Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 21 of 161
Found at i:6821866 original size:47 final size:47
Alignment explanation
Indices: 6821803--6821896 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
6821793 CTGTTTCACA
*
6821803 ACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCTACT
1 ACTGCTTAGGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
*
6821850 ACTGCTTACGG-AGATAAAATCTACAATTTTCAACCTACTCCGCTACT
1 ACTGCTTA-GGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
6821897 GCTCATGGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 42 0.95
48 2 0.05
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (47 bp):
ACTGCTTAGGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
Found at i:6821970 original size:179 final size:179
Alignment explanation
Indices: 6821668--6822021 Score: 528
Period size: 179 Copynumber: 2.0 Consensus size: 179
6821658 GCTCTGCTCC
* * * *
6821668 ACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
* *
6821733 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
* *
6821798 TCACAACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * * *
6821847 ACTACTGCTTACGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
* * * * *
6821912 GCTTGGTGGCTTAAATCTGTTTCCGACTATCTTGAAAAGATAAGATTTTCCGTCTTTGATCTGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
* * *
6821977 CCACTACTTCTTAGGGAGATAAGATCTTCAATCTTCAACCTACTC
131 CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC
6822022 TGTTGCTGCT
Statistics
Matches: 155, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
179 155 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (179 bp):
ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6822310 original size:47 final size:47
Alignment explanation
Indices: 6822243--6822342 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
6822233 GATCAGCTTC
* * *
6822243 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTCCTCCGCT
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCT
*
6822290 ACTACTGCTTAGGAAAATAAGATCTACAATTTTCAACCTACTCCGCT
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCT
*
6822337 GCTACT
1 ACTACT
6822343 CAAGGAGACA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6822411 original size:179 final size:179
Alignment explanation
Indices: 6822111--6822468 Score: 583
Period size: 179 Copynumber: 2.0 Consensus size: 179
6822101 GATCTGCTCC
* * *
6822111 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGAGAGACAAG
6822176 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCAGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCAGCT
* * *
6822241 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTCCTCCGCT
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
*
6822290 ACTACTGCTTAGGAAAATAAGATCTACAATTTTCAACCTACTCCGCTGCTACTCA-AGGAGACAA
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGA-GAGACAA
* * * * * *
6822354 GGCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGC
65 GACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCAGC
6822419 TCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
130 TCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6822469 GTTGCTTAAG
Statistics
Matches: 165, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
178 1 0.01
179 164 0.99
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (179 bp):
ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGAGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCAGCT
CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6822413 original size:443 final size:443
Alignment explanation
Indices: 6820516--6822732 Score: 2235
Period size: 443 Copynumber: 4.9 Consensus size: 443
6820506 AGATTAGATA
* * * * *
6820516 TACAATCTTT-AACCTACTCCGTTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTC
1 TACAAT-TTTCAACCTACTCCGCTACTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTC
** * * *
6820580 CCACTATCTT-AGAAAGATAAGATTTGACATCTTCGATCTGCTTCACTACTGCTTAGGGAGATAA
65 CCACTATCTTGA-AAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAA
* * * *
6820644 GATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAGGCTTGGTGGCTTAAATCTGC
129 GATCTACAATCTTCAACCTACTCCGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGC
* * *
6820709 TTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGAT
194 TTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGAT
* * *** * *
6820774 AAGATCTACAATCTTCAACCTACTCCGCTGCTACTGCTTAGGGAGATAAGATCTACAAT--TTTC
259 AAGATCTACAATCTTCAACCTACTCCGCTG---CTGCTCAGGGAGACAAGA-CT-TGGTGGCTTA
* * * ** * ** **** ** *
6820837 AACCTACTCTGCTGCAGC--TCAAGG--AGACAAGGCTTGGTGGCTTAAATCTACTTCTCACTA-
319 AATCTGCT-T-C-CCA-CTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGC-T-TCACTAC
* * * ** ** * * * *
6820897 T-CTT-GGAAAGATAAGATTTGCCGTCTTTGATCTGCT-C-C-ACTACTGCTTA-GAGAGATAAG
378 TGCTTAGG-GAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTACG-GAAATAAA
6820956 ATC
441 ATC
* * * * * * *
6820959 TACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGGCTTGGTGGCTTATATCTGCTTCC
1 TACAATTTTCAACCTACTCCGCTACTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCC
* * * * *
6821024 CACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGA
66 CACTATCTTGAAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA
* * * *
6821089 TCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAGGCTTGGTGGCTTATATCTGCTT
131 TCTACAATCTTCAACCTACTCCGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
* * * *
6821154 CCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTTCACTACTGTTTAGGGACATAA
196 CCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
* * ** ** * * * *
6821219 GATCTACAATCTTCAACCTTCTACATTGCTTTTCAGGGAGACAAGGCTTGGCGACTTAAATCTAC
261 GATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGC
* * * *
6821284 TTCCCACTATCTCGGAAAGATAAGATTTACCGTCTTTGATCTGCTACACTACTGCTTAGGGAGAT
326 TTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGAT
* * * * * * **
6821349 AAGATCTAAAATCTTCAACCTTCTCCGCTGCT--T--TT-CAGGGAGTCAAGGC
391 AAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAC-GGAAATAAAATC
** * * ** * * * * **
6821398 TAGGC-AGCTTAAATCTACTTCC-C-ACTA-TCTTGGAAAGATAA-GATTTGTCGTCTTTGATCT
1 TA--CAATTTTCAACCTAC-TCCGCTACTACTCAAGG--AGACAAGGCTTGGT-GGCTTAAATCT
* * * * *
6821458 G-CT-CCACTACTGCTTAGGGAGATAAGATCGACA-ATCTTCAACCTACTCTGCTGCTGCTCAGG
60 GTTTCCCACTA-T-CTT---GA-A-AAGAT--A-AGATTTTC--CAT-CTTTGAT-CTGCTC---
* ** * * ** * * * * **
6821520 GAGAC-AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTACTCCGTTG
108 --CACTACTACTTAG-GG---AGATAAG-AT-CTACAATCTT-------CAA-CCTACTCCGTTG
* * * *
6821584 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACAATTTTGAAAAGATAAGATTT
157 CTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
* * *
6821649 ACCGTCTTTGCTCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGC
222 ACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGC
6821714 TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
287 TGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * *
6821779 TTGCCATCTTTGATCTGTTTCACAACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCC
352 TTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCC
*
6821844 GCTACTACTGCTTACGGAGATAAAATC
417 GCTACTACTGCTTACGGAAATAAAATC
* * *
6821871 TACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAGGCTTGGTGGCTTAAATCTGTTTCC
1 TACAATTTTCAACCTACTCCGCTACTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCC
* * *
6821936 GACTATCTTGAAAAGATAAGATTTTCCGTCTTTGATCTGCTCCACTACTTCTTAGGGAGATAAGA
66 CACTATCTTGAAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA
* *
6822001 TCTTCAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
131 TCTACAATCTTCAACCTACTCCGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
* * * *
6822066 CCCACTATCCTGGAAAGTTAAGATTTGCGGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
196 CCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
*
6822131 GATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAGACTTGGTGGCTTAAATCTGC
261 GATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGC
* *
6822196 TTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCAGCTTCACTACTGCTTAGGGAGAT
326 TTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGAT
* *
6822261 AAGATCTACAATCTTCAACCTCCTCCGCTACTACTGCTTA-GGAAAATAAGATC
391 AAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTACGG-AAATAAAATC
*
6822314 TACAATTTTCAACCTACTCCGCTGCTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCC
1 TACAATTTTCAACCTACTCCGCTACTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCC
* *
6822379 CATTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA
66 CACTATCTTGAAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA
* * * *
6822444 TCTACAATCTTCAACCTACTCCGCTGTTGCTTAAGGAGACAAGACTTGGTGGCTTAAATCTGCTT
131 TCTACAATCTTCAACCTACTCCGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
* *
6822509 CCCACTATCTTGGAAAGATAAGATTTACTGTCTTTGATCTGCTCCATTACTGCTTAGGGAGATAA
196 CCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
* *
6822574 GATCTACAATCTTCAACGTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGC
261 GATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGC
* * *
6822639 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCATTACTGCTTAGGGAGAT
326 TTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGAT
*
6822704 AAGATCTACAATCTTCAACGTACTCCGCT
391 AAGATCTACAATCTTCAACCTACTCCGCT
6822733 GCTGCTCTGG
Statistics
Matches: 1477, Mismatches: 227, Indels: 140
0.80 0.12 0.08
Matches are distributed among these distances:
436 1 0.00
437 2 0.00
438 20 0.01
439 22 0.01
440 89 0.06
441 8 0.01
442 5 0.00
443 926 0.63
444 3 0.00
445 5 0.00
447 5 0.00
448 1 0.00
449 2 0.00
450 5 0.00
451 13 0.01
452 1 0.00
453 4 0.00
455 5 0.00
456 7 0.00
457 5 0.00
459 4 0.00
460 1 0.00
461 14 0.01
462 5 0.00
463 2 0.00
464 1 0.00
465 6 0.00
467 5 0.00
468 3 0.00
469 245 0.17
471 5 0.00
472 26 0.02
473 20 0.01
474 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (443 bp):
TACAATTTTCAACCTACTCCGCTACTACTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCC
CACTATCTTGAAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA
TCTACAATCTTCAACCTACTCCGTTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
CCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
GATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTAAATCTGC
TTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGAT
AAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTACGGAAATAAAATC
Found at i:6822414 original size:311 final size:311
Alignment explanation
Indices: 6821668--6822600 Score: 990
Period size: 311 Copynumber: 3.0 Consensus size: 311
6821658 GCTCTGCTCC
* * * * * *
6821668 ACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
* * *
6821733 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
* * * * * * *
6821798 TCACAACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTACGGAG
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG---CTGCTGCTCAAGGAG
* * *** * * * * * * * ** *****
6821863 ATAAAATCTACAAT--TTTCAACCTAC-TCCGCTACTGCTCATGG--TGACAAGGCTTGGTGGCT
193 ACAAGA-CT-TGGTGGCTTAAATCTGCTTCC-C-ACT-ATCTTGGAAAGACAAGATTTACCATCT
** * * ** * * ** ** * *
6821923 TAAATCTGTTTCCGACTA-T-CTT-GAAAAGATAAGATTTTCCGTCTTTGATCTGCT-C-C-
253 TTGATCAG-CTCC-ACTACTGCTTAG-GGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * * * * * *
6821979 ACTACTTCTTAGGGAGATAAGATCTTCAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
* **
6822044 GCTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAAGTTAAGATTTGCGGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
*
6822109 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTC-AGAGAGAC
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAG-GAGAC
*
6822173 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCA
195 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTACCATCTTTGATCA
* *
6822238 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTCCTCCGCT
260 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
*
6822290 ACTACTGCTTAGGAAAATAAGATCTACAATTTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
1 ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
* * * *
6822355 GCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
* *
6822420 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTGCTTAAGGAGACA
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGGAGACA
* ** *
6822485 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACTGTCTTTGATCTG
196 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTACCATCTTTGATCAG
* *
6822550 CTCCATTACTGCTTAGGGAGATAAGATCTACAATCTTCAACGTACTCCGCT
261 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6822601 GCTGCTCAGG
Statistics
Matches: 532, Mismatches: 77, Indels: 26
0.84 0.12 0.04
Matches are distributed among these distances:
306 10 0.02
307 9 0.02
308 61 0.11
309 5 0.01
310 1 0.00
311 444 0.83
312 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (311 bp):
ACTACTGCTTAGGAAAATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCCTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTACCATCTTTGATCAG
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6822572 original size:44 final size:44
Alignment explanation
Indices: 6822392--6822708 Score: 117
Period size: 44 Copynumber: 7.2 Consensus size: 44
6822382 TATCTTGGAA
* ** *
6822392 AGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTACTGTCTTTGATCTGCTCCACTACTGCTTAGGG
* ** ** * * * ** *
6822436 AGATAAGATCTACAATCTTCAACCTACTCCGCTGTTGCTTAAGG
1 AGATAAGATTTACTGTCTTTGATCTGCTCCACTACTGCTTAGGG
* * ** * ** *
6822480 AGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTACTGTCTTTGATCTGC-T-CCACTACTGCTTAGG-G
*
6822524 AGATAAGATTTACTGTCTTTGATCTGCTCCATTACTGCTTAGGG
1 AGATAAGATTTACTGTCTTTGATCTGCTCCACTACTGCTTAGGG
* ** * * * * * *
6822568 AGATAAGATCTACAATC-TTCAACGTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTACTGTCTTTGATC-TGCTCCACTACTGCTTAGGG
* ** ** * ** *
6822612 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTACTGTCTTTGATCTGC-T-CCACTACTGCTTAGG-G
* * *
6822656 AGATAAGATTTGCCGTCTTTGATCTGCTCCATTACTGCTTAGGG
1 AGATAAGATTTACTGTCTTTGATCTGCTCCACTACTGCTTAGGG
6822700 AGATAAGAT
1 AGATAAGAT
6822709 CTACAATCTT
Statistics
Matches: 186, Mismatches: 73, Indels: 28
0.65 0.25 0.10
Matches are distributed among these distances:
42 10 0.05
43 11 0.06
44 146 0.78
45 11 0.06
46 8 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTACTGTCTTTGATCTGCTCCACTACTGCTTAGGG
Found at i:6822968 original size:44 final size:44
Alignment explanation
Indices: 6822919--6824207 Score: 214
Period size: 44 Copynumber: 29.2 Consensus size: 44
6822909 CTATCTTGGA
*
6822919 AAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
** * * **
6822963 AAGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** ** * *
6823007 GAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GG
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* *
6823050 AAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 -AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** * * * * * *
6823095 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** *** * *
6823139 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GG
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* * * *
6823182 AAAGATAAGATTTGCCATCTTTAATCTGCTTCACAACTGCTTAGG
1 -AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** *
6823227 GAGATAAGATCTACAATCTTTAACCTGCTCCGCTACTACTGCTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGG
* * * ** * ** * *
6823274 GAGATAAAATCTACAAT-TTTCAACCTTTTCCGCTACTGCTCATGG
1 AAGATAAGATTTACCGTCTTT-AATCTGCTCCACTACTGCTTA-GG
* * ** *** * * * *
6823319 -TGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GAA
1 AAGATAAGATTTACCGTCTTTAATCTG-CT-CCACTACTGCTTAG-G
* * *
6823362 AAGATAAGATTTTCCGTTTTTGATCTGCTCCACTACTGCTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** * * * * * *
6823406 GAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCA-G
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* ** *** * *
6823449 AGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GG
1 A-AGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* * * *
6823493 AAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTACTTAGG
