Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 22 of 161
Found at i:7098568 original size:30 final size:30
Alignment explanation
Indices: 7098534--7098591 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
7098524 AGGTGGGATG
* *
7098534 GGAAGATAATAAAAGTTTTAGGGGAAAAGT
1 GGAAGAGAATAAAAATTTTAGGGGAAAAGT
* * *
7098564 GGAAGGGAGTAAAAATTTTGGGGGAAAA
1 GGAAGAGAATAAAAATTTTAGGGGAAAA
7098592 TAAAAGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (30 bp):
GGAAGAGAATAAAAATTTTAGGGGAAAAGT
Found at i:7098818 original size:9 final size:9
Alignment explanation
Indices: 7098804--7098841 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
7098794 TATAGTTTGA
*
7098804 TATTCGGAT
1 TATTCGAAT
7098813 TATTCGAAT
1 TATTCGAAT
*
7098822 TATTCGAGT
1 TATTCGAAT
7098831 TATTCGAAT
1 TATTCGAAT
7098840 TA
1 TA
7098842 GAAAACTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7106110 original size:37 final size:37
Alignment explanation
Indices: 7106058--7106192 Score: 193
Period size: 37 Copynumber: 3.7 Consensus size: 37
7106048 TACTATCCTA
* * *
7106058 ATTTGGTGTGCTATCGGGTGGATTAGCTCTTATAAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
7106095 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
*
7106132 ATTTGGCGTGTTACCGGGTGGATTAGCTCTTATGAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
* *
7106169 GA-CTGGCGTGTT-TCGGTTGGATTA
1 -ATTTGGCGTGTTATCGGGTGGATTA
7106193 CTTGTGTACT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
36 10 0.11
37 79 0.88
38 1 0.01
ACGTcount: A:0.16, C:0.14, G:0.33, T:0.37
Consensus pattern (37 bp):
ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
Found at i:7111213 original size:22 final size:22
Alignment explanation
Indices: 7111188--7111241 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
7111178 GGTGGTGTTG
7111188 TGGTGGTGTTATACTGGTCGTA
1 TGGTGGTGTTATACTGGTCGTA
* ** *
7111210 TGGTGGTGATATGGTGGTTGTA
1 TGGTGGTGTTATACTGGTCGTA
7111232 TGGTGGTGTT
1 TGGTGGTGTT
7111242 TCGGCTTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.11, C:0.04, G:0.43, T:0.43
Consensus pattern (22 bp):
TGGTGGTGTTATACTGGTCGTA
Found at i:7111216 original size:11 final size:10
Alignment explanation
Indices: 7111178--7111240 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 10
7111168 ATGGTGGTAC
*
7111178 GGTGGTGTTGT
1 GGTGGTG-TAT
7111189 GGTGGTGTTAT
1 GGTGGTG-TAT
**
7111200 ACTGGTCGTAT
1 GGTGGT-GTAT
7111211 GGTGGTGATAT
1 GGTGGTG-TAT
7111222 GGTGGTTGTAT
1 GGTGG-TGTAT
7111233 GGTGGTGT
1 GGTGGTGT
7111241 TTCGGCTTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
10 4 0.09
11 37 0.84
12 3 0.07
ACGTcount: A:0.10, C:0.03, G:0.46, T:0.41
Consensus pattern (10 bp):
GGTGGTGTAT
Found at i:7124484 original size:26 final size:25
Alignment explanation
Indices: 7124416--7124488 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 25
7124406 TTCTCACCCA
*
7124416 AATTTTACCCTAGTAAAATTTTGAC
1 AATTTTACCCTTGTAAAATTTTGAC
* *
7124441 AATTTTACCCTTAATAAAATTTTGAT
1 AATTTTACCCTT-GTAAAATTTTGAC
*
7124467 GATTTTACCCCTTGTAAAATTT
1 AATTTTA-CCCTTGTAAAATTT
7124489 CAAGAAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 11 0.27
26 25 0.61
27 5 0.12
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (25 bp):
AATTTTACCCTTGTAAAATTTTGAC
Found at i:7137184 original size:27 final size:27
Alignment explanation
Indices: 7136884--7137171 Score: 486
Period size: 27 Copynumber: 10.6 Consensus size: 27
7136874 TAAATTGTGC
* *
7136884 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
7136911 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
7136939 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
7136966 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
7136993 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
7137020 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
7137047 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
7137074 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
7137102 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
7137130 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
7137157 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7137172 GACTTAATAT
Statistics
Matches: 254, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
27 174 0.69
28 80 0.31
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:7145090 original size:27 final size:27
Alignment explanation
Indices: 7145059--7145236 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7145049 TAAATTGTAC
7145059 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7145086 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7145112 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7145140 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7145168 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7145195 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7145222 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7145237 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7145173 original size:82 final size:81
Alignment explanation
Indices: 7145060--7145215 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7145050 AAATTGTACA
