAGCATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
47069870 ATTCCTGAATTAACAACGAAGC
66 CTTCCTGCATTAACAACGAAGC
* * * *
47069892 AGATCGAAAACAAAGCCTTGCCTTCATTGGCTGCAATGGAGCTAGTTGAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
47069957 TTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCATTAACAACGAAGC
* *
47069979 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAG
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAG
47070020 TAGATTGAAG
Statistics
Matches: 276, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
86 131 0.47
87 145 0.53
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAACGAAGC
Found at i:47069782 original size:43 final size:42
Alignment explanation
Indices: 47069649--47069786 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 42
47069639 AAAATAAAGC
*
47069649 CTTGCATTCATTGGTTGCAGTGGAGCTGGTTAAAGAATCAGAT
1 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAA-CAGAT
* * * * * * * ** * *
47069692 CTTGCCTT-ACTGCATTAACAGCGAAGCAGATCGAA-AACAAAGC
1 CTTGCCTTCATTG-GTT-GCAGTGGAGCTGGTTAAAGAACAGA-T
47069735 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAA-CAGAT
47069778 CTTGCCTTC
1 CTTGCCTTC
47069787 CTGCATTAAC
Statistics
Matches: 66, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
42 17 0.26
43 32 0.48
44 17 0.26
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAACAGAT
Found at i:47069921 original size:173 final size:173
Alignment explanation
Indices: 47069633--47070019 Score: 596
Period size: 173 Copynumber: 2.2 Consensus size: 173
47069623 AAATCAGTGA
* * * * *
47069633 AGATCGAAAATAAAGCCTTGCATTCATTGGTTGCAGTGGAGCTGGTTAAAGAATCAGATCTTGCC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTCAAAGAAGCAGATCTTGCA
* * * * *
47069698 TTACTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTG
66 TTACTGAATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTTCATTGGCTGCAATGGAGCTA
47069763 GTTAAAGA-AGCAGATCTTGCCTTCCTGCATTAACAACGAAGC
131 GTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAACGAAGC
* *
47069805 AGATCGAAAACAAAGCATTGCCTTCATTGGTTGCAGTGGAGCTGGTCAAAGATAGCATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTCAAAGA-AGCAGATCTTGC
*
47069870 ATTCCTGAATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTTCATTGGCTGCAATGGAGCT
65 ATTACTGAATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTTCATTGGCTGCAATGGAGCT
* * *
47069935 AGTTGAAGATAGCAGATCTTGCTTTCCTGCGTTAACAACGAAGC
130 AGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAACGAAGC
* *
47069979 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAG
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAG
47070020 TAGATTGAAG
Statistics
Matches: 194, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
172 48 0.25
173 76 0.39
174 70 0.36
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (173 bp):
AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTCAAAGAAGCAGATCTTGCA
TTACTGAATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTTCATTGGCTGCAATGGAGCTA
GTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAACGAAGC
Found at i:47070266 original size:44 final size:44
Alignment explanation
Indices: 47070007--47070554 Score: 204
Period size: 44 Copynumber: 12.3 Consensus size: 44
47069997 TGCCTCCATC
* *
47070007 GGTTGCAGTGGAGTAGATTGAAGCCAGAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * * * * ** * *
47070051 GATTGCAGCGGAGCAGATTAAAGACA-CTATCCTATCTCCCTAA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* ** *** * *
47070094 AGTTACAGTGGAGTGGATT-AAAATAAAGGATCTTATCTCTCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGA-GATCTTATCTCCCTGA
* ** * * * * *
47070138 AGTTACAGCAGAGTAGATCGCA-TCAG-G-TCTTATCTCCTTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * ** * *
47070179 GGTTATAGTGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGA
*
47070225 GGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * ** * ** *
47070269 GATTACAGCGGAGCAGATCAAAGACA-CTATCCTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * *** * *
47070312 AGTTACAGTGGAGCGGATTGAAATAAAAGATCTTATCTCTCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * * * *
47070356 AGTTACAGCAGAGTAGATCGCATCAGATTAAAACCA-AGGATCTTATCTCTCTGA
1 GGTT--A-C--AGT-G---G-AGCAGATTGAAGCCAGA-GATCTTATCTCCCTGA
* * * * * *
47070410 AGTTACAGTAGAACAGATTGCA-CCAG-G-TCTTATTTCCCTAA
1 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
* * * * *
47070451 GATTACAGTGGAACAGACTGAAG-AATTTCAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGA
* * * *
47070497 GATTACAGCGGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCTGA
*
47070541 GATTACAGTGGAGC
1 GGTTACAGTGGAGC
47070555 GAATTAAAAT
Statistics
Matches: 375, Mismatches: 98, Indels: 62
0.70 0.18 0.12
Matches are distributed among these distances:
41 58 0.15
42 6 0.02
43 60 0.16
44 138 0.37
45 5 0.01
46 64 0.17
47 3 0.01
49 6 0.02
50 1 0.00
51 1 0.00
52 1 0.00
53 2 0.01
54 30 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
Found at i:47070305 original size:87 final size:87
Alignment explanation
Indices: 47070214--47070374 Score: 216
Period size: 87 Copynumber: 1.9 Consensus size: 87
47070204 TTTCAGATCT
* * * *
47070214 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTG-AGATTACAGC
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAG-TTACAGC
*
47070278 GGAGCAGATCAAAGACACTATCC
65 AGAGCAGATCAAAGACACTATCC
* * * *
47070301 TATCTCCCTGAAGTTACAGTGGAGCGGATTGAAATAAAAGATCTTATCTCTCTGAAGTTACAGCA
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAGTTACAGCA
*
47070366 GAGTAGATC
66 GAGCAGATC
47070375 GCATCAGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 61 0.97
88 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTAGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAGTTACAGCA
GAGCAGATCAAAGACACTATCC
Found at i:47070504 original size:46 final size:44
Alignment explanation
Indices: 47070437--47070552 Score: 126
Period size: 46 Copynumber: 2.6 Consensus size: 44
47070427 TTGCACCAGG
* * *
47070437 TCTTATTTCCCTAAGATTACAGTGGAACAGACTGAAGA-ATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGATA-GT-A-A
* * * *
47070483 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGATAGTAA
*
47070527 TCCTATCTCCCTGAGATTACAGTGGA
1 TCTTATCTCCCTGAGATTACAGTGGA
47070553 GCGAATTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
44 25 0.42
45 1 0.02
46 33 0.55
47 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGATAGTAA
Found at i:47070578 original size:44 final size:44
Alignment explanation
Indices: 47070437--47070602 Score: 117
Period size: 44 Copynumber: 3.7 Consensus size: 44
47070427 TTGCACCAGG
* * * * *
47070437 TCTTATTTCCCTAAGATTACAGTGGAACAGACTGAAGAAT-TTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-AATAGT--GA
* ** *
47070483 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGTGA
*
47070527 TCCTATCTCCCTGAGATTACAGTGGAGC-GAATT-AAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAAAT--AGTGA
* * *
47070571 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGAT
47070603 CGCATCAGGT
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 55 0.57
45 4 0.04
46 32 0.33
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGTGA
Found at i:47072319 original size:18 final size:18
Alignment explanation
Indices: 47072298--47072346 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
47072288 TTATTATAAC
47072298 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
47072316 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
47072334 TA-TTATATATATC
1 TATTTATATATATC
47072347 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:47072319 original size:33 final size:35
Alignment explanation
Indices: 47072282--47072346 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
47072272 CCTATTATTA
47072282 TTATTAT-TA-TTATAAC-TATTTATATATATCATC
1 TTATTATATATTTATAACTTA-TTATATATATCATC
*
47072315 TTATTATATATTTATATCTTATTATATATATC
1 TTATTATATATTTATAACTTATTATATATATC
47072347 TATATATCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 2 0.07
35 17 0.61
36 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTATATATTTATAACTTATTATATATATCATC
Found at i:47074684 original size:26 final size:26
Alignment explanation
Indices: 47074637--47074686 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
47074627 GCTAACAGTT
* *
47074637 AGACTTAAATTTTGAAATTAAAAAAA
1 AGACTTAAATTTTAAAAATAAAAAAA
47074663 AGAC-TAAATTTCTAAAAATAAAAA
1 AGACTTAAATTT-TAAAAATAAAAA
47074687 TTTAACCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (26 bp):
AGACTTAAATTTTAAAAATAAAAAAA
Found at i:47077029 original size:6 final size:6
Alignment explanation
Indices: 47077018--47077044 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47077008 GAAGTGATAG
47077018 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
47077045 TCATCTACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:47084354 original size:2 final size:2
Alignment explanation
Indices: 47084347--47084389 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
47084337 CAAACAAACG
47084347 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47084389 G
1 G
47084390 TTAGTATACC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:47084634 original size:2 final size:2
Alignment explanation
Indices: 47084627--47084662 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
47084617 GGAACCTTAT
47084627 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
47084663 AAAGATGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:47084940 original size:37 final size:38
Alignment explanation
Indices: 47084865--47084952 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
47084855 GTGTTCATGT
* * * * *
47084865 TTCTTTATTTGTGCGAATCCTCGTAATAGAATCTGTAA
1 TTCTTTATTTATACCAATCCTCATAATAGAATCGGTAA
*
47084903 TTCTTTATTTATACCAAT-CTCATAATGGAATCGGTAA
1 TTCTTTATTTATACCAATCCTCATAATAGAATCGGTAA
*
47084940 TTCAGTTATTTAT
1 TTC-TTTATTTAT
47084953 TACTAATGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
37 19 0.45
38 23 0.55
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.44
Consensus pattern (38 bp):
TTCTTTATTTATACCAATCCTCATAATAGAATCGGTAA
