Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 20 of 161
Found at i:6607824 original size:14 final size:13
Alignment explanation
Indices: 6607798--6607848 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
6607788 ATTTATTTGA
6607798 AATATAATAATAT
1 AATATAATAATAT
6607811 AATATAATTAATAT
1 AATATAA-TAATAT
* *
6607825 AAT-TTACAATAT
1 AATATAATAATAT
*
6607837 AATAAAATAATA
1 AATATAATAATA
6607849 ATATACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 8 0.26
13 14 0.45
14 9 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:6608358 original size:14 final size:15
Alignment explanation
Indices: 6608327--6608359 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6608317 GTTGAGATAT
*
6608327 TAGTTTTTAAAAATA
1 TAGTTTATAAAAATA
6608342 TAGTTTATAAAAA-A
1 TAGTTTATAAAAATA
6608356 TAGT
1 TAGT
6608360 CCCTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (15 bp):
TAGTTTATAAAAATA
Found at i:6612891 original size:28 final size:28
Alignment explanation
Indices: 6612868--6613060 Score: 205
Period size: 28 Copynumber: 7.0 Consensus size: 28
6612858 ATTTTATAAA
*
6612868 TTTT-CCCTTATTTTTTAAATTTTACAG
1 TTTTGCCCTTATTTTTTAGATTTTACAG
* * *
6612895 TTTTGCCCTTATTTTTCAAATTTTACAA
1 TTTTGCCCTTATTTTTTAGATTTTACAG
* * *
6612923 TTTT-ACCTCTATTTTCTAGATTTTACAA
1 TTTTGCCCT-TATTTTTTAGATTTTACAG
* * * *
6612951 TTTTGCCCATGTTTTGTAGATTTTAAAG
1 TTTTGCCCTTATTTTTTAGATTTTACAG
*
6612979 TTTTGCCC-TATTTTTTAGATTTTGCAG
1 TTTTGCCCTTATTTTTTAGATTTTACAG
* *
6613006 TTTTG-CCTCTATTTTCTAGATTTTATAG
1 TTTTGCCCT-TATTTTTTAGATTTTACAG
*
6613034 TTTTACCCTTATTTTTTAGATTTTACA
1 TTTTGCCCTTATTTTTTAGATTTTACA
6613061 ATTTCCCCCT
Statistics
Matches: 138, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.01
27 27 0.20
28 104 0.75
29 5 0.04
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.55
Consensus pattern (28 bp):
TTTTGCCCTTATTTTTTAGATTTTACAG
Found at i:6613010 original size:55 final size:55
Alignment explanation
Indices: 6612846--6613060 Score: 226
Period size: 56 Copynumber: 3.9 Consensus size: 55
6612836 GTCGTATGTC
* * * *
6612846 CCCTATTTTCAGATTTTATAAATTTT-CCCTTATTTTTTAAATTTTACAGTTTTG
1 CCCTATTTTTAGATTTTACAAGTTTTACCCTTATTTTTTAGATTTTACAGTTTTG
* * *
6612900 CCCTTATTTTTCAAATTTTACAA-TTTTA-CCTCTATTTTCTAGATTTTACAATTTTG
1 CCC-TATTTTT-AGATTTTACAAGTTTTACCCT-TATTTTTTAGATTTTACAGTTTTG
* * *
6612956 CCCATGTTTTGTAGATTTTA-AAGTTTTGCCC-TATTTTTTAGATTTTGCAGTTTTG
1 CCC-TATTTT-TAGATTTTACAAGTTTTACCCTTATTTTTTAGATTTTACAGTTTTG
*
6613011 CCTCTATTTTCTAGATTTTA-TAGTTTTACCCTTATTTTTTAGATTTTACA
1 CC-CTATTTT-TAGATTTTACAAGTTTTACCCTTATTTTTTAGATTTTACA
6613061 ATTTCCCCCT
Statistics
Matches: 134, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
54 3 0.02
55 61 0.46
56 67 0.50
57 3 0.02
ACGTcount: A:0.22, C:0.15, G:0.08, T:0.54
Consensus pattern (55 bp):
CCCTATTTTTAGATTTTACAAGTTTTACCCTTATTTTTTAGATTTTACAGTTTTG
Found at i:6613015 original size:83 final size:83
Alignment explanation
Indices: 6612848--6613058 Score: 264
Period size: 83 Copynumber: 2.5 Consensus size: 83
6612838 CGTATGTCCC
* *
6612848 CTATTTTC-AGATTTTATAAATTTTCCCTTATTTTTTAAATTTTACAGTTTTGCCCTTATTTTTC
1 CTATTTTCTAGATTTTA-AAATTTTCCCTTATTTTTTAGATTTTAAAGTTTTGCCCTTATTTTTC
6612912 AAATTTTACAATTTTACCT
65 AAATTTTACAATTTTACCT
* * * * *
6612931 CTATTTTCTAGATTTTACAATTTTGCCCATGTTTTGTAGATTTTAAAGTTTTGCCC-TATTTTTT
1 CTATTTTCTAGATTTTAAAATTTT-CCCTTATTTTTTAGATTTTAAAGTTTTGCCCTTATTTTTC
* * * *
6612995 AGATTTTGCAGTTTTGCCT
65 AAATTTTACAATTTTACCT
* *
6613014 CTATTTTCTAGATTTTATAGTTTTACCCTTATTTTTTAGATTTTA
1 CTATTTTCTAGATTTTAAAATTTT-CCCTTATTTTTTAGATTTTA
6613059 CAATTTCCCC
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
83 75 0.69
84 34 0.31
ACGTcount: A:0.22, C:0.14, G:0.08, T:0.55
Consensus pattern (83 bp):
CTATTTTCTAGATTTTAAAATTTTCCCTTATTTTTTAGATTTTAAAGTTTTGCCCTTATTTTTCA
AATTTTACAATTTTACCT
Found at i:6613071 original size:83 final size:82
Alignment explanation
Indices: 6612848--6613082 Score: 249
Period size: 83 Copynumber: 2.8 Consensus size: 82
6612838 CGTATGTCCC
* * * *
6612848 CTATTTTC-AGATTTTATAAATTTTCCCTTATTTTTTAAATTTTACAGTTTTGCCCTTATTTTTC
1 CTATTTTCTAGATTTTAT-AATTTTCCCTTATTTTTTAGATTTTACA-ATTTCCCCCTATTTTTC
6612912 AAATTTTACAATTTTACCT
64 AAATTTTACAATTTTACCT
* * * * ** *
6612931 CTATTTTCTAGATTTTACAATTTTGCCCATGTTTTGTAGATTTTA-AAGTTTTGCCCTATTTTTT
1 CTATTTTCTAGATTTTATAATTTT-CCCTTATTTTTTAGATTTTACAA-TTTCCCCCTATTTTTC
* * * *
6612995 AGATTTTGCAGTTTTGCCT
64 AAATTTTACAATTTTACCT
* * *
6613014 CTATTTTCTAGATTTTATAGTTTTACCCTTATTTTTTAGATTTTACAATTTCCCCCTACTTTACA
1 CTATTTTCTAGATTTTATAATTTT-CCCTTATTTTTTAGATTTTACAATTTCCCCCTATTTTTCA
6613079 AATT
65 AATT
6613083 ACAACTTTGC
Statistics
Matches: 122, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
83 96 0.79
84 26 0.21
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.54
Consensus pattern (82 bp):
CTATTTTCTAGATTTTATAATTTTCCCTTATTTTTTAGATTTTACAATTTCCCCCTATTTTTCAA
ATTTTACAATTTTACCT
Found at i:6613798 original size:138 final size:138
Alignment explanation
Indices: 6613549--6613839 Score: 404
Period size: 138 Copynumber: 2.1 Consensus size: 138
6613539 AAATTTTTTG
* * ** *
6613549 TGCACCCACAACCCAGTGGCAAT-TTTCATCCTTTAACTGCAAATATGTTGTACATCTACAACCC
1 TGCACCCACAACCTAATGGTGATGTTT-ATCCTTTAACTGCAAATATGTTGTACATCCACAACCC
*
6613613 ATCAACAACTTTTACCTGCAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTATCTACGAT
65 ATCAACAACTTTTACCTGCAAATATATTGTGCATCTACAGCCCAGTGGCAGATTTTATCTACGAT
6613678 ATTTTGCTA
130 ATTTTGCTA
* * *
6613687 TGCACCCACAGCCTAATGGTGATGTTTATCCTTTAATTGCAAATATGTTTTACATCCACAACCCA
1 TGCACCCACAACCTAATGGTGATGTTTATCCTTTAACTGCAAATATGTTGTACATCCACAACCCA
** * * * **
6613752 TCGGCAGCTTTTACCTGCAAATATATTGTGCATCTACTGCCTAGTGGCAGATTTTATCTGTGATA
66 TCAACAACTTTTACCTGCAAATATATTGTGCATCTACAGCCCAGTGGCAGATTTTATCTACGATA
*
6613817 TTTTGCTG
131 TTTTGCTA
*
6613825 TGTACCCACAACCTA
1 TGCACCCACAACCTA
6613840 GTGGCAGGTT
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
138 130 0.98
139 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (138 bp):
TGCACCCACAACCTAATGGTGATGTTTATCCTTTAACTGCAAATATGTTGTACATCCACAACCCA
TCAACAACTTTTACCTGCAAATATATTGTGCATCTACAGCCCAGTGGCAGATTTTATCTACGATA
TTTTGCTA
Found at i:6613844 original size:45 final size:45
Alignment explanation
Indices: 6613791--6613898 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
6613781 GCATCTACTG
* *
6613791 CCTAGTGGCAGATTTTATCTGTG-ATATTTTGCTGTGTACCCACAA
1 CCTAGTGGCAGATTTTATCTATGAAT-TTTTACTGTGTACCCACAA
* * * * *
6613836 CCTAGTGGCAGGTTTCATCTATGAATTTTTACTTTGTATCCACAG
1 CCTAGTGGCAGATTTTATCTATGAATTTTTACTGTGTACCCACAA
*
6613881 CCTAGTGGAAGATTTTAT
1 CCTAGTGGCAGATTTTAT
6613899 TTGCAAAACT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 50 0.96
46 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (45 bp):
CCTAGTGGCAGATTTTATCTATGAATTTTTACTGTGTACCCACAA
Found at i:6614963 original size:87 final size:86
Alignment explanation
Indices: 6614818--6614981 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 86
6614808 TACATGCATA
* * * *
6614818 AGGTTGACTTCTTTCTCTTAATGAATTCATATCCTAAAGTTTTGGTGGTATTATTGAGACGGACT
1 AGGTTGACTTCTTACTCTTAATGAATTCATATCCTAAAGTTTGGGTGGTACTATTGAGACGAACT
6614883 TGATGAATTCATCAACATGTG
66 TGATGAATTCATCAACATGTG
* * * *
6614904 AGGTTGAATTTCTTACTCTTAATGAGTTCATATTCTAGAA-TTTGGGTGGTCCTATTGAGACGAA
1 AGGTTG-ACTTCTTACTCTTAATGAATTCATATCCTA-AAGTTTGGGTGGTACTATTGAGACGAA
6614968 CTTGATGAATTCAT
64 CTTGATGAATTCAT
6614982 TGAACTTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
86 6 0.09
87 60 0.88
88 2 0.03
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (86 bp):
AGGTTGACTTCTTACTCTTAATGAATTCATATCCTAAAGTTTGGGTGGTACTATTGAGACGAACT
TGATGAATTCATCAACATGTG
Found at i:6616124 original size:18 final size:20
Alignment explanation
Indices: 6616082--6616129 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
6616072 TTTATGAAGT
*
6616082 TTTTAAAATTATTTTTAATA
1 TTTTAAAATTATTTTTAAGA
6616102 TTTTAAAATTA-TTTT-AGA
1 TTTTAAAATTATTTTTAAGA
*
6616120 TTTTATAATT
1 TTTTAAAATT
6616130 TTACTTAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 4 0.15
20 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTAAAATTATTTTTAAGA
Found at i:6616297 original size:15 final size:15
Alignment explanation
Indices: 6616279--6616314 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
6616269 GTTAATAATA
6616279 AAAATGTATAGTTCT
1 AAAATGTATAGTTCT
6616294 AAAATGTATAGTTCT
1 AAAATGTATAGTTCT
6616309 AAAATG
1 AAAATG
6616315 GTAAGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (15 bp):
AAAATGTATAGTTCT
Found at i:6617105 original size:25 final size:25
Alignment explanation
Indices: 6617077--6617155 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
6617067 CTCGTTTGGT
* * *
6617077 CTTACCGTTACTCAGCTCGCATGAG
1 CTTACCATTACTCAGCTCGAAAGAG
* **
6617102 CTTATCATTTTTCAGCTCGAAAGAG
1 CTTACCATTACTCAGCTCGAAAGAG
*
6617127 CTTACCATTA--CAGCTCGTAAGAG
1 CTTACCATTACTCAGCTCGAAAGAG
*
6617150 CATACC
1 CTTACC
6617156 GATTCAAAGC
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
23 17 0.39
25 27 0.61
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (25 bp):
CTTACCATTACTCAGCTCGAAAGAG
Found at i:6617148 original size:23 final size:25
Alignment explanation
Indices: 6617114--6617179 Score: 82
Period size: 23 Copynumber: 2.7 Consensus size: 25
6617104 TATCATTTTT
* *
6617114 CAGCTCGAAAGAGCTTACC-ATT-A
1 CAGCTCGTAAGAGCATACCGATTCA
6617137 CAGCTCGTAAGAGCATACCGATTCA
1 CAGCTCGTAAGAGCATACCGATTCA
* *
6617162 AAGCTCGTATGAGCATAC
1 CAGCTCGTAAGAGCATAC
6617180 ATGTACAGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
23 17 0.46
24 3 0.08
25 17 0.46
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (25 bp):
CAGCTCGTAAGAGCATACCGATTCA
Found at i:6620064 original size:36 final size:38
Alignment explanation
Indices: 6619991--6620083 Score: 106
Period size: 36 Copynumber: 2.6 Consensus size: 38
6619981 TAGATCTTCC
* * *
6619991 CAAG-CTCCTGAAAGAGATAT-TAGGTATTCTTAGTCT
1 CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
*
6620027 CAA-ACTCCTGAATGAGATATCTA-GTCTTCTCAATCT
1 CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
*
6620063 CAAGA-TCCTGAATAAGATATC
1 CAAGACTCCTGAATGAGATATC
6620084 GAGTTTTCCC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
36 46 0.94
37 3 0.06
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (38 bp):
CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
Found at i:6625598 original size:16 final size:17
Alignment explanation
Indices: 6625577--6625614 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
6625567 TAGATGAAAA
6625577 GGAAAG-AAAGGAAAGG
1 GGAAAGAAAAGGAAAGG
6625593 GGAAAGAAAAGGAAAGG
1 GGAAAGAAAAGGAAAGG
6625610 GGAAA
1 GGAAA
6625615 ACTAGGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (17 bp):
GGAAAGAAAAGGAAAGG
Found at i:6626738 original size:23 final size:23
Alignment explanation
Indices: 6626711--6626796 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 23
6626701 GTTTTGCCGA
*
6626711 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
**
6626734 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
* **
6626755 TCAGGCACCTTGTGTGT--TGCT
1 TCAGGCACCTTATGTGTCGTATT
*
6626776 TCAGGCA-CTTATGTGCCGTAT
1 TCAGGCACCTTATGTGTCGTAT
6626797 ATTGATTAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
19 1 0.02
20 7 0.14
21 23 0.46
22 1 0.02
23 18 0.36
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:6649294 original size:31 final size:32
Alignment explanation
Indices: 6649225--6649294 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 32
6649215 ATTTTAAAAT
6649225 AAAATAACACAAATGTGTTAAAATAATTAATTA
1 AAAATAACACAAATGTGTT-AAATAATTAATTA
*
6649258 AAAATAATACAAATGTGTT-AAT-ATGTAATTA
1 AAAATAACACAAATGTGTTAAATAAT-TAATTA
*
6649289 CAAATA
1 AAAATA
6649295 TTTAATGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 2 0.06
31 14 0.41
33 18 0.53
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (32 bp):
AAAATAACACAAATGTGTTAAATAATTAATTA
Found at i:6661984 original size:18 final size:18
Alignment explanation
Indices: 6661963--6661997 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6661953 CTGGGGTAGG
6661963 TTTGGG-TTTCAGTTTGGT
1 TTTGGGCTTT-AGTTTGGT
6661981 TTTGGGCTTTAGTTTGG
1 TTTGGGCTTTAGTTTGG
6661998 GTACTAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.06, C:0.06, G:0.34, T:0.54
Consensus pattern (18 bp):
TTTGGGCTTTAGTTTGGT
Found at i:6668878 original size:109 final size:109
Alignment explanation
Indices: 6668687--6668886 Score: 382
Period size: 109 Copynumber: 1.8 Consensus size: 109
6668677 TTTCTAATTG
*
6668687 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
6668752 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
66 CGTTCAACCAAATAGCTAAACATCCTTTCAAAAATTATAAAATA
6668796 AGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
6668861 CGTTCAACCAAATAGCTAAACATCCT
66 CGTTCAACCAAATAGCTAAACATCCT
6668887 CTTGAATTTT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 89 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATAGCTAAACATCCTTTCAAAAATTATAAAATA
Found at i:6679226 original size:44 final size:44
Alignment explanation
Indices: 6679163--6679249 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
6679153 GCCAAATTGG
*
6679163 GAAGGTTCTTATGTTGTAAAGAAGGCCTTTTTTTAGAGGAGCTA
1 GAAGGTCCTTATGTTGTAAAGAAGGCCTTTTTTTAGAGGAGCTA
6679207 GAAGGTCCTTATGTTGTAAAGAAGGCCTTTTTTTAGAGGAGCT
1 GAAGGTCCTTATGTTGTAAAGAAGGCCTTTTTTTAGAGGAGCT
6679250 TTGATCTTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (44 bp):
GAAGGTCCTTATGTTGTAAAGAAGGCCTTTTTTTAGAGGAGCTA
Found at i:6680543 original size:25 final size:25
Alignment explanation
Indices: 6680497--6680546 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
6680487 CAGTTAAAAA
* * *
6680497 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
6680522 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
6680547 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:6680687 original size:125 final size:125
Alignment explanation
Indices: 6680465--6680759 Score: 527
Period size: 125 Copynumber: 2.4 Consensus size: 125
6680455 ACACATCTAG
* *
6680465 GAATCTTGTTTCTCCAACATTACAGTTAAAAAGATTAAAGCCACATCGGTGAATCTTGATTAAAG
1 GAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTTGATTAAAG
*
6680530 CTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAACAGATTAAAACCAAATTGGT
66 CTACAACAGCAAATCTTACGCCCCAAGCGATGCAGTGGAACAGATTAAAACCAAATTGGT
* *
6680590 GAATCTTGTTTCTCCGACATCGCAGTTAAAAAGATTAAAGCCACATCGTTGAATCTTGATTAAAG
1 GAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTTGATTAAAG
* *
6680655 TTACAACAGTAAATCTTACGCCCCAAGCGATGCAGTGGAACAGATTAAAACCAAATTGGT
66 CTACAACAGCAAATCTTACGCCCCAAGCGATGCAGTGGAACAGATTAAAACCAAATTGGT
6680715 GAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACA
1 GAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACA
6680760 ATGACGAATC
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 162 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (125 bp):
GAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTTGATTAAAG
CTACAACAGCAAATCTTACGCCCCAAGCGATGCAGTGGAACAGATTAAAACCAAATTGGT
Found at i:6683252 original size:108 final size:108
Alignment explanation
Indices: 6683063--6683261 Score: 371
Period size: 108 Copynumber: 1.8 Consensus size: 108
6683053 TTTCTAATTG
*
6683063 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
6683128 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAAA
66 CGTTCAACCAAATAGCTAAACATCCTTTCAAAAATTATAAAAA
*
6683171 AGGCAATATTTTGCGTTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
6683236 CGTTCAACCAAATAGCTAAACATCCT
66 CGTTCAACCAAATAGCTAAACATCCT
6683262 CTTGAATTTT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 88 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (108 bp):
AGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATAGCTAAACATCCTTTCAAAAATTATAAAAA
Found at i:6697182 original size:18 final size:18
Alignment explanation
Indices: 6697161--6697205 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
6697151 CATTCTTCTC
6697161 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
6697179 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
6697197 CCCTTTCCC