* *
7145060 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7145124 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7145141 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7145206 TGCGAGTTGA
65 TGCGAATTGA
7145216 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7145227 original size:82 final size:81
Alignment explanation
Indices: 7145056--7145236 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7145046 GATTAAATTG
* *
7145056 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7145121 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7145137 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7145201 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7145219 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7145237 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7152884 original size:19 final size:20
Alignment explanation
Indices: 7152842--7152884 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7152832 TAATGTTTTC
*
7152842 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
7152862 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
7152880 TATTC
1 TATTC
7152885 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:7158664 original size:128 final size:128
Alignment explanation
Indices: 7158436--7158670 Score: 391
Period size: 128 Copynumber: 1.8 Consensus size: 128
7158426 TTATTTAGTT
* * **
7158436 CAAGTAATTTCTTGCATACTACAACAACTTGTTAGAATTCATTAGGCTCAAATTGGACTAATTGG
1 CAAGTAATTTATTGCACACTACAACAACTCATTAGAATTCATTAGGCTCAAATTGGACTAATTGG
7158501 TCAAGAAACATCATAAAAAGACTCATTTTATTCAATTATAGACTCATTTTATTCATTAGTGTG
66 TCAAGAAACATCATAAAAAGACTCATTTTATTCAATTATAGACTCATTTTATTCATTAGTGTG
* *
7158564 CAAGTAATTTATTGCACACTACATCAACTCATTAGAATTCATTAGGCTCAAATTGGCCTAATTGG
1 CAAGTAATTTATTGCACACTACAACAACTCATTAGAATTCATTAGGCTCAAATTGGACTAATTGG
*
7158629 TCACA-AAACATCATAAAAAGATTCATTTTATTCAATTATAGA
66 TCA-AGAAACATCATAAAAAGACTCATTTTATTCAATTATAGA
7158671 TAACTAACAT
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
128 98 0.99
129 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (128 bp):
CAAGTAATTTATTGCACACTACAACAACTCATTAGAATTCATTAGGCTCAAATTGGACTAATTGG
TCAAGAAACATCATAAAAAGACTCATTTTATTCAATTATAGACTCATTTTATTCATTAGTGTG
Found at i:7161035 original size:16 final size:16
Alignment explanation
Indices: 7161014--7161047 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7161004 TTCATCTCAC
7161014 TCTAAAAATTAAAAGT
1 TCTAAAAATTAAAAGT
7161030 TCTAAAAATTAAAAGT
1 TCTAAAAATTAAAAGT
7161046 TC
1 TC
7161048 CATGGAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (16 bp):
TCTAAAAATTAAAAGT
Found at i:7170400 original size:21 final size:20
Alignment explanation
Indices: 7170376--7170418 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
7170366 TTTTAGTTAC
*
7170376 TATAAAGGTGAGATTAAATAT
1 TATAAAGGTGAAATTAAA-AT
*
7170397 TATAATGGTGAAATTAAAAT
1 TATAAAGGTGAAATTAAAAT
7170417 TA
1 TA
7170419 GCAGTGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (20 bp):
TATAAAGGTGAAATTAAAAT
Found at i:7170821 original size:16 final size:16
Alignment explanation
Indices: 7170800--7170851 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
7170790 TTTGGTTCGC
7170800 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7170816 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
7170832 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
7170848 TGTA
1 TGTA
7170852 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7170898 original size:45 final size:43
Alignment explanation
Indices: 7170832--7170926 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 43
7170822 GGATTAGAGG
*
7170832 TGTAATGGAATAGAGGTGTAATAGCAAATCAAC-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATA-CAAA--AACGTGTTTGGTTGAA
*
7170877 TGTAATGGAATAGAGGCGTAATACTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATACAAAAAC-GTGTTTGGTTGAA
7170921 TGTAAT
1 TGTAAT
7170927 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.07
44 21 0.46
45 22 0.48
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAATGGAATAGAGGCGTAATACAAAAACGTGTTTGGTTGAA
Found at i:7171109 original size:18 final size:17
Alignment explanation
Indices: 7171088--7171122 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7171078 TTATTATTTA
*
7171088 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7171106 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7171123 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7171116 original size:28 final size:27
Alignment explanation
Indices: 7171046--7171118 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
7171036 TTTATTATCA
*
7171046 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
7171074 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
7171101 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
7171119 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:7171256 original size:18 final size:17
Alignment explanation
Indices: 7171235--7171269 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7171225 TTATTATTAA
*
7171235 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7171253 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7171270 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7171281 original size:147 final size:149