1 -AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** * * * ** *
6823538 GAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTTAAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTT-AGG
* * *** * * *
6823583 -AGACAAGACTTGGTGGCTTAAATCTGCTTCTCACTA-T-CTTGGG
1 AAGATAAGATTTACCGTCTTTAATCTGC-TC-CACTACTGCTTAGG
* *
6823626 AAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** * * * * *
6823670 GAGATAAGATCTACAATCTTCAA-CGTACTCCGCTGCTGCTCAGG
1 AAGATAAGATTTACCGTCTTTAATC-TGCTCCACTACTGCTTAGG
* * ** *** * *
6823714 GAGACAAGGCTTGGTGGCTCTAATCTGCTTCCCACTA-T-CTT-GG
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* ** * **
6823757 AAAGATAAGATTTGCCGTCTTCGATCTGCTTCACTACTATTTAGG
1 -AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * * ** * * * ** * *
6823802 GACATAAGATCTACAATCTTCAACCTTCTCCGTTGCT-TTTCAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTT-AGG
* * * *** * * * * *
6823846 GAGACAAGGTTTGGTGACTTAAATCTACTTCCCACTA-T-CTCAGA
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
*
6823890 AAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** * * * ** * *
6823934 GAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCT-TTTCAGG
1 AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTT-AGG
* * * *** * * *
6823978 GAGACAAGGTTTGGTGACTTAAATCTACTTCCCACTA-T-CTT-GG
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* * *
6824021 AAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTAATGCTTA-G
1 -AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
** * * ** **
6824065 AGAGATAAGATTTACAATCTTTAACCTACTCCACTTTTTTTTAGG
1 A-AGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
* * ** ** * *
6824110 GAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTA-T-CTTA-G
1 AAGATAAGATTTACCGTCTTTAATCTGC-T-CCACTACTGCTTAGG
* *
6824153 AATGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 AA-GATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
*
6824198 GAGATAAGAT
1 AAGATAAGAT
6824208 CTATACTCTT
Statistics
Matches: 845, Mismatches: 333, Indels: 134
0.64 0.25 0.10
Matches are distributed among these distances:
42 51 0.06
43 39 0.05
44 635 0.75
45 45 0.05
46 41 0.05
47 34 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
AAGATAAGATTTACCGTCTTTAATCTGCTCCACTACTGCTTAGG
Found at i:6823280 original size:47 final size:47
Alignment explanation
Indices: 6823217--6823310 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
6823207 CTGCTTCACA
*
6823217 ACTGCTTAGGGAGATAAGATCTACAATCTTT-AACCTGCTCCGCTACT
1 ACTGCTTAGGGAGATAAAATCTACAAT-TTTCAACCTGCTCCGCTACT
**
6823264 ACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTTTTCCGCTACT
1 ACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTGCTCCGCTACT
6823311 GCTCATGGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 3 0.07
47 40 0.93
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (47 bp):
ACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTGCTCCGCTACT
Found at i:6823326 original size:179 final size:179
Alignment explanation
Indices: 6823082--6823439 Score: 572
Period size: 179 Copynumber: 2.0 Consensus size: 179
6823072 GATCTGCTCC
* *
6823082 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAG
*
6823147 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTAATCTGCT
* * *
6823212 TCACAACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTGCTCCGCT
131 CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * * *
6823261 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTTTTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAG
* * * * *
6823326 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTCCGTTTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTAATCTGCT
*
6823391 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6823440 GCTGCTCAGA
Statistics
Matches: 163, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
179 163 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (179 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTAATCTGCT
CCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6823368 original size:443 final size:443
Alignment explanation
Indices: 6822818--6823703 Score: 1398
Period size: 443 Copynumber: 2.0 Consensus size: 443
6822808 GATCTGCTTC
* * *
6822818 ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTTTTCCGCTGCCTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTTAACCTTTTCCGCTGACTCTCAGGGAGACAAG
*
6822883 GCTTGGCGGCTTAAACCTACTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTTGATCTGCT
66 GCTTGGCGGCTTAAACCTACTTCCCACTATCTTGAAAAGATAAGATTTACCGTCTTTGATCTGCT
* * ** * *
6822948 CCACTACTGCTTAGGAAGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGGGAGACA
131 CCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGAGAGACA
*
6823013 AGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTG
196 AGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
* * *
6823078 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGA
261 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGGAGA
*
6823143 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAATC
326 CAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAATC
* * *
6823208 TGCTTCACAACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTGCTCCGCT
391 TGCTCCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* *
6823261 ACTACTGCTTAGGGAGATAAAATCTACAAT-TTTCAACCTTTTCCGCT-ACTGCTCATGGTGACA
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTT-AACCTTTTCCGCTGACT-CTCAGGGAGACA
* * ** * *
6823324 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTCCGTTTTTGATCTG
64 AGGCTTGGCGGCTTAAACCTACTTCCCACTATCTTGAAAAGATAAGATTTACCGTCTTTGATCTG
* * *
6823389 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGA
129 CTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGAGAGA
*
6823454 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
194 CAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
* *
6823519 TGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTTAAGGA
259 TGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGGA
* * * *
6823584 GACAAGACTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGCCGTCTTTGA
324 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAA
* *
6823649 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACGTACTCCGCT
389 TCTGCTCCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6823704 GCTGCTCAGG
Statistics
Matches: 403, Mismatches: 38, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
442 5 0.01
443 398 0.99
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (443 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTTAACCTTTTCCGCTGACTCTCAGGGAGACAAG
GCTTGGCGGCTTAAACCTACTTCCCACTATCTTGAAAAGATAAGATTTACCGTCTTTGATCTGCT
CCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGAGAGACA
AGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGGAGA
CAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAATC
TGCTCCACAACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6823445 original size:132 final size:132
Alignment explanation
Indices: 6823261--6824759 Score: 2228
Period size: 132 Copynumber: 11.4 Consensus size: 132
6823251 CTGCTCCGCT
* * ** * * *
6823261 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTTTTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * *
6823326 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTCCGTTTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6823391 CC
131 CC
*
6823393 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
6823458 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6823523 CC
131 CC
* * * *
6823525 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTTAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
6823590 ACTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6823655 CC
131 CC
*
6823657 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACGTACTCCGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
6823722 GCTTGGTGGCTCT-AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGC
66 GCTTGGTGGCT-TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
*
6823786 TTC
130 TCC
** * * * **
6823789 ACTACTATTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGCTTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * ** *
6823854 GTTTGGTGACTTAAATCTACTTCCCACTATCTCAGAAAGATAAGATTTACCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6823919 CC
131 CC
* * **
6823921 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
6823986 GTTTGGTGACTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6824051 CC
131 CC
* * * * * ** ** *
6824053 ACTAATGCTTAGAGAGATAAGATTTACAATCTTTAACCTACTCCACTTTTTTTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
6824118 GCTTAGTGGCTTAAATCTGCTTCCCACTATCTTAGAATGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6824183 CC
131 CC
* *
6824185 ACTACTGCTTAGGGAGATAAGATCTATACTCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
6824250 GCTTGGTGGCTTAAATATGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6824315 CC
131 CC
* * *
6824317 ACTACTGCTTAAGGG-GATAAGATCTACAATCTTCAACGTACTCCGCTACTGCTCAGAGAGACAA
1 ACTACTGCTT-AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
* * * * *
6824381 GACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTTC
65 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
*
6824446 TTC
130 TCC
* * *
6824449 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
** **
6824514 GCTTAATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTGGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
6824579 CC
131 CC
*
6824581 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * *
6824646 ACTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
6824711 TC
131 CC
6824713 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6824760 ACTACTTCTT
Statistics
Matches: 1237, Mismatches: 126, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
131 5 0.00
132 1227 0.99
133 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
CC
Found at i:6824599 original size:44 final size:44
Alignment explanation
Indices: 6824551--6825357 Score: 129
Period size: 44 Copynumber: 18.2 Consensus size: 44
6824541 TATCTTGGAA
* * *
6824551 AGATAAGATTTGTGGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * * *
6824595 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * *
6824639 AGACAAGACTTTGTG-GCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTTGCGATCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
6824683 AGACAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
6824727 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTTCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * * * * * * *
6824774 AGATAAGATCTACAAT-TTTCAACCTACTCCGCTACTGCTCAAGG
1 AGATAAGATTTGCGATCTTT-AATCTGCTCCACTACTGCTTAGGG
* ** * * * *
6824818 AGACAAGGCTTG-G-TGGCTTAAATCTGTTTCCCATTA-T-CTT-GGAA
1 AGATAAGATTTGCGAT--CTTTAATCTG-CT-CCACTACTGCTTAGG-G
* * * * * *
6824862 AGATAAGATTTTCTATCTTTGATTTGCTCTACTACTACTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * ** * *
6824906 AGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTTAAGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * **
6824950 AGACAAGACTTG-G-TGGCTTAAATCTGCTTCCCACTA-T-CTTAGAC
1 AGATAAGATTTGCGAT--CTTTAATCTGC-T-CCACTACTGCTTAGGG
* * *
6824994 TGACAAGATTTGCCG-TCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTG-CGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * *
6825038 AGATAAGATCTACAATCTTTAA-CCGACTCCGCTACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTG-CT-C-C-ACTACTGCTTAGGG
* * * * * * * * * *
6825085 AGATAAGATCTACAAT-TTTAAACCTACACCGCTGCTGCTCAAGG
1 AGATAAGATTTGCGATCTTT-AATCTGCTCCACTACTGCTTAGGG
* ** * * *
6825129 AGACAAGGCTTG-G-TGGCTTAAATCTGTTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCGAT--CTTTAATCTG-CT-CCACTACTGCTTAGG-G
* * * *
6825173 AGATAAGATTTTCCATCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * * *
6825217 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * *
6825261 AGACAAGACTTG-G-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCGAT--CTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
6825305 AGACAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
6825349 AGATAAGAT
1 AGATAAGAT
6825358 CTACAATCTT
Statistics
Matches: 522, Mismatches: 182, Indels: 118
0.64 0.22 0.14
Matches are distributed among these distances:
42 30 0.06
43 21 0.04
44 341 0.65
45 26 0.05
46 33 0.06
47 70 0.13
48 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTGCTTAGGG
Found at i:6824775 original size:47 final size:47
Alignment explanation
Indices: 6824713--6824809 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
6824703 GATCTGCTTC
6824713 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* *
6824760 ACTACTTCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
6824807 ACT
1 ACT
6824810 GCTCAAGGAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (47 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:6824804 original size:179 final size:179
Alignment explanation
Indices: 6824581--6824934 Score: 559
Period size: 179 Copynumber: 2.0 Consensus size: 179
6824571 GATCTGCTCC
*
6824581 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTC-AGAGAGACAA
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAG-GAGACAA
*
6824645 GACTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGC
65 GACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGC
* *
6824710 T-TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
130 TCT-ACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTCCGCT
* *
6824760 ACTACTTCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTACTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAGGAGACAAG
* * * * * * *
6824825 GCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCTATCTTTGATTTGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
6824890 CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTC
131 CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTC
6824935 GGCTGCTGCT
Statistics
Matches: 160, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
179 157 0.98
180 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (179 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAGGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTCCGCT
Found at i:6824858 original size:311 final size:311
Alignment explanation
Indices: 6824449--6825367 Score: 1554
Period size: 311 Copynumber: 3.0 Consensus size: 311
6824439 GATCTTCTTC
* * *
6824449 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAAGGAGACAAG
** * **
6824514 GCTTAATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGT-GGTCTTTGATCTGC
66 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTT-TCCATCTTTGATCTGC
*
6824578 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGAC
130 TCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGAC
*
6824643 AAGACTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCT
195 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCT
*
6824708 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
260 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCGCT
* *
6824760 ACTACTTCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTACTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAAGGAGACAAG
* * *
6824825 GCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCTATCTTTGATTTGCT
66 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCT
* * * *
6824890 CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTTA-AGGAGAC
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA-GAGAC
* ** *
6824954 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGACTGACAAGATTTGCCGTCTTTGATCT
195 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCT
* *
6825019 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACTCCGCT
260 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCGCT
* *
6825071 ACTACTGCTTAGGGAGATAAGATCTACAATTTTAAACCTACACCGCTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAAGGAGACAAG
6825136 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCT
6825201 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACA
131 CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACA
6825266 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTG
196 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTG
6825331 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTT
261 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTT
6825368 NNNNNNNNNN
Statistics
Matches: 564, Mismatches: 41, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
310 2 0.00
311 561 0.99
312 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (311 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCT
CCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTG
CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCGCT
Found at i:6824928 original size:132 final size:132
Alignment explanation
Indices: 6824758--6825073 Score: 443
Period size: 132 Copynumber: 2.4 Consensus size: 132
6824748 ACCTACTCCG
* *
6824758 CTACTACTTCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTACTGCTCAAGGAGACA
1 CTACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAGGAGACA
* * * * * * * *
6824823 AGGCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGATTTTCTATCTTTGATTTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
6824888 CT
131 CT
* * * *
6824890 CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTTAAGGAGACA
1 CTACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAGGAGACA
** *
6824955 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGACTGACAAGATTTGCCGTCTTTGATCTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
6825020 CT
131 CT
* * * *
6825022 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACTCCGCTACT
1 CTACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACT
6825074 ACTGCTTAGG
Statistics
Matches: 160, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
132 160 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
CTACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAAGGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
CT
Found at i:6825075 original size:179 final size:179
Alignment explanation
Indices: 6824890--6825249 Score: 558
Period size: 179 Copynumber: 2.0 Consensus size: 179
6824880 TTGATTTGCT
* * * *
6824890 CTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTTAAGGAGACA
1 CTACTACTACTTAGGGAGATAAGATCTACAATCATAAACCTACACCGCTGCTGCTCAAGGAGACA
** *
6824955 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGACTGACAAGATTTGCCGTCTTTGATCTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
* *
6825020 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACTCCG
131 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCG
* **
6825069 CTACTACTGCTTAGGGAGATAAGATCTACAATTTTAAACCTACACCGCTGCTGCTCAAGGAGACA
1 CTACTACTACTTAGGGAGATAAGATCTACAATCATAAACCTACACCGCTGCTGCTCAAGGAGACA
* * * * *
6825134 AGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
*
6825199 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
131 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCG
6825248 CT
1 CT
6825250 GCTGCTCAGA
Statistics
Matches: 163, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
179 163 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (179 bp):
CTACTACTACTTAGGGAGATAAGATCTACAATCATAAACCTACACCGCTGCTGCTCAAGGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCATCTTTGATCTG
CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCGACTCCG
Found at i:6825117 original size:47 final size:47
Alignment explanation
Indices: 6825024--6825117 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
6825014 GATCTGCTCC
*
6825024 ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACACCGCT
*
6825071 ACTACTGCTTAGGGAGATAAGATCTACAAT-TTTAAACCTACACCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTT-AACCGACACCGCT
6825118 GCTGCTCAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 3 0.07
47 41 0.93
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (47 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGACACCGCT
Found at i:6825216 original size:443 final size:441
Alignment explanation
Indices: 6824181--6825365 Score: 1507
Period size: 443 Copynumber: 2.7 Consensus size: 441
6824171 CTTTGATCTG
* * *
6824181 CTCC-ACTACTGCTTAGGGAGATAAGATCTATACTCTTCAACCTACTCCGCTGCTGCTCAGGGAG
1 CTCCGACTACTGCTTAGGGAGATAAGATCTATAATCTTAAACCTACTCCGCTGCTGCTCAAGGAG
* * * *
6824245 ACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGAT
66 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTTGAT
* *
6824310 CTGCTCCACTACTGCTTAAGGG-GATAAGATCTACAATCTTCAACGTACTCCGCTACTGCTCAGA
131 CTGCTCCACTACTACTT-AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGA
*
6824374 GAGACAAGACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTT
195 GAGACAAGACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTT
* * *
6824439 GATCTT-CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTC
260 GAT-TTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTC
* * * **
6824503 AAGGAGACAAGGCTTAATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTGGTC
324 AAGGAGACAAGACTTAATGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCGTC
*
6824568 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
389 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGA
* * * * ** * * * * **
6824621 CTCCG-CTGCTGCTCAGAGAGACAAGA-CT-TTGTGGCTTAAATCTGCTTCC-C-ACT-ATCTTG
1 CTCCGACTACTGCTTAGGGAGATAAGATCTATAAT--CTTAAACCTAC-TCCGCTGCTGCTCAAG
** **** ** * * *
6824680 GAAAGACAAGATTTGCCATCTTTGATCTGCTT--CACTACTGCTTAGG-GAGATAAGATCTACAA
63 G--AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTACCA
** * * * *
6824742 TCTTCAACCTACTCCGCTACTACTTCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCT
123 TCTTTGATCTGCT-C-C-ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* *
6824807 ACTGCTCA-AGGAGACAAGGCTTGGTGGCTTAAATCTGTTTCCCATTATCTTGGAAAGATAAGAT
185 ACTGCTCAGA-GAGACAAGACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGAT
* * *
6824871 TTTCTATCTTTGATTTGC-TCTACTACTACTTAGGGAGATAAGATCTACAATCATCAACCTACTC
249 TTGCCATCTTTGATTTGCTTC-ACTACTGCTTAGGGAGATAAGATCTACAATCATCAACCTACTC
* ** **
6824935 GGCTGCTGCTTAAGGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGACTGACAA
313 GGCTGCTGCTCAAGGAGACAAGACTTAATGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAA
*
6825000 GATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCGA
378 GATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGA
* * *
6825064 CTCCGCTACTACTGCTTAGGGAGATAAGATCTACAATTTTAAACCTACACCGCTGCTGCTCAAGG
1 CTCCG--ACTACTGCTTAGGGAGATAAGATCTATAATCTTAAACCTACTCCGCTGCTGCTCAAGG
* *
6825129 AGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTG
64 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTTG
*
6825194 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAG
129 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAG
* *
6825259 AGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTT
194 AGAGACAAGACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTT
*
6825324 TGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATC
259 TGATTTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATC
6825366 TTNNNNNNNN
Statistics
Matches: 617, Mismatches: 99, Indels: 55
0.80 0.13 0.07
Matches are distributed among these distances:
438 11 0.02
439 5 0.01
440 73 0.12
441 5 0.01
442 10 0.02
443 419 0.68
444 4 0.01
445 5 0.01
446 70 0.11
447 5 0.01
448 10 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (441 bp):
CTCCGACTACTGCTTAGGGAGATAAGATCTATAATCTTAAACCTACTCCGCTGCTGCTCAAGGAG
ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTTGAT
CTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAG
AGACAAGACTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTG
ATTTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCATCAACCTACTCGGCTGCTGCTCAA
GGAGACAAGACTTAATGGCTTAAATCTGCTTCCCACTATCTTAGAAAGACAAGATTTGCCGTCTT
TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCGA
Found at i:6825241 original size:132 final size:132
Alignment explanation
Indices: 6825071--6825367 Score: 497
Period size: 132 Copynumber: 2.2 Consensus size: 132
6825061 CGACTCCGCT
*
6825071 ACTACTGCTTAGGGAGATAAGATCTACAATTTTAAACCTACACCGCTGCTGCTCA-AGGAGACAA
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACACCGCTGCTGCTCAGA-GAGACAA
* * * *
6825135 GGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGC
65 GACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGC
6825200 TCC
130 TCC
* * *
6825203 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACACCGCTGCTGCTCAGAGAGACAAG
6825268 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
*
6825333 TC
131 CC
6825335 ACTACTGCTTAGGGAGATAAGATCTACAATCTT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTT
6825368 NNNNNNNNNN
Statistics
Matches: 154, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 153 0.99
133 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTAAACCTACACCGCTGCTGCTCAGAGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGATCTGCT
CC
Found at i:6828977 original size:132 final size:132
Alignment explanation
Indices: 6828740--6829375 Score: 993
Period size: 132 Copynumber: 4.8 Consensus size: 132
6828730 NNNNNNNNNN
* * * * *
6828740 GACAAGACTTGGTGGCTTAAATCTGCTTCTCACTATATTGAAAAGATAAGATATGCCATCTTTGA
1 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
* *
6828805 TCTTCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGG
66 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
6828870 GA
131 GA
* * * *
6828872 GACAAGGCTTGGTGGCTTAAATATGCTTCCCTCTATCTTGAAAAGATAAGATTTGCCGTCTTTGA
1 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
* * *
6828937 TCTGCTCCACTACTGCTTAGGCAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGA
66 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
6829002 GA
131 GA
* * *
6829004 GACAAGACTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTACGGTCTTTGA
1 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
* *
6829069 TCTGCTTCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGG
66 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
6829134 GA
131 GA
* * * *
6829136 GACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTACGGTCTTTGA
1 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
*
6829201 TCTGCTTCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
66 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
6829266 GA
131 GA
* * * * *
6829268 GACAAGACTTTGTGGCTTAAATATGATTCCCACTATCTTGGAAAGACAAGATTTGCCATCTTTGA
1 GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
* *
6829333 TCTGCTTCACTATTGCTTAGGGAGATAAGAACTACAATCTTCA
66 TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
6829376 NNNNNNNNNN
Statistics
Matches: 466, Mismatches: 38, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 466 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
GACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
TCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGA
GA
Found at i:6829097 original size:44 final size:44
Alignment explanation
Indices: 6828915--6829231 Score: 128
Period size: 44 Copynumber: 7.2 Consensus size: 44
6828905 TATCTTGAAA
* * * * * * *
6828915 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGC
1 AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
* ** * * * * * * *
6828959 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAG
1 AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
* * * * *
6829003 AGACAAGACTT--GGTGGCTTAAATCTACTTC-CCACTATCTT-GGAA
1 AGATAAGATTTACGGT--CTTTAATCTACTTCACTACTA-CTTAGG-G
* *
6829047 AGATAAGATTTACGGTCTTTGATCTGCTTCACTACTACTTAGGG
1 AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
* ** * * * * * * *
6829091 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
* ** * * *
6829135 AGACAAGGCTT--GGTGGCTTAAATCTACTTC-CCACTATCTT-GGAA
1 AGATAAGATTTACGGT--CTTTAATCTACTTCACTACTA-CTTAGG-G
* *
6829179 AGATAAGATTTACGGTCTTTGATCTGCTTCACTACTACTTAGGG
1 AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
6829223 AGATAAGAT
1 AGATAAGAT
6829232 CTACAATCTT
Statistics
Matches: 191, Mismatches: 66, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
42 2 0.01
43 10 0.05
44 159 0.83
45 14 0.07
46 6 0.03
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTACGGTCTTTAATCTACTTCACTACTACTTAGGG
Found at i:6831045 original size:51 final size:51
Alignment explanation
Indices: 6830882--6831066 Score: 205
Period size: 51 Copynumber: 3.6 Consensus size: 51
6830872 TAAAAGTGAT
* * *
6830882 GGTCATATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGA-AATAATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATAGTAATA
* * *** * * *
6830932 GGTCGCATGTGTAGTACTATGTGTAGGCTACTATACGTACCGGATAGT-TTC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATAGTAATA
* * *
6830983 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGTAAT-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATAGTAATA
6831034 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
6831067 TGTGAACCGA
Statistics
Matches: 109, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
50 33 0.30
51 73 0.67
52 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATAGTAATA
Found at i:6831070 original size:26 final size:26
Alignment explanation
Indices: 6830990--6831070 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
6830980 TTCGATCACG
6830990 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
6831016 CGTGTA-T-CAGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
6831041 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
6831067 TGTG
1 TGTG
6831071 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:6834195 original size:14 final size:14
Alignment explanation
Indices: 6834160--6834188 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6834150 TGACTTTCTC
6834160 TAGTTTGTAGTGTT
1 TAGTTTGTAGTGTT
6834174 TAGTTTGTAGTGTT
1 TAGTTTGTAGTGTT
6834188 T
1 T
6834189 GCTTTGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (14 bp):
TAGTTTGTAGTGTT
Found at i:6836970 original size:24 final size:24
Alignment explanation
Indices: 6836937--6836984 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
6836927 AAATGATCAA
*
6836937 ATTGGGTTTTAAA-TATTAATGGGT
1 ATTGGATTTTAAACT-TTAATGGGT
6836961 ATTGGATTTTAAACTTTAATGGGT
1 ATTGGATTTTAAACTTTAATGGGT
6836985 TTAGACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.46
Consensus pattern (24 bp):
ATTGGATTTTAAACTTTAATGGGT
Found at i:6845286 original size:45 final size:45
Alignment explanation
Indices: 6845222--6845315 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
6845212 AACAGATACT
* *
6845222 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
6845267 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
6845312 CGGT
1 CGGT
6845316 TCACATAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:6845379 original size:51 final size:50
Alignment explanation
Indices: 6845321--6845484 Score: 150
Period size: 51 Copynumber: 3.2 Consensus size: 50
6845311 TCGGTTCACA
6845321 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCCGATACACG
* * * * * * * * *
6845372 TAGTAGCCTGCATATAGTACTACAGACGTGATCGAAACTATCTGATACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATCCGATACACG
** * * * * *
6845423 TAGTAAACTACACATAGTACTACACATGCGA-CATATCATTTCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCCGATACACG
6845473 TAGTAGCCTGCA
1 TAGTAGCCTGCA
6845485 TATACTTTTA
Statistics
Matches: 83, Mismatches: 28, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
49 3 0.04
50 15 0.18
51 63 0.76
52 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCCGATACACG
Found at i:6846986 original size:14 final size:15
Alignment explanation
Indices: 6846967--6846999 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6846957 GATTAGTATT
*
6846967 AATTAAG-TGAAATA
1 AATTAAGCTCAAATA
6846981 AATTAAGCTCAAATA
1 AATTAAGCTCAAATA
6846996 AATT
1 AATT
6847000 TTAATTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (15 bp):
AATTAAGCTCAAATA
Found at i:6854512 original size:29 final size:30
Alignment explanation
Indices: 6854478--6854702 Score: 271
Period size: 29 Copynumber: 7.7 Consensus size: 30
6854468 TTGTATGTGT
*
6854478 AATGGATGCCTTTGTGGCTA-CCTCTGTTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* *
6854507 AATGGATGCCTTTTTGGCTATTCTTTGTTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* *
6854537 AATGGACGCC-TTGTGGCTATTCTCTATTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* *