1 CCCTTTCCC
6697206 ATTTCGAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (18 bp):
CCCTTTCCCCTTCTCCTT
Found at i:6698391 original size:14 final size:14
Alignment explanation
Indices: 6698368--6698407 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6698358 ACAGAAATGT
*
6698368 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
6698382 AAATCATTTTACGG
1 AAAACATTTTACAG
6698396 AAAACATTTTAC
1 AAAACATTTTAC
6698408 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:6699478 original size:22 final size:23
Alignment explanation
Indices: 6699453--6699498 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
6699443 TTTACTTTTT
6699453 TATATAAATAAA-AAAATTAACA
1 TATATAAATAAATAAAATTAACA
6699475 TATATAAATAAATAAAATTAACA
1 TATATAAATAAATAAAATTAACA
6699498 T
1 T
6699499 TTATTATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (23 bp):
TATATAAATAAATAAAATTAACA
Found at i:6707129 original size:16 final size:17
Alignment explanation
Indices: 6707108--6707139 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6707098 AAATATGCAA
6707108 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
6707124 TCACATAACTTCATAT
1 TCACATAACTTCATAT
6707140 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:6707359 original size:43 final size:43
Alignment explanation
Indices: 6707298--6707468 Score: 192
Period size: 43 Copynumber: 4.0 Consensus size: 43
6707288 AAGACTCGTA
*
6707298 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
*
6707341 CAATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATAT
* * * * *
6707382 CGATGCCAATGTCCTAGACATGGTCTTACACGTAAACACA-AGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA-T
*
6707425 CGATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATAT
6707468 C
1 C
6707469 GGAAATCCTA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
41 26 0.24
42 16 0.15
43 61 0.56
44 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
Found at i:6707441 original size:84 final size:84
Alignment explanation
Indices: 6707300--6707457 Score: 214
Period size: 84 Copynumber: 1.9 Consensus size: 84
6707290 GACTCGTACA
* * *
6707300 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATCAATGCCACTGTCCCAGAC-GTGG
6707364 TCTTACACGAATCAAATACG
65 TCTTACACGAATCAAATACG
* * *
6707384 ATGCCAATGTCCTAGACATGGTCTTACACGTAAACACA-AGTCGATGCCAAC-GTCCCAGACGTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATA-TCAATGCC-ACTGTCCCAGACGTG
6707447 GTCTTACACGA
64 GTCTTACACGA
6707458 TAACACATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
83 2 0.03
84 61 0.94
85 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATCAATGCCACTGTCCCAGACGTGGT
CTTACACGAATCAAATACG
Found at i:6714277 original size:16 final size:17
Alignment explanation
Indices: 6714256--6714287 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6714246 AAATATGCAA
6714256 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
6714272 TCACATAACTTCATAT
1 TCACATAACTTCATAT
6714288 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:6714507 original size:43 final size:43
Alignment explanation
Indices: 6714446--6714616 Score: 201
Period size: 43 Copynumber: 4.0 Consensus size: 43
6714436 AAGACTCGTA
*
6714446 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
*
6714489 CAATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATAT
* * * *
6714530 CGATGCCAATGTCCCAGACATGGTCTTACACGTAAACACA-AGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA-T
*
6714573 CGATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATAT
6714616 C
1 C
6714617 GGAAATCCTA
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 27 0.25
42 16 0.15
43 62 0.56
44 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
Found at i:6714589 original size:84 final size:84
Alignment explanation
Indices: 6714448--6714605 Score: 223
Period size: 84 Copynumber: 1.9 Consensus size: 84
6714438 GACTCGTACA
* * *
6714448 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATCAATGCCACTGTCCCAGAC-GTGG
6714512 TCTTACACGAATCAAATACG
65 TCTTACACGAATCAAATACG
* *
6714532 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACA-AGTCGATGCCAAC-GTCCCAGACGTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATA-TCAATGCC-ACTGTCCCAGACGTG
6714595 GTCTTACACGA
64 GTCTTACACGA
6714606 TAACACATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
83 2 0.03
84 62 0.94
85 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATCAATGCCACTGTCCCAGACGTGGT
CTTACACGAATCAAATACG
Found at i:6720043 original size:6 final size:6
Alignment explanation
Indices: 6720032--6720056 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6720022 AGACGGAGAA
6720032 AACCTC AACCTC AACCTC AACCTC A
1 AACCTC AACCTC AACCTC AACCTC A
6720057 TTCTCTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
AACCTC
Found at i:6722474 original size:15 final size:15
Alignment explanation
Indices: 6722429--6722536 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
6722419 CCAATATCTC
6722429 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6722444 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
6722459 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6722474 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
6722489 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6722504 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
6722519 GATACCCATATCTTT
1 GATACCCATATCTTT
6722534 GAT
1 GAT
6722537 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:6722543 original size:30 final size:30
Alignment explanation
Indices: 6722419--6722542 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
6722409 TTTTATTATG
*
6722419 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
6722450 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
6722480 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
6722510 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
6722540 CCA
1 CCA
6722543 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:6727168 original size:15 final size:15
Alignment explanation
Indices: 6727123--6727230 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
6727113 CCAATATCTC
6727123 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6727138 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
6727153 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6727168 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
6727183 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
6727198 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
6727213 GATACCCATATCTTT
1 GATACCCATATCTTT
6727228 GAT
1 GAT
6727231 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:6727237 original size:30 final size:30
Alignment explanation
Indices: 6727113--6727236 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
6727103 TTTTATTATG
*
6727113 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
6727144 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
6727174 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
6727204 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
6727234 CCA
1 CCA
6727237 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:6730547 original size:21 final size:21
Alignment explanation
Indices: 6730523--6730610 Score: 88
Period size: 21 Copynumber: 4.2 Consensus size: 21
6730513 CCATAAAGGT
* *
6730523 TAAACTGAAGCTCAAAAGAGC
1 TAAACTGAAACTCATAAGAGC
* * *
6730544 TAAACTGAAACCCAGAAGGGC
1 TAAACTGAAACTCATAAGAGC
* *
6730565 TAAACTAAAACTCATATGAG-
1 TAAACTGAAACTCATAAGAGC
* *
6730585 TTAACTGAAGCTCATAAGAGC
1 TAAACTGAAACTCATAAGAGC
6730606 TAAAC
1 TAAAC
6730611 AAAAAGAAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 16 0.31
21 36 0.69
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.18
Consensus pattern (21 bp):
TAAACTGAAACTCATAAGAGC
Found at i:6730569 original size:42 final size:42
Alignment explanation
Indices: 6730487--6730570 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
6730477 GGGTTAAATG
* * * * * *
6730487 GAAGCTTATAAGAGCTGAACGGAAATCCATAAAGGTTAAACT
1 GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
* *
6730529 GAAGCTCAAAAGAGCTAAACTGAAACCCAGAAGGGCTAAACT
1 GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
6730571 AAAACTCATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
Found at i:6734279 original size:15 final size:16
Alignment explanation
Indices: 6734261--6734298 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
6734251 TAAATATTTA
*
6734261 TTATTGTTAT-ATTAT
1 TTATTATTATGATTAT
6734276 TTATTATTATGATTA-
1 TTATTATTATGATTAT
6734291 TTATTATT
1 TTATTATT
6734299 TCTATATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
TTATTATTATGATTAT
Found at i:6734337 original size:16 final size:16
Alignment explanation
Indices: 6734318--6734361 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
6734308 TTATACGTAT
6734318 ATATATATTTTTTTAA
1 ATATATATTTTTTTAA
** *
6734334 ATATATACATTTTTAT
1 ATATATATTTTTTTAA
*
6734350 ATATGTATTTTT
1 ATATATATTTTT
6734362 AAACTTTTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (16 bp):
ATATATATTTTTTTAA
Found at i:6735999 original size:41 final size:41
Alignment explanation
Indices: 6735942--6736047 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
6735932 AATGAGATAA
* *
6735942 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
6735983 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
6736024 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
6736048 AATTGCCAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:6737218 original size:12 final size:12
Alignment explanation
Indices: 6737201--6737231 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
6737191 TATTCATACG
6737201 ATTTTTATATAT
1 ATTTTTATATAT
6737213 ATTTTTATATAT
1 ATTTTTATATAT
6737225 ATTTTTA
1 ATTTTTA
6737232 AAACCTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATTTTTATATAT
Found at i:6737285 original size:24 final size:24
Alignment explanation
Indices: 6737241--6737286 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6737231 AAAACCTTTA
*
6737241 TATACTTTATATTTTATATATACT
1 TATACTTTATATTTTAAATATACT
*
6737265 TATACTTT-TTTTTGTAAATATA
1 TATACTTTATATTT-TAAATATA
6737287 TACACATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (24 bp):
TATACTTTATATTTTAAATATACT
Found at i:6741463 original size:18 final size:18
Alignment explanation
Indices: 6741428--6741465 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6741418 TTGAGTCATT
*
6741428 AAAAAATGATGAAATGAA
1 AAAAAATGATAAAATGAA
6741446 AAAAAATGA-AAAAGTGAA
1 AAAAAATGATAAAA-TGAA
6741464 AA
1 AA
6741466 GGAAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (18 bp):
AAAAAATGATAAAATGAA
Found at i:6741464 original size:23 final size:23
Alignment explanation
Indices: 6741437--6741489 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
6741427 TAAAAAATGA
6741437 TGAAATGAAAAAAAAT-GAAAAAG
1 TGAAATG-AAAAAAATGGAAAAAG
* *
6741460 TGAAAAGGAAAAAATGGAAAAAG
1 TGAAATGAAAAAAATGGAAAAAG
*
6741483 TAAAATG
1 TGAAATG
6741490 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (23 bp):
TGAAATGAAAAAAATGGAAAAAG
Found at i:6741474 original size:22 final size:22
Alignment explanation
Indices: 6741446--6741487 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
6741436 ATGAAATGAA
6741446 AAAAAAT-GAAAAAGTGAAAAGG
1 AAAAAATGGAAAAAGT-AAAAGG
6741468 AAAAAATGGAAAAAGTAAAA
1 AAAAAATGGAAAAAGTAAAA
6741488 TGGAGAGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (22 bp):
AAAAAATGGAAAAAGTAAAAGG
Found at i:6743554 original size:265 final size:265
Alignment explanation
Indices: 6742749--6744272 Score: 2013
Period size: 265 Copynumber: 5.8 Consensus size: 265
6742739 CTGCATAGAC
* * * * *
6742749 AGTGAAGCAGATCGAAGATGGTGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
6742814 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTC-TCC-CCA-A
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGCATA
* * * * * *
6742876 GCAATAGTGGAGCAAATCAAAGATGGTGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGA
131 G--ATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGA
* * * *
6742941 AGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAAATCTTGCCTCCCT
194 AGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCT
6743006 AAGCAGT
259 AAGCAGT
* *
6743013 AGTGGAGCAGGTCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * ** * *
6743078 ATAATTCTACTTCTCTGGGCAGCAGCAGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCT--GCA
* *
6743143 GTAG-T-G-G-AGCAGGTCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTG
129 -TAGATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTG
* * *
6743204 AAGCCAATAATTCTACTTCCCTAGGCAGTAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCC
193 AAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCC
6743269 TAAGCAGT
258 TAAGCAGT
* * * *
6743277 AGTGGAGCAGATCAAAAATGGCAGATTTTACCTCTCTGTGGTTACAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* ** *
6743342 GTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTTCCTGCATA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGCATA
* * * * * *
6743407 GACAGCGAAGCAAATCGAAGATGGCAGATTTTACCT-CATCGTGGTTACAGTGGAGTACATTAAA
131 GATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAA
* *
6743471 GCCAGTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
195 GCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
6743536 AGCAGT
260 AGCAGT
* * *
6743542 AGTGGGGCAGATCAAAGATGGCGGATTTTACCT-CATCGTAGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCC
* ** * *
6743606 AGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCTGCAT
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGCAT
*
6743671 AGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
130 AGATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
** ** * * *
6743736 GCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCT-
195 GCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
6743800 -GCA-T
260 AGCAGT
*
6743804 AGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
1 AG-T-G-G-AGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
* ** * *
6743869 GCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCTG
62 GCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTG
*
6743934 CATAGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATT
127 CATAGATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATT
** *
6743999 GAAGTTAGTAATTCTACTTCCCTAGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTCTCC
192 GAAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCC
6744064 CTAAGCAGT
257 CTAAGCAGT
* * *
6744073 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGCGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
** *
6744138 GTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGC
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCT--GC
* * * * * *
6744202 AGTAG-T-G-G-AGTAGATCGAAGATGGCAGATTTTACCTTCTTGAT-GTTATAGTGGAGTACAT
128 A-TAGATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTG-TGGTTACAGTGGAGTACAT
6744262 TGAAGCCAGTA
191 TGAAGCCAGTA
6744273 TTCCTATCTC
Statistics
Matches: 1119, Mismatches: 115, Indels: 52
0.87 0.09 0.04
Matches are distributed among these distances:
261 3 0.00
262 6 0.01
263 5 0.00
264 397 0.35
265 445 0.40
266 241 0.22
267 8 0.01
268 9 0.01
269 3 0.00
270 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (265 bp):
AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGCATA
GATAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAG
CCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAA
GCAGT
Found at i:6744230 original size:44 final size:44
Alignment explanation
Indices: 6744017--6744230 Score: 137
Period size: 44 Copynumber: 4.9 Consensus size: 44
6744007 TAATTCTACT
* * ** *
6744017 TCCCTAGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* * * ** * *
6744061 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* * * * * *** *
6744105 TCCTTGTGGTTA-CAGCGGAGTACATTGAAGCCAGTA-AT-TCTATC
1 TCCCT-AGG-CAGCAGTGGAGTAGATTGAAGATGGCAGATCT-TATC
* * **
6744149 TCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* *
6744193 TCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGAT
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGAT
6744231 TTTACCTTCT
Statistics
Matches: 120, Mismatches: 44, Indels: 12
0.68 0.25 0.07
Matches are distributed among these distances:
42 1 0.01
43 19 0.16
44 83 0.69
45 16 0.13
46 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (44 bp):
TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
Found at i:6744283 original size:132 final size:132
Alignment explanation
Indices: 6742716--6744272 Score: 1971
Period size: 132 Copynumber: 11.8 Consensus size: 132
6742706 AACAGATCAG
* * * * * *
6742716 TGAAGATTTCAGATCTTGCCTTCCT--GCATAGACAGTGAAGCAGATCGAAGATGGTGAATTTTA
1 TGAAGATTTCAGATCTTGCCTCCCTAAGC--AG-TAGTGGAGCAGATCAAAGATGGCGGATTTTA
*
6742779 CCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAA
63 CCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAA
6742844 TAGAT
128 TAGAT
* * * * * *
6742849 TGAAGATTTCAGATCTTGTCTCCCCAAGCAATAGTGGAGCAAATCAAAGATGGTGAATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
*
6742914 CCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
66 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
6742979 AT
131 AT
* * * *
6742981 TAAAGATTTCAAATCTTGCCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTGGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* * **
6743046 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCTCTGGGCAGCAGCAGAATAG
66 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
6743111 AT
131 AT
* *
6743113 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTGGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* * *
6743178 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAGGCAGTAGTGGAATAG
66 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
6743243 AT
131 AT
* * * *
6743245 TGAAGATTTCAAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGCAGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* * *
6743310 CTCTGTGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAG
66 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
6743375 AT
131 AT
* * * * * * *
6743377 TGAAGATTTTAGATCTTACCTTCCT--GCA-TAGACAGCGAAGCAAATCGAAGATGGCAGATTTT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG--TG-G-AGCAGATCAAAGATGGCGGATTTT
* * *
6743439 ACCT-CATCGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTAG
62 ACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGG
6743503 AATAGAT
126 AATAGAT
* *
6743510 TGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGGGCAGATCAAAGATGGCGGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* * *
6743575 -CATCGTAGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGAATA
66 CCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
6743639 GAT
130 GAT
** ** * * *
6743642 CAAAGATAACAGATCTCGCCTTCCT--GCA-TAGATAGCGAAGCAGATCAAAGATGACGGATTTT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG-T-G-G-AGCAGATCAAAGATGGCGGATTTT
*
6743704 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGA
62 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
6743769 ATAGAT
127 ATAGAT
** ** * * *
6743775 CAAAGATAACAGATCTCGCCTTCCT--GCA-TAGATAGCGAAGCAGATCAAAGATGACGGATTTT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG-T-G-G-AGCAGATCAAAGATGGCGGATTTT
*
6743837 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAGCAGTGGA
62 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
6743902 ATAGAT
127 ATAGAT
** ** * * *
6743908 CAAAGATAACAGATCTCGCCTTCCT--GCA-TAGATAGCGAAGCAGATCAAAGATGACGGATTTT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG-T-G-G-AGCAGATCAAAGATGGCGGATTTT
** * *
6743970 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGTTAGTAATTCTACTTCCCTAGGCAGCAGTGAA
62 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
6744035 ATAGAT
127 ATAGAT
* *
6744041 TGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* *
6744106 CCTTGTGGTTACAGCGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATA
66 CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATA
6744170 GAT
130 GAT
* ** * * * *
6744173 TGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCT
1 TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
* * *
6744238 TCTTGAT-GTTATAGTGGAGTACATTGAAGCCAGTA
66 CCCTG-TGGTTACAGTGGAGTACATTGAAGCCAGTA
6744273 TTCCTATCTC
Statistics
Matches: 1299, Mismatches: 105, Indels: 41
0.90 0.07 0.03
Matches are distributed among these distances:
129 6 0.00
130 7 0.01
131 3 0.00
132 764 0.59
133 500 0.38
134 4 0.00
135 9 0.01
136 6 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCT
CCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAG
AT
Found at i:6745713 original size:13 final size:13
Alignment explanation
Indices: 6745695--6745721 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6745685 CATTATATCG
6745695 TTATTTATTATTA
1 TTATTTATTATTA
6745708 TTATTTATTATTA
1 TTATTTATTATTA
6745721 T
1 T
6745722 GGTTATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:6745796 original size:27 final size:26
Alignment explanation
Indices: 6745773--6745850 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
6745763 ATAATATATT
* *
6745773 TATATATGCATTTTTTATATATATAG
1 TATATACGCATTTTTTATATATATAA
* *
6745799 CACATACGCATATTTTTATATATATAA
1 TATATACGCAT-TTTTTATATATATAA
*
6745826 TATATAGGCATTTTTT-TAATATATA
1 TATATACGCATTTTTTAT-ATATATA
6745851 CGTTTTTAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.02
26 20 0.47
27 22 0.51
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (26 bp):
TATATACGCATTTTTTATATATATAA
Found at i:6745915 original size:14 final size:14
Alignment explanation
Indices: 6745896--6745929 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
6745886 CATTCATACG
6745896 ATTTTTATATATAT
1 ATTTTTATATATAT
6745910 ATTTTTATATATAT
1 ATTTTTATATATAT
6745924 ATTTTT
1 ATTTTT
6745930 TAAAACCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTTTATATATAT
Found at i:6750061 original size:16 final size:16
Alignment explanation
Indices: 6750040--6750076 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
6750030 AATTGCCTAC
6750040 TCCACTACATTAGCTT
1 TCCACTACATTAGCTT
*
6750056 TCCACTACCTTAGCTT
1 TCCACTACATTAGCTT
6750072 TCCAC
1 TCCAC
6750077 AACTAAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.38, G:0.05, T:0.35
Consensus pattern (16 bp):
TCCACTACATTAGCTT
Found at i:6754654 original size:30 final size:30
Alignment explanation
Indices: 6754611--6754681 Score: 124
Period size: 30 Copynumber: 2.3 Consensus size: 30
6754601 TGTTACATTT
*
6754611 AATTTCAAATATCACAGGTAAATTAAATTAA
1 AATTT-AAGTATCACAGGTAAATTAAATTAA
6754642 AATTTAAGTATCACAGGTAAATTAAATTAA
1 AATTTAAGTATCACAGGTAAATTAAATTAA
6754672 AATTTAAGTA
1 AATTTAAGTA
6754682 ATTCATCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 34 0.87
31 5 0.13
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (30 bp):
AATTTAAGTATCACAGGTAAATTAAATTAA
Found at i:6755136 original size:7 final size:6
Alignment explanation
Indices: 6755110--6755134 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6755100 TAAATAAAAA
6755110 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
6755135 TAAAAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:6755887 original size:91 final size:92
Alignment explanation
Indices: 6755776--6755980 Score: 306
Period size: 92 Copynumber: 2.2 Consensus size: 92
6755766 TGCTTAAAAT
* * * **
6755776 TTAAATTCATTTATTCTAAATGTTTAATAGGAAT-GGAAAATATTTTAATAGAAAACTAATAGTA
1 TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
6755840 A-AGTAGAGTATTTTCCAAAAGAAAGGC
66 ACA-TAGAGTATTTTCCAAAAGAAAGGC
*
6755867 TTAAATTTATTCATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
1 TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
* *
6755932 ACATAGAGTATTTTCTAAAGGAAAGGC
66 ACATAGAGTATTTTCCAAAAGAAAGGC
*
6755959 TTAAATTTATTTGTTTTAAATG
1 TTAAATTTATTTATTTTAAATG
6755981 ACGGCTTGTG
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
91 30 0.29
92 71 0.70
93 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (92 bp):
TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
ACATAGAGTATTTTCCAAAAGAAAGGC
Found at i:6760042 original size:20 final size:20
Alignment explanation
Indices: 6760021--6760118 Score: 81
Period size: 20 Copynumber: 4.9 Consensus size: 20
6760011 GTATGATTGT
*
6760021 ACATACGTGCCCCTGTTTGT
1 ACATACGTGCCCCTGTTTGC
* ** * * *
6760041 ACCTTGGTACCCATGATTGC
1 ACATACGTGCCCCTGTTTGC
6760061 ACATACGTGCCCCTGTTTGC
1 ACATACGTGCCCCTGTTTGC
* * * *
6760081 AC-TTCGGTACACCTGATTGC
1 ACATAC-GTGCCCCTGTTTGC
6760101 ACATACGTGCCCCTGTTT
1 ACATACGTGCCCCTGTTT
6760119 ATACTTTGGT
Statistics
Matches: 55, Mismatches: 21, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
19 2 0.04
20 51 0.93
21 2 0.04
ACGTcount: A:0.17, C:0.32, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATACGTGCCCCTGTTTGC
Found at i:6760057 original size:40 final size:41
Alignment explanation
Indices: 6760013--6760131 Score: 172
Period size: 40 Copynumber: 3.0 Consensus size: 41
6760003 AAATTATTGT
*
6760013 ATGATTGTACATACGTGCCCCTGTTTGTACCTTGGTAC-CC
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACACC
*
6760053 ATGATTGCACATACGTGCCCCTGTTTGCA-CTTCGGTACACC
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTT-GGTACACC
* *
6760094 -TGATTGCACATACGTGCCCCTGTTTATACTTTGGTACA
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACA
6760132 TTGAATGTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.04
40 64 0.90
41 4 0.06
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (41 bp):
ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACACC
Found at i:6762947 original size:57 final size:57
Alignment explanation
Indices: 6762809--6762947 Score: 188
Period size: 57 Copynumber: 2.4 Consensus size: 57
6762799 AGGAGAAGAA
* *
6762809 AAGCCTTTATGGTGAACCTATTAAAGGACAGCCTTTGTGGAAAAACTCTAGAAAGGT
1 AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
* * * * *
6762866 AAGCCTATATGGTGAACATGTTAAACGACAGCCTTTGCGGTAAAACTCTGGAAAGGT
1 AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
* * *
6762923 GAGCCTTTGTGGTGAACCTCTTAAA
1 AAGCCTTTATGGTGAACCTATTAAA
6762948 TGATGCTTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (57 bp):
AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
Found at i:6763070 original size:28 final size:29
Alignment explanation
Indices: 6763009--6763071 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
6762999 AATGAAAAGG
*
6763009 ATGCCTTTGTGGCAATCTCTGGATAAATA
1 ATGCCTTTGAGGCAATCTCTGGATAAATA
**
6763038 A-GCCTTTGAGGCTCTCTCT-GA-AAATAA
1 ATGCCTTTGAGGCAATCTCTGGATAAAT-A
6763065 ATGCCTT
1 ATGCCTT
6763072 CGTGGCGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.14
27 4 0.14
28 20 0.69
29 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (29 bp):
ATGCCTTTGAGGCAATCTCTGGATAAATA
Found at i:6765214 original size:26 final size:27
Alignment explanation
Indices: 6765139--6765216 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
6765129 ACATGTAAGA
* * *
6765139 AAATGGAAGCCTTTATGGAAATCCATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
6765166 AAATGGAAGCCTTTGTGGCAATCTATT
1 AAATGGAAGCCTTTGTGGCAATCTATG
6765193 AAATGGAAGCC-TTGTGGCAATCTA
1 AAATGGAAGCCTTTGTGGCAATCTA
6765217 AGGAAAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 13 0.28
27 34 0.72
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:6765236 original size:54 final size:54
Alignment explanation
Indices: 6765178--6765347 Score: 183
Period size: 54 Copynumber: 3.2 Consensus size: 54
6765168 ATGGAAGCCT
*
6765178 TTGTGGCAATCTATTAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
* * * *
6765232 TTGTGGCAAAT-GATGAAA-GAAATGCCTTCATGGCGCA-C-ACA--AAAGAACAAA-CC
1 TTGTGGC-AATCTATGAAATGGAA-GCCTT-GTGGC-AATCTA-AGGAAAGAA-AAATCC
*
6765285 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCGATCTAAGGAAAGAAAAATCC
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
6765339 TTGTGGCAA
1 TTGTGGCAA
6765348 ATGATGAAAG
Statistics
Matches: 94, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
51 1 0.01
52 9 0.10
53 33 0.35
54 41 0.44
55 9 0.10
56 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
Found at i:6765290 original size:53 final size:53
Alignment explanation
Indices: 6765220--6765400 Score: 194
Period size: 53 Copynumber: 3.4 Consensus size: 53
6765210 CAATCTAAGG
* *
6765220 AAAGAAAAATCCTTGTGGCAAATGATGAAAGAAATGCCTTCATGGCGCACACA
1 AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
*
6765273 AAAGAACAAA-CCTTGTGGC-AATCTATGAAATGGAA-GCCTT-GTGGCG-ATCTA-A
1 AAAGAA-AAATCCTTGTGGCAAAT-GATGAAA-GGAATGCCTTCGTGGCGCA-C-ACA
* *
6765325 GGAAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGTCTTCGTGGAGCACACA
1 --AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
* *
6765380 AAAGAACAACCCTTGTGGCAA
1 AAAGAAAAATCCTTGTGGCAA
6765401 CCATTTGAAG
Statistics
Matches: 107, Mismatches: 8, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
51 1 0.01
52 10 0.09
53 53 0.50
54 32 0.30
55 10 0.09
56 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
Found at i:6765304 original size:107 final size:107
Alignment explanation
Indices: 6765178--6765400 Score: 383
Period size: 107 Copynumber: 2.1 Consensus size: 107
6765168 ATGGAAGCCT
*
6765178 TTGTGGCAATCTATTAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
*
6765243 GATGAAAGAAATGCCTTCATGGCGCACACAAAAGAACAAACC
66 GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
*
6765285 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCGATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
* * * *
6765350 GATGAAAGGAATGTCTTCGTGGAGCACACAAAAGAACAACCC
66 GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
6765392 TTGTGGCAA
1 TTGTGGCAA
6765401 CCATTTGAAG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 109 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (107 bp):
TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
Found at i:6765512 original size:27 final size:27
Alignment explanation
Indices: 6765458--6765512 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
6765448 GTATTCTTGA
* * **
6765458 CGAACTCTGAAGGGATAGTATGTGTGG
1 CGAACACTAAAGGGATAGTATGCATGG
6765485 CGAACACTAAAGGGATAGTATGCATGG
1 CGAACACTAAAGGGATAGTATGCATGG
6765512 C
1 C
6765513 AAACTTTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.22
Consensus pattern (27 bp):
CGAACACTAAAGGGATAGTATGCATGG
Found at i:6767890 original size:22 final size:19
Alignment explanation
Indices: 6767872--6768462 Score: 113
Period size: 18 Copynumber: 29.6 Consensus size: 19
6767862 ACTAAAAATT
6767872 TATTTTAAAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
*
6767891 GTATTTTAAAAGTATTTGAAAAA
1 -TATTTTAAAA--A-TTAAAAAA
6767914 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6767932 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6767954 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6767972 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6767994 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768012 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768034 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768052 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768074 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768092 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768114 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768132 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768154 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768172 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768194 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768212 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768234 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768252 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768274 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768292 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768314 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768332 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768354 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768372 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768394 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* * *