Alignment explanation
Indices: 7171007--7171281 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
7170997 ATGATTATTG
*
7171007 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
7171072 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
7171137 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
7171156 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
7171219 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
7171282 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:7175092 original size:31 final size:31
Alignment explanation
Indices: 7175057--7175115 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7175047 GAACCTAGTA
* **
7175057 ACTTAAATAAAAGCTTTTTAATAGTTCAGTG
1 ACTTAAATAAAAGCATTCGAATAGTTCAGTG
*
7175088 ACTTAAATGAAAGCATTCGAATAGTTCA
1 ACTTAAATAAAAGCATTCGAATAGTTCA
7175116 ATAATCAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.34
Consensus pattern (31 bp):
ACTTAAATAAAAGCATTCGAATAGTTCAGTG
Found at i:7179624 original size:42 final size:42
Alignment explanation
Indices: 7179578--7179666 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
7179568 TCATGTTTAA
*
7179578 GAGCATCATCATTCTGGATGAACTGTTTAGGCTTGTGCTTAG
1 GAGCATCAACATTCTGGATGAACTGTTTAGGCTTGTGCTTAG
* *
7179620 GAGCATCAACATTTTGGATGAATTGTTTAGGCTTGTGCTTAG
1 GAGCATCAACATTCTGGATGAACTGTTTAGGCTTGTGCTTAG
7179662 GAGCA
1 GAGCA
7179667 ATGTGACAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (42 bp):
GAGCATCAACATTCTGGATGAACTGTTTAGGCTTGTGCTTAG
Found at i:7183923 original size:50 final size:50
Alignment explanation
Indices: 7183850--7183988 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 50
7183840 CCTTGTATTC
* * * **
7183850 CCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* ** *
7183900 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* *
7183950 CCAACGCCATGTCCCAGACATGTTCTTACATGGGACCTC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC
7183989 ATTCCTTTAA
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:7186326 original size:17 final size:17
Alignment explanation
Indices: 7186304--7186339 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7186294 AATAGAGAAC
7186304 ATAGATAAAATTAATAT
1 ATAGATAAAATTAATAT
7186321 ATAGATAAAATTAATAT
1 ATAGATAAAATTAATAT
7186338 AT
1 AT
7186340 GAATTTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATAGATAAAATTAATAT
Found at i:7187027 original size:45 final size:45
Alignment explanation
Indices: 7186938--7187035 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
7186928 AGAATGAATA
* * *
7186938 GAAATAGAGAAATGGAAAACATTCAGAAATGATTATGATTTTCTCC
1 GAAATGGAGAAATGGAAAACATTCAGAAATGAATATAATTTTCT-C
* *
7186984 GAAATGGAGAAATGG-AATCATTTC-GAAATGAATGTAATTTTCTC
1 GAAATGGAGAAATGGAAAACA-TTCAGAAATGAATATAATTTTCTC
*
7187028 AAAATGGA
1 GAAATGGA
7187036 AATGAAAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 8 0.18
45 20 0.44
46 17 0.38
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (45 bp):
GAAATGGAGAAATGGAAAACATTCAGAAATGAATATAATTTTCTC
Found at i:7190649 original size:13 final size:13
Alignment explanation
Indices: 7190633--7190670 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
7190623 AAATGTGATC
7190633 AATTACACTAAAT-
1 AATTA-ACTAAATA
7190646 AATTAACTAAATA
1 AATTAACTAAATA
7190659 AATTAAACTAAA
1 AATT-AACTAAA
7190671 AATAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 9 0.39
14 7 0.30
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.29
Consensus pattern (13 bp):
AATTAACTAAATA
Found at i:7197170 original size:18 final size:18
Alignment explanation
Indices: 7197147--7197186 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7197137 GTTTGAAAAT
*
7197147 TGAATAACGATTTGTAAA
1 TGAATAACGATTTGGAAA
* *
7197165 TGAATAATGTTTTGGAAA
1 TGAATAACGATTTGGAAA
7197183 TGAA
1 TGAA
7197187 CGACACGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (18 bp):
TGAATAACGATTTGGAAA
Found at i:7203366 original size:18 final size:18
Alignment explanation
Indices: 7203322--7203366 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
7203312 CGCAATAAAA
*
7203322 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAAGTGAAT
* * *
7203340 AACGATTTGTAAGTGAAT
1 AATGTTTTGAAAGTGAAT
7203358 AATGTTTTG
1 AATGTTTTG
7203367 GGAACGAACG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (18 bp):
AATGTTTTGAAAGTGAAT
Found at i:7225103 original size:34 final size:34
Alignment explanation
Indices: 7225065--7225134 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
7225055 AACATACTAT
* * *
7225065 ATGCTTGTATGAGCCAGCCCATCCAGCACACCAA
1 ATGCTCGTATGAGCAAACCCATCCAGCACACCAA
*
7225099 ATGCTCGTATGAGCAAATCCATCCAGCACACCAA
1 ATGCTCGTATGAGCAAACCCATCCAGCACACCAA
7225133 AT
1 AT
7225135 AACACTGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.33, G:0.16, T:0.19
Consensus pattern (34 bp):
ATGCTCGTATGAGCAAACCCATCCAGCACACCAA
Found at i:7226762 original size:32 final size:32
Alignment explanation
Indices: 7226720--7226786 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
7226710 ATACATTAAT
*
7226720 ATAAATATAACATAAATCATTAATTCACATAC