Found at i:47085579 original size:15 final size:14
Alignment explanation
Indices: 47085559--47085619 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
47085549 TTGTTAATTG
47085559 TAATTAACTTTTAAT
1 TAATTAA-TTTTAAT
*
47085574 TAATTAAAGTTTAAT
1 TAATT-AATTTTAAT
* * *
47085589 TAAATAATTGTGAT
1 TAATTAATTTTAAT
47085603 TAATTATATTTTAAT
1 TAATTA-ATTTTAAT
47085618 TA
1 TA
47085620 CAAGTATATA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
14 11 0.31
15 23 0.64
16 2 0.06
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (14 bp):
TAATTAATTTTAAT
Found at i:47088273 original size:24 final size:24
Alignment explanation
Indices: 47088109--47088274 Score: 65
Period size: 24 Copynumber: 6.8 Consensus size: 24
47088099 CGTCCCGTTA
47088109 TATGGCTCTTTATGAGCTTCCTGAT
1 TATGGCTC-TTATGAGCTTCCTGAT
** *
47088134 TAATGGCTC-TCCGAAGCTTCCCGA-
1 T-ATGGCTCTTATG-AGCTTCCTGAT
* * *
47088158 TATAGCTCGCT-TGAACTT-CTCGAT
1 TATGGCTC-TTATGAGCTTCCT-GAT
* **
47088182 ATATGGCTATTCGGAGCTTCCTG-T
1 -TATGGCTCTTATGAGCTTCCTGAT
* ** *
47088206 TAATGTCTCTTCGGAGCTACCTG-T
1 T-ATGGCTCTTATGAGCTTCCTGAT
** * *
47088230 TATTGGCTCGCACGAACTTCCTGAT
1 TA-TGGCTCTTATGAGCTTCCTGAT
47088255 TATGGCTCTTATGAGCTTCC
1 TATGGCTCTTATGAGCTTCC
47088275 CGTTATACAG
Statistics
Matches: 103, Mismatches: 26, Indels: 25
0.67 0.17 0.16
Matches are distributed among these distances:
22 1 0.01
23 14 0.14
24 53 0.51
25 26 0.25
26 9 0.09
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
TATGGCTCTTATGAGCTTCCTGAT
Found at i:47094223 original size:16 final size:16
Alignment explanation
Indices: 47094180--47094224 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
47094170 AAATTATAAA
*
47094180 AAAAATTCAAAAATTT
1 AAAAATTCAAAAATAT
* *
47094196 AAAATTTTAAAAATAT
1 AAAAATTCAAAAATAT
47094212 AAAAATTCAAAAA
1 AAAAATTCAAAAA
47094225 AATCAACATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATTCAAAAATAT
Found at i:47096427 original size:24 final size:25
Alignment explanation
Indices: 47096374--47096432 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
47096364 TGGATGAGTT
*
47096374 GAAAGAAGAA-GATGAAGAAGAGCA
1 GAAAGAAGAAGGCTGAAGAAGAGCA
* *
47096398 GGAAG-AGAAGGCTGAAGAAGAGCC
1 GAAAGAAGAAGGCTGAAGAAGAGCA
47096422 GAAAGAAGAAG
1 GAAAGAAGAAG
47096433 AAGATGAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.14
24 20 0.69
25 5 0.17
ACGTcount: A:0.53, C:0.07, G:0.37, T:0.03
Consensus pattern (25 bp):
GAAAGAAGAAGGCTGAAGAAGAGCA
Found at i:47096497 original size:21 final size:21
Alignment explanation
Indices: 47096448--47096497 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
47096438 GAAGAGGAAC
*
47096448 ATGAAGAAAAGGATGGAGATG
1 ATGAAGAGAAGGATGGAGATG
*
47096469 ATGAAGAGAAGGATGGGGATG
1 ATGAAGAGAAGGATGGAGATG
47096490 ATGAAGAG
1 ATGAAGAG
47096498 GAACAAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.42, T:0.14
Consensus pattern (21 bp):
ATGAAGAGAAGGATGGAGATG
Found at i:47099074 original size:15 final size:15
Alignment explanation
Indices: 47099054--47099121 Score: 82
Period size: 15 Copynumber: 4.5 Consensus size: 15
47099044 GGATGAGTCT
* *
47099054 GAAGAAGAGGAGGAG
1 GAAGAAGAAGAGAAG
*
47099069 GAAGAAGAAGAAAAG
1 GAAGAAGAAGAGAAG
47099084 GAAGAAGAAGAGAAG
1 GAAGAAGAAGAGAAG
* * *
47099099 GAAGAGGAACAGAAT
1 GAAGAAGAAGAGAAG
47099114 GAAGAAGA
1 GAAGAAGA
47099122 GAAAAATGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.57, C:0.01, G:0.40, T:0.01
Consensus pattern (15 bp):
GAAGAAGAAGAGAAG
Found at i:47099102 original size:27 final size:27
Alignment explanation
Indices: 47099072--47099124 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47099062 GGAGGAGGAA
47099072 GAAGAAGAAAAGGAA-GAAGAAGAGAAG
1 GAAGAAGAAAA-GAATGAAGAAGAGAAG
* *
47099099 GAAGAGGAACAGAATGAAGAAGAGAA
1 GAAGAAGAAAAGAATGAAGAAGAGAA
47099125 AAATGAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.60, C:0.02, G:0.36, T:0.02
Consensus pattern (27 bp):
GAAGAAGAAAAGAATGAAGAAGAGAAG
Found at i:47110708 original size:21 final size:21
Alignment explanation
Indices: 47110682--47110722 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
47110672 ATCTGCTCAA
* *
47110682 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
47110703 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
47110723 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:47118327 original size:23 final size:23
Alignment explanation
Indices: 47118264--47118328 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
47118254 TTTTAATGTA
* *
47118264 TGAAATATAAATTTTAAATATTTG
1 TGAAAT-TTAATTTTAATTATTTG
* *
47118288 T-AAGTAATTAATATTAATTATTTG
1 TGAA--ATTTAATTTTAATTATTTG
47118312 TGAAATTTAATTTTAAT
1 TGAAATTTAATTTTAAT
47118329 ATATAATCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
23 13 0.41
24 16 0.50
25 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (23 bp):
TGAAATTTAATTTTAATTATTTG
Found at i:47121783 original size:16 final size:16
Alignment explanation
Indices: 47121751--47121787 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
47121741 ATGCATATAC
47121751 ATATACATATATATGT
1 ATATACATATATATGT
* *
47121767 ATATGCATATATGTGT
1 ATATACATATATATGT
47121783 ATATA
1 ATATA
47121788 TATGATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (16 bp):
ATATACATATATATGT
Found at i:47123714 original size:44 final size:46
Alignment explanation
Indices: 47123621--47123715 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 46
47123611 ACAGAGCTAT
* * * *
47123621 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATCACTAATTCAATTGTTTGATTGAATAG
**
47123667 AATGAAATAGAACTGTAAT-ACT-ATTCTTTTGTTTGATTGAATAG
1 AATGAAATAGAACTGTAATCACTAATTCAATTGTTTGATTGAATAG
47123711 AATGA
1 AATGA
47123716 TGTTGTAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 23 0.53
45 2 0.05
46 18 0.42
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (46 bp):
AATGAAATAGAACTGTAATCACTAATTCAATTGTTTGATTGAATAG
Found at i:47131315 original size:73 final size:73
Alignment explanation
Indices: 47131217--47131362 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 73
47131207 AATTAGGGAA
* *
47131217 AGAACAGTTACTTAATAGGAAAAGCTAGGTTGATTTATTTTTTATAAAACAAGAAAACATCAAAG
1 AGAAAAGTTACTTAATAGAAAAAGCTAGGTTGATTTATTTTTTATAAAACAAGAAAACATCAAAG
47131282 CATTGATG
66 CATTGATG
*
47131290 AGAAAAGTTGCTTAATAGAAAAAGCTAGGTTGATTTATTTTTTATAAAACAAGAAAACATCAAAG
1 AGAAAAGTTACTTAATAGAAAAAGCTAGGTTGATTTATTTTTTATAAAACAAGAAAACATCAAAG
47131355 CATTGATG
66 CATTGATG
47131363 CTATCTATCT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (73 bp):
AGAAAAGTTACTTAATAGAAAAAGCTAGGTTGATTTATTTTTTATAAAACAAGAAAACATCAAAG
CATTGATG
Found at i:47132872 original size:101 final size:102
Alignment explanation
Indices: 47132697--47132890 Score: 345
Period size: 101 Copynumber: 1.9 Consensus size: 102
47132687 ATAAATGAGA
*
47132697 TGCTCTTCTCATAATTTTCTTCTTACACTCTTCTCGATTCCAACTTTGGTTACATGGAATCAGTG
1 TGCTCTTCTCATAATTTTCTTCTTACACCCTTCTCGATTCCAACTTTGGTTACATGGAATCAGTG
*
47132762 CCTTTCAGCTC-TTTTTTTTTTTTTGGGGGGGGGGGG
66 CCTTTCAGCTCATTTTTTCTTTTTTGGGGGGGGGGGG
*
47132798 TGCTCTTCTCATAATTTTCTTCTTACACCCTTCTCGATTCCTACTTTGGTTACATGGAATCAGTG
1 TGCTCTTCTCATAATTTTCTTCTTACACCCTTCTCGATTCCAACTTTGGTTACATGGAATCAGTG
47132863 CCTTTCAGCTCAATTTTTTCTTTTTTGG
66 CCTTTCAGCTC-ATTTTTTCTTTTTTGG
47132891 TTTGTGTTTC
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
101 74 0.84
103 14 0.16
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (102 bp):
TGCTCTTCTCATAATTTTCTTCTTACACCCTTCTCGATTCCAACTTTGGTTACATGGAATCAGTG
CCTTTCAGCTCATTTTTTCTTTTTTGGGGGGGGGGGG
Found at i:47136112 original size:18 final size:17
Alignment explanation
Indices: 47136091--47136125 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47136081 TTATTATTAA
*
47136091 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47136109 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47136126 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47136232 original size:18 final size:17
Alignment explanation
Indices: 47136211--47136245 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47136201 TTATTATTAA
*
47136211 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47136229 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47136246 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47136287 original size:120 final size:120
Alignment explanation
Indices: 47136074--47136295 Score: 417
Period size: 120 Copynumber: 1.9 Consensus size: 120
47136064 ATCATATTTA
47136074 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
47136139 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTGACTCAAATCATAATATATGATACTATAAAATATAAATT
*
47136194 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
47136259 TATTCTTATATTAATTGACTCAAATCATAATATATGA
66 TATTCTTATATGAATTGACTCAAATCATAATATATGA
47136296 ATTGGACCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 99 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTGACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:47136291 original size:61 final size:60
Alignment explanation
Indices: 47136106--47136298 Score: 171
Period size: 61 Copynumber: 3.2 Consensus size: 60
47136096 TTTTAATTAA
* *
47136106 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAA-TTACTCAAATCAT
* * * * ** * ** * *
47136167 AATATATGATACT-ATAAAA-T-AT-A-AATTAACATAATTATTATTAAATATATTTTAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTA-TATT-AAT-TACTCAAATCAT
47136226 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTGACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATT-ACTCAAATCAT
47136287 AATATATGAATT
1 AATATAT-AATT
47136299 GGACCAAGCA
Statistics
Matches: 97, Mismatches: 24, Indels: 21
0.68 0.17 0.15
Matches are distributed among these distances:
57 10 0.10
58 6 0.06
59 25 0.26
60 3 0.03
61 32 0.33
62 10 0.10
63 11 0.11
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTACTCAAATCAT
Found at i:47136292 original size:59 final size:59
Alignment explanation
Indices: 47136109--47136292 Score: 162
Period size: 59 Copynumber: 3.1 Consensus size: 59
47136099 TAATTAAAAT
* *
47136109 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATA
* * * * * * * * *
47136168 ATAT-ATGATACTATAAAA-TATAAATTAACATAATTATTATTAAATATATTTTAATTAAA--AT
1 ATATAAT-TTA--ATAAAATTCTTAA-TAA-TTAA-TATTCTTATAT-TAATTTACTCAAATCAT
47136229 -
59 A
*
47136229 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTGACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATA
47136288 ATATA
1 ATATA
47136293 TGAATTGGAC
Statistics
Matches: 92, Mismatches: 21, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
56 9 0.10
57 9 0.10
58 7 0.08
59 20 0.22
60 8 0.09
61 15 0.16
62 6 0.07
63 9 0.10
64 9 0.10
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATA
Found at i:47137839 original size:3 final size:3
Alignment explanation
Indices: 47137831--47137860 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
47137821 CTTAATAAAT
47137831 TTA TTA TTA TTA TTA TTA TTA TTA TATA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
47137861 TTCATTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:47138249 original size:11 final size:10
Alignment explanation
Indices: 47138236--47138271 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
47138226 GGCACATTTA
47138236 TATATATATT
1 TATATATATT
47138246 ATATATATATT
1 -TATATATATT
47138257 TATATAATATT
1 TATAT-ATATT
47138268 TATA
1 TATA
47138272 CGTATTTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TATATATATT
Found at i:47139402 original size:81 final size:79
Alignment explanation
Indices: 47139267--47139422 Score: 294
Period size: 81 Copynumber: 1.9 Consensus size: 79
47139257 AAAGATATAA
47139267 ATACATTACATGGTACTATTACAAACAGGGTGGGGAGAGAAAGAGGAACCATTACTCTTCTCTTT
1 ATACATTACATGGTACTATTACAAACAGGGTGGGGAGAGAAAGAGGAACCATTACTC-TCT-TTT
47139332 TTTTTTTTTTTTTTAC
64 TTTTTTTTTTTTTTAC
47139348 ATACATTACATGGTACTATTACAAACAGGGTGGGGAGAGAAAGAGGAACCATTACTCTCTTTTTT
1 ATACATTACATGGTACTATTACAAACAGGGTGGGGAGAGAAAGAGGAACCATTACTCTCTTTTTT
47139413 TTTTTTTTTT
66 TTTTTTTTTT
47139423 GTAGAAATCA
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
79 15 0.20
80 3 0.04
81 57 0.76
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (79 bp):
ATACATTACATGGTACTATTACAAACAGGGTGGGGAGAGAAAGAGGAACCATTACTCTCTTTTTT
TTTTTTTTTTTTAC
Found at i:47143563 original size:16 final size:16
Alignment explanation
Indices: 47143531--47143567 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
47143521 ATGCATATAC
47143531 ATATACATATATATGT
1 ATATACATATATATGT
* *
47143547 ATATGCATATATGTGT
1 ATATACATATATATGT
47143563 ATATA
1 ATATA
47143568 TATGATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (16 bp):
ATATACATATATATGT
Found at i:47148976 original size:30 final size:30
Alignment explanation
Indices: 47148936--47149009 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
47148926 TGAGGAGTGG
*
47148936 ATTCCTCCACCACCTCCTGATACTGAACAA
1 ATTCCTCCACCACCTCCTGATAATGAACAA
* *
47148966 ATTCCACCACCTCCTCCTGATAATGAACAA
1 ATTCCTCCACCACCTCCTGATAATGAACAA
* *
47148996 GTTCCTCCCCCACC
1 ATTCCTCCACCACC
47149010 ACCTAATGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.27, C:0.43, G:0.07, T:0.23
Consensus pattern (30 bp):
ATTCCTCCACCACCTCCTGATAATGAACAA
Found at i:47153623 original size:36 final size:36
Alignment explanation
Indices: 47153575--47153650 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
47153565 AAAAATGAAT
* *
47153575 AAACTTATAAAATCTTAAAAAGTTTTAAAAAG-TAA
1 AAACTAATAAAATCTTAAAAAGTTTCAAAAAGTTAA
* **
47153610 AAACTAATAAAAATTTTCCAAAGTTTCAAAAAGTTAA
1 AAACTAAT-AAAATCTTAAAAAGTTTCAAAAAGTTAA
47153647 AAAC
1 AAAC
47153651 ATTCAAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 7 0.21
36 20 0.59
37 7 0.21
ACGTcount: A:0.57, C:0.09, G:0.05, T:0.29
Consensus pattern (36 bp):
AAACTAATAAAATCTTAAAAAGTTTCAAAAAGTTAA
Found at i:47156989 original size:16 final size:15
Alignment explanation
Indices: 47156942--47156997 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
47156932 TTATTTCGTC
47156942 ATTTTAAGTTTA-AT
1 ATTTTAAGTTTAGAT
* *
47156956 A-TTTGAGTTTGGATT
1 ATTTTAAGTTTAGA-T
47156971 ATTTTAAGTTTAGAGT
1 ATTTTAAGTTTAGA-T
*
47156987 ATTTTAGGTTT
1 ATTTTAAGTTT
47156998 TGATTAAGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 8 0.24
14 2 0.06
15 2 0.06
16 21 0.64
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (15 bp):
ATTTTAAGTTTAGAT
Found at i:47162529 original size:16 final size:17
Alignment explanation
Indices: 47162503--47162537 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
47162493 CTTGAGTTTC
*
47162503 TTGAGTTATTTTAGGTT
1 TTGAGTTATTTTAGATT
47162520 TTGA-TTATTTTAGATT
1 TTGAGTTATTTTAGATT
47162536 TT
1 TT
47162538 AATCAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (17 bp):
TTGAGTTATTTTAGATT
Found at i:47162625 original size:22 final size:22
Alignment explanation
Indices: 47162607--47162648 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
47162597 TTGAATTCGA
47162607 ATAAATTT-GATTTTAAATTAG
1 ATAAATTTAGATTTTAAATTAG
*
47162628 ATAAGTTTAGATTATTAAATT
1 ATAAATTTAGATT-TTAAATT
47162649 TTATAGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
ATAAATTTAGATTTTAAATTAG
Found at i:47166239 original size:4 final size:4
Alignment explanation
Indices: 47166230--47166262 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
47166220 TCTCCAATAA
47166230 AAAT AAAT AAAT AAAT AAAT AAAT -AAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
47166263 GCAAACAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:47179049 original size:192 final size:192
Alignment explanation
Indices: 47178713--47179093 Score: 683
Period size: 192 Copynumber: 2.0 Consensus size: 192
47178703 CAAACTGATG
47178713 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
* *
47178778 ACTTGTTCAGAAGTTTTTTGTTTTAATCAAACTCAGTGCATGTTTTGAAAGAATAAAAATTGGCA
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
* * *
47178843 AAACGCTTATAGATGTTTAGCAAGACTAAAGTTAGAAAACACTTATTTAAAACCCAGAAGTT
131 AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
47178905 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
47178970 ACTTGTTCAGAAG-CTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAAATTGGC
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAAT-AAAAATTGGC
* *
47179034 AAAACTCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACATTTATTTAAAACCCAGAA
130 AAAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAA
47179094 TTTGAATTCA
Statistics
Matches: 181, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
191 38 0.21
192 143 0.79
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (192 bp):
ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
Found at i:47179830 original size:59 final size:59
Alignment explanation
Indices: 47179738--47179852 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 59
47179728 AATTGTGGAC
* *
47179738 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATGTGGTCAAGCCACTAT
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
*
47179797 ATTGCCACCAGAATTGCAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
47179853 CAGATAGTGC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (59 bp):
ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
Found at i:47190545 original size:27 final size:27
Alignment explanation
Indices: 47190515--47190791 Score: 376
Period size: 27 Copynumber: 10.3 Consensus size: 27
47190505 CATAATCATG
** * * *
47190515 ATTTTACCAAACAGGGGTATTACGTTT
1 ATTTTACCCTACAGGGGCATTACGGTC
*
47190542 ATTTTACCCTACAGGAGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
47190569 ATTTTACCCTACAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
47190596 ATTTTACCCTACAAGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
47190623 ATTTTACCCTATAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
47190650 ATTTTACCCTATAGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
47190677 ATTTTACCCTACAAGGGCATTA-GGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * *
47190703 ATTTTATCCTACATGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
47190730 ATTTTACCCTACAGGGGCATTACGGTT
1 ATTTTACCCTACAGGGGCATTACGGTC
*
47190757 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
47190784 ATTTTACC
1 ATTTTACC
47190792 TTTTTAGGGT
Statistics
Matches: 222, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.10
27 200 0.90
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGCATTACGGTC
Found at i:47200100 original size:3 final size:3
Alignment explanation
Indices: 47200092--47200128 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
47200082 GTAGACGAGG
47200092 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47200129 AAAAGCGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47208878 original size:14 final size:14
Alignment explanation
Indices: 47208859--47208886 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47208849 CCAATTTATT
47208859 AATGAATTATTAAA
1 AATGAATTATTAAA
47208873 AATGAATTATTAAA
1 AATGAATTATTAAA
47208887 TATAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:47220505 original size:26 final size:25
Alignment explanation
Indices: 47220475--47220525 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
47220465 TCACAGCCTT
47220475 TCCCTACATGTATCTCATATCATTC
1 TCCCTACATGTATCTCATATCATTC
47220500 NTCCCTACATGTATCTCATATCATTC
1 -TCCCTACATGTATCTCATATCATTC
47220526 CATAACATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.31, G:0.04, T:0.39
Consensus pattern (25 bp):
TCCCTACATGTATCTCATATCATTC
Found at i:47224972 original size:76 final size:76
Alignment explanation
Indices: 47224888--47226001 Score: 1475
Period size: 76 Copynumber: 14.6 Consensus size: 76
47224878 ACAATTCCTT
* * * * * * *
47224888 TTTCTATTTTTTAAAAATCAATTCATAATCCGAGAGATGAGTTGAGCCTCGAGTCGCACGCCGGG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47224953 GTATTTTTCAA
66 GTATTTTTCAA
* * * * * * * *
47224964 TTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGGTCGCGCGCTGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225029 GTATTTTTCAA
66 GTATTTTTCAA
47225040 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
47225105 ATATTTTTCAA
66 GTATTTTTCAA
** **
47225116 TTTCTGTTTTTCAAAAATTCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGGTCACACGTTGA
1 TTTCTGTTTTTCAAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
47225181 GGTATTCTTCAA
65 GGTATTTTTCAA
* * ** * * *
47225193 TTTTTATTTTAAAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCACAGGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
47225258 GTATTTTTCCA
66 GTATTTTTCAA
* * * * *
47225269 TTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTCGAGTCACACACCGA
1 TTTCTGTTTTTC-AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
47225334 GGTA-TTTTCAA
65 GGTATTTTTCAA
* * * * *
47225345 TTTTTATTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225410 GTATTTTT-AA
66 GTATTTTTCAA
* *
47225420 TTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225485 GTA-TTTTCAA
66 GTATTTTTCAA
* * *
47225495 TTTATGTTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGTTGAGCCTCGGGTCACACGCCCA
1 TTTCTG-TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
47225560 GGAATTTTTCAA
65 GGTATTTTTCAA
* * * * *
47225572 TTTCTATTTTTTTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTAAGCCTTGGGTCACATG
1 TTTC-----TGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
* *
47225637 TCGAGATATTTTTCAA
61 CCGAGGTATTTTTCAA
* * * ** *
47225653 TTTCTGTTTTCCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCCTCAAGT-AGCACGCTGA
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCA-CACGCCGA
47225717 GGTATTTTT-AA
65 GGTATTTTTCAA
* *
47225728 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225793 GTATTTTTCAA
66 GTATTTTTCAA
* *
47225804 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225869 GTATTTTTCAA
66 GTATTTTTCAA
* *** *
47225880 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGTCGTGCGCTGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
47225945 GTA-TTTTCAA
66 GTATTTTTCAA
* **
47225955 TTTCTATTTTTCAAGGATCAACTCATAATCCGAGAGGTGAGTTGAGC
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGC
47226002 TTCGAGTTGT
Statistics
Matches: 920, Mismatches: 104, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
74 4 0.00
75 238 0.26
76 487 0.53
77 125 0.14
81 65 0.07
82 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (76 bp):
TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
GTATTTTTCAA
Found at i:47225488 original size:227 final size:228
Alignment explanation
Indices: 47224887--47226044 Score: 1461
Period size: 227 Copynumber: 5.1 Consensus size: 228
47224877 AACAATTCCT
* * * * * * * *
47224887 TTTTCTATTTTTTAAAAATCAATTCATAATCCGAGAGATGAGTTGAGCCTCGAGTCGCACGCCGG
1 TTTT-TATTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGA
* * * * *
47224952 GGTATTTTTCAATTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGG
65 GGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGG
* * *
47225017 TCGCGCGCTGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGT
130 TCACACGCTGAGGTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGT
*
47225082 TGAGCCTCGGGTCACACGCCGAGATATTTTTCAA
195 TGAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
* * *
47225116 TTTCTGTTTTTCAAAAATTCAACTCATAATAT-GAGAGGTGAGTTGAGCCTCGGGTCACACGTTG
1 TTTTTATTTTTCAAAAA-TCAACTCATAAT-TCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCG
* * * ** * *
47225180 AGGTATTCTTCAATTTTTATTTTAAAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGG
64 AGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGG
* * * * *
47225245 GTCACAGGCCGAGGTATTTTTCCATTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGA
129 GTCACACGCTGAGGTATTTTTCAATTTCTATTTTTC-AAAAATCAACTCATAATCCGAGAGGTGA
* *
47225310 GTTGAGCCTCGAGTCACACACCGAGGTA-TTTTCAA
193 GTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
* * *
47225345 TTTTTATTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
1 TTTTTATTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAG
* *
47225410 GTATTTTT-AATTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
66 GTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
* * * *
47225474 CACACGCCGAGGTA-TTTTCAATTTATGTTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGT
131 CACACGCTGAGGTATTTTTCAATTTCT-ATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGT
* *
47225538 TGAGCCTCGGGTCACACGCCCAGGAATTTTTCAA
195 TGAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
* * * *
47225572 TTTCTATTTTTTTTTTCAAAAATCAACTCATAA-TCTGAGAGGTGAGTTAAGCCTTGGGTCACAT
1 ----T-TTTTATTTTTCAAAAATCAACTCATAATTC-GAGAGGTGAGTTGAGCCTCGGGTCACAC
* * * *
47225636 GTCGAGATATTTTTCAATTTCTGTTTTCCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCC
60 GTCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCC
** *
47225701 TCAAGT-AGCACGCTGAGGTATTTTT-AATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAG
125 TCGGGTCA-CACGCTGAGGTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAG
* *
47225764 GTGAGTTGAGCTTCGGGTCACACGTCGAGGTATTTTTCAA
189 GTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
* * * *
47225804 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTTTATTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAG
*
47225869 GTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGT
66 GTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
*** **
47225934 CGTGCGCTGAGGTA-TTTTCAATTTCTATTTTTCAAGGATCAACTCATAATCCGAGAGGTGAGTT
131 CACACGCTGAGGTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTT
* * *** * *
47225998 GAGCTTCGAGTTGTACGCCGAGCTA-TTTCCAA
196 GAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
*
47226030 TTTTCATTTTTCAAA
1 TTTTTATTTTTCAAA
47226045 TAAAAAATAA
Statistics
Matches: 803, Mismatches: 108, Indels: 39
0.85 0.11 0.04
Matches are distributed among these distances:
226 81 0.10
227 261 0.33
228 62 0.08
229 148 0.18
230 51 0.06
231 3 0.00
232 127 0.16
233 66 0.08
234 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (228 bp):
TTTTTATTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAG
GTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
CACACGCTGAGGTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTT
GAGCCTCGGGTCACACGCCGAGGTATTTTTCAA
Found at i:47226379 original size:30 final size:29
Alignment explanation
Indices: 47226343--47226452 Score: 139
Period size: 30 Copynumber: 3.7 Consensus size: 29
47226333 ATAAAAAATT
47226343 TAAAATTATATTTTGACCCCTTAACTTTTC
1 TAAAATTATATTTTGACCCCTTAA-TTTTC
* * *
47226373 TAAAATTATATTTTAACCCATAAATTTTCC
1 TAAAATTATATTTTGACCCCTTAATTTT-C
*
47226403 TAAAATTATATTTTGACACCTTAATTTTC
1 TAAAATTATATTTTGACCCCTTAATTTTC
* *
47226432 ATAAAATTACATTTTGGCCCC
1 -TAAAATTATATTTTGACCCC
47226453 AGAAGTTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
29 5 0.07
30 63 0.93
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.44
Consensus pattern (29 bp):
TAAAATTATATTTTGACCCCTTAATTTTC
Found at i:47226954 original size:23 final size:23
Alignment explanation
Indices: 47226891--47226965 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
47226881 CTAGGGTTTG
*
47226891 AAAAGAAGAGGAAAAAGGAAA-GAA
1 AAAAGAAGAAGAAAAA--AAAGGAA
*
47226915 AGGAAGAAGAAGAAAAAAAAAGGAA
1 A-AAAGAAGAAG-AAAAAAAAGGAA
47226940 AAAAGAA-AAGAAAAAAAAGGAA
1 AAAAGAAGAAGAAAAAAAAGGAA
47226962 AAAA
1 AAAA
47226966 ATAAAAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
22 16 0.36
23 3 0.07
24 9 0.20
25 12 0.27
26 5 0.11
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAAGAAGAAGAAAAAAAAGGAA
Found at i:47226956 original size:22 final size:24
Alignment explanation
Indices: 47226891--47226965 Score: 84
Period size: 25 Copynumber: 3.2 Consensus size: 24
47226881 CTAGGGTTTG
* *
47226891 AAAAGAAGAGGAAAAAGGAAA-GAA
1 AAAAGAAGAAGAAAAA-AAAAGGAA
*
47226915 AGGAAGAAGAAGAAAAAAAAAGGAA
1 A-AAAGAAGAAGAAAAAAAAAGGAA
47226940 AAAAGAA-AAG-AAAAAAAAGGAA
1 AAAAGAAGAAGAAAAAAAAAGGAA
47226962 AAAA
1 AAAA
47226966 ATAAAAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
22 16 0.36
23 3 0.07
24 9 0.20
25 17 0.38
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (24 bp):
AAAAGAAGAAGAAAAAAAAAGGAA
Found at i:47227328 original size:15 final size:15
Alignment explanation
Indices: 47227307--47227342 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
47227297 CAGCAGCAGA
*
47227307 AAAAAAAAGAGAAAAG
1 AAAAAAAGGA-AAAAG
47227323 AAAAAAAGGAAAAAG
1 AAAAAAAGGAAAAAG
47227338 AAAAA
1 AAAAA
47227343 GAGCCCGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAGGAAAAAG
Found at i:47227515 original size:15 final size:15
Alignment explanation
Indices: 47227476--47227516 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
47227466 TTTAAATAGT
*
47227476 TTTTTTAATATTTTA
1 TTTTTTAATTTTTTA
**
47227491 TTTTACAATTTTTTA
1 TTTTTTAATTTTTTA
47227506 TTTTTTAATTT
1 TTTTTTAATTT
47227517 AAATAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTAATTTTTTA
Found at i:47229968 original size:96 final size:91
Alignment explanation
Indices: 47229799--47230054 Score: 310
Period size: 84 Copynumber: 2.8 Consensus size: 91
47229789 CTAGGAAGCT
* * * **
47229799 TGAGGCATGGTCTTGACAGACAATTGGTAGAGGTGCCAAGAACCTTGAATGGTAACTTGCCTTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
47229864 ATGCATGAGCACAAGCATGAGCATGAACAAG
66 ATGCATGAG--C-A--ATGAGCATGAACAAG
* * * *
47229895 TGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
47229960 ATG--T-----ATGAGCATGAACAAG
66 ATGCATGAGCAATGAGCATGAACAAG
* * *
47229979 CGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
47230044 ATGCATGAGCA
66 ATGCATGAGCA
47230055 TGAAAATAGT
Statistics
Matches: 138, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
84 76 0.55
86 1 0.01
94 1 0.01
96 60 0.43
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (91 bp):
TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
ATGCATGAGCAATGAGCATGAACAAG
Found at i:47230021 original size:84 final size:84
Alignment explanation
Indices: 47229878--47230215 Score: 419
Period size: 84 Copynumber: 4.1 Consensus size: 84
47229868 ATGAGCACAA
* * * * *
47229878 GCATGAGCATGAACAAGTGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAA
1 GCATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
47229943 ATGATAACTTGTATTACAT
66 ATGGTAACTTGTATTACAT
* * * *
47229962 GTATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTAC
1 GCATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
47230027 ATGGTAACTTGTATTACAT
66 ATGGTAACTTGTATTACAT
* *
47230046 GCATGAGCATG---AA---A---ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAA
1 GCATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
47230102 ATGGTAACTCGTATTACAT
66 ATGGTAACTTGTATTACAT
* * * * *
47230121 GCATGAGCA-CAAGCCAGCGAGGCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTG
1 GCATGAGCATGAA-CAAGCGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTA
*
47230184 AATGGTAACTTGTAGTACAT
65 AATGGTAACTTGTATTACAT
47230204 GCATGAGCATGA
1 GCATGAGCATGA
47230216 GCATGAACTT
Statistics
Matches: 220, Mismatches: 23, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
75 64 0.29
78 2 0.01
81 3 0.01
83 62 0.28
84 89 0.40
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.22
Consensus pattern (84 bp):
GCATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
ATGGTAACTTGTATTACAT
Found at i:47230085 original size:75 final size:76
Alignment explanation
Indices: 47229985--47230215 Score: 270
Period size: 75 Copynumber: 2.9 Consensus size: 76
47229975 CAAGCGAGGC
* * *
47229985 ATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTA-ATGGTAACTTGTATTACATGCAT
47230050 GAGCATGAA-A-
65 GAGCATGAACAG
* *
47230060 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATGCAT
*
47230125 GAGCA-CAAGCCAGCG
65 GAGCATGAA--CA--G
* * *
47230140 AGGCATGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGAATGGTAACTTGTAGTACATG
1 A--TA-GTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATG
47230205 CATGAGCATGA
62 CATGAGCATGA
47230216 GCATGAACTT
Statistics
Matches: 132, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
74 2 0.02
75 63 0.48
76 1 0.01
77 1 0.01
80 1 0.01
82 1 0.01
83 62 0.47
84 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (76 bp):
ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTAATGGTAACTTGTATTACATGCATG
AGCATGAACAG
Found at i:47231151 original size:78 final size:78
Alignment explanation
Indices: 47231022--47231182 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
47231012 GTATTCATGT
47231022 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
47231087 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
* *
47231100 AAGCATGCAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTGGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
47231165 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
47231178 AAGCA
1 AAGCA
47231183 ACCAAAGATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (78 bp):
AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
ATCAAGTAAAGCA
Found at i:47231603 original size:84 final size:84
Alignment explanation
Indices: 47231462--47231620 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
47231452 TTCATGCTCA
* * *
47231462 TGCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCCTGGCATCTCTACCATTTGTCTGTCAAC
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
*
47231527 ACTATGCCTCGCTGGCTTG
66 ACCATGCCTCGCTGGCTTG
* * * *
47231546 TGCTCATGCATGTAATACGAGTTACCATTCAAGGTTCTTGGCACCTCTACCAATTGTCTGTCAAG
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
47231611 ACCATGCCTC
66 ACCATGCCTC
47231621 AAGCTTCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (84 bp):
TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
ACCATGCCTCGCTGGCTTG
Found at i:47233534 original size:3 final size:3
Alignment explanation
Indices: 47233526--47233556 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
47233516 TTTGAACCTT
47233526 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47233557 AACAAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47235912 original size:31 final size:31
Alignment explanation
Indices: 47235847--47236483 Score: 402
Period size: 31 Copynumber: 21.2 Consensus size: 31
47235837 TTTGATTGTT
* * * *
47235847 TTATACATTGCCG-AATTAATTCGTATATAA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
47235877 TTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
47235908 TTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * * * *
47235939 AGATA-AGTTGCCG-AACTGATTCGTATATAA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
*
47235969 TTATACATTGCTGAAACTT-ATTTGTATATGG
1 TTATACATTGCTGAAA-TTGATTTGTATATGA
* *
47236000 TTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** *
47236031 AGATA-AGTTGC-CAAATTGATTTGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
47236061 TTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
47236092 TTACACATTGTTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
*
47236124 -TATA-AGTTGCCG-AATT-A-----AT-TCG-
1 TTATACA-TTGCTGAAATTGATTTGTATAT-GA
* *
47236146 -TATA--TTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
47236174 TTATACATT-ATCGAAATTGATTTGTCTATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * *
47236205 AGATA-AGTTGC-CAAATTGATTCGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
47236235 TTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACATTGCTGAAATTGATTTGTATATGA
* ** *
47236265 GTATACATTATTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
* *
47236297 -TATA-AGTTGCTG-AATTAATTCGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * * *
47236326 TTATACATTGCCGAACTTGATTTATATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
47236357 TTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * ** *
47236387 TTATACATTGCTGAACTTTATTCATATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
47236418 TTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
47236448 TTATACATTG-TCGAATTTGATTCGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
*
47236479 ATATA
1 TTATA
47236484 TATATGGTTG
Statistics
Matches: 464, Mismatches: 102, Indels: 81
0.72 0.16 0.13
Matches are distributed among these distances:
20 5 0.01
21 4 0.01
22 5 0.01
23 2 0.00
24 2 0.00
27 3 0.01
28 1 0.00
29 7 0.02
30 185 0.40
31 248 0.53
32 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (31 bp):
TTATACATTGCTGAAATTGATTTGTATATGA
Found at i:47235915 original size:61 final size:61
Alignment explanation
Indices: 47235847--47236483 Score: 379
Period size: 61 Copynumber: 10.6 Consensus size: 61
47235837 TTTGATTGTT
* * * * *
47235847 TTATACATTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
** ** * * * * *
47235908 TTATACATTATCGAAATTGATTTGTATATGAAGATA-AGTTGCCG-AACTGATTCGTATATAA
1 TTATACATTGCCG-AATTGATTTGTATATGATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * *
47235969 TTATACATTGCTGAAACTT-ATTTGTATATGGTTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCCG-AA-TTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * *
47236031 AGATA-AGTTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* ** * * *
47236092 TTACACATTGTTGAAATTGAATTGTATATGGA-TATA-AGTTGCCG-AATTAATTCG--TAT-A
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * * * *
47236150 -T-TGC--TG--AAATTTATTTGTATATGGTTATACATT-ATCGAAATTGATTTGTCTATGA
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * * *
47236205 AGATA-AGTTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* *** * *
47236265 GTATACATTATTGAAATTGAATTGTATATGGA-TATA-AGTTGCTG-AATTAATTCGTATATGA
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * *
47236326 TTATACATTGCCGAACTTGATTTATATATGGTTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* * ** * * *
47236387 TTATACATTGCTGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* * *
47236448 TTATACATTGTCGAATTTGATTCGTATATGAATATA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATA
47236484 TATATGGTTG
Statistics
Matches: 444, Mismatches: 95, Indels: 74
0.72 0.15 0.12
Matches are distributed among these distances:
50 1 0.00
51 20 0.05
52 9 0.02
54 5 0.01
55 1 0.00
56 1 0.00
57 2 0.00
59 5 0.01
60 25 0.06
61 298 0.67
62 75 0.17
63 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (61 bp):
TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
Found at i:47235951 original size:92 final size:92
Alignment explanation
Indices: 47235854--47236479 Score: 704
Period size: 92 Copynumber: 6.9 Consensus size: 92
47235844 GTTTTATACA
*
47235854 TTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
47235919 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
47235946 TTGCCGAACTGATTCGTATATAATTATACATTGCTGAAACTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
47236011 CGAAATTGATTTGCATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * * *
47236038 TTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
47236103 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
47236130 TTGCCGAATTAATTC------G--TAT--ATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
47236185 CGAAATTGATTTGTCTATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * *
47236212 TTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
47236276 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * *
47236303 TTGCTGAATTAATTCGTATATGATTATACATTGCCGAACTTGATTTATATATGGTTATACATT-G
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * **
47236367 CCAAATTAATTCGTATATGATTATACA-
66 CGAAATTGATTTGTATATGAAGATA-AG
* * * * * * * *
47236394 TTGCTGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGATTATACATTG
1 TTGCCGAA-TTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA
* *
47236458 TCGAATTTGATTCGTATATGAA
65 TCGAAATTGATTTGTATATGAA
47236480 TATATATATG
Statistics
Matches: 451, Mismatches: 69, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
82 67 0.15
84 3 0.01
86 1 0.00
88 1 0.00
90 3 0.01
91 127 0.28
92 249 0.55
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (92 bp):
TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:47236211 original size:82 final size:82
Alignment explanation
Indices: 47236068--47236323 Score: 307
Period size: 82 Copynumber: 3.0 Consensus size: 82
47236058 TGATTATACT
* *
47236068 TTGCTGAAATTAATTTGTATATGGTTACACATTGTTGAAATTGAATTGTATATGGATATAAGTTG
1 TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
47236133 CCGAATTAATTCGTATA
66 CCGAATTAATTCGTATA
* * * * * *
47236150 TTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTCTATGAAGATAAGTTG
1 TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