6768412 TA-ATAAGAAAGTATTTTAAAAA
1 TATTTTA-AAA--A-TTAAAAAA
6768434 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
*
6768452 T-TTTAAAAAAT
1 TATTTTAAAAAT
6768463 AAATATATTT
Statistics
Matches: 408, Mismatches: 81, Indels: 166
0.62 0.12 0.25
Matches are distributed among these distances:
17 16 0.04
18 130 0.32
19 53 0.13
20 10 0.02
21 55 0.13
22 124 0.30
23 20 0.05
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (19 bp):
TATTTTAAAAATTAAAAAA
Found at i:6767903 original size:11 final size:11
Alignment explanation
Indices: 6767887--6767923 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
6767877 TAAAAATTAA
6767887 AAAAGTATTTT
1 AAAAGTATTTT
*
6767898 AAAAGTATTTG
1 AAAAGTATTTT
*
6767909 AAAAATATTTT
1 AAAAGTATTTT
6767920 AAAA
1 AAAA
6767924 TTAAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:6767943 original size:40 final size:40
Alignment explanation
Indices: 6767872--6768452 Score: 1101
Period size: 40 Copynumber: 14.5 Consensus size: 40
6767862 ACTAAAAATT
* * *
6767872 TATTTTAAAAATTAAAAAAGTATTTTA-AAAGTATTTGAAAAA
1 TATTTT-AAAATTAAAAAA-TA-ATAAGAAAGTATTTTAAAAA
6767914 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6767954 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6767994 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768034 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768074 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768114 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768154 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768194 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768234 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768274 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768314 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768354 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768394 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
6768434 TATTTTAAAATTAAAAAAT
1 TATTTTAAAATTAAAAAAT
6768453 TTTAAAAAAT
Statistics
Matches: 535, Mismatches: 3, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
39 2 0.00
40 515 0.96
41 12 0.02
42 6 0.01
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAATAATAAGAAAGTATTTTAAAAA
Found at i:6768460 original size:17 final size:17
Alignment explanation
Indices: 6768427--6768459 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6768417 AGAAAGTATT
6768427 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
6768444 TTAAAAA-ATTTTAAAA
1 TTAAAAATATTTTAAAA
6768460 AATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:6768465 original size:17 final size:17
Alignment explanation
Indices: 6768428--6768472 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
6768418 GAAAGTATTT
*
6768428 TAAAAATATTTTAAAAT
1 TAAAAATATTTTAAAAA
6768445 TAAAAA-ATTTTAAAAAA
1 TAAAAATATTTT-AAAAA
*
6768462 TAAATATATTT
1 TAAAAATATTT
6768473 ATTATATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.21
17 15 0.62
18 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAATATTTTAAAAA
Found at i:6777181 original size:96 final size:97
Alignment explanation
Indices: 6777063--6777238 Score: 223
Period size: 97 Copynumber: 1.8 Consensus size: 97
6777053 GTCAATTAAG
* * * *
6777063 TTAATTATAATTTTTTTCAAAATTGGATT-GGGTTTCGTATTTATTGTTTTTTAAG-AAAAAATC
1 TTAATTATAATTTTTTTCAAAATTAGATTAGGGTTTAGTATTTA-GGGTTTTTAAGTAAAAAATC
*
6777126 AATTAAATTAAGGTTTAGGGTTACTTGAGTAAT
65 AAATAAATTAAGGTTTAGGGTTACTTGAGTAAT
* * * *
6777159 TTAATTA-AATTTTTTTAGAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGTAAAAACTT
1 TTAATTATAATTTTTTT-CAAAATTAGATTAGGGTTTAGTATTTAGGGTTTTTAAGTAAAAAATC
*
6777223 AAATAAATTAGGGTTT
65 AAATAAATTAAGGTTT
6777239 GGAGTTTAAG
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
95 9 0.13
96 26 0.39
97 32 0.48
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (97 bp):
TTAATTATAATTTTTTTCAAAATTAGATTAGGGTTTAGTATTTAGGGTTTTTAAGTAAAAAATCA
AATAAATTAAGGTTTAGGGTTACTTGAGTAAT
Found at i:6777502 original size:126 final size:126
Alignment explanation
Indices: 6777277--6777693 Score: 674
Period size: 126 Copynumber: 3.3 Consensus size: 126
6777267 TTGTTAATTT
6777277 AAAGAAGCTCCCACGTGGACG-GACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
1 AAAGAAGCTCCCACGTGGACGCG-CTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
*
6777341 CGTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
65 CGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * *
6777403 AAAGAAGCTCTCACATGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAGTAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * *
6777468 GTTTTTGAGCAAGTAGTGTCAAAAACGCTTTAAGCAGGATGCTTTATCAGTAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * * * *
6777529 AAAGAAGCTCCCACGTGGATGCACTTTTGCTATAGTAGCTCTTGAAAAAATAATTTTGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
*
6777594 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCTGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
*
6777655 AAAGAAGCTCCCACGTGAACGCGCTTTTGCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
6777694 ACATGTTTGG
Statistics
Matches: 264, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 263 1.00
127 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:6780111 original size:21 final size:21
Alignment explanation
Indices: 6780087--6780127 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6780077 CCAGCTTTCG
* *
6780087 GCGGGGGTTGTGGTTGCTCCA
1 GCGGGGATTGTGGTTCCTCCA
*
6780108 GCGGGGATTTTGGTTCCTCC
1 GCGGGGATTGTGGTTCCTCC
6780128 GGTAAGGGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.22, G:0.41, T:0.32
Consensus pattern (21 bp):
GCGGGGATTGTGGTTCCTCCA
Found at i:6782284 original size:22 final size:21
Alignment explanation
Indices: 6782259--6782308 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
6782249 TCTTTTAAAT
* *
6782259 AGAAATTTGAGAGGAATTTGAG
1 AGAAATTAGAGA-GAAATTGAG
6782281 AGAATATTAGAGAGAAATTGAG
1 AGAA-ATTAGAGAGAAATTGAG
6782303 AGAAAT
1 AGAAAT
6782309 GATTTAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 16 0.64
23 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (21 bp):
AGAAATTAGAGAGAAATTGAG
Found at i:6782303 original size:10 final size:10
Alignment explanation
Indices: 6782259--6782308 Score: 55
Period size: 10 Copynumber: 4.6 Consensus size: 10
6782249 TCTTTTAAAT
6782259 AGAAATTTGAG
1 AGAAA-TTGAG
*
6782270 AGGAATTTGAG
1 A-GAAATTGAG
6782281 AGAATATTAGAG
1 AGAA-ATT-GAG
6782293 AGAAATTGAG
1 AGAAATTGAG
6782303 AGAAAT
1 AGAAAT
6782309 GATTTAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
10 12 0.35
11 12 0.35
12 10 0.29
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (10 bp):
AGAAATTGAG
Found at i:6787460 original size:35 final size:35
Alignment explanation
Indices: 6787399--6787708 Score: 248
Period size: 35 Copynumber: 8.8 Consensus size: 35
6787389 CTTCTTGATA
* ** *
6787399 TTAATTGAATGAAGTATCAATTTTGTGGCGGGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * **
6787434 TTAATTGAAAGAACTATCGGTGTTGTGGTGGTACA
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * *
6787469 TTAAATTAAAAGAAGTATCGGTGTTGTTGCAGGATG
1 TT-AATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * ** *
6787505 TTAAATGAATGAAGTATCAATGTTGTGGCGAGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * *
6787540 CTCATTGGAAGAAGTATCGGTGTTGTGGTGGGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * *
6787575 TTACA-TGAATGAAGTATCGATGTTGTAGCGGGATG
1 TTA-ATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
***
6787610 TTAATTGAAAGAAGTATCGGTGTTGTGGCGACCTG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * **
6787645 TTAATTGAAAGAGAAGTTTTGGTGCTGTGGCTAGATG
1 TTAATTG-AA-AGAAGTATCGGTGTTGTGGCGGGATG
* * *
6787682 TTATTTGAAA-ATG-ATCGGCGTTGTGGC
1 TTAATTGAAAGAAGTATCGGTGTTGTGGC
6787709 AAGATTTTTG
Statistics
Matches: 211, Mismatches: 59, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
33 10 0.05
34 3 0.01
35 140 0.66
36 32 0.15
37 26 0.12
ACGTcount: A:0.28, C:0.08, G:0.31, T:0.34
Consensus pattern (35 bp):
TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
Found at i:6793526 original size:21 final size:21
Alignment explanation
Indices: 6793500--6793549 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
6793490 CATTGTTTCT
* *
6793500 AATCTCATTGCTACAGTATCC
1 AATCTCACTGCTACAGTAACC
*
6793521 AATCTCACTGCTACAGTAACT
1 AATCTCACTGCTACAGTAACC
6793542 AATCTCAC
1 AATCTCAC
6793550 CACCACCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:6794857 original size:27 final size:27
Alignment explanation
Indices: 6794827--6794886 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
6794817 TGCAAGTTGT
* * *
6794827 GTTCGCCAGTTGGTTTGGCGAGCTGGG
1 GTTCACCAATTGGTTTGGCGAACTGGG
*
6794854 GTTCACCAATTGGTTTGGTGAACTGGG
1 GTTCACCAATTGGTTTGGCGAACTGGG
6794881 GTTCAC
1 GTTCAC
6794887 TAGTCAAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.13, C:0.18, G:0.37, T:0.32
Consensus pattern (27 bp):
GTTCACCAATTGGTTTGGCGAACTGGG
Found at i:6796708 original size:18 final size:18
Alignment explanation
Indices: 6796685--6796721 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6796675 ACTCATGTTT
* *
6796685 TATGTTGTTATGCGAACC
1 TATGTTGTCATGCAAACC
6796703 TATGTTGTCATGCAAACC
1 TATGTTGTCATGCAAACC
6796721 T
1 T
6796722 TAATAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (18 bp):
TATGTTGTCATGCAAACC
Found at i:6797191 original size:24 final size:24
Alignment explanation
Indices: 6797164--6797222 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
6797154 ATCAGTTGAA
*
6797164 CAATATGAAGCACCTCCTGAA-GAT
1 CAATATGAAGCACCACCT-AATGAT
* *
6797188 CAATATCAAACACCACCTAATGAT
1 CAATATGAAGCACCACCTAATGAT
6797212 CAATATGAAGC
1 CAATATGAAGC
6797223 TCTATCTGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.42, C:0.25, G:0.12, T:0.20
Consensus pattern (24 bp):
CAATATGAAGCACCACCTAATGAT
Found at i:6801704 original size:8 final size:8
Alignment explanation
Indices: 6801681--6801721 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
6801671 AATAAATAAG
6801681 TATTATAT
1 TATTATAT
6801689 TAATTATAT
1 T-ATTATAT
*
6801698 TATTATAA
1 TATTATAT
6801706 TATTATAT
1 TATTATAT
6801714 TATTATAT
1 TATTATAT
6801722 ATATAACACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTATAT
Found at i:6801806 original size:4 final size:4
Alignment explanation
Indices: 6801792--6801825 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
6801782 GCAGAGAAGG
6801792 AAGA AAGGA AAGA AAGA AAGA AAGA AA-A AAGA AA
1 AAGA AA-GA AAGA AAGA AAGA AAGA AAGA AAGA AA
6801826 AAGGGAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:6803074 original size:17 final size:17
Alignment explanation
Indices: 6803025--6803075 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
6803015 ATGTGGCATG
*
6803025 TACCTAAGTAATGTACA
1 TACCTAAGTAATGTATA
6803042 TACCTAAGTAATGTATA
1 TACCTAAGTAATGTATA
*
6803059 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
6803076 GGGATTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:6807494 original size:29 final size:28
Alignment explanation
Indices: 6807461--6807553 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 28
6807451 CTCACATTTA
*
6807461 GTGGATATATACCTGTAGACTCATACTTG
1 GTGGA-ATATACCTGCAGACTCATACTTG
* * *
6807490 GTGGACACATACCTACAGACTCATGCTTG
1 GTGGA-ATATACCTGCAGACTCATACTTG
* * *
6807519 GGGGAATGTCCCTGCAGACTCATACTTG
1 GTGGAATATACCTGCAGACTCATACTTG
*
6807547 GAGGAAT
1 GTGGAAT
6807554 GTCCCTATGG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 24 0.46
29 28 0.54
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (28 bp):
GTGGAATATACCTGCAGACTCATACTTG
Found at i:6807566 original size:28 final size:28
Alignment explanation
Indices: 6807477--6807560 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
6807467 ATATACCTGT
* ** *
6807477 AGACTCATACTTGGTGGACACATACCTAC
1 AGACTCATACTTGGAGGA-ATGTCCCTAC
* * *
6807506 AGACTCATGCTTGGGGGAATGTCCCTGC
1 AGACTCATACTTGGAGGAATGTCCCTAC
6807534 AGACTCATACTTGGAGGAATGTCCCTA
1 AGACTCATACTTGGAGGAATGTCCCTA
6807561 TGGACTGTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 30 0.65
29 16 0.35
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (28 bp):
AGACTCATACTTGGAGGAATGTCCCTAC
Found at i:6813257 original size:7 final size:7
Alignment explanation
Indices: 6813239--6813268 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
6813229 AAAATTACCC
6813239 AATTCA-
1 AATTCAT
6813245 AATTCAT
1 AATTCAT
6813252 AATTCAT
1 AATTCAT
6813259 AATTCAT
1 AATTCAT
6813266 AAT
1 AAT
6813269 AATTCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (7 bp):
AATTCAT
Found at i:6813519 original size:24 final size:22
Alignment explanation
Indices: 6813492--6813543 Score: 52
Period size: 24 Copynumber: 2.2 Consensus size: 22
6813482 CCTTTCATCA
6813492 CATTTTCACCTATAAAATTCTTTT
1 CATTTTC-CC-ATAAAATTCTTTT
*
6813516 CATTAAATCCCATAAAATTCTTTT
1 CATT--TTCCCATAAAATTCTTTT
6813540 -ATTT
1 CATTT
6813544 GAAAAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
23 3 0.12
24 17 0.71
25 2 0.08
26 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (22 bp):
CATTTTCCCATAAAATTCTTTT
Found at i:6816535 original size:12 final size:14
Alignment explanation
Indices: 6816498--6816535 Score: 53
Period size: 12 Copynumber: 2.8 Consensus size: 14
6816488 TATATGTATG
6816498 TATAATAATATATAA
1 TATAATAATA-ATAA
6816513 TATAATAATAA-AA
1 TATAATAATAATAA
6816526 -ATAATAATAA
1 TATAATAATAA
6816536 CAAAATTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TATAATAATAATAA
Found at i:6816793 original size:19 final size:21
Alignment explanation
Indices: 6816755--6816793 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
6816745 CCTTTTTTAA
*
6816755 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
6816776 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
6816794 AAGTAAGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:6817005 original size:21 final size:21
Alignment explanation
Indices: 6816979--6817075 Score: 144
Period size: 21 Copynumber: 4.7 Consensus size: 21
6816969 AATCATATCT
*
6816979 TCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATATCATA
6817000 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
6817021 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
* * *
6817040 TATAAGGTTGCATATATCATG
1 TCTAAGATTGCATATATCATA
6817061 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
6817076 CACATATAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.25
21 51 0.75
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:6817014 original size:19 final size:19
Alignment explanation
Indices: 6816992--6817095 Score: 118
Period size: 19 Copynumber: 5.3 Consensus size: 19
6816982 AAGATTGTAT
6816992 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
6817011 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
* *
6817032 ATATCATATATAAGGTTGC
1 ATATCATATCTAAGATTGC
*
6817051 ATATATCATGTCTAAGATTGC
1 --ATATCATATCTAAGATTGC
* * *
6817072 ATATCACATATAAGATTGT
1 ATATCATATCTAAGATTGC
6817091 ATATC
1 ATATC
6817096 CTCGAAAATC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
19 37 0.51
21 35 0.49
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:6817036 original size:40 final size:40
Alignment explanation
Indices: 6816992--6817094 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
6816982 AAGATTGTAT
*
6816992 ATATCATATCTAAGATTGCATATATCATATCTAAGATTGC
1 ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
* *
6817032 ATATCATATATAAGGTTGCATATATCATGTCTAAGATTGC
1 ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
* *
6817072 ATATCACATATAAGATTGTATAT
1 ATATCATATATAAGATTGCATAT
6817095 CCTCGAAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (40 bp):
ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
Found at i:6817499 original size:44 final size:44
Alignment explanation
Indices: 6817432--6817520 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
6817422 GAGACAGGAT
*
6817432 TTGTTTATTTAGTCTGCCTCACTGCAACGTC-AGGAGGATAAGAC
1 TTGTTTACTTAGTCTGCCTCACTGCAACGTCAAGGA-GATAAGAC
*
6817476 TTGTTTACTTAGTCTG-CTCCACTGCAACTTCAAGGAGATAAGAC
1 TTGTTTACTTAGTCTGCCT-CACTGCAACGTCAAGGAGATAAGAC
6817520 T
1 T