1 ATAAACATAACATAAATCATTAATTCACATAC
*
7226752 ATAAACATAACATAAATCATTAATTTACATAC
1 ATAAACATAACATAAATCATTAATTCACATAC
7226784 ATA
1 ATA
7226787 TTACCCCTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (32 bp):
ATAAACATAACATAAATCATTAATTCACATAC
Found at i:7234092 original size:14 final size:15
Alignment explanation
Indices: 7234073--7234105 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
7234063 TCAAAACAAA
7234073 AATAAAAATAAAA-T
1 AATAAAAATAAAACT
7234087 AAT-AAAATAAAACT
1 AATAAAAATAAAACT
7234101 AATAA
1 AATAA
7234106 TTTTTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.53
14 7 0.41
15 1 0.06
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAAAAATAAAACT
Found at i:7235873 original size:8 final size:8
Alignment explanation
Indices: 7235860--7235885 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7235850 ATTATTGGTT
7235860 TTATTTTA
1 TTATTTTA
7235868 TTATTTTA
1 TTATTTTA
7235876 TTATTTTA
1 TTATTTTA
7235884 TT
1 TT
7235886 TTTGATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTA
Found at i:7238855 original size:17 final size:17
Alignment explanation
Indices: 7238830--7238863 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7238820 AAAGTAGTTC
7238830 AAAACAAAAATAATAAT
1 AAAACAAAAATAATAAT
* *
7238847 AAAATAAAACTAATAAT
1 AAAACAAAAATAATAAT
7238864 TATTTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAACAAAAATAATAAT
Found at i:7243677 original size:9 final size:9
Alignment explanation
Indices: 7243663--7243705 Score: 77
Period size: 9 Copynumber: 4.7 Consensus size: 9
7243653 GTATGATGAA
7243663 ATTTTGTGT
1 ATTTTGTGT
7243672 ATTTTGTGT
1 ATTTTGTGT
7243681 ATTTTGTGT
1 ATTTTGTGT
7243690 ATTTTGTGT
1 ATTTTGTGT
7243699 AGTTTTG
1 A-TTTTG
7243706 AAATAGGGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 28 0.85
10 5 0.15
ACGTcount: A:0.12, C:0.00, G:0.23, T:0.65
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:7251443 original size:42 final size:41
Alignment explanation
Indices: 7251396--7251480 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 41
7251386 TCCCGAGGTG
* * *
7251396 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 TGATTTCATATAAGACCATGTCTGGGACAGTGGCATCG-ATA
* *
7251438 TGATTTCATATAAGACCCTGTCTGGGATAGTGGCATCGATA
1 TGATTTCATATAAGACCATGTCTGGGACAGTGGCATCGATA
7251479 TG
1 TG
7251481 TGATAACATG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
41 5 0.13
42 33 0.87
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
TGATTTCATATAAGACCATGTCTGGGACAGTGGCATCGATA
Found at i:7253142 original size:33 final size:34
Alignment explanation
Indices: 7253089--7253152 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
7253079 TATTTATGCC
*
7253089 TTAAATTGAAAATAATTTTTA-TATAGGGGAAGT
1 TTAAATTGAAAATAATTTTTATTAAAGGGGAAGT
7253122 TTAAATTGAAAATGAA-TTTTATTAAAGGGGA
1 TTAAATTGAAAAT-AATTTTTATTAAAGGGGA
7253153 GCAATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (34 bp):
TTAAATTGAAAATAATTTTTATTAAAGGGGAAGT
Found at i:7255988 original size:18 final size:18
Alignment explanation
Indices: 7255955--7256006 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
7255945 TCGTAAATCG
* * *
7255955 GATTCCGATTCTGGTTCG
1 GATTCGGATTCAGGTTCC
* *
7255973 GGTTCGGCTTCAGGTTCC
1 GATTCGGATTCAGGTTCC
7255991 GATTCGGATTCAGGTT
1 GATTCGGATTCAGGTT
7256007 AGGGAACTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.12, C:0.21, G:0.31, T:0.37
Consensus pattern (18 bp):
GATTCGGATTCAGGTTCC
Found at i:7263871 original size:71 final size:71
Alignment explanation
Indices: 7263759--7263894 Score: 218
Period size: 71 Copynumber: 1.9 Consensus size: 71
7263749 AATTGTGAAG
* * * *
7263759 GAGATTGGTTGATATGTTAGAGCTCGAATGCTTTAGATGGTAAGATGAATGTTGTTGTCGGACAA
1 GAGATTGATTGATATGTTAGAGCTCAAATGCTTTAGATGGTAAAAGGAATGTTGTTGTCGGACAA
7263824 ATTTGT
66 ATTTGT
* *
7263830 GAGATTGATTGATATGTTAGAGCTCAAATGCTTTATATGGTAAAAGGAATTTTGTTGTCGGACAA
1 GAGATTGATTGATATGTTAGAGCTCAAATGCTTTAGATGGTAAAAGGAATGTTGTTGTCGGACAA
7263895 GTCTATCAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.36
Consensus pattern (71 bp):
GAGATTGATTGATATGTTAGAGCTCAAATGCTTTAGATGGTAAAAGGAATGTTGTTGTCGGACAA
ATTTGT
Found at i:7265958 original size:20 final size:20
Alignment explanation
Indices: 7265935--7265992 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
7265925 CATGGCATTG
7265935 ACTACCAACATTGTTAAAAT
1 ACTACCAACATTGTTAAAAT
* *
7265955 ACTACCAAC-TTGGT--ATT
1 ACTACCAACATTGTTAAAAT
*
7265972 A-TACTAACATTGTTAAAAT
1 ACTACCAACATTGTTAAAAT
7265991 AC
1 AC
7265993 GTTGACATGG
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
16 6 0.21
17 7 0.24
19 7 0.24
20 9 0.31
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (20 bp):
ACTACCAACATTGTTAAAAT
Found at i:7272940 original size:14 final size:13
Alignment explanation
Indices: 7272900--7272944 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
7272890 ATTTAAAAAG
7272900 AAAATATAAATTA
1 AAAATATAAATTA
*
7272913 TAAA-A-AAATTA
1 AAAATATAAATTA
7272924 AAAATATAAATTTA
1 AAAATATAAA-TTA
7272938 AAAATAT
1 AAAATAT
7272945 TTTAAAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 9 0.33
12 2 0.07
13 6 0.22
14 10 0.37