* *
47236215 CCAAATTGATTCGTATATGATTATA
66 CCGAATTAATTC------G--TATA
*
47236240 CTTTGATGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATTGTATATGGATATAAGT
1 --TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGT
*
47236304 TGCTGAATTAATTCGTATA
64 TGCCGAATTAATTCGTATA
47236323 T
1 T
47236324 GATTATACAT
Statistics
Matches: 144, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
81 1 0.01
82 67 0.47
83 4 0.03
85 1 0.01
88 1 0.01
90 4 0.03
91 44 0.31
92 22 0.15
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (82 bp):
TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
CCGAATTAATTCGTATA
Found at i:47236265 original size:174 final size:173
Alignment explanation
Indices: 47235975--47236323 Score: 619
Period size: 174 Copynumber: 2.0 Consensus size: 173
47235965 ATAATTATAC
47235975 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
* * *
47236040 GCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGTTG
66 GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TACACATTATTG
47236105 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
130 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
*
47236149 ATTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTC-TATGAAGATAAGT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTG-CATATGAAGATAAGT
*
47236213 TGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTATACATTATTG
65 TGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTG
*
47236278 AAATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTAT
130 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
47236322 AT
1 AT
47236324 GATTATACAT
Statistics
Matches: 168, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
173 55 0.33
174 112 0.67
175 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (173 bp):
ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTGA
AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
Found at i:47236318 original size:91 final size:92
Alignment explanation
Indices: 47236149--47236483 Score: 360
Period size: 91 Copynumber: 3.7 Consensus size: 92
47236139 TAATTCGTAT
* * * *
47236149 ATTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTG-ATTTGTCTATGAAGATAAGT
1 ATTGC-GAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGT
** *
47236213 TGCCAAATTGATTCGTATATGATTATAC
65 TGCTGAATTAATTCGTATATGATTATAC
* * * * *
47236241 TTTGATGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATT-GTATATGGATATAAGT
1 ATTG-CGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGT
47236304 TGCTGAATTAATTCGTATATGATTATAC
65 TGCTGAATTAATTCGTATATGATTATAC
* * * * *
47236332 ATTGCCGAACTTGATTTATATATGGTTATACATT-GCCAAATT-AATTCGTATATGATTATACA-
1 ATTG-CGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATA-AG
* * *
47236394 TTGCTGAACTTTATTCATATATGGTTATAC
64 TTGCTGAA-TTAATTCGTATATGATTATAC
* * * *
47236424 ATTGCCAAATTGATTTGTATATGATTATACATTGTCGAATTTG-ATTCGTATATGAATATA
1 ATTGCGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATA
47236484 TATATGGTTG
Statistics
Matches: 203, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
90 4 0.02
91 123 0.61
92 76 0.37
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (92 bp):
ATTGCGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGTT
GCTGAATTAATTCGTATATGATTATAC
Found at i:47236442 original size:152 final size:153
Alignment explanation
Indices: 47236150--47236446 Score: 357
Period size: 152 Copynumber: 1.9 Consensus size: 153
47236140 AATTCGTATA
* * * * * *
47236150 TTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTCTATGAAGATAAGTTG
1 TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATAAGTTG
* * ** ***
47236215 CCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTATACATTATTGAA
66 CCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGGTATACATTAGCCAA
47236280 ATTGAATTGTATATGGATATAAG
131 ATTGAATTGTATATGGATATAAG
* * ***
47236303 TTGCTG-AATTAATTCGTATATGATTATACATTGCCGAACTTGATTTATATATGGTTATACA-TT
1 TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATA-AGTT
* * *
47236366 GCCAAATTAATTCGTATATGATTATACATTGCTGAACTTTATTCATATATGGTTATACATT-GCC
65 GCCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGG-TATACATTAGCC
*
47236430 AAATTGATTTGTATATG
129 AAATTGAATTGTATATG
47236447 ATTATACATT
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
152 105 0.88
153 15 0.12
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (153 bp):
TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATAAGTTG
CCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGGTATACATTAGCCAA
ATTGAATTGTATATGGATATAAG
Found at i:47238140 original size:3 final size:3
Alignment explanation
Indices: 47238132--47238186 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
47238122 GTAGACGAGG
*
47238132 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
47238180 ATA ATA A
1 ATA ATA A
47238187 AGCGGGTGGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:47240212 original size:30 final size:30
Alignment explanation
Indices: 47240177--47240309 Score: 164
Period size: 30 Copynumber: 4.5 Consensus size: 30
47240167 TTACAAAATT
* *
47240177 TAAAATTACATTTTAACCCCTT-AACTTTCT
1 TAAAATTACATTTTAA-CCCTTAAATTTTCC
* *
47240207 TAAAATTATATTTTGACCCTTAAATTTTCC
1 TAAAATTACATTTTAACCCTTAAATTTTCC
*
47240237 TAAAATTACATATTAACCCCTT-AATTTTCC
1 TAAAATTACATTTTAA-CCCTTAAATTTTCC
* *
47240267 TAAAATTACCTTTTAA-CCTTAAATTTTCA
1 TAAAATTACATTTTAACCCTTAAATTTTCC
47240296 TAAAATTACATTTT
1 TAAAATTACATTTT
47240310 GTCCCCAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.04
29 25 0.28
30 55 0.62
31 5 0.06
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.44
Consensus pattern (30 bp):
TAAAATTACATTTTAACCCTTAAATTTTCC
Found at i:47240323 original size:59 final size:60
Alignment explanation
Indices: 47240177--47240309 Score: 196
Period size: 60 Copynumber: 2.2 Consensus size: 60
47240167 TTACAAAATT
* * * * *
47240177 TAAAATTACATTTTAACCCCTTAACTTTCTTAAAATTATATTTTGACCCTTAAATTTTCC
1 TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
* *
47240237 TAAAATTACATATTAACCCCTTAATTTTCCTAAAATTACCTTTT-AACCTTAAATTTTCA
1 TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
47240296 TAAAATTACATTTT
1 TAAAATTACATTTT
47240310 GTCCCCAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 26 0.40
60 39 0.60
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.44
Consensus pattern (60 bp):
TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
Found at i:47240803 original size:19 final size:20
Alignment explanation
Indices: 47240781--47240824 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
47240771 CCTAGGGTTT
*
47240781 GAAAAGAGGAAAAGG-AAAA
1 GAAAAGAAGAAAAGGAAAAA
* *
47240800 GAAAGGAAGAAGAGGAAAAA
1 GAAAAGAAGAAAAGGAAAAA
47240820 GAAAA
1 GAAAA
47240825 AAATAAAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAAAAGGAAAAA
Found at i:47243088 original size:75 final size:75
Alignment explanation
Indices: 47243003--47243143 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 75
47242993 ATAATGGATG
* **
47243003 AACTATTTGACCTCTAAAGAAAGGATTGTATGAAACAATAACACCACATCA-TCTGAAACCCTTT
1 AACTATTTGACCTATAAAGAAAACATTGTATGAAACAATAACACCACATCACTC-GAAACCCTTT
47243067 TCTGTGTTACA
65 TCTGTGTTACA
* **
47243078 AACTATTTGACCTATAGAGAAAACATTGTATGAAACAATAATGCCACATCACTCGAAACCCTTTT
1 AACTATTTGACCTATAAAGAAAACATTGTATGAAACAATAACACCACATCACTCGAAACCCTTTT
47243143 C
66 C
47243144 CAATAGTTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 57 0.97
76 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.28
Consensus pattern (75 bp):
AACTATTTGACCTATAAAGAAAACATTGTATGAAACAATAACACCACATCACTCGAAACCCTTTT
CTGTGTTACA
Found at i:47248715 original size:29 final size:29
Alignment explanation
Indices: 47248675--47248754 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
47248665 TTACCTCAAA
*
47248675 TTACATTTTAGTCATTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
47248704 TTACATTTTAGTCACTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
47248733 TTACATTTTAGTCACTTATGTT
1 TTACATTTTAGTCACTTATGTT
47248755 ATCGTTTTGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (29 bp):
TTACATTTTAGTCACTTATGTTTAAAATG
Found at i:47250896 original size:25 final size:25
Alignment explanation
Indices: 47250846--47250902 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
47250836 AGCCAATGTA
*
47250846 GGAAAAAGAAAAAGAAGAAAATAAG
1 GGAAAAAGAAAAAGAAGAAAAAAAG
*
47250871 GGAAAATGAAAAAGAA-AATAAAAAG
1 GGAAAAAGAAAAAGAAGAA-AAAAAG
*
47250896 GTAAAAA
1 GGAAAAA
47250903 AAGGACGACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (25 bp):
GGAAAAAGAAAAAGAAGAAAAAAAG
Found at i:47255269 original size:23 final size:22
Alignment explanation
Indices: 47255240--47255400 Score: 144
Period size: 23 Copynumber: 7.0 Consensus size: 22
47255230 CTATCATCCA
*
47255240 CCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAAT-ATACCCT
* *
47255263 CTAAACACAAACAAGT-TACCCT
1 CCAAACACAACCAA-TATACCCT
47255285 CCAAACACAACCATATATACCCT
1 CCAAACACAACCA-ATATACCCT
* *
47255308 CCGAACACAACCACATTTACCCT
1 CCAAACACAACCA-ATATACCCT
*
47255331 CCAAACACAACCATATATGTAACCT
1 CCAAACACAACCA-ATA--TACCCT
** * * *
47255356 CTGAACACAAGCAAGCATACCGT
1 CCAAACACAACCAA-TATACCCT
47255379 CCAAACACAACCAATATACCCT
1 CCAAACACAACCAATATACCCT
47255401 TCAACATATC
Statistics
Matches: 109, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
22 23 0.21
23 68 0.62
24 2 0.02
25 16 0.15
ACGTcount: A:0.42, C:0.37, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAACACAACCAATATACCCT
Found at i:47255383 original size:48 final size:45
Alignment explanation
Indices: 47255240--47255396 Score: 160
Period size: 48 Copynumber: 3.4 Consensus size: 45
47255230 CTATCATCCA
* * *
47255240 CCAAACACAACCA-ATCATAGCCTCTAAACACAAACAAG-TTACCCT
1 CCAAACACAACCATAT-ATAACCTCTGAACAC-AACAAGCATACCCT
* * *
47255285 CCAAACACAACCATATATACCCTCCGAACACAACCA-CATTTACCCT
1 CCAAACACAACCATATATAACCTCTGAACACAACAAGCA--TACCCT
*
47255331 CCAAACACAACCATATATGTAACCTCTGAACACAAGCAAGCATACCGT
1 CCAAACACAACCATATA--TAACCTCTGAACACAA-CAAGCATACCCT
47255379 CCAAACACAACCA-ATATA
1 CCAAACACAACCATATATA