6854566 AATGGATG-CTTTGAGGCTATTCTATGTTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* * *
6854595 AATGGGTGCCTTTGGGGCTA-TCTTTGTTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
*
6854624 AATGGAAGCCTTTGTGGCTATTCTCTGTTA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* * *
6854654 AATGGATGCCCTTGTAGCTATTCTCT-ATA
1 AATGGATGCCTTTGTGGCTATTCTCTGTTA
* *
6854683 AAAGGATGCCCTTGTGGCTA
1 AATGGATGCCTTTGTGGCTA
6854703 CCTTTGTGAA
Statistics
Matches: 168, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
28 1 0.01
29 110 0.65
30 57 0.34
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.40
Consensus pattern (30 bp):
AATGGATGCCTTTGTGGCTATTCTCTGTTA
Found at i:6854567 original size:59 final size:59
Alignment explanation
Indices: 6854478--6854702 Score: 267
Period size: 59 Copynumber: 3.8 Consensus size: 59
6854468 TTGTATGTGT
* * * *
6854478 AATGGATGCCTTTGTGGCTACCTCTGTTAAATGGATGCCTTTTTGGCTATTCTTTGTTA
1 AATGGATGCCTTTGTGGCTATCTCTATTAAATGGATGCCTTTGTGGCTATTCTATGTTA
* *
6854537 AATGGACGCC-TTGTGGCTATTCTCTATTAAATGGATG-CTTTGAGGCTATTCTATGTTA
1 AATGGATGCCTTTGTGGCTA-TCTCTATTAAATGGATGCCTTTGTGGCTATTCTATGTTA
* * * * * *
6854595 AATGGGTGCCTTTGGGGCTATCTTTGTTAAATGGAAGCCTTTGTGGCTATTCTCTGTTA
1 AATGGATGCCTTTGTGGCTATCTCTATTAAATGGATGCCTTTGTGGCTATTCTATGTTA
* * * *
6854654 AATGGATGCCCTTGTAGCTATTCTCTA-TAAAAGGATGCCCTTGTGGCTA
1 AATGGATGCCTTTGTGGCTA-TCTCTATTAAATGGATGCCTTTGTGGCTA
6854703 CCTTTGTGAA
Statistics
Matches: 139, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
58 49 0.35
59 86 0.62
60 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.40
Consensus pattern (59 bp):
AATGGATGCCTTTGTGGCTATCTCTATTAAATGGATGCCTTTGTGGCTATTCTATGTTA
Found at i:6854702 original size:88 final size:88
Alignment explanation
Indices: 6854478--6854709 Score: 292
Period size: 88 Copynumber: 2.6 Consensus size: 88
6854468 TTGTATGTGT
* * *
6854478 AATGGATGCCTTTGTGGCTA-CCTCTGTTAAATGGATGCCTTTTTGGCTATTCTTTGTTAAATGG
1 AATGGATGCCTTTGTAGCTATTCTCTGTTAAATGGATGCCTTTGTGGCTA-TCTTTGTTAAATGG
*
6854542 ACGCCTTGTGGCTATTCTCTATTA
65 AAGCCTTGTGGCTATTCTCTATTA
* * *
6854566 AATGGATG-CTTTG-AGGCTATTCTATGTTAAATGGGTGCCTTTGGGGCTATCTTTGTTAAATGG
1 AATGGATGCCTTTGTA-GCTATTCTCTGTTAAATGGATGCCTTTGTGGCTATCTTTGTTAAATGG
*
6854629 AAGCCTTTGTGGCTATTCTCTGTTA
65 AAGCC-TTGTGGCTATTCTCTATTA
* * * * *
6854654 AATGGATGCCCTTGTAGCTATTCTCT-ATAAAAGGATGCCCTTGTGGCTACCTTTGT
1 AATGGATGCCTTTGTAGCTATTCTCTGTTAAATGGATGCCTTTGTGGCTATCTTTGT
6854710 GAATGGATGC
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
87 27 0.22
88 82 0.67
89 13 0.11
90 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.40
Consensus pattern (88 bp):
AATGGATGCCTTTGTAGCTATTCTCTGTTAAATGGATGCCTTTGTGGCTATCTTTGTTAAATGGA
AGCCTTGTGGCTATTCTCTATTA
Found at i:6856892 original size:30 final size:30
Alignment explanation
Indices: 6856856--6857166 Score: 291
Period size: 30 Copynumber: 10.4 Consensus size: 30
6856846 ATTCTACAAA
6856856 AATAGCCACAAAGGCTTCCATTTAACAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* *
6856886 AATAGCCACAAAGGCTTCCATCTAACAAAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * * *
6856916 AATAGACACAAAGACTTCCATCTAATAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * ** *
6856946 AACAACCAGGAAGGCTTCCATTTAATAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * * * * *
6856976 AACAACCAGAAAGGCTTCTATTTAGCGGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* *
6857006 AATAGCCACAAAGGCTTCCATCTAACAAAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * * *
6857036 AATAGACACAAAGACTTCCATCTAATAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * ** * *
6857066 AACAACCAGGAAGGCTTCTATTTAATAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * * *
6857096 AACAACCAGAAAGGCTTCCATTTAACGGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
* * *
6857126 AATAGCCAAAAAGGTTTCCATTCAACAGAG
1 AATAGCCACAAAGGCTTCCATTTAACAGAG
6857156 -ATAGCCACAAA
1 AATAGCCACAAA
6857167 AGCTCACATT
Statistics
Matches: 232, Mismatches: 49, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
29 10 0.04
30 222 0.96
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (30 bp):
AATAGCCACAAAGGCTTCCATTTAACAGAG
Found at i:6856993 original size:120 final size:120
Alignment explanation
Indices: 6856865--6857146 Score: 510
Period size: 120 Copynumber: 2.4 Consensus size: 120
6856855 AAATAGCCAC
*
6856865 AAAGGCTTCCATTTAACAGAGAATAGCCACAAAGGCTTCCATCTAACAAAGAATAGACACAAAGA
1 AAAGGCTTCCATTTAACGGAGAATAGCCACAAAGGCTTCCATCTAACAAAGAATAGACACAAAGA
6856930 CTTCCATCTAATAGAGAACAACCAGGAAGGCTTCCATTTAATAGAGAACAACCAG
66 CTTCCATCTAATAGAGAACAACCAGGAAGGCTTCCATTTAATAGAGAACAACCAG
* *
6856985 AAAGGCTTCTATTTAGCGGAGAATAGCCACAAAGGCTTCCATCTAACAAAGAATAGACACAAAGA
1 AAAGGCTTCCATTTAACGGAGAATAGCCACAAAGGCTTCCATCTAACAAAGAATAGACACAAAGA
*
6857050 CTTCCATCTAATAGAGAACAACCAGGAAGGCTTCTATTTAATAGAGAACAACCAG
66 CTTCCATCTAATAGAGAACAACCAGGAAGGCTTCCATTTAATAGAGAACAACCAG
* *
6857105 AAAGGCTTCCATTTAACGGAGAATAGCCAAAAAGGTTTCCAT
1 AAAGGCTTCCATTTAACGGAGAATAGCCACAAAGGCTTCCAT
6857147 TCAACAGAGA
Statistics
Matches: 154, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 154 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (120 bp):
AAAGGCTTCCATTTAACGGAGAATAGCCACAAAGGCTTCCATCTAACAAAGAATAGACACAAAGA
CTTCCATCTAATAGAGAACAACCAGGAAGGCTTCCATTTAATAGAGAACAACCAG
Found at i:6864054 original size:59 final size:60
Alignment explanation
Indices: 6863983--6864099 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 60
6863973 ATCACTTTAA
* * * *
6863983 TATTAAATTAATATAATATTTATC-AAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
6864042 TATTAAAATAATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTATC-T-AAGATAAACATTAAATTAAATTTAATATTAA
6864100 GATAATTACT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 21 0.43
62 28 0.57
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (60 bp):
TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:6885736 original size:49 final size:49
Alignment explanation
Indices: 6885681--6885781 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 49
6885671 AATATCTTAC
* **
6885681 AACAAAAGTAATGGGACTAAAAATGCAGATAAATCTAAGTTACAGTGAT
1 AACAAAAGTAATGGGACTAAAAATGCAAATAAATCTAAACTACAGTGAT
* *
6885730 AACAAAAGTAATGGGACTAAAAGTGCAAATAAATCTAAACTATAGTGAT
1 AACAAAAGTAATGGGACTAAAAATGCAAATAAATCTAAACTACAGTGAT
6885779 AAC
1 AAC
6885782 TAACTTAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (49 bp):
AACAAAAGTAATGGGACTAAAAATGCAAATAAATCTAAACTACAGTGAT
Found at i:6891152 original size:50 final size:50
Alignment explanation
Indices: 6891045--6891237 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 50
6891035 GGTAAAGAGA
* *
6891045 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCA-C--CGA-G--ATGAAAGG
* *
6891101 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGAAAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGAGATGAAAGG
* * * * *
6891151 TCTCC-CGTAAGACCATGTTTGGGACATGGCA-TGAGCACCGATATGAGAA-C
1 TC-CCATGTAAGACCATATCTGGGACATGGCATTG-GCACCGAGATGA-AAGG
* *
6891201 TCCCGTGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCA
6891238 GTACAAGAAA
Statistics
Matches: 119, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
49 4 0.03
50 70 0.59
51 6 0.05
52 1 0.01
53 2 0.02
55 1 0.01
56 35 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGAGATGAAAGG
Found at i:6899455 original size:12 final size:12
Alignment explanation
Indices: 6899428--6899467 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
6899418 TTCTTTAATG
6899428 TTATAGTAATATT
1 TTATAGTAA-ATT
6899441 TTATAGTAAATT
1 TTATAGTAAATT
*
6899453 TTAGTAATAAATT
1 TTA-TAGTAAATT
6899466 TT
1 TT
6899468 TTGATTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 6 0.24
13 19 0.76
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (12 bp):
TTATAGTAAATT
Found at i:6899927 original size:21 final size:22
Alignment explanation
Indices: 6899886--6899928 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
6899876 TAAATTAATT
* *
6899886 CATTAAAATTGTAAAATATAAC
1 CATTAAAAATGTAAAACATAAC
6899908 CATTAAAAAT-TAAAACATAAC
1 CATTAAAAATGTAAAACATAAC
6899929 TAACAAGCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (22 bp):
CATTAAAAATGTAAAACATAAC
Found at i:6902452 original size:19 final size:19
Alignment explanation
Indices: 6902428--6902467 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6902418 AAAATTCTAA
6902428 AATTTAAAATAAAAATATT
1 AATTTAAAATAAAAATATT
* * *
6902447 AATTTAACATTAAACTATT
1 AATTTAAAATAAAAATATT
6902466 AA
1 AA
6902468 AAAAGACATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTTAAAATAAAAATATT
Found at i:6904142 original size:16 final size:18
Alignment explanation
Indices: 6904107--6904144 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6904097 ATTTTTATTT
*
6904107 AAATAAAATATAGTAGTA
1 AAATAAAATATAGAAGTA
6904125 AAATAAAATA-A-AAGTA
1 AAATAAAATATAGAAGTA
6904141 AAAT
1 AAAT
6904145 TCATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAGAAGTA
Found at i:6904698 original size:9 final size:10
Alignment explanation
Indices: 6904679--6904704 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
6904669 TTTTATATGC
6904679 TTTTAATTTT
1 TTTTAATTTT
6904689 TTTTAATTTT
1 TTTTAATTTT
6904699 TTTTAA
1 TTTTAA
6904705 ATATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTAATTTT
Found at i:6906403 original size:16 final size:16
Alignment explanation
Indices: 6906361--6906407 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
6906351 ATACTCACCC
6906361 TTTATTGAAT-TAATAT
1 TTTATTGAATATAAT-T
*
6906377 TTTAATGAATATAATT
1 TTTATTGAATATAATT
*
6906393 TTTATTTAATA-AATT
1 TTTATTGAATATAATT
6906408 ATGATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 4 0.15
16 19 0.70
17 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (16 bp):
TTTATTGAATATAATT
Found at i:6907371 original size:17 final size:18
Alignment explanation
Indices: 6907332--6907376 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
6907322 GGGTTACAAT
6907332 GAGATGAAAGGTTCAAGG
1 GAGATGAAAGGTTCAAGG
* *
6907350 AAGATGGAAGGTT-AAGG
1 GAGATGAAAGGTTCAAGG
6907367 GAGATGAAAG
1 GAGATGAAAG
6907377 ATGAAAGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.42, C:0.02, G:0.40, T:0.16
Consensus pattern (18 bp):
GAGATGAAAGGTTCAAGG
Found at i:6908353 original size:45 final size:44
Alignment explanation
Indices: 6908135--6908379 Score: 251
Period size: 45 Copynumber: 5.5 Consensus size: 44
6908125 TTGGAAATAT
* * * ** * **
6908135 AGGTGGATGCTATGTGCTGATTCCACTCGATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCAC-CGGTACCATTGAGTATAA
* * * *
6908180 ATGTGGTTGCTATGTGTTGATTTCACCGGATACCAATG-GTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACCGG-TACCATTGAG-TATAA
6908225 AGGTGGTTGCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCA-CCGGTACCATTGAGTATAA
*
6908270 AGGTGGTTTCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCA-CCGGTACCATTGAGTATAA
* * *
6908315 AGGTGGTTGCTATGAGCTGATTTCACCGAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCG-GTACCATTGAGTATAA
* * *
6908360 GGGTGG-TGTTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
6908380 CCACCGTGTA
Statistics
Matches: 172, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
44 16 0.09
45 151 0.88
46 5 0.03
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
AGGTGGTTGCTATGTGCTGATTTCACCGGTACCATTGAGTATAA
Found at i:6914933 original size:737 final size:738
Alignment explanation
Indices: 6913513--6915545 Score: 3204
Period size: 737 Copynumber: 2.8 Consensus size: 738
6913503 TGTAACAAAC
* *
6913513 AAAATTTGTCTCTACTTTCTTATTGTTATCCTTCAATGATTGTTGATATAGTTATACAAGATGCT
1 AAAATTTGTCTCTATTTTCTTCTT-TTATCCTTCAATGATTGTTGATATAGTTATACAAGATGCT
6913578 TTGGTGTACGACAAGTACGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACT
65 TTGGTGTACGACAAGTACGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACT
*
6913643 TTCCCAGTTGTATTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGAA
130 TTCCTAGTTGTATTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGAA
* * * *
6913708 ATGACCACCTCGCTGACGTCCACGTCCACGTCTTCGACCTTGACTGTGACCACGACCACGACCAT
195 ATGACCACCTCGCT----T--ACGTCCACGTCCTCGACCTTCACCGTGACCATGACCACGACCAT
* * *
6913773 GTCCTCAACCACAACTACTAATGTGGCCTTTATCTGTTTCACTATATGATGTCACATTTGCTTTA
254 GTCCTCAACCACAACTACTAGTGTGGCCTTTATCTGTTTCACTATATGATGTCACATTCGCTTCA
* * *
6913838 GAGATTGGAGTAGAGTCAGTTGGACATGACTCAAGATTTTTCATTAACAATTTATTATTTTGCTT
319 GAGATTGGAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAACAGTTCATTATTTTGCTT
* *
6913903 AGCTAGAAGAAGACAAGATATTAATTCAGAATATGTCTTAAAACCTTTTTCACGATATTGTGTCT
384 AGCCAGAAGAAGACAAGATATTAATTCAGAATATTTCTTAAAACCTTTTTCACGATATTGTGTCT
* * *
6913968 ACAAGACAACATTATTTATGTGAAATAT-AGAGTATGTTTTTTCTAACATATCTTTATCAGTTAT
449 ACAAGACAACATTATTTACGTGAAATGTGA-AGTATGTTTTTTCTAACATATCTTCATCAGTTAT
6914032 GTTCTCTCCACATAATTTCAATTGGGAAGTGATTCTAAATATTTTAAAACATAATATAATAATCA
513 GTTCTCTCCACATAATTTCAATTGGGAAGTGATTCTAAATATTTTAAAACATAATATAATAATCA
* * *
6914097 TGTTGTTAAAAACATAACAAACTTGCATAACATTTATTCTTTAAAACTATAATAATAAAATTAAA
578 TGTTGTTAAAAACATAACAAAATTGCATAAAATTTACTCTTTAAAACTATAATAATAAAATTAAA
* * **
6914162 AGATCAATTACTCCCTTTAGGGGTGGTGAAGAAATTGACAACTTTCAAATGAGTAGTACCAATGA
643 AGATCAATTACTCCCTTTAGGGGTGGTGAAGAAATTAACAACTTCCAAATGAGTAGTACCAACAA
*
6914227 TGCCATAATCATCTTTATCATTCT-CAAAAA
708 TGCCATAATCACCTTTATCATTCTCCAAAAA
* *
6914257 AAAATTTGTCTTTATTTTCTTCTTTAAATCCTTCAATGATTGTTGATATAGTTATACAAGATGCT
1 AAAATTTGTCTCTATTTTCTTCTTT-TATCCTTCAATGATTGTTGATATAGTTATACAAGATGCT
* *
6914322 TTGGTGTACGACAACTACGGGATCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACT
65 TTGGTGTACGACAAGTACGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACT
* *
6914387 TTCCTAGTTGTA-TTTTATCATTCTTTCCATCCTTATGATCCCAATACTAGTGGGTATTCTTGAA
130 TTCCTAGTTGTATTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGAA
* *
6914451 ATGACCACCTCGCTTACGTCTACGTCCTCGACCTTCACCGTGACCATGACCGCGACCATGTCCTC
195 ATGACCACCTCGCTTACGTCCACGTCCTCGACCTTCACCGTGACCATGACCACGACCATGTCCTC
* * * * *
6914516 GACCACAACTACTAGTGTGGCCTTTATCTTTTTCATTACATGGTGTCACATTCGCTTCAGAGATT
260 AACCACAACTACTAGTGTGGCCTTTATCTGTTTCACTATATGATGTCACATTCGCTTCAGAGATT
* * *
6914581 GGAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAATAGCTCATTATTTTGCTTGGCCAG
325 GGAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAACAGTTCATTATTTTGCTTAGCCAG
* * *
6914646 AAGAAGACAATATATTAATTCAGAATATTTCTTAAAACCTTTGTCACGATATTGTGTCTGCAAGA
390 AAGAAGACAAGATATTAATTCAGAATATTTCTTAAAACCTTTTTCACGATATTGTGTCTACAAGA
*
6914711 CAACATTATTTACGTGAAATGTGAAGTATGTTTTTTCTAACATATCCTCATCAGTTATGTTCTCT
455 CAACATTATTTACGTGAAATGTGAAGTATGTTTTTTCTAACATATCTTCATCAGTTATGTTCTCT
*
6914776 CCACATAATTTCAATTGGGAAGTGATTTTAAATATTTTAAAACATAATATAATAATCATGTTGTT
520 CCACATAATTTCAATTGGGAAGTGATTCTAAATATTTTAAAACATAATATAATAATCATGTTGTT
* *
6914841 AAAAATATAACAAAATTGTATAAAATTTACTCTTTAAAACTATAATAATAAAATTAAAAGATCAA
585 AAAAACATAACAAAATTGCATAAAATTTACTCTTTAAAACTATAATAATAAAATTAAAAGATCAA
* * *
6914906 TTATTCCCTTTAGGGGTGGTGAAGAAATTAACAGCTTCCAAATGAGTTGTACCAACAATGCCATA
650 TTACTCCCTTTAGGGGTGGTGAAGAAATTAACAACTTCCAAATGAGTAGTACCAACAATGCCATA
* * * *
6914971 GTCACCTTTGTCATTCTCCCAAAC
715 ATCACCTTTATCATTCTCCAAAAA
* * *
6914995 AAAATTCGTCTCTATTTTCTTCTTTTTATCCTTCAATCATTGTTGATATAGCTATACAAGATGCT
1 AAAATTTGTCTCTATTTTCTTC-TTTTATCCTTCAATGATTGTTGATATAGTTATACAAGATGCT
* * * * *
6915060 TTGATGTATGAAAAGTATGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTTCACT
65 TTGGTGTACGACAAGTACGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACT
*
6915125 TTTCTAGTTGTATTTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGA
130 TTCCTAGTTGTA-TTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGA
6915190 AATGACCACCTCGCTTACGTCCACGTCCTCGACC-TCGA-C-TG----TGACCACGACCATGTCC
194 AATGACCACCTCGCTTACGTCCACGTCCTCGACCTTC-ACCGTGACCATGACCACGACCATGTCC
* *
6915248 TCAACCACGACTACTAGTGTGGCCTTTATCTGTTTCAGTATATGATGTCACATTCGCTTCAGAGA
258 TCAACCACAACTACTAGTGTGGCCTTTATCTGTTTCACTATATGATGTCACATTCGCTTCAGAGA
* *
6915313 TTGGAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAACAGTTCATTATTTTGCTCATCC
323 TTGGAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAACAGTTCATTATTTTGCTTAGCC
* *
6915378 AGAAGAAGACAAGATATTAATTCAAAATATTTCTTAAAACCTTTTTCACGATATTGTGTCTACAG
388 AGAAGAAGACAAGATATTAATTCAGAATATTTCTTAAAACCTTTTTCACGATATTGTGTCTACAA