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATATAAATTA
Found at i:7274792 original size:87 final size:87
Alignment explanation
Indices: 7274622--7274784 Score: 229
Period size: 87 Copynumber: 1.9 Consensus size: 87
7274612 TTAAATTCGG
* *
7274622 TGAATTCATCAAGCCCATCTCATTAGGACCACCCAAACTTTAGGATATGAACTCATTAAGAGTAA
1 TGAATTCATCAAGCCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTAA
7274687 GAAACTTAACCTCACATGTCGA
66 GAAACTTAACCTCACATGTCGA
* ** * * * * *
7274709 TGAATTCATTAAGTTCATCTCAATATGACCATCTAAACTCTGGGATATGAATTCATTAAGAGTAA
1 TGAATTCATCAAGCCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTAA
7274774 G-AACTTAACCT
66 GAAACTTAACCT
7274785 TAGCATGTAC
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
86 10 0.15
87 56 0.85
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (87 bp):
TGAATTCATCAAGCCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTAA
GAAACTTAACCTCACATGTCGA
Found at i:7278466 original size:22 final size:21
Alignment explanation
Indices: 7278441--7278492 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
7278431 CAGGATGTCA
*
7278441 TGTCGCGACATCGAGTGTATG
1 TGTCGCGACATCGAATGTATG
** *
7278462 CTGTCATGACATTGAATGTATG
1 -TGTCGCGACATCGAATGTATG
7278484 TCGTCGCGA
1 T-GTCGCGA
7278493 TGAGATTAGG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (21 bp):
TGTCGCGACATCGAATGTATG
Found at i:7279954 original size:12 final size:12
Alignment explanation
Indices: 7279937--7279961 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7279927 TATCTTTAGT
7279937 TGGAAAAGTGAA
1 TGGAAAAGTGAA
7279949 TGGAAAAGTGAA
1 TGGAAAAGTGAA
7279961 T
1 T
7279962 TCGTTTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (12 bp):
TGGAAAAGTGAA
Found at i:7283561 original size:94 final size:94
Alignment explanation
Indices: 7283400--7283591 Score: 375
Period size: 94 Copynumber: 2.0 Consensus size: 94
7283390 CACCAAGTCT
*
7283400 TTCAGGGCTACTATGTACACCAAAAGAAATGATAAGAGGGTTCTCTAGAATGTTTGGCAAGCTAG
1 TTCAGGGCTACTATGTACACCAAAAGAAATGATAAGAGGGTTCTCTAGAACGTTTGGCAAGCTAG
7283465 GGTTCACCAGTTGAGTTATGAATTGGGGG
66 GGTTCACCAGTTGAGTTATGAATTGGGGG
7283494 TTCAGGGCTACTATGTACACCAAAAGAAATGATAAGAGGGTTCTCTAGAACGTTTGGCAAGCTAG
1 TTCAGGGCTACTATGTACACCAAAAGAAATGATAAGAGGGTTCTCTAGAACGTTTGGCAAGCTAG
7283559 GGTTCACCAGTTGAGTTATGAATTGGGGG
66 GGTTCACCAGTTGAGTTATGAATTGGGGG
7283588 TTCA
1 TTCA
7283592 CCAATCAAAG
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (94 bp):
TTCAGGGCTACTATGTACACCAAAAGAAATGATAAGAGGGTTCTCTAGAACGTTTGGCAAGCTAG
GGTTCACCAGTTGAGTTATGAATTGGGGG
Found at i:7298477 original size:357 final size:357
Alignment explanation
Indices: 7297818--7298508 Score: 931
Period size: 357 Copynumber: 1.9 Consensus size: 357
7297808 AAATAAAGTA
** * * * *
7297818 GTTTTCAGGATCCACACGGCCTAGGCATTTCCATATGGGCTGCACACATGCCCATGTGCCAGCCT
1 GTTTTCAGGATCCACACAACCTAGGCATTTCCACACGGGCTGCACACATGCCCATCTGCCAGCCG
* ** * * *
7297883 ATGCCGATTTCGCACCCTACTTCTTAAATACACGAAAAAACCTAATTTTTACAGTTTCTGAGAAT
66 ATGCCGATTTCACACCCTACTTCCCAAATACACGAAAAAACCCAATTTTTACAGTCTCTAAGAAT
* * * * *
7297948 TCTAAAGTCTATAAATACCCATTAGAATAAGACATAAGGGACAATCAGAGAAGATTGAAGAAAAC
131 TCGAAAGTCTATAAATACCCATTAAAAGAAGACATAAGGGACAATCAAAGAAGATCGAAGAAAAC
* * * *
7298013 ACTCAAAAAACACCATCGGAATCAACTTGGAAGTAGATCTTCATCAAGATTGAAGACCTTCTTTT
196 ACTCAAAAAACACCATCAGAATCAACTCGAAAGTAGATCTCCATCAAGATTGAAGACCTTCTTTT
* * *
7298078 AATTTCATTTGAAGTTTTATTGAGTTTCTTTATGTCTTGTGGTTTTTCTGAATTTGAGATGTTTC
261 AATTTCATTTAAAATTTTATTGAGTTTCTTTATGTATTGTGGTTTTTCTGAATTTGAGATGTTTC
*
7298143 TATTCAGGATTTCAAACTTATTCCCTAGAGTT
326 TAATCAGGATTTCAAACTTATTCCCTAGAGTT
* * *
7298175 GTTTTCAGGATCCACACAACCTGGGCATTTCCACACGGGCTAG-ATACATGCCCATCTGCTAGCC
1 GTTTTCAGGATCCACACAACCTAGGCATTTCCACACGGGCT-GCACACATGCCCATCTGCCAGCC
* * ** * ** *
7298239 GGTGCTGATTTCACACCCTACTTCCCAAATACGTG-GAAAACCCAATTTTTAGGGTCTCTAAGCA
65 GATGCCGATTTCACACCCTACTTCCCAAATACACGAAAAAACCCAATTTTTACAGTCTCTAAGAA
* *
7298303 TTCGAAATTCTTTAAATACCCATTAAAAGAAGACATAAGGGGACAATCAAAGAAGATCGAAGAAA
130 TTCGAAAGTCTATAAATACCCATTAAAAGAAGACATAA-GGGACAATCAAAGAAGATCGAAGAAA
* * * *
7298368 ACACTCGAAGAAGACCATCAGAATCAACTCGAAAGTGGATCTCCATCAAGATTGAAGACC-TCTT
194 ACACTCAAAAAACACCATCAGAATCAACTCGAAAGTAGATCTCCATCAAGATTGAAGACCTTC-T
*
7298432 TTTAATTTC-TTTCAAAATTTTATTGAGTTTCTTTATGTATTGTGGTTTTTCTGACTTTGAGATG
258 TTTAATTTCATTT-AAAATTTTATTGAGTTTCTTTATGTATTGTGGTTTTTCTGAATTTGAGATG
7298496 TTTCTAATCAGGA
322 TTTCTAATCAGGA
7298509 CTATGAACTA
Statistics
Matches: 287, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
356 60 0.21
357 226 0.79
358 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (357 bp):
GTTTTCAGGATCCACACAACCTAGGCATTTCCACACGGGCTGCACACATGCCCATCTGCCAGCCG
ATGCCGATTTCACACCCTACTTCCCAAATACACGAAAAAACCCAATTTTTACAGTCTCTAAGAAT
TCGAAAGTCTATAAATACCCATTAAAAGAAGACATAAGGGACAATCAAAGAAGATCGAAGAAAAC
ACTCAAAAAACACCATCAGAATCAACTCGAAAGTAGATCTCCATCAAGATTGAAGACCTTCTTTT
AATTTCATTTAAAATTTTATTGAGTTTCTTTATGTATTGTGGTTTTTCTGAATTTGAGATGTTTC
TAATCAGGATTTCAAACTTATTCCCTAGAGTT
Found at i:7303451 original size:13 final size:13
Alignment explanation
Indices: 7303433--7303458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7303423 CCTATTTAGG
7303433 AAAATTCAATTTT