47255397 CCCTTCAACA
Statistics
Matches: 95, Mismatches: 9, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
44 4 0.04
45 27 0.28
46 25 0.26
47 3 0.03
48 32 0.34
49 2 0.02
50 2 0.02
ACGTcount: A:0.43, C:0.36, G:0.05, T:0.16
Consensus pattern (45 bp):
CCAAACACAACCATATATAACCTCTGAACACAACAAGCATACCCT
Found at i:47259510 original size:18 final size:18
Alignment explanation
Indices: 47259466--47259510 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
47259456 CATTCGTTTC
*
47259466 CAAAACATTATTCATTTA
1 CAAAACGTTATTCATTTA
*
47259484 CAAATCGTTATTCAATTT-
1 CAAAACGTTATTC-ATTTA
47259502 CAAAACGTT
1 CAAAACGTT
47259511 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCATTTA
Found at i:47263443 original size:22 final size:22
Alignment explanation
Indices: 47263419--47263496 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
47263409 CACTAATGAA
47263419 CAGAGAGCATTAAAGTGCTATA-
1 CAGAGAGCA-TAAAGTGCTATAC
*
47263441 CAGAGAGCACAAACGTGCTA-AC
1 CAGAGAGCATAAA-GTGCTATAC
* *
47263463 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCA-TAAAGTGCTA-T-AC
47263488 CAGAGAGCA
1 CAGAGAGCA
47263497 GCAACGTGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 4 0.09
22 30 0.65
23 2 0.04
25 10 0.22
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (22 bp):
CAGAGAGCATAAAGTGCTATAC
Found at i:47263496 original size:25 final size:24
Alignment explanation
Indices: 47263419--47263522 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
47263409 CACTAATGAA
* *
47263419 CAGAGAGCATTAAAGTGCTAT-A-
1 CAGAGAGCACTAACGTGCTATAAT
* *
47263441 CAGAGAGCACAAACGTGC--TAAC
1 CAGAGAGCACTAACGTGCTATAAT
47263463 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCACTAACGTGCTA-TAAT
47263488 CAGAGAGCAGC-AACGTGCTAATAAT
1 CAGAGAGCA-CTAACGTGCT-ATAAT
47263513 CAGAGAGCAC
1 CAGAGAGCAC
47263523 GCTAAAGTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 32 0.46
24 1 0.01
25 33 0.47
26 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTATAAT
Found at i:47263504 original size:47 final size:44
Alignment explanation
Indices: 47263419--47263508 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 44
47263409 CACTAATGAA
*
47263419 CAGAGAGCATTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
1 CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
*
47263463 CAGAGAGCACTAACGTGCTAGTAATCAGAGAGCAGC-AACGTGCTAA
1 CAGAGAGCACTAAAGTGCTA-T-A-CAGAGAGCA-CAAACGTGCTAA
47263509 TAATCAGAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
44 18 0.45
45 1 0.03
46 1 0.03
47 19 0.47
48 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (44 bp):
CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
Found at i:47264410 original size:17 final size:16
Alignment explanation
Indices: 47264384--47264417 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
47264374 CCAAATATTC
47264384 TTTCTTTTCTTCCCTT
1 TTTCTTTTCTTCCCTT
*
47264400 TTTCTTTTTCTTTCCTT
1 TTTC-TTTTCTTCCCTT
47264417 T
1 T
47264418 CTCCCTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCTTTTCTTCCCTT
Found at i:47266252 original size:21 final size:21
Alignment explanation
Indices: 47266198--47266252 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
47266188 GTGGGGATCA
*
47266198 ACACACCCATATGAGCGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
47266219 ACACGCCCGTATGAGGGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
47266240 ACAGGGCCATATG
1 ACACGCCCATATG
47266253 TAGGTGACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (21 bp):
ACACGCCCATATGAGCGAGGC
Found at i:47268077 original size:46 final size:45
Alignment explanation
Indices: 47268007--47268145 Score: 197
Period size: 46 Copynumber: 3.0 Consensus size: 45
47267997 AAAATGCTAT
* *
47268007 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTACAC
47268053 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACGTTACAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
* * * *
47268099 AACTTAGTATGGTTTTCTTTATTGAATTACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
47268145 A
1 A
47268146 CTTTGCCATG
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 83 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.37
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTACAC
Found at i:47269661 original size:22 final size:21
Alignment explanation
Indices: 47269630--47269684 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
47269620 CAATAGGCTA
*
47269630 GTCTCAAGACAATTTGCT-ATAT
1 GTCTCGAGACAATTT-CTCAT-T
47269652 GTCTCGAGACAATTTCTCGATT
1 GTCTCGAGACAATTTCTC-ATT
47269674 GTCTCGAGACA
1 GTCTCGAGACA
47269685 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (21 bp):
GTCTCGAGACAATTTCTCATT
Found at i:47272167 original size:21 final size:21
Alignment explanation
Indices: 47272141--47272200 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
47272131 GTGTGAAAGG
47272141 AGGCACATAGCCGTGTGA-CTA
1 AGGCACAT-GCCGTGTGACCTA
47272162 AGGCACATGCCCGTGTGACCTA
1 AGGCACATG-CCGTGTGACCTA
*
47272184 AGG-ACATGGTCGTGTGA
1 AGGCACAT-GCCGTGTGA
47272201 TCAGGCCATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 1 0.03
21 27 0.77
22 7 0.20
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (21 bp):
AGGCACATGCCGTGTGACCTA
Found at i:47275705 original size:28 final size:29
Alignment explanation
Indices: 47275660--47275714 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
47275650 ATCTTTCATT
* *
47275660 TTAATTTAATTATTTTTTATTTTATAAAC
1 TTAATTTAATTATGTTTTATATTATAAAC
*
47275689 TTAA-TTACTTATGTTTTATATTATAA
1 TTAATTTAATTATGTTTTATATTATAA
47275715 CATATATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (29 bp):
TTAATTTAATTATGTTTTATATTATAAAC
Found at i:47275943 original size:13 final size:13
Alignment explanation
Indices: 47275925--47275959 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
47275915 ATAAAATCGT
47275925 AAATATTTAATAA
1 AAATATTTAATAA
47275938 AAATATTTAATAA
1 AAATATTTAATAA
47275951 AAATATTTA
1 AAATATTTA
47275960 CGAGCTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTTAATAA
Found at i:47282098 original size:43 final size:43
Alignment explanation
Indices: 47282032--47282123 Score: 141
Period size: 43 Copynumber: 2.1 Consensus size: 43
47282022 AGGCATAAGC
* *
47282032 AAAGGGACTTACCGGTCAGGAAAGATAGAGGTGATT-GGAAAGA
1 AAAGCGACTTACCGGTCAGGAAAGATAGACGTGATTAGG-AAGA
*
47282075 AGAGCGACTTACCGGTCAGGAAAGATAGACGTGATTAGGAAGA
1 AAAGCGACTTACCGGTCAGGAAAGATAGACGTGATTAGGAAGA
47282118 AAAGCG
1 AAAGCG
47282124 GTATGTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.39, C:0.12, G:0.34, T:0.15
Consensus pattern (43 bp):
AAAGCGACTTACCGGTCAGGAAAGATAGACGTGATTAGGAAGA
Found at i:47282687 original size:312 final size:312
Alignment explanation
Indices: 47282122--47282746 Score: 1250
Period size: 312 Copynumber: 2.0 Consensus size: 312
47282112 GGAAGAAAAG
47282122 CGGTATGTTTTTCAGCTGAGATAGGCAGAAAAAAATGAGGTCTTGGGCAAGTATACGTTTTTTAA
1 CGGTATGTTTTTCAGCTGAGATAGGCAGAAAAAAATGAGGTCTTGGGCAAGTATACGTTTTTTAA
47282187 CTTGTTTGTTTTAGGCTCTATTATTTCTCCTCCTACCAACAACCTGATAATAATCCCATCCGACA
66 CTTGTTTGTTTTAGGCTCTATTATTTCTCCTCCTACCAACAACCTGATAATAATCCCATCCGACA
47282252 CCCAAATTTCACAAATCGTGTTAATATTATTATTACAAGTATATTTTAAAATTTTATAAATAAGT
131 CCCAAATTTCACAAATCGTGTTAATATTATTATTACAAGTATATTTTAAAATTTTATAAATAAGT
47282317 AAATAAGAAACTTTAACGTCATTTTAGGGTGAGTTTGGATGGACGATGCCTTTACCTGCGGTTAG
196 AAATAAGAAACTTTAACGTCATTTTAGGGTGAGTTTGGATGGACGATGCCTTTACCTGCGGTTAG
47282382 TGTAAAAACAGTCATGGCGGTGAGATTAGATACTGTAATGATATTATAGCGT
261 TGTAAAAACAGTCATGGCGGTGAGATTAGATACTGTAATGATATTATAGCGT
47282434 CGGTATGTTTTTCAGCTGAGATAGGCAGAAAAAAATGAGGTCTTGGGCAAGTATACGTTTTTTAA
1 CGGTATGTTTTTCAGCTGAGATAGGCAGAAAAAAATGAGGTCTTGGGCAAGTATACGTTTTTTAA
47282499 CTTGTTTGTTTTAGGCTCTATTATTTCTCCTCCTACCAACAACCTGATAATAATCCCATCCGACA
66 CTTGTTTGTTTTAGGCTCTATTATTTCTCCTCCTACCAACAACCTGATAATAATCCCATCCGACA
47282564 CCCAAATTTCACAAATCGTGTTAATATTATTATTACAAGTATATTTTAAAATTTTATAAATAAGT
131 CCCAAATTTCACAAATCGTGTTAATATTATTATTACAAGTATATTTTAAAATTTTATAAATAAGT
47282629 AAATAAGAAACTTTAACGTCATTTTAGGGTGAGTTTGGATGGACGATGCCTTTACCTGCGGTTAG
196 AAATAAGAAACTTTAACGTCATTTTAGGGTGAGTTTGGATGGACGATGCCTTTACCTGCGGTTAG
47282694 TGTAAAAACAGTCATGGCGGTGAGATTAGATACTGTAATGATATTATAGCGT
261 TGTAAAAACAGTCATGGCGGTGAGATTAGATACTGTAATGATATTATAGCGT
47282746 C
1 C
47282747 AGACAAAAAG
Statistics
Matches: 313, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
312 313 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (312 bp):
CGGTATGTTTTTCAGCTGAGATAGGCAGAAAAAAATGAGGTCTTGGGCAAGTATACGTTTTTTAA
CTTGTTTGTTTTAGGCTCTATTATTTCTCCTCCTACCAACAACCTGATAATAATCCCATCCGACA
CCCAAATTTCACAAATCGTGTTAATATTATTATTACAAGTATATTTTAAAATTTTATAAATAAGT
AAATAAGAAACTTTAACGTCATTTTAGGGTGAGTTTGGATGGACGATGCCTTTACCTGCGGTTAG
TGTAAAAACAGTCATGGCGGTGAGATTAGATACTGTAATGATATTATAGCGT
Found at i:47287517 original size:16 final size:16
Alignment explanation
Indices: 47287496--47287565 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
47287486 TTTGGTTCGC
* *
47287496 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* *
47287512 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
47287528 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
47287544 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
47287560 TGTAAT
1 TGTAAT
47287566 AGCAAATCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:47287598 original size:45 final size:45
Alignment explanation
Indices: 47287544--47287653 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
47287534 GGAATAGAGG
47287544 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
* * ***
47287589 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
47287633 TG--A---AATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
47287654 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 15 0.26
42 1 0.02
44 18 0.32
45 23 0.40
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (45 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
Found at i:47287820 original size:18 final size:17
Alignment explanation
Indices: 47287799--47287833 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47287789 TTATTATTAA
*