* *
6915443 GACAACATTATTTACGTGAAATGTGGAGTATGTTTTTTTCTAACATATCTTCATCAGTTATGTTA
453 GACAACATTATTTACGTGAAATGTGAAGTATG-TTTTTTCTAACATATCTTCATCAGTTATGTTC
* *
6915508 TCTCGACATAATTTCAATTGGGAAATGATTCTAAATAT
517 TCTCCACATAATTTCAATTGGGAAGTGATTCTAAATAT
6915546 AGTCGAGTTA
Statistics
Matches: 1186, Mismatches: 95, Indels: 25
0.91 0.07 0.02
Matches are distributed among these distances:
734 226 0.19
735 65 0.05
737 475 0.40
738 132 0.11
739 7 0.01
740 83 0.07
743 65 0.05
744 133 0.11
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (738 bp):
AAAATTTGTCTCTATTTTCTTCTTTTATCCTTCAATGATTGTTGATATAGTTATACAAGATGCTT
TGGTGTACGACAAGTACGGGACCAATGGTTTTTACCTTCACAACGATAACACAAACTTTCCACTT
TCCTAGTTGTATTTTTATCATTCTTTCCATCCTTATGATCCCAGTTCTAGTGGGTATTCTTGAAA
TGACCACCTCGCTTACGTCCACGTCCTCGACCTTCACCGTGACCATGACCACGACCATGTCCTCA
ACCACAACTACTAGTGTGGCCTTTATCTGTTTCACTATATGATGTCACATTCGCTTCAGAGATTG
GAGTAGAGTCAGTTGGACATGACTCATGATTTTTCATTAACAGTTCATTATTTTGCTTAGCCAGA
AGAAGACAAGATATTAATTCAGAATATTTCTTAAAACCTTTTTCACGATATTGTGTCTACAAGAC
AACATTATTTACGTGAAATGTGAAGTATGTTTTTTCTAACATATCTTCATCAGTTATGTTCTCTC
CACATAATTTCAATTGGGAAGTGATTCTAAATATTTTAAAACATAATATAATAATCATGTTGTTA
AAAACATAACAAAATTGCATAAAATTTACTCTTTAAAACTATAATAATAAAATTAAAAGATCAAT
TACTCCCTTTAGGGGTGGTGAAGAAATTAACAACTTCCAAATGAGTAGTACCAACAATGCCATAA
TCACCTTTATCATTCTCCAAAAA
Found at i:6916450 original size:24 final size:24
Alignment explanation
Indices: 6916423--6916496 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
6916413 GTTGAAATGT
6916423 TTAAGGAAGATGAAAGGTTAAAGG
1 TTAAGGAAGATGAAAGGTTAAAGG
* * * **
6916447 TTAAAGAAAATGAAAGATGGAAGG
1 TTAAGGAAGATGAAAGGTTAAAGG
* *
6916471 TCAAGGGAGATGAAA-GTTGAAAGG
1 TTAAGGAAGATGAAAGGTT-AAAGG
6916495 TT
1 TT
6916497 GAACATCCAT
Statistics
Matches: 36, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
23 1 0.03
24 35 0.97
ACGTcount: A:0.46, C:0.01, G:0.32, T:0.20
Consensus pattern (24 bp):
TTAAGGAAGATGAAAGGTTAAAGG
Found at i:6920113 original size:11 final size:11
Alignment explanation
Indices: 6920097--6920122 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6920087 TAGACTTGTA
6920097 ATCCAACTTGC
1 ATCCAACTTGC
6920108 ATCCAACTTGC
1 ATCCAACTTGC
6920119 ATCC
1 ATCC
6920123 GAGTAACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.08, T:0.27
Consensus pattern (11 bp):
ATCCAACTTGC
Found at i:6922107 original size:53 final size:53
Alignment explanation
Indices: 6922022--6922130 Score: 191
Period size: 53 Copynumber: 2.1 Consensus size: 53
6922012 AGTCGTCTAT
*
6922022 AAAAGTGATAAAATATCATTTTCCACCTCTTGTTAGTGTTCTATTTAATTCAC
1 AAAAGTGATAAAATATCATTTTCCACCTCTTGTTAGTGTTCCATTTAATTCAC
* *
6922075 AAAATTGATAAAATATCGTTTTCCACCTCTTGTTAGTGTTCCATTTAATTCAC
1 AAAAGTGATAAAATATCATTTTCCACCTCTTGTTAGTGTTCCATTTAATTCAC
6922128 AAA
1 AAA
6922131 CATTCGAATG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (53 bp):
AAAAGTGATAAAATATCATTTTCCACCTCTTGTTAGTGTTCCATTTAATTCAC
Found at i:6924940 original size:113 final size:113
Alignment explanation
Indices: 6924742--6924964 Score: 410
Period size: 113 Copynumber: 2.0 Consensus size: 113
6924732 AAGTCACAGG
6924742 ATTTGCCAGAATAAAGTTCTAGCCCCGTGACATTAGTAGGTTCTAAATGCATTAGAATGATATAA
1 ATTTGCCAGAATAAAGTTCTAGCCCCGTGACATTAGTAGGTTCTAAATGCATTAGAATGATATAA
6924807 GTGCATTACCACATTGTTTCAGCTCCAAAAAAGCTTAGTACTATGACA
66 GTGCATTACCACATTGTTTCAGCTCCAAAAAAGCTTAGTACTATGACA
*
6924855 ATTTGCCAGACTAAAGTTCTAGCCCCGTGACATTAGTAGGTTCTAAATGCATTAGAATGATATAA
1 ATTTGCCAGAATAAAGTTCTAGCCCCGTGACATTAGTAGGTTCTAAATGCATTAGAATGATATAA
* * *
6924920 GTGCATTACCATATTGTTTCAGTTCCAAACAAGCTTAGTACTATG
66 GTGCATTACCACATTGTTTCAGCTCCAAAAAAGCTTAGTACTATG
6924965 TTGAAATCAT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 106 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (113 bp):
ATTTGCCAGAATAAAGTTCTAGCCCCGTGACATTAGTAGGTTCTAAATGCATTAGAATGATATAA
GTGCATTACCACATTGTTTCAGCTCCAAAAAAGCTTAGTACTATGACA
Found at i:6925213 original size:87 final size:87
Alignment explanation
Indices: 6925055--6925293 Score: 282
Period size: 87 Copynumber: 2.7 Consensus size: 87
6925045 TATATCATAT
* * * *
6925055 TATATATAAATAACTTTAAATTATAAGACCTCTCTTATGAATTTCTGCAAATGAAGAAACTCTAA
1 TATATAAAAATAACTTTAAACTATAAGACCTCTCTCATGAATTTCTTCAAATGAAGAAACTCTAA
*
6925120 AGAGCTCATAAAAATAGTGAGG
66 AAAGCTCATAAAAATAGTGAGG
* * * * * * *
6925142 TGTATAAAAATAACTTCAAACTATAAGCCCTCACTCATTAATTTCTTTAAATGAAAAAACTCTAA
1 TATATAAAAATAACTTTAAACTATAAGACCTCTCTCATGAATTTCTTCAAATGAAGAAACTCTAA
* ** *
6925207 AAAGCTCCTGCAAATAGTGTGG
66 AAAGCTCATAAAAATAGTGAGG
** * *
6925229 TATATAAAAATATTTTTAAACTATAAGTCCTCTCTCATGAACTTT-TTCAATTGAAGAAACTCTA
1 TATATAAAAATAACTTTAAACTATAAGACCTCTCTCATGAA-TTTCTTCAAATGAAGAAACTCTA
6925293 A
65 A
6925294 GGAGATTACA
Statistics
Matches: 125, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
87 122 0.98
88 3 0.02
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (87 bp):
TATATAAAAATAACTTTAAACTATAAGACCTCTCTCATGAATTTCTTCAAATGAAGAAACTCTAA
AAAGCTCATAAAAATAGTGAGG
Found at i:6933048 original size:99 final size:99
Alignment explanation
Indices: 6932877--6933069 Score: 332
Period size: 99 Copynumber: 1.9 Consensus size: 99
6932867 GTGCAAGGCC
* * *
6932877 GTGTCACATGGCCCTGTGTCACATAGGGCTAAGACACACACCCTTATCTTAGGCCATGTGGATAA
1 GTGTCACATGGCCCTGTGTCACACACGGCTAAGACACACACCCGTATCTTAGGCCATGTGGATAA
6932942 GAAATAGGTCAAATTCAAGCCATTTCTTTCGACT
66 GAAATAGGTCAAATTCAAGCCATTTCTTTCGACT
* * *
6932976 GTGTCTCATGGCCCTGTGTCACACACGGCTAAGACACACACCCGTGTCTTAGGCCGTGTGGATAA
1 GTGTCACATGGCCCTGTGTCACACACGGCTAAGACACACACCCGTATCTTAGGCCATGTGGATAA
6933041 GAAATAGGTCAAATTCAAGCCATTTCTTT
66 GAAATAGGTCAAATTCAAGCCATTTCTTT
6933070 TCAACCAATT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (99 bp):
GTGTCACATGGCCCTGTGTCACACACGGCTAAGACACACACCCGTATCTTAGGCCATGTGGATAA
GAAATAGGTCAAATTCAAGCCATTTCTTTCGACT
Found at i:6959974 original size:49 final size:50
Alignment explanation
Indices: 6959914--6960018 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 50
6959904 AATCTTATAC
* * * *
6959914 ATAACATATAGAAAGCATT-AAACACGCTATATTCTTTCCAAAAAGAATT
1 ATAACATATAGAAAGCATTAAAAAACACTATATTCTTCCCAAAAACAATT
* *
6959963 ATAACATATAGAAAGTATTAAAAAAACATTATATTCTTCCCAAAAACAATT
1 ATAACATATAGAAAGCATT-AAAAAACACTATATTCTTCCCAAAAACAATT
6960014 ATAAC
1 ATAAC
6960019 TACCATGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
49 18 0.38
51 30 0.62
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (50 bp):
ATAACATATAGAAAGCATTAAAAAACACTATATTCTTCCCAAAAACAATT
Found at i:6962487 original size:9 final size:9
Alignment explanation
Indices: 6962473--6962514 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
6962463 TTTGGTTAAA
*
6962473 AATTAACAG
1 AATTAACCG
6962482 AATTAACCG
1 AATTAACCG
*
6962491 AATTACCCG
1 AATTAACCG
6962500 AATTAACCG
1 AATTAACCG
*
6962509 GATTAA
1 AATTAA
6962515 TTGAATTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:6962664 original size:18 final size:18
Alignment explanation
Indices: 6962624--6962667 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6962614 AATTTTTATG
**
6962624 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
6962642 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
6962660 CTTGGGTT
1 ATTGGGTT
6962668 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:6968809 original size:6 final size:6
Alignment explanation
Indices: 6968800--6968828 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
6968790 AAAAAAACCA
6968800 CTTCCT CTTCCT CTTCCT CTTCCT CTTCC
1 CTTCCT CTTCCT CTTCCT CTTCCT CTTCC
6968829 AACTTCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CTTCCT
Found at i:6969151 original size:123 final size:123
Alignment explanation
Indices: 6968964--6969199 Score: 316
Period size: 123 Copynumber: 1.9 Consensus size: 123
6968954 AAAATCATTG
* *
6968964 TTTTTCTTAAAAATCAAAACATTATTTCGAAATAGTTAAAAAAATCAAAACTTTGTTTTAAAATT
1 TTTTTCTTAAAAATCAAAACATTATTTCGAAATAGGTAAAAAAATCAAAACTTTATTTTAAAATT
* * *
6969029 TTAAACCTTCCTTTAAAATGACT-TAAAAAATA-GATTTTATTTTTCAAAATAAACTA
66 TTAAACCTTCCTTTAAAATAACTAAAAAAAACATGATTTTATTTTTCAAAATAAACTA
* * * * *
6969085 TTTTTCTTAAAGATTAAAACTTTTACTTTC-AAGTAGGTAAAACAAATCAAAATTTTATTTTAAA
1 TTTTTCTTAAAAATCAAAAC-ATTA-TTTCGAAATAGGTAAAA-AAATCAAAACTTTATTTTAAA
* *
6969149 ATTTTAAACTTTCCTTTAAAATAACTAAAAAAAACATGTTTTTATTTTTCA
63 ATTTTAAACCTTCCTTTAAAATAACTAAAAAAAACATGATTTTATTTTTCA
6969200 TAATCTAAAC
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
121 18 0.18
122 13 0.13
123 47 0.48
124 7 0.07
125 13 0.13
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.42
Consensus pattern (123 bp):
TTTTTCTTAAAAATCAAAACATTATTTCGAAATAGGTAAAAAAATCAAAACTTTATTTTAAAATT
TTAAACCTTCCTTTAAAATAACTAAAAAAAACATGATTTTATTTTTCAAAATAAACTA
Found at i:6969269 original size:114 final size:116
Alignment explanation
Indices: 6969123--6969332 Score: 309
Period size: 114 Copynumber: 1.8 Consensus size: 116
6969113 TCAAGTAGGT
* * * * *
6969123 AAAACAAATCAAAATTTTATTTTAAAATTTTAAACTTTCCTTTAAAATAACTAA-AAAAAAC-AT
1 AAAAAAAATAAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATAACAAAGAAAAAACAAT
* *
6969186 GTTT-TTATTTTTCATAATCTAAACTTTCTCCTTTTACTTTGAAATAGTTGA
66 GTTTATT-TCTTTCAAAATCTAAACTTTCTCCTTTTACTTTGAAATAGTTGA
*
6969237 AAAAAAAATAAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACAAAGAAAAAACAAA
1 AAAAAAAATAAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATAACAAAGAAAAAAC-AA
6969302 TGTTTATTTCTTTCAAAATCTAAACTTTCTC
65 TGTTTATTTCTTTCAAAATCTAAACTTTCTC
6969333 ATTTAAAAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
114 48 0.57
115 7 0.08
117 27 0.32
118 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (116 bp):
AAAAAAAATAAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATAACAAAGAAAAAACAAT
GTTTATTTCTTTCAAAATCTAAACTTTCTCCTTTTACTTTGAAATAGTTGA
Found at i:6970311 original size:83 final size:83
Alignment explanation
Indices: 6970126--6970370 Score: 373
Period size: 83 Copynumber: 2.9 Consensus size: 83
6970116 AAAGTAAACA
** * *
6970126 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCTACAATTGGGTCTTTAA
1 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAAT-GACCTCTACACCTGGGTCTCTAG
6970191 ATGCAATGAAAAGTGAATG
65 ATGCAATGAAAAGTGAATG
*
6970210 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGATCTCTACACCTGGGTCTCTAGA
1 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGACCTCTACACCTGGGTCTCTAGA
*
6970275 TGCGATGAAAAGTGAATG
66 TGCAATGAAAAGTGAATG
* * * * * *
6970293 GACCTCCATACCTAGGTCTCTAAATGCAATGAAAAGTAAATGACCTCCACACCTGGATCTCTAGA
1 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGACCTCTACACCTGGGTCTCTAGA
6970358 TGCAATGAAAAGT
66 TGCAATGAAAAGT
6970371 AAACTAGAAA
Statistics
Matches: 147, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
83 106 0.72
84 41 0.28
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (83 bp):
GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGACCTCTACACCTGGGTCTCTAGA
TGCAATGAAAAGTGAATG
Found at i:6970373 original size:41 final size:42
Alignment explanation
Indices: 6970087--6970370 Score: 344
Period size: 42 Copynumber: 6.9 Consensus size: 42
6970077 AAAGTAAACA
* * * * **
6970087 GACCTCCACACCTGTGCCTCTAAA--CTA-GAAAAGTAAACA
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
*
6970126 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATG
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
* ** *
6970168 GACCTCTACAATTGGGTCTTTAAATGCAATGAAAAGTGAATG
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
*
6970210 GACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAAT-
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
* * * *
6970251 GATCTCTACACCTGGGTCTCTAGATGCGATGAAAAGTGAATG
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
* * *
6970293 GACCTCCATACCTAGGTCTCTAAATGCAATGAAAAGTAAAT-
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
* *
6970334 GACCTCCACACCTGGATCTCTAGATGCAATGAAAAGT
1 GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGT
6970371 AAACTAGAAA
Statistics
Matches: 212, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
39 21 0.10
41 71 0.33
42 120 0.57
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (42 bp):
GACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATG
Found at i:6970422 original size:38 final size:39
Alignment explanation
Indices: 6970370--6970450 Score: 128
Period size: 38 Copynumber: 2.1 Consensus size: 39
6970360 CAATGAAAAG
6970370 TAAACTAGAAAAGTAAACGGACCTCGACACCTGGGCCTC
1 TAAACTAGAAAAGTAAACGGACCTCGACACCTGGGCCTC
* * *
6970409 TAAACTA-AAAAGTAAACGGACCTCTATACCTGGGTCTC
1 TAAACTAGAAAAGTAAACGGACCTCGACACCTGGGCCTC
6970447 TAAA
1 TAAA
6970451 TGCAATGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 32 0.82
39 7 0.18
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (39 bp):
TAAACTAGAAAAGTAAACGGACCTCGACACCTGGGCCTC
Found at i:6976734 original size:14 final size:14
Alignment explanation
Indices: 6976715--6976763 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
6976705 AGGTAGGCAA
6976715 CTTTTTTTTTTCTG
1 CTTTTTTTTTTCTG
6976729 CTTTTTTGCTTTT-TG
1 CTTTTTT--TTTTCTG
6976744 CTTTTTTTTTTGC-G
1 CTTTTTTTTTT-CTG
6976758 CTTTTT
1 CTTTTT
6976764 ACTCTATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.13
14 14 0.45
15 9 0.29
16 4 0.13
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (14 bp):
CTTTTTTTTTTCTG
Found at i:6976742 original size:21 final size:21
Alignment explanation
Indices: 6976717--6976846 Score: 71
Period size: 19 Copynumber: 6.4 Consensus size: 21
6976707 GTAGGCAACT
6976717 TTTTTTTTTCTGCTTTTTTGC
1 TTTTTTTTTCTGCTTTTTTGC
*
6976738 TTTTTGCTTT-T--TTTTTTGC
1 TTTTT-TTTTCTGCTTTTTTGC
* ** *
6976757 GCTTTTTACTCTATCTTTTTTGC
1 -TTTTTTTTTCT-GCTTTTTTGC
**
6976780 -GCTTTTTT-TGCTTTTTTG-
1 TTTTTTTTTCTGCTTTTTTGC
*
6976798 TTTTTTTTGC-GCTTTTTACT-C
1 TTTTTTTTTCTGCTTTTT--TGC
*
6976819 TTTTTTTTGC-GCTTTTTTGC
1 TTTTTTTTTCTGCTTTTTTGC
6976839 TTTTTTTT
1 TTTTTTTT
6976847 GTTTTTTTTG
Statistics
Matches: 84, Mismatches: 13, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
19 30 0.36
20 15 0.18
21 28 0.33
22 3 0.04
23 8 0.10
ACGTcount: A:0.02, C:0.15, G:0.11, T:0.72
Consensus pattern (21 bp):
TTTTTTTTTCTGCTTTTTTGC
Found at i:6976763 original size:15 final size:14
Alignment explanation
Indices: 6976716--6976763 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
6976706 GGTAGGCAAC
6976716 TTTTTTTTTTCTGCT
1 TTTTTTTTTTC-GCT
6976731 TTTTTGCTTTTT-GCT
1 TTTTT--TTTTTCGCT
*
6976746 TTTTTTTTTGCGCT
1 TTTTTTTTTTCGCT
6976760 TTTT
1 TTTT
6976764 ACTCTATCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.14
14 7 0.24
15 13 0.45
17 5 0.17
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.77
Consensus pattern (14 bp):
TTTTTTTTTTCGCT
Found at i:6976786 original size:10 final size:10
Alignment explanation
Indices: 6976771--6976838 Score: 52
Period size: 10 Copynumber: 6.9 Consensus size: 10
6976761 TTTACTCTAT
6976771 CTTTTTTGCG
1 CTTTTTTGCG
*
6976781 CTTTTTT-TG
1 CTTTTTTGCG
*
6976790 CTTTTTTG-T
1 CTTTTTTGCG
*
6976799 TTTTTTTGCG
1 CTTTTTTGCG
*
6976809 CTTTTTACT-CT
1 CTTTTT--TGCG
*
6976820 TTTTTTTGCG
1 CTTTTTTGCG
6976830 CTTTTTTGC
1 CTTTTTTGC
6976839 TTTTTTTTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
9 16 0.36
10 21 0.48
11 6 0.14
12 1 0.02
ACGTcount: A:0.01, C:0.16, G:0.13, T:0.69
Consensus pattern (10 bp):
CTTTTTTGCG
Found at i:6976795 original size:19 final size:19
Alignment explanation
Indices: 6976771--6976873 Score: 61
Period size: 17 Copynumber: 5.4 Consensus size: 19
6976761 TTTACTCTAT
6976771 CTTTTTTGCGCTTTTTTTG
1 CTTTTTTGCGCTTTTTTTG
*
6976790 CTTTTTT--GTTTTTTTTG
1 CTTTTTTGCGCTTTTTTTG
* * *
6976807 CGCTTTTTACTCTTTTTTTTGCG
1 C-TTTTTTGCGC-TTTTTTT--G
*
6976830 CTTTTTTGC-TTTTTTTTG
1 CTTTTTTGCGCTTTTTTTG
** *
6976848 -TTTTTTTTGCTGTTTTTG
1 CTTTTTTGCGCTTTTTTTG
6976866 CTATTTTT
1 CT-TTTTT
6976874 TTTGCTTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
17 16 0.25
18 13 0.20
19 8 0.12
20 12 0.19
21 7 0.11
22 6 0.09
23 2 0.03
ACGTcount: A:0.02, C:0.13, G:0.13, T:0.73
Consensus pattern (19 bp):
CTTTTTTGCGCTTTTTTTG
Found at i:6976834 original size:29 final size:30
Alignment explanation
Indices: 6976802--6976866 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
6976792 TTTTTGTTTT
6976802 TTTTGCGCTTTTTACTCTTTTTTTTGC-GC
1 TTTTGCGCTTTTTACTCTTTTTTTTGCTGC