1 AAAATTCAATTTT
7303446 AAAATTCAATTTT
1 AAAATTCAATTTT
7303459 GGTGATAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAATTCAATTTT
Found at i:7305861 original size:17 final size:18
Alignment explanation
Indices: 7305832--7305865 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7305822 TGGGCCGAAA
7305832 TGGGCTGTGTGGGCCCAG
1 TGGGCTGTGTGGGCCCAG
7305850 TGGGCT-TGTGGGCCCA
1 TGGGCTGTGTGGGCCCA
7305866 CACGGGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.06, C:0.24, G:0.47, T:0.24
Consensus pattern (18 bp):
TGGGCTGTGTGGGCCCAG
Found at i:7306109 original size:27 final size:27
Alignment explanation
Indices: 7306067--7306398 Score: 285
Period size: 27 Copynumber: 12.3 Consensus size: 27
7306057 TTATGAGGTC
* * *
7306067 GTAATAATTACCGAAATACTCTCGATGG
1 GTAA-AATTACTGAAATACCCCCGATGG
***
7306095 GTAAAATTACTGAAATACCCCCGAACA
1 GTAAAATTACTGAAATACCCCCGATGG
*
7306122 GTAAAATTA-TCGAAATACCCTCGATGG
1 GTAAAATTACT-GAAATACCCCCGATGG
**
7306149 GTAAAATTACCAAAATACCCCCGATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* * *
7306176 GTAAGATTATTGAAATACCCTCGATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* ** **
7306203 CTAAAATTACCAAAATACCCTGGATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* * *** *
7306230 GAAAAATTA-TCGAAATGCCCTTTATTG
1 GTAAAATTACT-GAAATACCCCCGATGG
* *
7306257 GTAAAATTACCGAAATACCCCTGATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* * * *
7306284 GAAAAATTA-TCAAAATACTCCCAATGG
1 GTAAAATTACT-GAAATACCCCCGATGG
7306311 GTAAAATTACTGAAATACCCCCGATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* * *
7306338 GTAAAATTATTAAAATACCCCCAATGG
1 GTAAAATTACTGAAATACCCCCGATGG
* *
7306365 GTAAAATTACCGAAATACCCCTG-TAGG
1 GTAAAATTACTGAAATACCCCCGAT-GG
7306392 GTAAAAT
1 GTAAAAT
7306399 GTCCGAAAAA
Statistics
Matches: 241, Mismatches: 56, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
26 2 0.01
27 234 0.97
28 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCCCGATGG
Found at i:7306137 original size:54 final size:54
Alignment explanation
Indices: 7306067--7306425 Score: 375
Period size: 54 Copynumber: 6.6 Consensus size: 54
7306057 TTATGAGGTC
* * * ***
7306067 GTAATAATTACCGAAATACTCTCGATGGGTAAAATTACTGAAATACCCCCGAACA
1 GTAA-AATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
*
7306122 GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATGG
1 GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
* * * * **
7306176 GTAAGATTATTGAAATACCCTCGATGGCTAAAATTACCAAAATACCCTGGATGG
1 GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
* * ** * *
7306230 GAAAAATTATCGAAATGCCCTTTATTGGTAAAATTACCGAAATACCCCTGATGG
1 GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
* * * *
7306284 GAAAAATTATCAAAATACTCC-CAATGGGTAAAATTACTGAAATACCCCCGATGG
1 GTAAAATTATCGAAATAC-CCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
** * * *
7306338 GTAAAATTATTAAAATACCCCCAATGGGTAAAATTACCGAAATACCCCTG-TAGG
1 GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGAT-GG
* *
7306392 GTAAAATGT-CCGAAAAACCCTC-ATAGGGTAAAAT
1 GTAAAAT-TATCGAAATACCCTCGAT-GGGTAAAAT
7306426 AACTATAATG
Statistics
Matches: 260, Mismatches: 39, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
53 5 0.02
54 248 0.95
55 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (54 bp):
GTAAAATTATCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCGATGG
Found at i:7306208 original size:81 final size:81
Alignment explanation
Indices: 7306067--7306452 Score: 345
Period size: 81 Copynumber: 4.8 Consensus size: 81
7306057 TTATGAGGTC
* * *** *
7306067 GTAATAATTACCGAAATACTCTCGATGGGTAAAATTACTGAAATACCCCCGAACAGTAAAATTAT
1 GTAA-AATTACCGAAATACCCCCGATGGGTAAAATTACTGAAATACCCCCGATGGGTAAAATTAC
*
7306132 CGAAATACCCTCGATGG
65 CAAAATACCCTCGATGG
* * * * *
7306149 GTAAAATTACCAAAATACCCCCGATGGGTAAGATTATTGAAATACCCTCGATGGCTAAAATTACC
1 GTAAAATTACCGAAATACCCCCGATGGGTAAAATTACTGAAATACCCCCGATGGGTAAAATTACC
*
7306214 AAAATACCCTGGATGG
66 AAAATACCCTCGATGG
* * * *** * * * * *
7306230 GAAAAATTATCGAAATGCCCTTTATTGGTAAAATTACCGAAATACCCCTGATGGGAAAAATTATC
1 GTAAAATTACCGAAATACCCCCGATGGGTAAAATTACTGAAATACCCCCGATGGGTAAAATTACC
*
7306295 AAAATACTCC-CAATGG
66 AAAATAC-CCTCGATGG
* * * *
7306311 GTAAAATTACTGAAATACCCCCGATGGGTAAAATTATTAAAATACCCCCAATGGGTAAAATTACC
1 GTAAAATTACCGAAATACCCCCGATGGGTAAAATTACTGAAATACCCCCGATGGGTAAAATTACC
*
7306376 GAAATACCC-CTG-TAGG
66 AAAATACCCTC-GAT-GG
* * * *
7306392 GTAAAATGT-CCGAAAAACCCTC-ATAGGGTAAAATAACT-ATAATGCCCCCG-TAGGGTAAAAT
1 GTAAAAT-TACCGAAATACCCCCGAT-GGGTAAAATTACTGA-AATACCCCCGAT-GGGTAAAAT
7306453 GACCGTAATG
Statistics
Matches: 242, Mismatches: 55, Indels: 15
0.78 0.18 0.05
Matches are distributed among these distances:
80 8 0.03
81 227 0.94
82 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCCCGATGGGTAAAATTACTGAAATACCCCCGATGGGTAAAATTACC
AAAATACCCTCGATGG
Found at i:7306404 original size:27 final size:27
Alignment explanation
Indices: 7306256--7306589 Score: 155
Period size: 27 Copynumber: 12.4 Consensus size: 27
7306246 GCCCTTTATT
*
7306256 GGTAAAATTACCGAAATACCCCTGAT-G
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * * * *
7306283 GGAAAAATTATCAAAATACTCCCAAT-G
1 GGTAAAATGACCGAAATAC-CCCTATAG