6817521 AAACGCGATC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.05
44 35 0.85
45 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
TTGTTTACTTAGTCTGCCTCACTGCAACGTCAAGGAGATAAGAC
Found at i:6817590 original size:44 final size:43
Alignment explanation
Indices: 6817538--6817864 Score: 159
Period size: 44 Copynumber: 7.5 Consensus size: 43
6817528 ATCTGCTCTT
*
6817538 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCTGCTCCAC
1 TGCAACTTCAGAGAGATAAGAT-CAAGGTTTTAATCTGCTCCAC
* * * * * * *
6817582 TGCAACTTCAGGGAGACAGGATTATCGGCTCTAATCTGCTCCAC
1 TGCAACTTCAGAGAGATAAGATCA-AGGTTTTAATCTGCTCCAC
* * * *
6817626 TGCAACTTCAGGGAGATAAGATTTGCCA--TCTTCAATCTAC-CTCAC
1 TGCAACTTCAGAGAGATAAGA--T-CAAGGT-TTTAATCTGCTC-CAC
* ** * * *
6817671 TGTAACTTCAG-GAGGATAAGA-CTTGCTTGCTGAGTCTGCTCCAC
1 TGCAACTTCAGAGA-GATAAGATCAAGGTT--TTAATCTGCTCCAC
* * * * *** **
6817715 TGCAACTTTAGGGAGATAAGA-CTA-GATGCGATCTGCT-CTT
1 TGCAACTTCAGAGAGATAAGATCAAGGTTTTAATCTGCTCCAC
*
6817755 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCAC
1 TGCAACTTCAGAGAGATAAGAT-CAAGGTTTTAATCTGCTCCAC
* * * * * *
6817799 TGTAACTTCA-AGGAGATAGGATTATCGGCTTTAATCTGCTCCAT
1 TGCAACTTCAGA-GAGATAAGATCA-AGGTTTTAATCTGCTCCAC
*
6817843 TGCAACTTCCGAGAGATAAGAT
1 TGCAACTTCAGAGAGATAAGAT
6817865 TTGCCATCAT
Statistics
Matches: 209, Mismatches: 54, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
40 20 0.10
41 7 0.03
42 3 0.01
43 13 0.06
44 134 0.64
45 31 0.15
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TGCAACTTCAGAGAGATAAGATCAAGGTTTTAATCTGCTCCAC
Found at i:6817732 original size:217 final size:217
Alignment explanation
Indices: 6817448--6817912 Score: 723
Period size: 217 Copynumber: 2.1 Consensus size: 217
6817438 ATTTAGTCTG
* * *
6817448 CCTCACTGCAACGTCAGGAGGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAAGGAG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
* *
6817513 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCTGCT
66 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
* *
6817578 CCACTGCAACTTCAGGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGGGAGAT
131 CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
*
6817643 AAGATTTGCCATCTTCAATCTA
196 AAGATTTGCCATCATCAATCTA
* * * *
6817665 CCTCACTGTAACTTCAGGAGGATAAGACTTGCTTGCTGAGTCTGCTCCACTGCAACTTTAGGGAG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
* *
6817730 ATAAGACTAGATGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
66 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
* * * * *
6817795 CCACTGTAACTTCAAGGAGATAGGATTATCGGCTTTAATCTGCTCCATTGCAACTTCCGAGAGAT
131 CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
*
6817860 AAGATTTGCCATCATCAATCTG
196 AAGATTTGCCATCATCAATCTA
* * *
6817882 CCCCACTACAACTTCAGGAGGATAAAACTTG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTG
6817913 TTGGCTTAAA
Statistics
Matches: 224, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
217 224 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (217 bp):
CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
AAGATTTGCCATCATCAATCTA
Found at i:6818079 original size:132 final size:132
Alignment explanation
Indices: 6817909--6818417 Score: 874
Period size: 132 Copynumber: 3.9 Consensus size: 132
6817899 GAGGATAAAA
* * * * *
6817909 CTTGTTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
*
6817974 CTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
6818039 GG
131 GG
*
6818041 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
*
6818106 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
6818171 GG
131 GG
6818173 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * * *
6818238 CACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGAGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
6818303 GG
131 GG
* * * *
6818305 CTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTT
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6818370 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6818418 ACTACTGCTT
Statistics
Matches: 356, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 356 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
GG
Found at i:6818437 original size:47 final size:47
Alignment explanation
Indices: 6818371--6818460 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
6818361 GATCTGCTTC
*
6818371 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCT
*
6818418 ACTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTC
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTC
6818461 TGCTGCAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6818483 original size:179 final size:179
Alignment explanation
Indices: 6818239--6818588 Score: 614
Period size: 179 Copynumber: 2.0 Consensus size: 179
6818229 GATCTGCTCC
* * *
6818239 ACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGAGAGACAAG
1 ACTAATGCTTAGGAAGATAAGATCTACAATCTTTAACCTACTCCGCTGCAGCTCAGAGAGACAAG
6818304 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6818369 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* *
6818418 ACTACTGCTTAGGAAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCA-AGGAGACA
1 ACTAATGCTTAGGAAGATAAGATCTACAATCTTT-AACCTACTCCGCTGCAGCTCAGA-GAGACA
*
6818481 AGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTG
64 AGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
6818546 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCT
129 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCT
6818589 TCACCGCTGC
Statistics
Matches: 163, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
178 4 0.02
179 159 0.98
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (179 bp):
ACTAATGCTTAGGAAGATAAGATCTACAATCTTTAACCTACTCCGCTGCAGCTCAGAGAGACAAG
GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6818570 original size:44 final size:44
Alignment explanation
Indices: 6818520--6818968 Score: 161
Period size: 44 Copynumber: 10.2 Consensus size: 44
6818510 TATCTTTGAA
*
6818520 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
* * * * **
6818564 AGATAAGATCTACAATCTTCAA-C--CTTCACCGCTGCCTTTCAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTG-C-TT-AGGG
* ** * ** * * * **
6818608 AGACAAGGCTTGGCGGCTTAAATCTACTTCCCACTA-T-CTTTGAA
1 AGATAAGATTTGCCATCTTTAATCTGCTT--CACTACTGCTTAGGG
*
6818652 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
* * * * **
6818696 AGATAAGATCTACAATCTTCAA-C--CTTCACCGCTGCCTTTCAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTG-C-TT-AGGG
* ** * ** * * * **
6818740 AGACAAGGCTTGGCGGCTTAAATCTACTTCCCACTA-T-CTTTGAA
1 AGATAAGATTTGCCATCTTTAATCTGCTT--CACTACTGCTTAGGG
* * *
6818784 AGATAAGATTTGCCATCTCTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
* * * * * * **
6818828 AGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
* * * *** * *
6818872 AGACAAGGCTTAG-TGGCTTCAATCTGCTTCCCACTA-T-CTT-GGA
1 AGATAA-GATTTGCCATCTTTAATCTGCTT--CACTACTGCTTAGGG
* *
6818915 ATGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
1 A-GATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
6818960 AGATAAGAT
1 AGATAAGAT
6818969 CTACAATCTT
Statistics
Matches: 277, Mismatches: 100, Indels: 56
0.64 0.23 0.13
Matches are distributed among these distances:
41 18 0.06
42 17 0.06
43 16 0.06
44 192 0.69
45 13 0.05
46 7 0.03
47 6 0.02
48 2 0.01
49 6 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGCCATCTTTAATCTGCTTCACTACTGCTTAGGG
Found at i:6818574 original size:132 final size:132
Alignment explanation
Indices: 6818418--6819520 Score: 1643
Period size: 132 Copynumber: 8.4 Consensus size: 132
6818408 CTACTCCGCT
* * * *** *
6818418 ACTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
*
6818483 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6818548 TC
131 TC
* * *
6818550 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* *
6818615 GCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6818680 TC
131 TC
* * *
6818682 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * *
6818747 GCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6818812 CC
131 TC
* * * * *
6818814 ACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * * * *
6818879 GCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6818944 CC
131 TC
*
6818946 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * *
6819011 GCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTG-T
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6819075 TC
131 TC
* * * *
6819077 TACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGCTTTTCAGGGAGACAA
1 -ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAA
* * *
6819142 GGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGC
6819207 -TC
130 TTC
* * * *
6819209 TACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTTAGGGAGTCAA
1 -ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAA
* *
6819274 GGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGC
*
6819339 TCC
130 TTC
** *
6819342 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * *
6819407 ACTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6819472 TC
131 TC
* *
6819474 ACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6819521 ACTACTGCTT
Statistics
Matches: 895, Mismatches: 73, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
131 2 0.00
132 892 1.00
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
TC
Found at i:6818631 original size:575 final size:575
Alignment explanation
Indices: 6817909--6818992 Score: 1735
Period size: 575 Copynumber: 1.9 Consensus size: 575
6817899 GAGGATAAAA
* * *
6817909 CTTGTTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
1 CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTACTC
* *
6817974 CTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCTGCTCAGGGAGACAA
* * * *
6818039 GGCTTGGTGGCTTAAATCTGCTTCCCACTATC-TTGAAAAGATAAGATTTGTCGTCTTTGATCTG
131 GGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTTTGATCTG
*
6818103 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTACTCAGGGAG
195 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCT-CTCAGGGAG
* * * *
6818167 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATC-TTGAAAAGATAAGATTTGCCGTCTTTGA
259 ACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTCTGA
* ** *
6818231 TCTGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGA
323 TCTGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGA
*
6818296 GAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTT
388 GAGACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTT
* *
6818361 GATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGC
453 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGC
6818426 TTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
518 TTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
* * * * *
6818484 CTTGGTGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGCTT
1 CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTACTC
* *
6818549 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCT-TTCAGGGAGACA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTG-CTGCTCAGGGAGACA
6818613 AGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTG
130 AGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTG
* * *
6818678 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGAGA
195 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCTCTCAGGGAGA
6818743 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATC
260 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATC
* * ** * *
6818808 TGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGGA
325 TGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGAGA
* * * *
6818873 GACAAGGCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAA
390 GACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAA
6818938 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
455 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6818993 GCTGTTCAGG
Statistics
Matches: 464, Mismatches: 41, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
575 454 0.98
576 10 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (575 bp):
CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTACTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCTGCTCAGGGAGACAA
GGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGC
TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCTCTCAGGGAGAC
AAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATCT
GCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGAGAG
ACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTA
GGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
Found at i:6818709 original size:443 final size:443
Alignment explanation
Indices: 6817976--6818863 Score: 1442
Period size: 443 Copynumber: 2.0 Consensus size: 443
6817966 ATCTACTCCT
* * *
6817976 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
1 CTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCAAGGAGACAAGG
* * *
6818041 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCTC
*
6818106 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
131 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCTACTCAGGGAGACAA
* * *
6818171 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
196 GGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGC
* * *
6818236 TCCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTG-CTGCTCAGAGAGA
261 TCCACTAATGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCT-CTCAGAGAGA
* *
6818300 CAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
325 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGATC
* * *
6818365 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTA
390 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTA
* *
6818419 CTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
1 CTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCAAGGAGACAAGG
6818484 CTTGGTGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTTTGATCTGCT
66 CTTGGTGGCTTAAATCTACTTCCCACTATC-TTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
* * *
6818548 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCT-TTCAGGGAGAC
130 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTG-CTACTCAGGGAGAC
6818612 AAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTTTGATC
194 AAGGCTTGGCGGCTTAAATCTACTTCCCACTATC-TTGAAAAGATAAGATTTGCCATCTTTGATC
* * * * *
6818676 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGA
258 TGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCTCTCAGAGA
*
6818741 GACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGA
323 GACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGA
*
6818806 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTA
388 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTA
6818862 CT
1 CT
6818864 TTTTAGGGAG
Statistics
Matches: 411, Mismatches: 30, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
443 401 0.98
444 10 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (443 bp):
CTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCAAGGAGACAAGG
CTTGGTGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCTACTCAGGGAGACAA
GGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGC
TCCACTAATGCTTAGGGAGATAAGATCTACAATCTTCAACCTACACCGCTGCCTCTCAGAGAGAC
AAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGATCT
GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTA
Found at i:6819361 original size:44 final size:44
Alignment explanation
Indices: 6819180--6821221 Score: 175
Period size: 44 Copynumber: 46.2 Consensus size: 44
6819170 TATCTTGGAA
* *
6819180 AGATAAGATTTGCCGTCTTTGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* **** * * * * * **
6819224 AGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
** * * * * *
6819268 AG-TCAAGGCTTGGCGGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGAT-AAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
*
6819312 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * * *
6819356 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
6819400 AGACAAGACTTGGTGGCTTAAATCTGCTTCTCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-TC-CACTACTGCTTAGG-G