47287799 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47287817 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47287834 TCTTAAGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47288001 original size:28 final size:28
Alignment explanation
Indices: 47287961--47288017 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
47287951 AAACTCTGTT
*
47287961 CGGAAGAGCTGAGGGCCGTGGAAGCAAC
1 CGGAAGAGCTGAGGGCCGTGCAAGCAAC
47287989 CGGAAGAGCTGAGGGCCGTGCAAGCAAC
1 CGGAAGAGCTGAGGGCCGTGCAAGCAAC
47288017 C
1 C
47288018 TATGAAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.40, T:0.07
Consensus pattern (28 bp):
CGGAAGAGCTGAGGGCCGTGCAAGCAAC
Found at i:47305618 original size:2 final size:2
Alignment explanation
Indices: 47305611--47305659 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
47305601 ATGAGTTTGA
47305611 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
47305653 CT CT CT C
1 CT CT CT C
47305660 AGGGATCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:47311995 original size:155 final size:153
Alignment explanation
Indices: 47311712--47312318 Score: 963
Period size: 155 Copynumber: 3.9 Consensus size: 153
47311702 AACATGTTCG
*
47311712 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTAT-TTT-AAAAAA-ATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATT-TCTTTAAAAAAATATATTATTTT
* * * *
47311774 CGTATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTT
65 TGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTTT
47311839 TTAAATAAATTTAAAAAAAACCCT
130 TTAAATAAATTTAAAAAAAACCCT
47311863 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTTCTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTTCTTT-AA-AAAAATATATTATTT
47311928 TTGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTT
64 TTGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTT
47311993 TTTAAATAAATTTAAAAAAAACCCT
129 TTTAAATAAATTTAAAAAAAACCCT
47312018 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTTCTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTTCTTT-AA-AAAAATATATTATTT
47312083 TTGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTT
64 TTGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTT
*
47312148 TTTAAATAAAATTTTTAAAAAAACCCT
129 TTTAAAT-AAA-TTTAAAAAAAACCCT
* * * *
47312175 TATTTCGGCCATTTGTTCGTA-TTTTTTTCTCAGATTTTATTACTTTTAAAAAATATATTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTTC-CGGATTTTATTTCTTTAAAAAAATATATTATTTT
* * * * * *
47312239 TGTATTTTATTATTTTACACTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTT
65 TGCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTTT
47312304 TTAAATAAA-TTAAAA
130 TTAAATAAATTTAAAA
47312319 GTAATAAAAT
Statistics
Matches: 431, Mismatches: 17, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
150 1 0.00
151 44 0.10
152 5 0.01
153 1 0.00
154 8 0.02
155 312 0.72
156 12 0.03
157 48 0.11
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (153 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTTCCGGATTTTATTTCTTTAAAAAAATATATTATTTTT
GCATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTTTT
TAAATAAATTTAAAAAAAACCCT
Found at i:47312865 original size:304 final size:303
Alignment explanation
Indices: 47312316--47312962 Score: 993
Period size: 304 Copynumber: 2.1 Consensus size: 303
47312306 AAATAAATTA
* *
47312316 AAAGTAATAAAATCC-GAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAAATTT
1 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAAGGGTTTTTTT-AAATTT
*
47312380 ATTTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAA
65 ATTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAA
* *
47312445 AATACGAAAATAGTATTTTTTTAAAATAATAAAATCCGGAAAAAAAATACGAACAAAGGGCCGAA
130 AATACAAAAATAATATTTTTTTAAAATAATAAAATCCGG-AAAAAAATACGAACAAAGGGCCGAA
* ** *
47312510 ATAAGGGTTTTTTTTAAATTTATTTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTAC
194 ATAAGGGTTTTTTTTAAATATAAATAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTAC
47312575 TAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTT
259 TAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTT
47312620 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAA-GGTTTTTTT-AATTTA
1 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAAGGGTTTTTTTAAATTTA
* * * *
47312683 TTTAAAAAACACATTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
66 TTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
*
47312748 ATGA-AAAAATAATATATTTTTATTGAAAGA-AATAAAATTCGG-AAAAAATACGAACAAAGGGC
131 AT-ACAAAAAT-A-ATATTTTT-TT-AAA-ATAATAAAATCCGGAAAAAAATACGAACAAAGGGC
* *
47312810 CGAAATAAGGGTTTTTTTTAAATATAAATAAAAAACACACTAAATGAATACATTTCAAACATAAT
190 CGAAATAAGGGTTTTTTTTAAATATAAATAAAAAACAAACTAAATGAATACATTTCAAAAATAAT
*
47312875 GTACTAAAATAATGTAAAATAATAAAATTAGAAAGTAGTATATTTTTTT
255 GTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTT
* * *
47312924 AAAGTAATAAAATCTGG-GGACAAAATACGAACAAATGGC
1 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGC
47312963 CAAAAGTTAG
Statistics
Matches: 316, Mismatches: 20, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
302 73 0.23
303 22 0.07
304 174 0.55
305 32 0.10
306 14 0.04
307 1 0.00
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (303 bp):
AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAAGGGTTTTTTTAAATTTA
TTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
ATACAAAAATAATATTTTTTTAAAATAATAAAATCCGGAAAAAAATACGAACAAAGGGCCGAAAT
AAGGGTTTTTTTTAAATATAAATAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTA
AAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTT
Found at i:47312889 original size:153 final size:152
Alignment explanation
Indices: 47312316--47312963 Score: 932
Period size: 151 Copynumber: 4.3 Consensus size: 152
47312306 AAATAAATTA
*
47312316 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATCCG-GAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
*
47312381 TTTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
*
47312446 A-TACGAAAAT-A-GTATTTTTTT
130 ATTA-GAAAATAATATATTTTTTT
*
47312467 AAAATAATAAAATCCGGAAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
1 AAAGTAATAAAATCCGG-AAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
*
47312532 TTTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
*
47312597 ATTAGAAAATAGTATATTTTTTT
130 ATTAGAAAATAATATATTTTTTT
* *
47312620 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAA-GG-TTTTTTT-AATTT
1 AAAGTAATAAAATCC-G-GAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
* * * *
47312682 ATTTAAAAAACACATTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
64 ATTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAA
* *
47312747 AATGAAAAAATAATATATTTTTATT
129 AATTAGAAAATAATATATTTTT-TT
* * *
47312772 GAAAGAAATAAAATTCGG-AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATATA
1 -AAAGTAATAAAATCCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
** * *
47312836 AATAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
* *
47312901 ATTAGAAAGTAGTATATTTTTTT
130 ATTAGAAAATAATATATTTTTTT
* * * *
47312924 AAAGTAATAAAATCTGGGGACAAAATACGAACAAATGGCC
1 AAAGTAATAAAATC-CGGAAAAAAATACGAACAAAGGGCC
47312964 AAAAGTTAGA
Statistics
Matches: 451, Mismatches: 33, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
150 27 0.06
151 232 0.51
152 23 0.05
153 140 0.31
154 28 0.06
155 1 0.00
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (152 bp):
AAAGTAATAAAATCCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
TTAAAAAACAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAA
TTAGAAAATAATATATTTTTTT
Found at i:47312991 original size:67 final size:65
Alignment explanation
Indices: 47312898--47313034 Score: 193
Period size: 67 Copynumber: 2.1 Consensus size: 65
47312888 GTAAAATAAT
* * * * * *
47312898 AAAATTAGAAAGTAGTATATTTTTTTAAAGTAATAAAATCTGGGGACAAAATACGAACAAATGGC
1 AAAATTAGAAAATAATATATTGTTTTAAAGTAATAAAATC-CGGGAAAAAATACGAACAAAAGGC
47312963 C
65 C
47312964 AAAAGTTAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGC
1 AAAA-TTAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGC
47313029 C
65 C
*
47313030 GAAAT
1 AAAAT
47313035 AAGAGTTTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.02
66 29 0.46
67 33 0.52
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (65 bp):
AAAATTAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCC
Found at i:47313139 original size:220 final size:220
Alignment explanation
Indices: 47312753--47313183 Score: 636
Period size: 220 Copynumber: 2.0 Consensus size: 220
47312743 ATAAAATGAA
* * *
47312753 AAAATAATATATTTTTATTGAAAGAAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAA
1 AAAATAATATATTGTTATTGAAAGAAATAAAATCCGGAAAAAATACGAACAAAAGGCCGAAATAA
*
47312818 GGGTTTTTTTTAAATATAAATAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAA
66 GAGTTTTTTTTAAATATAAATAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAA
* * * * * * *
47312883 ATAATGTAAAATAATAAAATTAGAAAGTAGTATATTTTT-TT-AAAGTAATAAAATCTGGGGACA
131 ATAATGTAAAATAATAAAATGAAAAAATAATATATTTTTATTGAAAGAAATAAAAT-T-CGGAAA
*
47312946 AAATACGAACAAATGGCCAAAAGTTAG
194 AAATACGAACAAAGGGCCAAAAGTTAG
*
47312973 AAAATAATATATTGTT-TT-AAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCCGAAATA
1 AAAATAATATATTGTTATTGAAAGAAATAAAATCC-GGAAAAAATACGAACAAAAGGCCGAAATA
* ** * *
47313036 AGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTA
65 AGAGTTTTTTTTAAATATA-AATAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTA
47313101 AAATAATGTAAAATAATAAAATGAAAAAATAATATATTTTTATTGAAAGAAATAAAATTCGGAAA
129 AAATAATGTAAAATAATAAAATGAAAAAATAATATATTTTTATTGAAAGAAATAAAATTCGGAAA
47313166 AAATACGAACAAAGGGCC
194 AAATACGAACAAAGGGCC
47313184 GAAATAAGGG
Statistics
Matches: 189, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
218 13 0.07
219 47 0.25
220 114 0.60
221 3 0.02
222 12 0.06
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (220 bp):
AAAATAATATATTGTTATTGAAAGAAATAAAATCCGGAAAAAATACGAACAAAAGGCCGAAATAA
GAGTTTTTTTTAAATATAAATAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAA
ATAATGTAAAATAATAAAATGAAAAAATAATATATTTTTATTGAAAGAAATAAAATTCGGAAAAA
ATACGAACAAAGGGCCAAAAGTTAG
Done.