* * *
7306310 GGTAAAATTACTGAAATACCCCCGAT-G
1 GGTAAAATGACCGAAATA-CCCCTATAG
* *** *
7306337 GGTAAAATTATTAAAATACCCCCA-ATG
1 GGTAAAATGACCGAAATACCCCTATA-G
* *
7306364 GGTAAAATTACCGAAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
7306391 GGTAAAATGTCCGAAA-AACCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * * **
7306418 GGTAAAAT-AACTATAATGCCCCCGTAG
1 GGTAAAATGACCGA-AATACCCCTATAG
* * *
7306445 GGTAAAATGACCGTAATGCCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
7306472 GGTAAAATGATCGTAATGCCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
7306499 GGTAAAATGACC-ATAATACCCCCATAA
1 GGTAAAATGACCGA-AATACCCCTATAG
* * * * * *
7306526 GGTTAAATAACCGTAATACTCCTGTAA
1 GGTAAAATGACCGAAATACCCCTATAG
* * **
7306553 GTTAAAATGACC-ATAATGCCCCTGGAG
1 GGTAAAATGACCGA-AATACCCCTATAG
7306580 GGT-AAATGAC
1 GGTAAAATGAC
7306590 TATTTTGCCC
Statistics
Matches: 239, Mismatches: 56, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
26 19 0.08
27 210 0.88
28 10 0.04
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:7306473 original size:81 final size:81
Alignment explanation
Indices: 7306351--7306562 Score: 205
Period size: 81 Copynumber: 2.6 Consensus size: 81
7306341 AAATTATTAA
* * *
7306351 AATACCCCCA-ATGGGTAAAATTACCGAAATACCCCTGTAGGGTAAAATG-TCCGAAAAACCCTC
1 AATACCCCCATA-GGGTAAAATAACCGTAATACCCCTATAGGGTAAAATGAT-CG-AAAACCCTC
*
7306414 -ATAGGGTAAAATAACTAT
63 TATAGGGTAAAATAACCAT
* * * * * * **
7306432 AATGCCCCCGTAGGGTAAAATGACCGTAATGCCTCTATAGGGTAAAATGATCGTAATGCCTCTAT
1 AATACCCCCATAGGGTAAAATAACCGTAATACCCCTATAGGGTAAAATGATCGAAAACCCTCTAT
*
7306497 AGGGTAAAATGACCAT
66 AGGGTAAAATAACCAT
* * * * * *
7306513 AATACCCCCATAAGGTTAAATAACCGTAATACTCCTGTAAGTTAAAATGA
1 AATACCCCCATAGGGTAAAATAACCGTAATACCCCTATAGGGTAAAATGA
7306563 CCATAATGCC
Statistics
Matches: 105, Mismatches: 23, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
80 6 0.06
81 97 0.92
82 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (81 bp):
AATACCCCCATAGGGTAAAATAACCGTAATACCCCTATAGGGTAAAATGATCGAAAACCCTCTAT
AGGGTAAAATAACCAT
Found at i:7306489 original size:54 final size:53
Alignment explanation
Indices: 7306363--7306569 Score: 173
Period size: 54 Copynumber: 3.8 Consensus size: 53
7306353 TACCCCCAAT
* * * * * *
7306363 GGGTAAAATTACCGAAATACCCCTGTAGGGTAAAATGTCCGAAAAACCCTCATA
1 GGGTAAAA-TAACGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCTCATA
* * *
7306417 GGGTAAAATAACTATAATGCCCCCGTAGGGTAAAATGACCGTAAT-GCCTCTATA
1 GGGTAAAATAAC-GTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCTC-ATA
* * * * *
7306471 GGGTAAAATGATCGTAATGCCTCTATAGGGTAAAATGACCATAATACCCCCATA
1 GGGTAAAAT-AACGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCTCATA
* * * * * * *
7306525 AGGTTAAATAACCGTAATACTCCTGTAAGTTAAAATGACCATAAT
1 GGGTAAAATAA-CGTAATGCCCCTGTAGGGTAAAATGACCGTAAT
7306570 GCCCCTGGAG
Statistics
Matches: 122, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
53 8 0.07
54 109 0.89
55 5 0.04
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (53 bp):
GGGTAAAATAACGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCTCATA
Found at i:7306570 original size:81 final size:81
Alignment explanation
Indices: 7306351--7306589 Score: 189
Period size: 81 Copynumber: 3.0 Consensus size: 81
7306341 AAATTATTAA
* * * * * * * * **
7306351 AATACCCCCA-ATGGGTAAAATTACCGAAATACCCCTGTAGGGTAAAATGTCCGAAAAACCCTC-
1 AATACCCCCATA-AGGTAAAATAACCGTAATACCTCTATAAGGTAAAATGACC-ATAATGCCTCT
* *
7306414 ATAGGGTAAAATAACTAT
64 ATAGGGTAAAATGACCAT
* * * * * * * *
7306432 AATGCCCCCGTAGGGTAAAATGACCGTAATGCCTCTATAGGGTAAAATGATCGTAATGCCTCTAT
1 AATACCCCCATAAGGTAAAATAACCGTAATACCTCTATAAGGTAAAATGACCATAATGCCTCTAT
7306497 AGGGTAAAATGACCAT
66 AGGGTAAAATGACCAT
* * * * *
7306513 AATACCCCCATAAGGTTAAATAACCGTAATA-CTCCTGTAAGTTAAAATGACCATAATGCCCCTG
1 AATACCCCCATAAGGTAAAATAACCGTAATACCT-CTATAAGGTAAAATGACCATAATGCCTCTA
*
7306577 GAGGGT-AAATGAC
65 TAGGGTAAAATGAC
7306590 TATTTTGCCC
Statistics
Matches: 126, Mismatches: 29, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
80 15 0.12
81 110 0.87
82 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.23
Consensus pattern (81 bp):
AATACCCCCATAAGGTAAAATAACCGTAATACCTCTATAAGGTAAAATGACCATAATGCCTCTAT
AGGGTAAAATGACCAT
Found at i:7306643 original size:24 final size:23
Alignment explanation
Indices: 7306616--7306717 Score: 96
Period size: 24 Copynumber: 4.3 Consensus size: 23
7306606 TGTAAATGGT
*
7306616 TGATTTGTCCGTGATATGAATGAC
1 TGATTTGTCTGTGAT-TGAATGAC
* * *
7306640 TGATTTGTTTGTGATTTAAATGAA
1 TGATTTGTCTGTGA-TTGAATGAC
* *
7306664 TGATTTGTCTGTGATTGGTATTAC
1 TGATTTGTCTGTGATT-GAATGAC
* *
7306688 TGATTTGTTTGTGATGTGTATGAC
1 TGATTTGTCTGTGAT-TGAATGAC
7306712 TGATTT
1 TGATTT
7306718 TGAGCGTGGT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
23 2 0.03
24 60 0.94
25 2 0.03
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.48
Consensus pattern (23 bp):
TGATTTGTCTGTGATTGAATGAC
Found at i:7306717 original size:48 final size:48
Alignment explanation
Indices: 7306605--7306704 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 48
7306595 TGCCCCTTCA
**
7306605 ATGTAAATGGTTGATTTGTCCGTGATATGAATGACTGATTTGTTTGTG