* * * *
6819444 AGATAAGATTTGCCATCTTTGATCTGCTTCACAACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** * * *
6819488 AGATAAGA-TCGACAATCTTCAACCTACTCCGCTACTACTGCTTAGGG
1 AGATAAGATTTG-CCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * * ** * * * * *
6819535 AGATAAAATCTACAAT-TTTCAACCTACTCCGCTACTGCTCATGG
1 AGATAAGATTTGCCGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * ** ** * * * **
6819579 TGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTG-CT-CCACTACTGCTTAG-GG
*
6819623 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * *
6819667 AGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
6819711 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAG-GG
* * ** * *
6819755 AGATAAGATTTACCCTCTTTGCTCTGCTCTACTACTGCTTAAGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * * * *
6819799 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
6819843 AGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
6819887 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
6819931 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * * ** * * * * *
6819978 AGATAAAATCTACAAT-TTTCAACCTACTCCGCTACTGCTCATGG
1 AGATAAGATTTGCCGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * ** ** * * * **
6820022 TGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTG-CT-CCACTACTGCTTAG-GG
** *
6820066 AGATAAGATTTTTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *** * * *
6820110 AGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * *
6820154 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
6820198 AGATAAGATTTGCGGTCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
6820242 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
6820286 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAATA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
6820330 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * ** * * *
6820374 AGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
6820418 AGACAAGGCTTGGTGGCTTAAATCTGCTTCTCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-TC-CACTACTGCTTAG-GG
* * *
6820462 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTAATGCTTATGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * ** * * ** * *
6820506 AGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
6820550 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGGG
* * ** *
6820594 AGATAAGATTTGACATCTTCGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * *
6820638 AGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** ** * * *
6820682 ATACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
6820726 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
6820770 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * ** * * ** * * * *
6820817 AGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGG
1 AGATAAGATTTGCCGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
6820861 AGACAAGGCTTGGTGGCTTAAATCTACTTCTCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-TC-CACTACTGCTTAGG-G
* *
6820905 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGAG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
6820949 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
** ** ** * *
6820993 AGACCAGGCTTGGTGGC-TTATATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTA-ATCTGC-T-CCACTACTGCTTAGG-G
* *
6821037 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGAG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
6821081 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
** ** ** * *
6821125 AGACCAGGCTTGGTGGC-TTATATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTA-ATCTGC-T-CCACTACTGCTTAGG-G
* * *
6821169 AGATAAGATTTGCCGTCTTTGATCTGCTTCACTACTGTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
*
6821213 ACATAAGAT
1 AGATAAGAT
6821222 CTACAATCTT
Statistics
Matches: 1303, Mismatches: 590, Indels: 210
0.62 0.28 0.10
Matches are distributed among these distances:
42 74 0.06
43 52 0.04
44 950 0.73
45 61 0.05
46 60 0.05
47 106 0.08
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
Found at i:6819537 original size:47 final size:47
Alignment explanation
Indices: 6819477--6819570 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
6819467 CTGCTTCACA
*
6819477 ACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCGCTACT
1 ACTGCTTAGGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACT
* *
6819524 ACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACT
1 ACTGCTTAGGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACT
6819571 GCTCATGGTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (47 bp):
ACTGCTTAGGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACT
Found at i:6819644 original size:179 final size:179
Alignment explanation
Indices: 6819342--6819697 Score: 579
Period size: 179 Copynumber: 2.0 Consensus size: 179
6819332 GATCTGCTCC
* *
6819342 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAGAGACAAG
* *
6819407 ACTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6819472 TCACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCGCT
131 CCACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCGCT
* *
6819521 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATG-GTGACAA
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCA-GAGAGACAA
* * *
6819585 GGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGC
* * *
6819650 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCG
130 TCCACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCG
6819698 TTGCTGCTCA
Statistics
Matches: 163, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
179 162 0.99
180 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (179 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCGCT
Found at i:6819665 original size:443 final size:443
Alignment explanation
Indices: 6819076--6820406 Score: 2239
Period size: 443 Copynumber: 3.0 Consensus size: 443
6819066 TCGATCTGTT
* * * * * * * ** * *
6819076 CTACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGCTTTTCAGGGAGACA
1 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
* * *
6819141 AGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTG
66 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
* * * * ** * *
6819206 CTCTACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTTAGGGAGT
131 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCAGGGAGA
* *
6819271 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
196 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
6819336 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGA
261 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGA
*
6819401 GACAAGACTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
326 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
* *
6819466 TCTGCTTCACAACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCCG
391 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
6819519 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
1 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
6819584 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
66 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
*
6819649 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGA
131 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCAGGGAGA
* * * *
6819714 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTC
196 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
* * *
6819779 TGCTCTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGA
261 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGA
6819844 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
326 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
6819909 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
391 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
6819962 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
1 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
**
6820027 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCTG
66 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
* *
6820092 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGA
131 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCAGGGAGA
*
6820157 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATC
196 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
* *
6820222 TGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA
261 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGA
* * *
6820287 GACAAGGCTTGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGA
326 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
* *
6820352 TCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
391 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
6820405 CT
1 CT
6820407 GTTACTCATG
Statistics
Matches: 834, Mismatches: 54, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
443 834 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (443 bp):
CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACA
AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCAGGGAGA
CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGA
GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGA
TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
Found at i:6819705 original size:132 final size:131
Alignment explanation
Indices: 6819521--6819963 Score: 706
Period size: 132 Copynumber: 3.4 Consensus size: 131
6819511 CTACTCCGCT
* * * *
6819521 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCA-GGAGACAAG
* *
6819586 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
6819651 CC
130 CC
* *
6819653 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCA-GGAGACAAG
* * *
6819718 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTCTGCT
65 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6819783 CT
130 CC
* *
6819785 ACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAG-GAGACAAG
* *
6819850 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6819915 TC
130 CC
6819917 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6819964 ACTACTGCTT
Statistics
Matches: 286, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 285 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (131 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAGACAAGG
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCTC
C
Found at i:6819808 original size:707 final size:702
Alignment explanation
Indices: 6817968--6821846 Score: 3920
Period size: 707 Copynumber: 5.5 Consensus size: 702
6817958 CGTCTTCGAT
* * * * * * * * *
6817968 CTACTCCTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC-CGCTGCTGCTCAGG
1 CTACTCCGCTGCTGCTCAGGGAGACAAGATCTACAATCTTAAACCTACTCTCTC-ACT-ATCAAG
* *
6818032 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTC-GTCTT
64 GAGACAAGACTTGGTGGCTTAAATCTGCTT-CCACTATCTTGGAAAGATAAGATTTG-CAGTCTT
* *
6818096 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTC
127 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTC
*
6818161 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTC
192 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
* * *
6818226 TTTGATCTGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGC
257 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGC
* * * *
6818291 TCAGAGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCA
322 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCG
*
6818356 TCTTTGATCTGCT-TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTAC
387 TCTTTGATCTGCTCT-ACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCG-T--
* * * * * * *** * * * * * **
6818420 TACTGCTTAGGAAGATAAGATCTACAAT--TTTCAACCTACTCTGCTGCAGC--TCAAGG--AGA
448 TGCTTCTCAGGGAGACAAG-GCT-TGGTGGCTTAAATCTGCT-T-C-CCA-CTATCTTGGAAAGA
* ** **** ** * * ** * *** **
6818479 CAAGGCTTGGTGGCTTAAATCTACTTCCCACTA-T-CTTTGAAAGATAAGATTTGCCATCTTTGA
507 TAAGATTTGCCATCTTTGATCTGCTT--CACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAA
* * * * * * * * * * * * **
6818542 TCTGCTTCACTACTGCTTAGGGAGAT-AA-GATCT-ACAATCTTCAA-C--CTTCACCGCTGCCT
570 CCTACTCCGCTGCTTCTCAGGGAG-TCAAGGCT-TGGC-AGCTTAAATCTACTTC-CCACTATC-
* * ** * * ** * * ** *
6818601 TTCAGG-GAGACAAGGCTTGGCGGCTTAAATCTACTTCCCACTA-T-CTTTGAAAGATAAGATTT
630 TT--GGAAAGATAAGATTTGCCGTCTTTGATCTGC-T-CCACTACTGCTTAGGGAGATAAGATCT
* * ** *
6818663 GCCATCTTTGAT
691 ACAATCTTCAAC
* * * * * * * * * *
6818675 CTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCAC-CGCTGC-CTTTCAG
1 CTACTCCGCTGCTGCTCAGGGAGACAAGATCTACAATCTTAAACC-T-ACTCTCT-CACTATCAA
* * * *
6818738 GGAGACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCA-TCT
63 GGAGACAAGACTTGGTGGCTTAAATCTGCTT-CCACTATCTTGGAAAGATAAGATTTG-CAGTCT
* * * * **
6818802 CTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTT
126 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCT
* * * *
6818867 TAGGGAGACAAGGCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGT
191 CAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGT
*
6818932 CTTTAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTG
256 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTG
* * *
6818997 TTCAGGGAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCC
321 CTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCC
* * * *
6819062 GTCTTCGATCTGTTCTACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGC
386 GTCTTTGATCTGCTCTACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGTTGC
* *
6819127 TTTTCAGGGAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTG
451 TTCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG
* *
6819192 CCGTCTTTGATCTGC-TCTACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGC
516 CCATCTTTGATCTGCTTC-ACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTACTCCGC
* * *
6819256 TGCTTTTTAGGGAGTCAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGAT
580 TGCTTCTCAGGGAGTCAAGGCTTGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGAT
6819321 TTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
645 TTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
* *** * * **
6819379 CTACTCCGCTGCTGCTCAGAGAGACAAGA-CT-TGGTGGCTTAAATCTGCT-TCTCACTATCTTG
1 CTACTCCGCTGCTGCTCAGGGAGACAAGATCTACAAT--CTTAAACCTACTCTCTCACTATCAAG
* * **** ** * * * *
6819441 GAAAGATAAGATTTGCCATCTTTGATCTGCTTCACAACT-GCTTAGG-GAGATAAGA-TCGACAA
64 G--AGACAAGACTTGGTGGCTTAAATCTGCTTC-C-ACTATCTT-GGAAAGATAAGATTTG-CAG
** * * * *
6819503 TCTTCAACCTACTCCGCTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCT
123 TCTTTGATCTGCT-C-C-ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * * *
6819568 ACTGCTCATGGTGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATT
185 ACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT
*
6819633 TGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCG
250 TGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
*
6819698 TTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGA
315 CTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGA
* * * * *
6819763 TTTACCCTCTTTGCTCTGCTCTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTC
380 TTTGCCGTCTTTGATCTGCTCTACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTC
* * * *
6819828 CGCTGCTCCTCAGAGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
445 CGTTGCTTCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
*
6819893 GATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTAC
510 GATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTAC
* * * ** * ** * * * *
6819958 TCCGCTACTACTGCTTAGGGAGATAAAATC-T-ACAATTTTCAACCTAC-TCCGCTACTGCTCAT
575 TCCGCTGCT--T-CTCAGGGAG-TCAAGGCTTGGC-AGCTTAAATCTACTTCC-C-ACT-ATCTT
* * ** ** * ** * ** * *
6820020 GG--TGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GAAAAGATAAGATTTTTC
632 GGAAAGATAAGATTTGCCGTCTTTGATCTG-CT-CCACTACTGCTTAG-GGAGATAAGA-TCTAC
* ** *
6820080 -GTCTTTGAT
693 AATCTTCAAC
* * * * * * * ** *
6820089 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGG
1 CTACTCCGCTGCTGCTCAGGGAGACAAGATCTACAATCTTAAACCTACTCTCTCACT-ATCAAGG
* *
6820154 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTG
65 AGACAAGACTTGGTGGCTTAAATCTGCTT-CCACTATCTTGGAAAGATAAGATTTGCAGTCTTTG
* *
6820219 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAG
129 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAG
*
6820284 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTT
194 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTT
* * *
6820349 TGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTC
259 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTC
* *
6820414 ATGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTC
324 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTC
* * * * * * * *
6820479 TTTGATCTGCTCCACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGC
389 TTTGATCTGCTCTACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGTTGCTTC
* *
6820544 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACA
454 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCA
* * * * *
6820609 TCTTCGATCTGCTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCT
519 TCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTACTCCGCTGCT
* ** *
6820674 GCTCAGGGA-TACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG
584 TCTCAGGGAGT-CAAGGCTTGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTG
* *
6820738 CCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
648 CCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
* * * *
6820793 CTACTCCGCTGCTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGC--T
1 CTACTCCGCTG---CTGCTCAGGGAGACAAGATCTACAATCTTAAACCTACTCT-CT-CA-CTAT
* * *
6820856 CAAGGAGACAAGGCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGT
60 CAAGGAGACAAGACTTGGTGGCTTAAATCTGCTTC-CACTATCTTGGAAAGATAAGATTTGCAGT
* *
6820921 CTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTG
124 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTG
* *
6820986 CTCAGGGAGACCAGGCTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCC
189 CTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCC
*
6821051 GTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGC
254 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGC
* * *
6821116 TGCTCAGGGAGACCAGGCTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG
319 TGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTG
* * * *
6821181 CCGTCTTTGATCTGCT-TCACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTACAT
384 CCGTCTTTGATCTGCTCT-ACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGT
* * * * *
6821245 TGCTTTTCAGGGAGACAAGGCTTGGCGACTTAAATCTACTTCCCACTATCTCGGAAAGATAAGAT
448 TGCTTCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * *
6821310 TTACCGTCTTTGATCTGCTACACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCC
513 TTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTACTCC
* *
6821375 GCTGCTTTTCAGGGAGTCAAGGCTAGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAG
578 GCTGCTTCTCAGGGAGTCAAGGCTTGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAG
* *
6821440 ATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAAC
643 ATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
*
6821500 CTACTCTGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
1 CTACTCCGCTGCTGCTCAGGGAGACAAGA-----T--C-T--A---------CA--ATCTT--AA
** * ** * * * *
6821565 AGATAAGATTACTCCGTTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACAA
43 ACCT---ACT-CT-C-TCACT-ATCAAGGAGACAAGACTTGGTGGCTTAAATCTGCTT-CCACTA
* * * * * *
6821630 TTTTGAAAAGATAAGATTTACCGTCTTTGCTCTGCTCCACTACTGCTTAGGGAGATAAGATCGAC
100 TCTTGGAAAGATAAGATTTGCAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAC
* * *
6821695 AATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCAC
165 AATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAC
* * * * *
6821760 TATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTTTCACAACTGCTTAGGTAGATAAGATCT
230 TATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
6821825 ACAATCTTCAACCTACTCCGCT
295 ACAATCTTCAACCTACTCCGCT
6821847 ACTACTGCTT
Statistics
Matches: 2654, Mismatches: 409, Indels: 192
0.82 0.13 0.06
Matches are distributed among these distances:
700 1 0.00
701 4 0.00
702 37 0.01
703 29 0.01
704 263 0.10
705 15 0.01
706 8 0.00
707 1849 0.70
708 10 0.00
709 16 0.01
710 127 0.05
711 22 0.01
712 17 0.01
714 1 0.00
723 2 0.00
725 4 0.00
727 3 0.00
730 3 0.00
731 3 0.00
732 1 0.00
733 238 0.09
734 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (702 bp):
CTACTCCGCTGCTGCTCAGGGAGACAAGATCTACAATCTTAAACCTACTCTCTCACTATCAAGGA
GACAAGACTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTTGCAGTCTTTGAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGGG
AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAG
GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTT
TGATCTGCTCTACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGTTGCTTCTC
AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATC
TTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTACTCCGCTGCTTC
TCAGGGAGTCAAGGCTTGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCG
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
Found at i:6819982 original size:47 final size:47
Alignment explanation
Indices: 6819917--6820013 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
6819907 GATCTGCTTC
*
6819917 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
*
6819964 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
6820011 ACT
1 ACT
6820014 GCTCATGGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
Found at i:6820036 original size:179 final size:179
Alignment explanation
Indices: 6819783--6820138 Score: 579
Period size: 179 Copynumber: 2.0 Consensus size: 179
6819773 TTGCTCTGCT
* *
6819783 CTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGACA
1 CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCAGAGAGACA
*
6819848 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTG
*
6819913 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
131 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
* * * *
6819962 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATG-GTGAC
1 CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCA-GAGAGAC
* * ** *
6820026 AAGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCT
65 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCT
6820091 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC
130 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC
6820139 TGTTGCTGCT
Statistics
Matches: 163, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
179 162 0.99
180 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (179 bp):
CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCAGAGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
Found at i:6820148 original size:132 final size:132
Alignment explanation
Indices: 6819964--6820805 Score: 1326
Period size: 132 Copynumber: 6.4 Consensus size: 132
6819954 CTACTCCGCT
* * * * *
6819964 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* **
6820029 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
6820094 CC
131 CC
* * *
6820096 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
6820161 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
6820226 CC
131 CC
*
6820228 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
6820293 GCTTGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
6820358 CC
131 CC
* * * *
6820360 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
6820425 GCTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
6820490 CC
131 CC
* * * * * *
6820492 ACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
6820557 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTT-AGAAAGATAAGATTTGACATCTTCGATCTGC
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGA-AAAGATAAGATTTGCCGTCTTTGATCTGC
*
6820621 TTC
130 TCC
* * * *
6820624 ACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
6820689 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
6820754 TC
131 CC
6820756 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
6820806 ACTGCTTAGG
Statistics
Matches: 659, Mismatches: 49, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 658 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
CC
Found at i:6820373 original size:839 final size:833
Alignment explanation
Indices: 6817909--6821574 Score: 4133
Period size: 839 Copynumber: 4.4 Consensus size: 833
6817899 GAGGATAAAA
* * * * *
6817909 CTTGTTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
*
6817974 CTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
*
6818039 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTTGATCTGC
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
*
6818104 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGAC
196 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAC
* *
6818169 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCT
261 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
* * * * * *
6818234 GCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGAGAG
326 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTACTGCTTAGGGAG
* * *** * * * * ** **
6818299 ACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGAT
391 AAAAAGCTCAAT-GCTTAAACCTACTTCCCACTATCATGG-AAGACAAGACTTGCCGGCTTAAAT
** * *
6818364 CTGCTT-CACTACTGCTTAGGGAGATAAGA-TCTACAATCTTCAACCTACTCCGCTACTACTGCT
454 CTGCTTCCACTACTGCTTAGAAAGATAAGATTTTAC-ATCTTCAACCTGCT-C-C-ACTACTGCT
* * *
6818427 TAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGGCTTGGTGG
515 TAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTCAAGGAGACAAGGCTTGGTGG
* * *
6818492 CTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTG
580 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTG
* * * *
6818557 CTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGAGACAAGGCTTGGC
645 CTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTCTCAGGGAGACAAGGCTTGGC
* * * *
6818622 GGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTAC
709 GGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTAC
* * *
6818687 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCACCGCTGCCTTTCAGGGAGACAAGG
774 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTCTCAGGGAGACAAGG
* * * *
6818748 CTTGGCGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTCTGATCTGCT
1 CTTGGTGGCTTAAATCTGCTTCCCACTATC-TTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
* * * * ** *
6818812 CCACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGGAGACA
65 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACA
* * * * *
6818877 AGGCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAATCTG
130 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTG
*
6818942 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGTTCAGGGAGA
195 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGA
* * *
6819007 CAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATC
260 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
* * * * *
6819072 TG-TTCTACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGCT-TTTCAGG
325 TGCTTC-ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTACTGCTT-AGG
* * *** ** * * * * * *
6819135 GAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTT
388 GAGAAAAAGCTCAAT-GCTTAAACCTACTTCCCACTATCATGG-AAGACAAGACTTGCCGGCTTA
* * ** * * * * * * **
6819200 GATCTGC-TCTACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTT
451 AATCTGCTTCCACTACTGCTTAGAAAGATAAGATTTTACATCTTCAACCTGCTCCACTACTGCTT
* * ** * * * ** * ** * **
6819264 AGGGAG-TCAAG-GCTTGGC-GGCTTAAATCTACT-TCCCACT-ATCTTGGAAAGATAAGATTTG
516 AGGGAGAT-AAGATC-T-ACAATCTTCAACCTACTCTGCTGCTGCTCAAGG--AGACAAGGCTTG
** * ** * * * * ** * *
6819324 CCGTCTTTGATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATCTACAATCTTCAACCTACTCC
576 GTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCATCTTTGATCTGCTCC
* * * * *** * * * * * * *
6819386 GCTGCTGCTCAGAGAGACAAGA-CT-TGGTGGCTTAAATCTGCTTCTCACT-ATCT-TGGAAAGA
638 ACTACTGCTTAGAGAGATAAGATCTACAAT--CTTCAACCTAC-TC-CGCTGCTCTCAGG-GAGA
* ** * ** ** * * * * * **
6819447 TAAGATTTGCCATCTTTGATCTGCTTCACAACT-GCTTAGG-GAGATAAGA-TCGACAATCTTCA
698 CAAGGCTTGGCGGCTTAAATCTGCTTCCCAA-TATCTT-GGAAAGATAAGATTTG-CCATCTTTG
* * * * *
6819509 ACCTACTCCGCTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCT
760 ATCTGCT-C-C-ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT-CT
* *
6819574 CATGGTGACAAGG
821 CAGGGAGACAAGG
*
6819587 CTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* *
6819652 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
* * *
6819717 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTCTGC
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
* * * *
6819782 TCTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGAC
196 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAC
*
6819847 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
261 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
6819912 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAGG
326 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG-T--TACTGCTTAGG
* * * * * * **
6819977 GAGATAAAATCTACAAT-TTTCAACCTAC-TCCGCTACTGCTCATGG-TGACAAGGCTTGGTGGC
388 GAGA-AAAAGCT-CAATGCTTAAACCTACTTCC-C-ACT-ATCATGGAAGACAAGACTTGCCGGC
* * * ** *
6820039 TTAAATCTGTTTCCCACTA-T-CTT-GAAAAGATAAGATTTTTCGTCTTTGATCTGCTCCACTAC
448 TTAAATCTGCTT-CCACTACTGCTTAG-AAAGATAAGATTTTACATCTTCAACCTGCTCCACTAC
*
6820101 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAGGCTTG
511 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTCAAGGAGACAAGGCTTG
**
6820166 GTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGCTCCACT
576 GTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACT
* *
6820231 ACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCT
641 ACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT-CTCAGGGAGACAAGGCT
* *
6820296 TGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCA
705 TGGCGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCA
* * *
6820361 CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAAGG
770 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT-CTCAGGGAGACAAGG
*
6820426 CTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * * * * *
6820491 CACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
* * *
6820556 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT-AGAAAGATAAGATTTGACATCTTCGATCTG
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGA-AAAGATAAGATTTGCCGTCTTTGATCTG
* * * * *
6820620 CTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATA
195 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGA
6820685 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
260 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
6820750 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTGCTTAG
325 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG-T--TACTGCTTAG
* * * * * * * **
6820815 GGAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGC--TCAAGG-AGACAAGGCTTGGTG
387 GGAGA-AAAAGCT-CAATGCTTAAACCTACT-T-C-CCA-CTATCATGGAAGACAAGACTTGCCG
* * ** * ** *
6820876 GCTTAAATCTACTTCTCACTA-T-CTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTA
446 GCTTAAATCTGCTTC-CACTACTGCTTAGAAAGATAAGATTTTACATCTTCAACCTGCTCCACTA
* * * *
6820939 CTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGGCTT
510 CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTCAAGGAGACAAGGCTT
* *
6821004 GGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCAC
575 GGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCAC
*
6821069 TACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGGC
640 TACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT-CTCAGGGAGACAAGGC
* * * * *
6821134 TTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTTC
704 TTGGCGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCC
* * * * ** *
6821199 ACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTACATTGCTTTTCAGGGAGACAAG
769 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGC-TCTCAGGGAGACAAG
6821264 G
833 G
* * * * * * *
6821265 CTTGGCGACTTAAATCTACTTCCCACTATCTCGGAAAGATAAGATTTACCGTCTTTGATCTGCTA