** ** * *
6976831 TTTTTTGCTTTTTTTTGTTTTTTTTGCTGT
1 TTTTGCGCTTTTTACTCTTTTTTTTGCTGC
6976861 TTTTGC
1 TTTTGC
6976867 TATTTTTTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.02, C:0.14, G:0.14, T:0.71
Consensus pattern (30 bp):
TTTTGCGCTTTTTACTCTTTTTTTTGCTGC
Found at i:6976836 original size:50 final size:48
Alignment explanation
Indices: 6976717--6976878 Score: 200
Period size: 50 Copynumber: 3.2 Consensus size: 48
6976707 GTAGGCAACT
* *
6976717 TTTTTTTTTCTGCTTTTTTGCTTTTTGCTTTTTTTTTTGCGCTTTTTACTC
1 TTTTTTTTGC-GCTTTTTTGCTTTTT--TGTTTTTTTTGCGCTTTTTACTC
6976768 TATCTTTTTTGCGCTTTTTTTGCTTTTTTGTTTTTTTTGCGCTTTTTACTC
1 T-T-TTTTTTGCGC-TTTTTTGCTTTTTTGTTTTTTTTGCGCTTTTTACTC
* *
6976819 TTTTTTTTGCGCTTTTTTGCTTTTTTTTGTTTTTTTTGCTG-TTTTTGCTA
1 TTTTTTTTGCGCTTTTTTGC--TTTTTTGTTTTTTTTGC-GCTTTTTACTC
6976869 TTTTTTTTGC
1 TTTTTTTTGC
6976879 TTTTATTTAA
Statistics
Matches: 101, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
48 8 0.08
49 10 0.10
50 35 0.35
51 25 0.25
52 3 0.03
53 20 0.20
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.72
Consensus pattern (48 bp):
TTTTTTTTGCGCTTTTTTGCTTTTTTGTTTTTTTTGCGCTTTTTACTC
Found at i:6976874 original size:19 final size:19
Alignment explanation
Indices: 6976831--6976874 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
6976821 TTTTTTGCGC
* *
6976831 TTTTTTGCTTTTTTTTGTT
1 TTTTTTGCTTGTTTTTGTA
6976850 TTTTTTGC-TGTTTTTGCTA
1 TTTTTTGCTTGTTTTTG-TA
6976869 TTTTTT
1 TTTTTT
6976875 TTGCTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.02, C:0.07, G:0.11, T:0.80
Consensus pattern (19 bp):
TTTTTTGCTTGTTTTTGTA
Found at i:6976882 original size:9 final size:9
Alignment explanation
Indices: 6976780--6976874 Score: 68
Period size: 9 Copynumber: 10.0 Consensus size: 9
6976770 TCTTTTTTGC
6976780 GCTTTTTTT
1 GCTTTTTTT
6976789 GC-TTTTTT
1 GCTTTTTTT
*
6976797 GTTTTTTTT
1 GCTTTTTTT
*
6976806 GCGCTTTTTACT
1 --GCTTTTT-TT
6976818 -CTTTTTTTT
1 GC-TTTTTTT
*
6976827 GCGCTTTTTT
1 GC-TTTTTTT
6976837 GCTTTTTTTT
1 GC-TTTTTTT
*
6976847 GTTTTTTTT
1 GCTTTTTTT
*
6976856 GCTGTTTTT
1 GCTTTTTTT
6976865 GCTATTTTTT
1 GCT-TTTTTT
6976875 TTGCTTTTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
8 7 0.10
9 27 0.40
10 26 0.39
11 6 0.09
12 1 0.01
ACGTcount: A:0.02, C:0.12, G:0.13, T:0.74
Consensus pattern (9 bp):
GCTTTTTTT
Found at i:6976882 original size:19 final size:19
Alignment explanation
Indices: 6976831--6976882 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
6976821 TTTTTTGCGC
** *
6976831 TTTTTTGCTTTTTTTTGTT
1 TTTTTTGCTTTTTGCTATT
6976850 TTTTTTGCTGTTTTTGCTATT
1 TTTTTTGC--TTTTTGCTATT
6976871 TTTTTTGCTTTT
1 TTTTTTGCTTTT
6976883 ATTTAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
21 16 0.57
ACGTcount: A:0.02, C:0.08, G:0.12, T:0.79
Consensus pattern (19 bp):
TTTTTTGCTTTTTGCTATT
Found at i:6977521 original size:31 final size:31
Alignment explanation
Indices: 6977428--6977523 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
6977418 GGCAAATTAC
* *
6977428 AAGAGTAATTGAATCCTGATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
6977459 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
6977491 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
6977522 AA
1 AA
6977524 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 32 0.52
32 30 0.48
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:6983747 original size:3 final size:3
Alignment explanation
Indices: 6983739--6983764 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6983729 ATTCGATCTT
6983739 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
6983765 TTAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6983980 original size:9 final size:9
Alignment explanation
Indices: 6983966--6983990 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6983956 GCTACTCATG
6983966 ATTAAATTA
1 ATTAAATTA
6983975 ATTAAATTA
1 ATTAAATTA
6983984 ATTAAAT
1 ATTAAAT
6983991 AAATCCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTAAATTA
Found at i:6993854 original size:47 final size:47
Alignment explanation
Indices: 6993791--6993949 Score: 264
Period size: 47 Copynumber: 3.4 Consensus size: 47
6993781 CCCTTCGGGA
* * * * *
6993791 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6993838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6993885 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6993932 CTTATCACATATACACAC
1 CTTATCACATATATACAC
6993950 CTTGTACATC
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 106 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6996876 original size:16 final size:16
Alignment explanation
Indices: 6996855--6996923 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
6996845 TTTGGTTCGC
6996855 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6996871 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6996887 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
6996904 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6996920 TGTA
1 TGTA
6996924 ATAGCAAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:6996901 original size:33 final size:32
Alignment explanation
Indices: 6996855--6996923 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
6996845 TTTGGTTCGC
6996855 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
6996887 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
6996920 TGTA
1 TGTA
6996924 ATAGCAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:6997176 original size:16 final size:16
Alignment explanation
Indices: 6997139--6997180 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
6997129 TTAATCATAT
*
6997139 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
6997155 TT-AAATATATTATAA
1 TTAAAATATATTATAA
6997170 TTAAAATATAT
1 TTAAAATATAT
6997181 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:6997187 original size:14 final size:15
Alignment explanation
Indices: 6997148--6997189 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6997138 TTTAAACATA
*
6997148 ATTATTATTAAATAT
1 ATTATAATTAAATAT
6997163 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
6997177 A-TATAATTTAATA
1 ATTATAATTAAATA
6997190 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:6997240 original size:61 final size:61
Alignment explanation
Indices: 6997174--6997361 Score: 197
Period size: 61 Copynumber: 3.1 Consensus size: 61
6997164 TTATAATTAA
* *
6997174 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATAAATTTACTAAAATCAT
* * * * * * * ** * *
6997235 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATATTTTAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATAAATTTACTAAAATCAT
6997294 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATAAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATAAATTTACTAAAATCAT
6997355 AATATAT
1 AATATAT
6997362 GATACTATAA
Statistics
Matches: 96, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
58 1 0.01
59 31 0.32
60 24 0.25
61 39 0.41
62 1 0.01
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATAAATTTACTAAAATCAT
Found at i:6997300 original size:18 final size:17
Alignment explanation
Indices: 6997279--6997313 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6997269 TTATTATTAA
*
6997279 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6997297 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6997314 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6997311 original size:59 final size:58
Alignment explanation
Indices: 6997142--6997433 Score: 184
Period size: 59 Copynumber: 4.9 Consensus size: 58
6997132 ATCATATTTA
* *
6997142 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAA-TATAAAT
* * * * * * * *
6997201 AATCA-ATATTCTTATATGAATTTACTCA-AATCATAATATATGATACT-ATAAAATATAAATT
1 AA-CATA-ATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-TTAATAAAATATAAA-T
* * *
6997262 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAA-TATAAAT
* * * * * * * * *
6997321 AATCA-ATATTCTTATATAAATTTACTAAAATCATAATATATGATACT-ATAAAAGA-AAATTT
1 AA-CATA-ATTATTAT-TAAATATATTATAATTAAAATATATAAT-TTAATAAAATATAAA--T
* *
6997382 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAAT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAAT
6997434 TCTTAATAAT
Statistics
Matches: 170, Mismatches: 44, Indels: 38
0.67 0.17 0.15
Matches are distributed among these distances:
58 3 0.02
59 61 0.36
60 42 0.25
61 58 0.34
62 6 0.04
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (58 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATATAAAT
Found at i:6997355 original size:120 final size:120
Alignment explanation
Indices: 6997145--6997601 Score: 703
Period size: 120 Copynumber: 3.9 Consensus size: 120
6997135 ATATTTAAAC
* *
6997145 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
*
6997210 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-AA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTGAA
*
6997264 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATA
1 -ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATA
* *
6997329 TTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAAGA-AAATTTGAA
65 TTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAA-TTGAA
6997385 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC----T--T--A-A-
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
* *
6997440 ---TA-ATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTGAA
*
6997491 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
6997556 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA
6997602 NNNNNNNNNN
Statistics
Matches: 310, Mismatches: 10, Indels: 34
0.88 0.03 0.10
Matches are distributed among these distances:
106 93 0.30
107 4 0.01
110 1 0.00
111 1 0.00
112 2 0.01
114 2 0.01
115 1 0.00
116 1 0.00
119 5 0.02
120 198 0.64
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTGAA
Found at i:6997426 original size:18 final size:17
Alignment explanation
Indices: 6997399--6997433 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6997389 TTAATATTAA
*
6997399 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6997417 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6997434 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6997441 original size:24 final size:24
Alignment explanation
Indices: 6997414--6997467 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
6997404 TTTTAATTAA
*
6997414 AATATAT-AATTTAATAAAATTCTT
1 AATATATGAATTTAATAAAA-TCAT
* *
6997438 AATA-ATGAATTTACTCAAATCAT
1 AATATATGAATTTAATAAAATCAT
6997461 AATATAT
1 AATATAT
6997468 TATACTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (24 bp):
AATATATGAATTTAATAAAATCAT
Found at i:6997458 original size:106 final size:106
Alignment explanation
Indices: 6997339--6997549 Score: 395
Period size: 106 Copynumber: 2.0 Consensus size: 106
6997329 TTCTTATATA
6997339 AATTTACTAAAATCATAATATATGATACTATAAAAGAAAATTTGAAATAATTAATATTAAATATA
1 AATTTACTAAAATCATAATATATGATACTATAAAAGAAAATTTGAAATAATTAATATTAAATATA
6997404 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATG
66 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATG
* * *
6997445 AATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAAATAATTAATATTAAATATA
1 AATTTACTAAAATCATAATATATGATACTATAAAAGAAAATTTGAAATAATTAATATTAAATATA
6997510 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
66 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
6997550 TAATATTCTT
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (106 bp):
AATTTACTAAAATCATAATATATGATACTATAAAAGAAAATTTGAAATAATTAATATTAAATATA
TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATG
Found at i:6997532 original size:18 final size:17
Alignment explanation
Indices: 6997505--6997539 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6997495 TTAATATTAA
*
6997505 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6997523 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6997540 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7001577 original size:10 final size:10
Alignment explanation
Indices: 7001562--7001591 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7001552 CCCTTCTGTT
*
7001562 TAACTGTACA
1 TAACTGCACA
7001572 TAACTGCACA
1 TAACTGCACA
7001582 TAACTGCACA
1 TAACTGCACA
7001592 AGTGTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (10 bp):
TAACTGCACA
Found at i:7002053 original size:26 final size:26
Alignment explanation
Indices: 7002017--7002082 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
7002007 TTGGGTCGGG
*
7002017 TTTGGGGTGTTACACCTAGGCCCTAT
1 TTTGGGGTGTTACACCTAAGCCCTAT
7002043 TTTGGGGTGTTACACCTAAGCCCTAT
1 TTTGGGGTGTTACACCTAAGCCCTAT
7002069 TTTGGGGTGTTACA
1 TTTGGGGTGTTACA
7002083 ATTCTCCCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (26 bp):
TTTGGGGTGTTACACCTAAGCCCTAT
Found at i:7002771 original size:41 final size:41
Alignment explanation
Indices: 7002709--7002983 Score: 406
Period size: 41 Copynumber: 6.7 Consensus size: 41
7002699 CCTTTCGGGG
* *
7002709 CTTTAGCGGCTTTTTTAAAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
*
7002750 CTTTAGCGGCATTTTTGAAAAAGAGCCGCTAATGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
*
7002791 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTTAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
** ** *
7002832 CTTTAGCGGTGTTTTTGACGAAGCGCCGCTATTGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
*
7002873 CTTTAGCGGCATTTTTGAAAAAGCCCCGCTAATGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * *
7002914 CTTTTGCGGCGTTTTTGAAGAAGCGCTGCTAATGCTCAGAT
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* *
7002955 CTTTAGCGGCGTTTTTGGAAAAGCGCCGC
1 CTTTAGCGGCATTTTTGAAAAAGCGCCGC
7002984 AAAAACATTT
Statistics
Matches: 208, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 208 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (41 bp):
CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:7003022 original size:20 final size:18
Alignment explanation
Indices: 7002999--7003035 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
7002989 CATTTTATCC
7002999 GTCTATTTACTATTTAATTT
1 GTCTATTTA-TA-TTAATTT
7003019 GTCTATTTATATTAATT
1 GTCTATTTATATTAATT
7003036 AAAATTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (18 bp):
GTCTATTTATATTAATTT
Found at i:7003400 original size:7 final size:7
Alignment explanation
Indices: 7003390--7003433 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
7003380 TAAGGTTTAT
7003390 GGGTTAG
1 GGGTTAG
*
7003397 GGGTTAA
1 GGGTTAG
7003404 GGGTTAG
1 GGGTTAG
7003411 GGGTTAG
1 GGGTTAG
* *
7003418 AGGTTAA
1 GGGTTAG
*
7003425 GAGTTAG
1 GGGTTAG
7003432 GG
1 GG
7003434 ATTTAAGGTT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.50, T:0.27
Consensus pattern (7 bp):
GGGTTAG
Found at i:7003403 original size:21 final size:21
Alignment explanation
Indices: 7003379--7003433 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
7003369 GGGTTGTGAT
* * *
7003379 TTAAGGTTTATGGGTTAGGGG
1 TTAAGGGTTAGGGGTTAGAGG
7003400 TTAAGGGTTAGGGGTTAGAGG
1 TTAAGGGTTAGGGGTTAGAGG
*
7003421 TTAAGAGTTAGGG
1 TTAAGGGTTAGGG
7003434 ATTTAAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.33
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAGAGG
Found at i:7004738 original size:21 final size:21
Alignment explanation
Indices: 7004692--7004747 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
7004682 ATAAAATCCC
7004692 CTCCCCCGAAATCCCAACTTT
1 CTCCCCCGAAATCCCAACTTT
* *
7004713 -ACCCCCGCAATCCCAACTTT
1 CTCCCCCGAAATCCCAACTTT
**
7004733 CTCCCCTAAAATCCC
1 CTCCCCCGAAATCCC
7004748 TAATTTCCCC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.25, C:0.50, G:0.04, T:0.21
Consensus pattern (21 bp):
CTCCCCCGAAATCCCAACTTT
Found at i:7008236 original size:43 final size:43
Alignment explanation
Indices: 7008187--7008454 Score: 317
Period size: 43 Copynumber: 6.3 Consensus size: 43
7008177 GTTATGTTTT
* * * *
7008187 TAGCGGCGTTTTTGCGAAAAGCGCTGCTAAAGGTCATGATTTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * *
7008230 TAGCGGCG-TTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * * *
7008272 TAGCGGCGTTTGTGGGAAAAGCACCTCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* *
7008315 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAACGT--TGAGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA--TCTA