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * ** *
6821330 CACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTCAGGGAGTCAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
* ** * * *
6821395 GGCTAGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGC
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
* *
6821460 TCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGAC
196 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAC
*
6821525 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT
261 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT
6821575 ACTCCGTTGC
Statistics
Matches: 2396, Mismatches: 366, Indels: 130
0.83 0.13 0.04
Matches are distributed among these distances:
834 11 0.00
835 13 0.01
836 139 0.06
837 6 0.00
838 16 0.01
839 1933 0.81
840 14 0.01
841 16 0.01
842 202 0.08
843 24 0.01
844 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (833 bp):
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAC
AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTACTGCTTAGGGAG
AAAAAGCTCAATGCTTAAACCTACTTCCCACTATCATGGAAGACAAGACTTGCCGGCTTAAATCT
GCTTCCACTACTGCTTAGAAAGATAAGATTTTACATCTTCAACCTGCTCCACTACTGCTTAGGGA
GATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAA
TCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGA
GAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCTCAGGGAGACAAGGCTTGGCGGCTTAA
ATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCTCAGGGAGACAAGG
Found at i:6820817 original size:47 final size:47
Alignment explanation
Indices: 6820757--6820851 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
6820747 ATCTGCTTCA
6820757 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
* *
6820804 CTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
6820851 C
1 C
6820852 AGCTCAAGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (47 bp):
CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
Found at i:6820869 original size:179 final size:179
Alignment explanation
Indices: 6820625--6820984 Score: 605
Period size: 179 Copynumber: 2.0 Consensus size: 179
6820615 ATCTGCTTCA
* * * *
6820625 CTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAGG
1 CTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAGG
* *
6820690 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTT
66 CTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTC
*
6820755 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
131 CACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
* *
6820804 CTACTGCTTAGGGAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAG
1 CTACTGCTTAGGGAGATAAGATATACAATCTTT-AACCTACTCCGCTGCAGCTCAAGGAGACAAG
* *
6820868 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
6820933 CCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
130 CCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
6820983 CT
1 CT
6820985 GCTCAGGGAG
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
178 3 0.02
179 166 0.98
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (179 bp):
CTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAGG
CTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTC
CACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
Found at i:6820936 original size:443 final size:443
Alignment explanation
Indices: 6820361--6821237 Score: 1461
Period size: 443 Copynumber: 2.0 Consensus size: 443
6820351 ATCTGCTCCA
* *
6820361 CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAAGG
1 CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCACTCAAGGAGACAAGG
*
6820426 CTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * *
6820491 CACTAATGCTTATG-GAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACA
131 CACTAATGCTTA-GAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACA
6820555 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
195 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
* * * * *
6820620 CTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATA
260 CTCCACTACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGA
6820685 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
325 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
*
6820750 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG
390 TGCTTCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGCTG
* * *
6820804 CTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTG-CAGCTCAAGGAGACAAG
1 CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCA-CTCAAGGAGACAAG
*
6820868 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
* * *
6820933 CCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACC
130 CCACTAATGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACA
* * * * *
6820998 AGGCTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTG
195 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
*
6821063 CTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGA
260 CTCCACTACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGA
* * *
6821128 CCAGGCTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATC
325 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
*
6821193 TGCTTCACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCT
390 TGCTTCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCT
6821238 TCTACATTGC
Statistics
Matches: 403, Mismatches: 29, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
442 2 0.00
443 401 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (443 bp):
CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCACTCAAGGAGACAAGG
CTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CACTAATGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGC
TCCACTACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAC
AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
GCTTCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTACTCCGCTG
Found at i:6820940 original size:311 final size:311
Alignment explanation
Indices: 6820497--6821116 Score: 1008
Period size: 311 Copynumber: 2.0 Consensus size: 311
6820487 GCTCCACTAA
* * * * *
6820497 TGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAAGGCTTG
1 TGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAGGCTTG
* *
6820562 GTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCTTCACT
66 GTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCTCCACT
* * * *
6820627 ACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAGGCT
131 ACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCT
*
6820692 TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCA
196 TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCA
*
6820757 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTAC
261 CTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTAC
* *
6820808 TGCTTAGGGAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGGCTT
1 TGCTTAGGGAGATAAGATATACAATCTTT-AACCTACTCCGCTGCAGCTCAAGGAGACAAGGCTT
* * * * *
6820872 GGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCAC
65 GGTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCTCCAC
* *
6820937 TACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGGC
130 TACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGC
* *
6821002 TTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
195 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCC
6821067 ACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
260 ACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
6821117 GCTCAGGGAG
Statistics
Matches: 284, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
310 3 0.01
311 281 0.99
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (311 bp):
TGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAGGCTTG
GTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCTCCACT
ACTGCTTAGAGAGATAAGATATACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCT
TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCA
CTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTAC
Found at i:6821041 original size:132 final size:132
Alignment explanation
Indices: 6820804--6823260 Score: 1571
Period size: 132 Copynumber: 18.3 Consensus size: 132
6820794 TACTCCGCTG
* * * *
6820804 CTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* *
6820869 CTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6820934 CA
131 CA
* *
6820936 CTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
*
6821001 CTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6821066 CA
131 CA
* *
6821068 CTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* *
6821133 CTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTT
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6821198 CA
131 CA
* * * * ** **
6821200 CTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTACATTGCTTTTCAGGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* * * * * *
6821265 CTTGGCGACTTAAATCTACTTCCCACTATCTCGGAAAGATAAGATTTACCGTCTTTGATCTGCTA
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6821330 CA
131 CA
* * ** *
6821332 CTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTCAGGGAGTCAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* ** * *
6821397 CTAGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6821462 CA
131 CA
* * *
6821464 CTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAGA
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* * *
6821529 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTACT-CCGT-TGCTGCTCAG
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT--TGCCGTCT-TTGATCTG
****
6821592 GGAGA
128 CTCCA
** * * ** * * * * ** * *
6821597 C-AAGGCTTGGTGGCTTAAATCTGCTTCCCACAATTTTGAAAAGATAAGATTTACCGTCT-TTGC
1 CTACTGCTTAG-GG---AGATAAG-AT-CTACAATCTT--CAACCT---A-CT-CCG-CTGCTGC
* **** ** * *
6821660 TCTGCTCCACTACTGCTTAGG-GAG-ATAAGATC-GACAATCTTCAACCTACTCTGCTGCTGCTC
52 TCAGGGAGAC-AAGGCTT-GGTG-GCTTAA-ATCTG-----CTTC--CC-ACTAT-CT--TG---
** * * ** * **
6821722 AGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCA
99 -GAAAGATAAGATTTGCCGTCTTTGATCTGC-T-CCA
* * * * ** * ** * * ** * * *
6821759 CTA-T-CTT-GGAAAGATAAGATTTGCCATCTTTGATCTGTTTCACAACTGCTTAGGTAGATAAG
1 CTACTGCTTAGG-GAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *** * * * * * * **
6821821 ATCTACAAT--CTTCAACCTAC-TCCGCTACTACTGCTTACGG--AGATAAAATCTACAAT-TTT
65 -GCT-TGGTGGCTTAAATCTGCTTCC-C-ACTA-T-CTT--GGAAAGATAAGATTTGCCGTCTTT
* * * *
6821880 CAACCTACTCCG
122 -GATCTGCTCCA
* * * * * *** * * ** * * **
6821892 CTACTGCTCATGGTGACAAG-GCT-TGGTGGCTTAAATCTGTTTCCGACT-AT-CT-TGAAAAGA
1 CTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAACCT-ACTCCG-CTGCTGCTCAG-GGAGA
* ** *** * ** * ** *
6821952 TAAGATTTTCCGTCTTTGATCTGC-T-CCACTACTTCTTAGG-GAGATAAGATCTT-CAATCTTC
61 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA--TCTT-GGAAAGATAAGAT-TTGCCGTCTTT
* * * **
6822013 AACCTACTCTG
122 GATCTGCTCCA
* * * * * * *** * * * * * * * *
6822024 TTGCTGCTCAAGGAGACAAG-GCT-TGGTGGCTTAAATCTGCTTCC-C-ACT-ATCCTGGAAAGT
1 CTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAACCTAC-TCCGCTGCTGCT-CAGG-GAGA
* ** * ** * * * ** *
6822084 TAAGATTTGCG-GTCTTTGATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATCTACAATCTTC
61 CAAGGCTTG-GTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCTTT
* * * *
6822145 AACCTACTCCG
122 GATCTGCTCCA
* * * * *** * * * * * * *
6822156 CTGCTGCTCAGAGAGACAAGA-CT-TGGTGGCTTAAATCTGCTTCC-C-ACT-ATCTTGGAAAGA
1 CTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAACCTAC-TCCGCTGCTGCTC-AGG-GAGA
** **** ** * * * * ** **
6822216 CAAGATTTGCCATCTTTGATCAGCTT--CACTACTGCTTAGG-GAGATAAGATCTACAATCTTCA
61 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCTTTG
* *
6822278 ACCTCCTCCGCTA
123 ATCTGCT-C-C-A
* * * * *
6822291 CTACTGCTTAGGAAAATAAGATCTACAATTTTCAACCTACTCCGCTGCTACTCAAGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* * * *
6822356 CTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6822421 CA
131 CA
* * * * *
6822423 CTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTGCTTAAGGAGACAAGA
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* *
6822488 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACTGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6822553 CA
131 CA
* *
6822555 TTACTGCTTAGGGAGATAAGATCTACAATCTTCAACGTACTCCGCTGCTGCTCAGGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
6822620 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6822685 CA
131 CA
* * *
6822687 TTACTGCTTAGGGAGATAAGATCTACAATCTTCAACGTACTCCGCTGCTGCTCTGGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* * * * *
6822752 CTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAACATAAGATTTGCCATCTTCGATCTGCTT
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6822817 CA
131 CA
* ** *
6822819 CTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTTTTCCGCTGCCT-TTCAGGGAGACAAG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTGCTCAGGGAGACAAG
* * * *
6822883 GCTTGGCGGCTTAAACCTACTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6822948 CCA
130 CCA
* * * * * ** *
6822951 CTACTGCTTAGGAAGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
*
6823016 CTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6823081 CA
131 CA
*
6823083 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGG
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
* * *
6823148 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAATCTGCTT
66 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
6823213 CA
131 CA
* * *
6823215 CAACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTGCTCCGCT
1 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6823261 ACTACTGCTT
Statistics
Matches: 1911, Mismatches: 322, Indels: 184
0.79 0.13 0.08
Matches are distributed among these distances:
130 3 0.00
131 7 0.00
132 1601 0.84
133 28 0.01
134 16 0.01
135 109 0.06
136 15 0.01
137 10 0.01
138 8 0.00
139 2 0.00
140 8 0.00
141 7 0.00
142 1 0.00
143 1 0.00
144 1 0.00
145 10 0.01
146 13 0.01
147 10 0.01
148 10 0.01
149 2 0.00
151 4 0.00
153 4 0.00
154 4 0.00
155 7 0.00
156 1 0.00
157 6 0.00
159 2 0.00
160 5 0.00
161 13 0.01
162 2 0.00
163 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CA
Found at i:6821590 original size:73 final size:73
Alignment explanation
Indices: 6821509--6821647 Score: 242
Period size: 73 Copynumber: 1.9 Consensus size: 73
6821499 CCTACTCTGC
* *
6821509 TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACAATCTTGAAAAGATAAGAT
6821574 TACTCCGT
66 TACTCCGT
* *
6821582 TGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACAATTTTGAAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACAATCTTGAAAAGATAAGAT
6821647 T
66 T
6821648 TACCGTCTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (73 bp):
TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACAATCTTGAAAAGATAAGAT
TACTCCGT
Found at i:6821735 original size:205 final size:205
Alignment explanation
Indices: 6821383--6821779 Score: 695
Period size: 205 Copynumber: 1.9 Consensus size: 205
6821373 CCGCTGCTTT
* * * **
6821383 TCAGGGAGTCAAGGCTAGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTAGGCAGCTTAAATCTACTTCCCACAATCTTGAAAAGATAAGATTTACCG
6821448 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCT
6821513 GCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTACT
131 GCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTACT
6821578 CCGTTGCTGC
196 CCGTTGCTGC
* ** * *
6821588 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACAATTTTGAAAAGATAAGATTTACCG
1 TCAGGGAGACAAGGCTAGGCAGCTTAAATCTACTTCCCACAATCTTGAAAAGATAAGATTTACCG
*
6821653 TCTTTGCTCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCT
6821718 GCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT
131 GCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT
6821780 TGCCATCTTT
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
205 181 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (205 bp):
TCAGGGAGACAAGGCTAGGCAGCTTAAATCTACTTCCCACAATCTTGAAAAGATAAGATTTACCG
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCT
GCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTACT
CCGTTGCTGC
Done.