* * * * *
7008358 TAGCGGCGTTTCTTGGAAAAGCGCCGCTAAAGGTCGTGGTTTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
*
7008401 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
*
7008444 TAGCGGTGTTT
1 TAGCGGCGTTT
7008455 ATTTCGAAAA
Statistics
Matches: 193, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.01
42 37 0.19
43 152 0.79
45 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
Found at i:7008416 original size:129 final size:127
Alignment explanation
Indices: 7008187--7008454 Score: 358
Period size: 129 Copynumber: 2.1 Consensus size: 127
7008177 GTTATGTTTT
* * * * * *
7008187 TAGCGGCGTTTTTGCGAAAAGCGCTGCTAAAGGTCATGATTTATAGCGGCGTTGTGGGAAAAGCG
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAACGT-ATGATCTATAGCGGCGTTCTGGGAAAAGCG
* * * * *
7008252 CTGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGGAAAAGCACCTCTAAAGGTCGTGGTCTA
65 CCGCTAAAGGTCGTGGTCTATAGCGGCATTTGTGGGAAAAGCACCGCTAAAGGTCATGATCTA
*
7008315 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAACGT-TGAGGTCTATAGCGGCGTTTCTTGGAAAAG
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAACGTATGA--TCTATAGCGGCG-TTCTGGGAAAAG
* *
7008379 CGCCGCTAAAGGTCGTGGTTTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
63 CGCCGCTAAAGGTCGTGGTCTATAGCGGCATTTGTGGGAAAAGCACCGCTAAAGGTCATGATCTA
*
7008444 TAGCGGTGTTT
1 TAGCGGCGTTT
7008455 ATTTCGAAAA
Statistics
Matches: 122, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
126 3 0.02
128 41 0.34
129 78 0.64
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (127 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAACGTATGATCTATAGCGGCGTTCTGGGAAAAGCGC
CGCTAAAGGTCGTGGTCTATAGCGGCATTTGTGGGAAAAGCACCGCTAAAGGTCATGATCTA
Found at i:7011061 original size:11 final size:11
Alignment explanation
Indices: 7011047--7011071 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7011037 TCCCTCAACT
7011047 ATTTCTAAACC
1 ATTTCTAAACC
7011058 ATTTCTAAACC
1 ATTTCTAAACC
7011069 ATT
1 ATT
7011072 ACTATCCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTTCTAAACC
Found at i:7036513 original size:19 final size:19
Alignment explanation
Indices: 7036485--7036523 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7036475 AAATGGAAGC
7036485 AAAATAGAAAATTTTGGAA
1 AAAATAGAAAATTTTGGAA
*
7036504 AAAATTGAAAATTTTGGAA
1 AAAATAGAAAATTTTGGAA
7036523 A
1 A
7036524 TAGGGGTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
AAAATAGAAAATTTTGGAA
Found at i:7040747 original size:404 final size:403
Alignment explanation
Indices: 7040066--7040864 Score: 1580
Period size: 404 Copynumber: 2.0 Consensus size: 403
7040056 CACGAAGAAC
*
7040066 TGCTTGGAAGAGCTGAACCATCGGCTCCTTGCATTTATGCGTCCCAAGCATGTACCTGCACCAAA
1 TGCTTGGAAGAGCTGAACCATCAGCTCCTTGCATTTATGCGTCCCAAGCATGTACCTGCACCAAA
7040131 TTAATTCAACACTTAATTAAGCTTAAGACATATTAATTCGGCAGCAGCTAGGACATCTTAAAATC
66 TTAATTCAACACTTAATTAAGCTTAAGACATATTAATTCGGCAGCAGCTAGGACATCTTAAAATC
7040196 ATGCATTAAGCTTGGACATATTAAACACAAGTAATAGACTAGGACACATATTAAATTCGGCTGAA
131 ATGCATTAAGCTTGGACATATTAAACACAAGTAATAGACTAGGACACATATTAAATTCGGCTGAA
7040261 ATTAAGCATATCAAAATTTGCTAATGGTCTTAGACAAATTAATAACATGTTCTAACTATGACACA
196 ATTAAGCATATCAAAATTTGCTAATGGTCTTAGACAAATTAATAACATGTTCTAACTATGACACA
7040326 TTAAAGACTTGTTCAAGAAATCAGACATATTTAATACTAAATTATGAAATCTAAATTTGACATAT
261 TTAAAGACTTGTTCAAGAAATCAGACATATTTAATACTAAATTATGAAATCTAAATTTGACATAT
7040391 TTATGAACTAAAAACTAATTAACTAATTAACTATGAACATTAACTTATTTATTCCAGTAAATTAA
326 TTATGAACTAAAAACTAATTAACTAATTAACTATGAACATTAACTTATTTATTCCAGTAAATTAA
7040456 CCAATTGAAAGAG
391 CCAATTGAAAGAG
7040469 TGCTTGGAAGAGCTGAACCATCAGCTCCTTGCATTTATGTCGTCCCAAGCATGTACCTGCACCAA
1 TGCTTGGAAGAGCTGAACCATCAGCTCCTTGCATTTATG-CGTCCCAAGCATGTACCTGCACCAA
7040534 ATTAATTCAACACTTAATTAAGCTTAAGACATATTAATTCGGCAGCAGCTAGGACATCTTAAAAT
65 ATTAATTCAACACTTAATTAAGCTTAAGACATATTAATTCGGCAGCAGCTAGGACATCTTAAAAT
7040599 CATGCATTAAGCTTGGACATATTAAACACAAGTAATAGACTAGGACACATATTAAATTCGGCTGA
130 CATGCATTAAGCTTGGACATATTAAACACAAGTAATAGACTAGGACACATATTAAATTCGGCTGA
7040664 AATTAAGCATATCAAAATTTGCTAATGGTCTTAGACAAATTAATAACATGTTCTAACTATGACAC
195 AATTAAGCATATCAAAATTTGCTAATGGTCTTAGACAAATTAATAACATGTTCTAACTATGACAC
7040729 ATTAAAGACTTGTTCAAGAAATCAGACATATTTAATACTAAATTATGAAATCTAAATTTGACATA
260 ATTAAAGACTTGTTCAAGAAATCAGACATATTTAATACTAAATTATGAAATCTAAATTTGACATA
7040794 TTTATGAACTAAAAACTAATTAACTAATTAACTATGAACATTAACTTATTTATTCCAGTAAATTA
325 TTTATGAACTAAAAACTAATTAACTAATTAACTATGAACATTAACTTATTTATTCCAGTAAATTA
7040859 ACCAAT
390 ACCAAT
7040865 GAACTAGAAA
Statistics
Matches: 394, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
403 38 0.10
404 356 0.90
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (403 bp):
TGCTTGGAAGAGCTGAACCATCAGCTCCTTGCATTTATGCGTCCCAAGCATGTACCTGCACCAAA
TTAATTCAACACTTAATTAAGCTTAAGACATATTAATTCGGCAGCAGCTAGGACATCTTAAAATC
ATGCATTAAGCTTGGACATATTAAACACAAGTAATAGACTAGGACACATATTAAATTCGGCTGAA
ATTAAGCATATCAAAATTTGCTAATGGTCTTAGACAAATTAATAACATGTTCTAACTATGACACA
TTAAAGACTTGTTCAAGAAATCAGACATATTTAATACTAAATTATGAAATCTAAATTTGACATAT
TTATGAACTAAAAACTAATTAACTAATTAACTATGAACATTAACTTATTTATTCCAGTAAATTAA
CCAATTGAAAGAG
Found at i:7041929 original size:18 final size:20
Alignment explanation
Indices: 7041892--7041930 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7041882 AAATTATCTT
7041892 TAATATTTTTATTTATATAC
1 TAATATTTTTATTTATATAC
*
7041912 TAAT-TTTTTGTTTA-ATAC
1 TAATATTTTTATTTATATAC
7041930 T
1 T
7041931 TGAGTTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 9 0.50
20 4 0.22
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATATTTTTATTTATATAC
Found at i:7046623 original size:49 final size:50
Alignment explanation
Indices: 7046560--7046661 Score: 170
Period size: 49 Copynumber: 2.1 Consensus size: 50
7046550 CAAATGATTT
7046560 ATAATTAACTTCCAGCTTTTCGCCTATTAAATATAAACTCATTTAGTC-C
1 ATAATTAACTTCCAGCTTTTCGCCTATTAAATATAAACTCATTTAGTCAC
* * *
7046609 ATAATTAACTTCCAGCTTTTTGCCTTTTAATTATAAACTCATTTAGTCAC
1 ATAATTAACTTCCAGCTTTTCGCCTATTAAATATAAACTCATTTAGTCAC
7046659 ATA
1 ATA
7046662 GTCATTCCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 45 0.92
50 4 0.08
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (50 bp):
ATAATTAACTTCCAGCTTTTCGCCTATTAAATATAAACTCATTTAGTCAC
Found at i:7060695 original size:21 final size:21
Alignment explanation
Indices: 7060658--7060697 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7060648 ACCTGCTATT
**
7060658 GAGGAGGAAGTTGTTGTTGGA
1 GAGGAGGAAGTCCTTGTTGGA
7060679 GAGGAGGAAGTCCTTGTTG
1 GAGGAGGAAGTCCTTGTTG
7060698 TAGATGTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.05, G:0.45, T:0.28
Consensus pattern (21 bp):
GAGGAGGAAGTCCTTGTTGGA
Found at i:7063735 original size:61 final size:61
Alignment explanation
Indices: 7063632--7063772 Score: 216
Period size: 61 Copynumber: 2.3 Consensus size: 61
7063622 TATAACAGAG
* * *
7063632 CAGCCACAAAGGCTTCCAC--ATAACATATTCAGTCACTAAGGCTCACATATATTAGAGAA
1 CAGCCACAAAGGCTTCCACATATAACATATTCAGCCACTAAGGCTAACATATATCAGAGAA
*
7063691 CAGCCACAAATGCTTCCACATATAACATATTCTA-CCACTAAGGCTAACATATATCAGAGAA
1 CAGCCACAAAGGCTTCCACATATAACATATTC-AGCCACTAAGGCTAACATATATCAGAGAA
7063752 CAGCCACAAAGGCTTCCACAT
1 CAGCCACAAAGGCTTCCACAT
7063773 CGCCTGGTAC
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
59 18 0.24
61 55 0.74
62 1 0.01
ACGTcount: A:0.39, C:0.28, G:0.12, T:0.21
Consensus pattern (61 bp):
CAGCCACAAAGGCTTCCACATATAACATATTCAGCCACTAAGGCTAACATATATCAGAGAA
Found at i:7063985 original size:54 final size:53
Alignment explanation
Indices: 7063801--7064020 Score: 187
Period size: 54 Copynumber: 4.1 Consensus size: 53
7063791 CCATCATTTA
* * *
7063801 TCTTC-TTTCCCCACATGACGCCATAGTCCCAGCTAGGTCTTACACTGTATGG
1 TCTTCTTTTCCCCATATGATGCCATAGTCCCAGCTAGGTCTTACACTATATGG
* * * * * * * * *
7063853 TCTTCCTATGCCGATATGGTGTCGTAGTCTCGC-GCTAGGTCTT-CATTATATTG
1 TCTTCTTTTCCCCATATGATGCCATAGTC-C-CAGCTAGGTCTTACACTATATGG
* * * * *
7063906 TCTTCTTTT-CCTATTATGGTTCCATAGTCCCGGACTAGGTCTTACACTATATTG
1 TCTTCTTTTCCCCA-TATGATGCCATAGTCCCAG-CTAGGTCTTACACTATATGG
* * *
7063960 TCTTCTTTTCCCCATACGATGCCATAGTCCTAAACTAGGTCTTACACTATATGG
1 TCTTCTTTTCCCCATATGATGCCATAGTCC-CAGCTAGGTCTTACACTATATGG
7064014 TCTTCTT
1 TCTTCTT
7064021 GCCATAGCCA
Statistics
Matches: 133, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
51 1 0.01
52 10 0.08
53 50 0.38
54 68 0.51
55 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (53 bp):
TCTTCTTTTCCCCATATGATGCCATAGTCCCAGCTAGGTCTTACACTATATGG
Found at i:7064526 original size:21 final size:21
Alignment explanation
Indices: 7064497--7064536 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7064487 TCATAGGATG
* *
7064497 CTCATAAAAACCTCACAAACA
1 CTCACAAAAACATCACAAACA
*
7064518 CTCACAAAAAGATCACAAA
1 CTCACAAAAACATCACAAA
7064537 GTGCTCACCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.30, G:0.03, T:0.12
Consensus pattern (21 bp):
CTCACAAAAACATCACAAACA
Found at i:7068494 original size:43 final size:43
Alignment explanation
Indices: 7068433--7068518 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
7068423 TAGATTCTTA
7068433 GTAATCTCGATTGTCCAAATCAACATCGTATATCCCTAATCCT
1 GTAATCTCGATTGTCCAAATCAACATCGTATATCCCTAATCCT
7068476 GTAATCTCGATTGTCCAAATCAACATCGTATATCCCTAATCCT
1 GTAATCTCGATTGTCCAAATCAACATCGTATATCCCTAATCCT
7068519 TTGTCGTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (43 bp):
GTAATCTCGATTGTCCAAATCAACATCGTATATCCCTAATCCT
Found at i:7073343 original size:12 final size:11
Alignment explanation
Indices: 7073317--7073359 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
7073307 TAAAAATTGA
*
7073317 AAATAAATAAAT
1 AAATAAAT-ATT
7073329 AAATAAGATATT
1 AAATAA-ATATT
7073341 AAATGAAATATT
1 AAAT-AAATATT
7073353 AAATAAA
1 AAATAAA
7073360 AATCATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 3 0.11
12 21 0.75
13 4 0.14
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
AAATAAATATT
Found at i:7074745 original size:45 final size:45
Alignment explanation
Indices: 7074696--7076365 Score: 632
Period size: 44 Copynumber: 37.0 Consensus size: 45
7074686 ACAGCTCCGA
* *
7074696 GGAGATAAGACTCGCTATCTTTAATCTGCTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
** * * * * * *
7074741 GGAGATAA-AACT--TAACTTCAACCTACTTCACTGC-ACTTCAA
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* ** * *
7074782 GGAGATAAGGTTTG-TGGCTTTAATTTGCTCCACTGCAACTTCAA
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * * *
7074826 GGAGGTAGGGTATGCTATGCTCT-A-CT-CT--ACTGTAACTTTAG
1 GGAGATAAGATTTGCTAT-CTTTAATCTGCTCCACTGCAACTTCAG
* ** * * * *
7074867 AGAGATAAGATATATAATTTATAGCTTCAATCTGCTCCACTACAACTTTAA
1 GGAGATAAGAT-T-T--GCTAT--CTTTAATCTGCTCCACTGCAACTTCAG
* * * * * * * *
7074918 GGAAATGAGATTTGCCATCTTCAGTCTACTCCACTACAACTTCTG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7074963 GTAGACAAGACTTG-TAGT-TTCAATCTGCCCCACTGCAACTTTAAG
1 GGAGATAAGATTTGCTA-TCTTTAATCTGCTCCACTGCAAC-TTCAG
* *
7075008 GGA-ATAAGATTTG-TATCTTCAACCTGCTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7075051 GGAGATAAGGTTTGATATCTTCAGTCTGCTCCACTGCAACTTTAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* ** *
7075096 GGAGATAAGACTTGTAATGGTAGATTTAATCTGAC-CTACTGCAACTTCAG
1 GGAGATAAGA--T-T--TGCTATCTTTAATCTG-CTCCACTGCAACTTCAG
* * *
7075146 AGG-TATAGGA-TT-C-ATCGTTTTAATCCGCTCCACTGCAACTTCAG
1 -GGAGATAAGATTTGCTATC--TTTAATCTGCTCCACTGCAACTTCAG
* * * *
7075190 GGAGATAAGATTAG-TAGCTTCAATCTGCTCCACTGCAGCTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7075234 GAAGATAAGGTTTGATATCTTCAACCTGTTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * ** * * * * * *
7075279 GGAGACAAGACTTGGCTTTGGTGAATTTGATCCGACCTACTACAAATTCAAA
1 GGAGATAAGA-TTTGCTATCTTTAATCTG---C-TCC-ACTGCAACTTC-AG
* * *
7075331 GG-TATAGGATTT--T-TCGTTTTAATCTGCTCTACTGCAACTTCAG
1 GGAGATAAGATTTGCTATC--TTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7075374 AGAGATAAGA-TTGGTACCTTCAA-CGTACTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATC-TGCTCCACTGCAACTTCAG
* * * ** *
7075418 GGAGATAAGGTTTG--A--TATGATCTTATCTACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * *
7075459 AGAGATAAGATTTGCAATTTATAGCTTTAATCTGTTCCACTACAACTTCAG
1 GGAGATAAGATTTGC----TAT--CTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7075510 GGAAATAAGATTTGCTATCTTCAGTCTGCCCCACTACAACTTCGG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * ** *
7075555 GGGGATAAGACTTG--A-CTTTAGTCCACTCCACTACAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * ** * * * *
7075597 GGAGATAGGA-TTGTTGGCTTTAATCTACTCTACTACAACTTTAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7075641 AGAGATAAGATCTGTGATTTATAGCTTCAATTTGTTCCACTGCAACTTCAG
1 GGAGATAAGAT-T-TG--CTAT--CTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7075692 GGAAATGAGATTCT-CTATCTTCAGTCTGCTCCACTACAACTTTAG
1 GGAGATAAGATT-TGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7075737 GGAGATAAGACTT-ATAACTTCAATCTGCTCCACTGTAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * **
7075781 GGAGATAAGATTT--T-CCATT-ATCTGCTCTACTAAAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * ** * * * ** * *
7075822 AGAGATGAGATCTATTATTTATAGCCTCAACCTATTCCATTGCAACTTTAG
1 GGAGATAAGA--T-TT-GCTAT--CTTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7075873 GGAAATAAGATTCGCTATCTTCAGTCTGCTCCATTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * ** **
7075918 GGAGATAGGA-TTGTTGGCTTTAATCTAATCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7075962 GGAGATAAGATTCGCCATCTTTAGTTTGCCCCACTGCAACTTTAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * *
7076007 GG-GCATAAGACTCGCTATCTTCAGTCTGCTCCACTACAACTTTAG
1 GGAG-ATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * ** * *
7076052 GGAGATAAGACTTG-TAACTTCAATCCACTCTACTGTAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
** *
7076096 GGAGATAAGATTAT--TGGCTTTAATCTGCTCCACTACAACTTCAG
1 GGAGATAAGATT-TGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * * * *
7076140 GGAGATAAGATTT-ATCCTCTTCAGTCTAC-CTCACTACAACTTTAG
1 GGAGATAAGATTTGCT-ATCTTTAATCTGCTC-CACTGCAACTTCAG
* * * * *
7076185 GG-GATTAAGACTTGATTTCTTCAGTCTGCTCCACTGCAACTTCAG
1 GGAGA-TAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * * * *
7076230 GGATATAAGACTTG-TAACTTTAATCCGCTCCACTGCAACTTCAA
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* ** **
7076274 GGAGAT-AGAATTATTGGCTTTAATCTGCTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
* * ***
7076318 GGAGATAAGATTCGCCATCTCCTTCAATCCATTCCACTGCAACTTCAG
1 GGAGATAAGATTTGCTATCT--TT-AATCTGCTCCACTGCAACTTCAG
7076366 TGGTATAGGA
Statistics
Matches: 1207, Mismatches: 321, Indels: 191
0.70 0.19 0.11
Matches are distributed among these distances:
41 91 0.08
42 52 0.04
43 44 0.04
44 419 0.35
45 360 0.30
46 27 0.02
47 20 0.02
48 25 0.02
49 12 0.01
50 38 0.03
51 116 0.10
52 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
GGAGATAAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAG
Found at i:7075002 original size:89 final size:89
Alignment explanation
Indices: 7074891--7075105 Score: 245
Period size: 89 Copynumber: 2.4 Consensus size: 89
7074881 TAATTTATAG
* * **
7074891 CTTCAATCTGCTCCACTACAACTTTAAGGAAATGAGATTTGCCATCTTCAGTCTACTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGATTTG-CATCTTCAACCTACTCCACTACA
* *
7074956 ACTTCTGGTAGACAAGACTTG-TAGT
65 ACTTCAGGGAGACAAGACTTGATA-T
* * * * *
7074981 -TTCAATCTGCCCCACTGCAACTTTAAGGGAATAAGATTTGTATCTTCAACCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGATTTGCATCTTCAACCTACTCCACTACAA
* **
7075045 CTTCAGGGAGATAAGGTTTGATAT
66 CTTCAGGGAGACAAGACTTGATAT
* * *
7075069 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGA
7075106 CTTGTAATGG
Statistics
Matches: 104, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
88 35 0.34
89 69 0.66
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGATTTGCATCTTCAACCTACTCCACTACAA
CTTCAGGGAGACAAGACTTGATAT
Found at i:7075409 original size:184 final size:182
Alignment explanation
Indices: 7074979--7075435 Score: 587
Period size: 184 Copynumber: 2.5 Consensus size: 182
7074969 AAGACTTGTA
* * * * * *
7074979 GTTTCAATCTGCCCCACTGCAACTTTA-AGGGAATAAGATTTGTATCTTCAACCTGCTCCACTGC
1 GTTTTAATCTGCTCCACTGCAACTTCAGAGAG-ATAAGATTAGTACCTTCAA-CTGCTCCACTGC
** * *
7075043 AACTTCAGGGAGATAAGGTTTGATATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACT
64 AACTTCAGGGAGATAAGGTTTGATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGACAAGACT
* * * *
7075108 TGTAATGGTAGATTTAATCTGACCTACTGCAACTTCAGAGGTATAGGATTCATC
129 TGTAATGGTAGATTTAATCCGACCTACTACAAATTCAAAGGTATAGGATTCATC
* * *
7075162 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCCACTGCA
1 GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTAGTACCTTCAA-CTGCTCCACTGCA
* * *
7075227 GCTTCAGGAAGATAAGGTTTGATATCTTCAACCTGTTCCACTGCAACTTCAGGGAGACAAGACTT
65 ACTTCAGGGAGATAAGGTTTGATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGACAAGACTT
* * **
7075292 GGCT-TTGGT-GAATTTGATCCGACCTACTACAAATTCAAAGGTATAGGATTTTTC
130 -G-TAATGGTAG-ATTTAATCCGACCTACTACAAATTCAAAGGTATAGGATTCATC
* * *
7075346 GTTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTGGTACCTTCAACGTACTCCACTGCA
1 GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTAGTACCTTCAAC-TGCTCCACTGCA
7075411 ACTTCAGGGAGATAAGGTTTGATAT
65 ACTTCAGGGAGATAAGGTTTGATAT
7075436 GATCTTATCT
Statistics
Matches: 237, Mismatches: 32, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
183 113 0.48
184 123 0.52
185 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (182 bp):
GTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTAGTACCTTCAACTGCTCCACTGCAA
CTTCAGGGAGATAAGGTTTGATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGACAAGACTTG
TAATGGTAGATTTAATCCGACCTACTACAAATTCAAAGGTATAGGATTCATC
Found at i:7075679 original size:182 final size:179
Alignment explanation
Indices: 7075353--7076329 Score: 686
Period size: 178 Copynumber: 5.4 Consensus size: 179
7075343 TTCGTTTTAA
* * * *
7075353 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-TTGGTACCTTCAA-CGTACTCCACTGCAACTTC
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTT-G-A-CTTTAATC-TACTCCACTGCAACTTC
* *** * * * *
7075416 AGGGAGATAAGGTTTGATATGATCTTA-TCTACTGCAACTTCAGAGAGATAAGATTTGCAATTTA
62 AGGGAGATAAGATTTTCCATTATC-TACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
* *
7075480 TAGCTTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAG
126 TAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG
* * * * * *
7075534 TCTGCCCCACTACAACTTCGGGGGGATAAGACTTGACTTTAGTCCACTCCACTACAACTTCAGGG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTTGACTTTAATCTACTCCACTGCAACTTCAGGG
* * * * *
7075599 AGATAGGATTGTTGGCTTTAATCTACTCTACTACAACTTTAGAGAGATAAGATCTGTGATTTATA
66 AGATAAGATT-TT-CCATT-ATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTATA
* *
7075664 GCTTCAATTTGTTCCACTGCAACTTCAGGGAAATGAGATTCT-CTATCTTCAG
128 GCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATT-TGCTATCTTCAG
* * * * *
7075716 TCTGCTCCACTACAACTTTAGGGAGATAAGACTTATAACTTCAATCTGCTCCACTGTAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGAC-T-TGACTTTAATCTACTCCACTGCAACTTCAG
* * * * *
7075781 GGAGATAAGATTTTCCATTATCTGCTCTACTAAAACTTCAGAGAGATGAGATCTATTATTTATAG
64 GGAGATAAGATTTTCCATTATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * * * *
7075846 CCTCAACCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAG
129 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG
* * * * * *
7075897 TCTGCTCCATTGCAACTTCAGGGAGATAGGATTGTTGGCTTTAATCTAATCCACTGCAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGA--CTTGACTTTAATCTACTCCACTGCAACTTCAG
** * * * * * * *
7075962 GGAGATAAGATTCGCCATCTTTAGTTTGCCCCACTGCAACTTTAG-GGGCATAAGA-CTCG----
64 GGAGATAAGATTTTCCA---TTA-TCTACTCTACTACAACTTCAGAGAG-ATAAGATCT-GTAAT
* * * * * * * * *
7076021 CTAT--CTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTG-TAACTTCAA
123 TTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG
** * ** * * * *
7076075 TCCACTCTACTGTAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTACAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGA--CTTGACTTTAATCTACTCCACTGCAACTTCAG
* * * *
7076140 GGAGATAAGATTTATCCTCTTCAGTCTAC-CTCACTACAACTTTAG-GGGATTAAGA-CT-TGA-
64 GGAGATAAGATTT-TCC-ATT-A-TCTACTCT-ACTACAACTTCAGAGAGA-TAAGATCTGTAAT
* * * * * * *
7076200 TT-T--CTTCAGTCTGCTCCACTGCAACTTCAGGGATATAAGACTTG-TAACTTTAA
123 TTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG
* * * * * *
7076253 TCCGCTCCACTGCAACTTCAAGGAGAT-AGAATTATTGGCTTTAATCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAG-A--CTTGACTTTAATCTACTCCACTGCAACTTCA
7076317 GGGAGATAAGATT
63 GGGAGATAAGATT
7076330 CGCCATCTCC
Statistics
Matches: 653, Mismatches: 116, Indels: 57
0.79 0.14 0.07
Matches are distributed among these distances:
177 6 0.01
178 217 0.33
179 65 0.10
180 3 0.00
181 180 0.28
182 117 0.18
183 4 0.01
184 41 0.06
185 20 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (179 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGACTTGACTTTAATCTACTCCACTGCAACTTCAGGG
AGATAAGATTTTCCATTATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTATAGCT
TCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG
Found at i:7075744 original size:96 final size:94
Alignment explanation
Indices: 7075450--7076330 Score: 388
Period size: 89 Copynumber: 9.8 Consensus size: 94
7075440 TTATCTACTG
* *
7075450 CAACTTCAGAGAGATAAGAT-TTGCAATTTATAGCTTTAATCTGTTCCACTACAACTTCAGGGAA
1 CAACTTCAGAGAGATAAGATCTT---ATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAA
*
7075514 ATAAGATT-TGCTATCTTCAGTCTGCCCCACTA
63 ATAAGATTCT-CTATCTTCAGTCTGCTCCACTA
* * * * * * *
7075546 CAACTTCGGGGGGATAAGA-CTTGACTT-TAG--TCCA-C---TCCACTACAACTTCAGGGAGAT
1 CAACTTCAGAGAGATAAGATCTT-ATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAAT
* * ** * * * *
7075603 AGGATTGT-TGGCTTTAATCTACTCTACTA
65 AAGATTCTCTATCTTCAGTCTGCTCCACTA
* *
7075632 CAACTTTAGAGAGATAAGATCTGTGATTTATAGCTTCAATTTGTTCCACTGCAACTTCAGGGAAA
1 CAACTTCAGAGAGATAAGATCT-T-ATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
*
7075697 TGAGATTCTCTATCTTCAGTCTGCTCCACTA
64 TAAGATTCTCTATCTTCAGTCTGCTCCACTA
* * * * *
7075728 CAACTTTAGGGAGATAAGA-CTTA--TA-A-CTTCAATCTGCTCCACTGTAACTTCAGGGAGATA
1 CAACTTCAGAGAGATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATA
* * *
7075788 AGATTTTCCA--TT-A-TCTGCTCTACTA
66 AGATTCTCTATCTTCAGTCTGCTCCACTA
* * * * * * *
7075813 AAACTTCAGAGAGATGAGATCTATTATTTATAGCCTCAACCTATTCCATTGCAACTTTAGGGAAA
1 CAACTTCAGAGAGATAAGATC--TTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
* * *
7075878 TAAGATTCGCTATCTTCAGTCTGCTCCATTG
64 TAAGATTCTCTATCTTCAGTCTGCTCCACTA
* * * * * ** *
7075909 CAACTTCAGGGAGATAGGA---T-TGT-TGGCTTTAATCTAATCCACTGCAACTTCAGGGAGATA
1 CAACTTCAGAGAGATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATA
* * * * * *
7075969 AGATTCGCCATCTTTAGTTTGCCCCACTG
66 AGATTCTCTATCTTCAGTCTGCTCCACTA
* * *** * * * * *
7075998 CAACTTTAG-GGGCATAAGA-C-TCGCTAT--CTTCAGTCTGCTCCACTACAACTTTAGGGAGAT
1 CAACTTCAGAGAG-ATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAAT
* * * * ** * *
7076058 AAGACT-TGTAACTTCAATCCACTCTACTG
65 AAGATTCTCTATCTTCAGTCTGCTCCACTA
* * * * * * *
7076087 TAACTTCAGGGAGATAAGA--TTA--T-TGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATA
1 CAACTTCAGAGAGATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATA
* * *
7076147 AGATT-TATCCTCTTCAGTCTAC-CTCACTA
66 AGATTCTCT-ATCTTCAGTCTGCTC-CACTA
* * * * *
7076176 CAACTTTAG-GGGATTAAGA-CTTGA-TT-T--CTTCAGTCTGCTCCACTGCAACTTCAGGGATA
1 CAACTTCAGAGAGA-TAAGATCTT-ATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
* * * * * * *
7076235 TAAGACT-TGTAACTTTAATCCGCTCCACTG
64 TAAGATTCTCTATCTTCAGTCTGCTCCACTA
* * * * *
7076265 CAACTTCA-AGGAGAT-AGA-ATTA--T-TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
1 CAACTTCAGA-GAGATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAAT
7076324 AAGATTC
65 AAGATTC
7076331 GCCATCTCCT
Statistics
Matches: 602, Mismatches: 140, Indels: 93
0.72 0.17 0.11
Matches are distributed among these distances:
85 26 0.04
86 34 0.06
87 32 0.05
88 92 0.15
89 175 0.29
90 83 0.14
91 11 0.02
92 36 0.06
93 4 0.01
94 6 0.01
95 28 0.05
96 75 0.12
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (94 bp):
CAACTTCAGAGAGATAAGATCTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATA
AGATTCTCTATCTTCAGTCTGCTCCACTA
Found at i:7075893 original size:181 final size:180
Alignment explanation
Indices: 7075353--7075973 Score: 674
Period size: 181 Copynumber: 3.4 Consensus size: 180
7075343 TTCGTTTTAA
* * * *
7075353 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTGGTACCTTCAA-CGTACTCCACTGCAACTTCA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGATT-GTAACTTCAATC-TACTCCACTGCAACTTCA
* * * * * * *
7075417 GGGAGATAAGGTTTGATATGATCTTA-TCTACTGCAACTTCAGAGAGATAAGATTTGCAATTTAT
64 GGGAGATAAGATTTTACATTATC-TACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAT
* * *
7075481 AGCTTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAG
128 AGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAG
* * * * * * *
7075534 TCTGCCCCACTACAACTTCGGGGGGATAAGACTTG--ACTTTAGTCCACTCCACTACAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGA-TTGTAACTTCAATCTACTCCACTGCAACTTCAG
* * * * *
7075597 GGAGATAGGATTGTTGGCTTTAATCTACTCTACTACAACTTTAGAGAGATAAGATCTGTGATTTA
65 GGAGATAAGATT-TT-ACATT-ATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
* * *
7075662 TAGCTTCAATTTGTTCCACTGCAACTTCAGGGAAATGAGATTCTCTATCTTCAG
127 TAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAG
* * * *
7075716 TCTGCTCCACTACAACTTTAGGGAGATAAGACTTATAACTTCAATCTGCTCCACTGTAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGA-TTGTAACTTCAATCTACTCCACTGCAACTTCAG
* * * * * *
7075781 GGAGATAAGATTTTCCATTATCTGCTCTACTAAAACTTCAGAGAGATGAGATCTATTATTTATAG
65 GGAGATAAGATTTTACATTATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * * *
7075846 CCTCAACCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAG
130 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAG
* * * ** * *
7075897 TCTGCTCCATTGCAACTTCAGGGAGATAGGATTGTTGGCTTTAATCTAATCCACTGCAACTTCAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGATTG-TAACTTCAATCTACTCCACTGCAACTTCAG
7075962 GGAGATAAGATT
65 GGAGATAAGATT
7075974 CGCCATCTTT
Statistics
Matches: 363, Mismatches: 68, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
179 31 0.09
180 4 0.01
181 175 0.48
182 118 0.33
183 2 0.01
184 33 0.09
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (180 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGATTGTAACTTCAATCTACTCCACTGCAACTTCAGG
GAGATAAGATTTTACATTATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTATAGC
TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAG
Found at i:7076027 original size:134 final size:134
Alignment explanation
Indices: 7075862--7076107 Score: 350
Period size: 134 Copynumber: 1.8 Consensus size: 134
7075852 CCTATTCCAT
* * * *
7075862 TGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAGG
1 TGCAACTTTAGGGAAATAAGACTCGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAG
** * *
7075927 A-TTGTTGGCTTTAATCTAATCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTTTGC
66 ACTTG-TAACTTCAATCCAATCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTTTGC
7075991 CCCAC
130 CCCAC
** *
7075996 TGCAACTTTAGGGGCATAAGACTCGCTATCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAG
1 TGCAACTTTAGGGAAATAAGACTCGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAG
* * *
7076061 ACTTGTAACTTCAATCCACTCTACTGTAACTTCAGGGAGATAAGATT
66 ACTTGTAACTTCAATCCAATCCACTGCAACTTCAGGGAGATAAGATT
7076108 ATTGGCTTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
134 94 0.97
135 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (134 bp):
TGCAACTTTAGGGAAATAAGACTCGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAG
ACTTGTAACTTCAATCCAATCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTTTGCC
CCAC
Found at i:7076269 original size:134 final size:133
Alignment explanation
Indices: 7076024--7076327 Score: 328
Period size: 133 Copynumber: 2.3 Consensus size: 133
7076014 AGACTCGCTA
* * *
7076024 TCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTGTAACTTCAATCCACTCTACTGTA
1 TCTTCAGTCTCCTCCACTACAACTTTAGGGAGATAAGACTTGTAACTTCAATCCACTCCACTGCA
* ** * *
7076089 ACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTA
66 ACTTCAGGGAGATAAGATTAGTAACTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGATTTA
7076154 TCC
131 TCC
** * **
7076157 TCTTCAGTCTACCT-CACTACAACTTTAGGG-GATTAAGACTTGATTTCTTCAGTCTGCTCCACT
1 TCTTCAGTCT-CCTCCACTACAACTTTAGGGAGA-TAAGACTTG-TAACTTCAATCCACTCCACT
* *
7076220 GCAACTTCAGGGATATAAGACTT-GTAACTTTAATCCGCTCCACTGCAACTTCAAGGAGAT-AGA
63 GCAACTTCAGGGAGATAAGA-TTAGTAACTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGA
* **
7076283 ATTATTG
127 TTTATCC
* * * * * *
7076290 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TCTTCAGTCTCCTCCACTACAACTTTAGGGAGATAAGA
7076328 TTCGCCATCT
Statistics
Matches: 141, Mismatches: 24, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
132 4 0.03
133 68 0.48
134 67 0.48
135 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (133 bp):
TCTTCAGTCTCCTCCACTACAACTTTAGGGAGATAAGACTTGTAACTTCAATCCACTCCACTGCA
ACTTCAGGGAGATAAGATTAGTAACTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGATTTA
TCC
Found at i:7077526 original size:7 final size:7
Alignment explanation
Indices: 7077514--7077546 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
7077504 TGGCCTCTTC
7077514 TTTTTCT
1 TTTTTCT
*
7077521 TTTTTCC
1 TTTTTCT
7077528 TTTTTCT
1 TTTTTCT
7077535 TTTTTCT
1 TTTTTCT
7077542 TTTTT
1 TTTTT
7077547 TTTAGGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:7077532 original size:14 final size:13
Alignment explanation
Indices: 7077511--7077549 Score: 62
Period size: 14 Copynumber: 3.0 Consensus size: 13
7077501 CCTTGGCCTC
7077511 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
7077524 TTCCTTTTTCTTTT
1 TT-CTTTTTCTTTT
7077538 TTCTTTTT-TTTT
1 TTCTTTTTCTTTT
7077550 AGGATTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 13 0.52
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTCTTTTTCTTTT
Found at i:7083358 original size:30 final size:29
Alignment explanation
Indices: 7083324--7083384 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
7083314 AGAACAAGAG
7083324 AATAAACAAATAAATACACAAATAAACAAT
1 AATAAACAAATAAATACACAAA-AAACAAT
* * * *
7083354 AATAAACAGATTAATAGACAAACAACAAT
1 AATAAACAAATAAATACACAAAAAACAAT
7083383 AA
1 AA
7083385 GGGCAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.67, C:0.13, G:0.03, T:0.16
Consensus pattern (29 bp):
AATAAACAAATAAATACACAAAAAACAAT
Found at i:7083667 original size:185 final size:185
Alignment explanation
Indices: 7083411--7083984 Score: 1085
Period size: 185 Copynumber: 3.1 Consensus size: 185
7083401 AAAACAAGCC
7083411 AATTAAAAATAATAATAAGTAAATAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATT
1 AATTAAAAATAATAATAAG----TAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATT
7083476 GAAAATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAA
62 GAAAATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAA
7083541 AACAATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
127 AACAATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
7083600 AATTAAAAATAATAATAAGTAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATTGAAA
1 AATTAAAAATAATAATAAGTAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATTGAAA
7083665 ATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAAAACA
66 ATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAAAACA
7083730 ATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
131 ATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
7083785 AATTAAAAATAATAATAAGTAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATTGAAA
1 AATTAAAAATAATAATAAGTAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATTGAAA
* * *
7083850 ATAAATAAATAAGATATAAATAAAATATTAAATAAAAATCATTTTTTTGAATAAAAATAAAAACA
66 ATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAAAACA
7083915 ATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
131 ATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
7083970 AATTAAAAATAATAA
1 AATTAAAAATAATAA
7083985 AAATGGACTA
Statistics
Matches: 382, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
185 363 0.95
189 19 0.05
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.28
Consensus pattern (185 bp):
AATTAAAAATAATAATAAGTAAATAAATAAATAAAAACTAATATAAGTTTGATTAAAAATTGAAA
ATAAATAAATAAGATATAAATAAAATATTAAACAAAAATCACTTTTTTCAATAAAAATAAAAACA
ATTGAATTCAAATAGACTAGGATTGAATTGAAATCGAAATGAAATTCGGGGTACA
Done.