1 ATGTAAATGAATGATTTGTCCGTGATATGAATGACTGATTTGTTTGTG
* * * *
7306653 ATTTAAATGAATGATTTGTCTGTGAT-TGGTATTACTGATTTGTTTGTG
1 ATGTAAATGAATGATTTGTCCGTGATAT-GAATGACTGATTTGTTTGTG
7306701 ATGT
1 ATGT
7306705 GTATGACTGA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47
Consensus pattern (48 bp):
ATGTAAATGAATGATTTGTCCGTGATATGAATGACTGATTTGTTTGTG
Found at i:7306924 original size:32 final size:32
Alignment explanation
Indices: 7306835--7306942 Score: 105
Period size: 32 Copynumber: 3.4 Consensus size: 32
7306825 TGCTGTGAGT
* *
7306835 CTACTGATGGCTTTGTGCCGATCATATTACCG
1 CTACTGATGGCTTTGTGCCAATCATATTACTG
* * * *
7306867 TTACTAATGG-TTGTGTG-CAGTTCATATCACTG
1 CTACTGATGGCTT-TGTGCCA-ATCATATTACTG
*
7306899 CTACTGATGGCTTTATGCCAATCATATTACTG
1 CTACTGATGGCTTTGTGCCAATCATATTACTG
*
7306931 -TACTTATGGCTT
1 CTACTGATGGCTT
7306943 GTAGCCATTC
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
31 14 0.23
32 42 0.70
33 4 0.07
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (32 bp):
CTACTGATGGCTTTGTGCCAATCATATTACTG
Found at i:7325663 original size:40 final size:40
Alignment explanation
Indices: 7325565--7325827 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
7325555 TCCTCGTTCA
* * * * *
7325565 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
7325604 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
7325644 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
7325684 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
7325724 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
7325764 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
7325804 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
7325828 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:7327500 original size:16 final size:16
Alignment explanation
Indices: 7327479--7327512 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7327469 ACTATCATAA
7327479 CTTAACCATTTTATAC
1 CTTAACCATTTTATAC
7327495 CTTAACCATTTTATAC
1 CTTAACCATTTTATAC
7327511 CT
1 CT
7327513 ATTCGATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (16 bp):
CTTAACCATTTTATAC
Found at i:7343258 original size:24 final size:25
Alignment explanation
Indices: 7343226--7343287 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
7343216 CAGCTCAAAA
* *
7343226 GAGCATCCCGTTATTTGCCTT-CT-T
1 GAGCTTCCCGTTATATG-CTTCCTGT
*
7343250 GAGCTTCCCGTTATATGGTTCCTGT
1 GAGCTTCCCGTTATATGCTTCCTGT
7343275 GAGCTTCCCGTTA
1 GAGCTTCCCGTTA
7343288 ATATCTCTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.06
24 17 0.52
25 14 0.42
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.39
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGCTTCCTGT
Found at i:7347034 original size:2 final size:2
Alignment explanation
Indices: 7347022--7347139 Score: 227
Period size: 2 Copynumber: 58.5 Consensus size: 2
7347012 ATTTGAAGAA
7347022 AG AG CAG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG -AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7347065 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7347107 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7347140 AAACTCCCCA
Statistics
Matches: 115, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 113 0.98
3 2 0.02
ACGTcount: A:0.50, C:0.01, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7347669 original size:9 final size:9
Alignment explanation
Indices: 7347651--7347681 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7347641 TTTGGTTAAA
*
7347651 AATTAACCG
1 AATTACCCG
7347660 AATTACCCG
1 AATTACCCG
7347669 AATTACCCG
1 AATTACCCG
7347678 AATT
1 AATT
7347682 GAATCAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTACCCG
Found at i:7347768 original size:37 final size:37
Alignment explanation
Indices: 7347680--7347757 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
7347670 ATTACCCGAA
* *
7347680 TTGAATCAA-TACATAATTAAAAATATTACATAAGTTT
1 TTGAAT-AACTACATAATTAAAAACATTACATAAGTTC
* *
7347717 TTGAATCACTACATAATTAAAAACATTACATTA-TTC
1 TTGAATAACTACATAATTAAAAACATTACATAAGTTC
7347753 TTGAA
1 TTGAA
7347758 ATTAACACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 8 0.22
37 28 0.78
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTTC
Found at i:7349482 original size:25 final size:25
Alignment explanation
Indices: 7349444--7349500 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
7349434 GGCGCCAATG
*
7349444 AATAAAAAAATATTAATTT-TTTTTA
1 AATAAAATAATATT-ATTTATTTTTA
* *
7349469 AATAAAATATTATTTTTTATTTTTA
1 AATAAAATAATATTATTTATTTTTA
7349494 AA-AAAAT
1 AATAAAAT
7349501 TAAATAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AATAAAATAATATTATTTATTTTTA
Found at i:7349497 original size:22 final size:21
Alignment explanation
Indices: 7349446--7349486 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7349436 CGCCAATGAA
7349446 TAAAAAAATATTAATTTTTTT
1 TAAAAAAATATTAATTTTTTT
7349467 TAAATAAAATATT-ATTTTTT
1 TAAA-AAAATATTAATTTTTT
7349487 ATTTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TAAAAAAATATTAATTTTTTT
Found at i:7349588 original size:27 final size:27
Alignment explanation
Indices: 7349558--7349618 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
7349548 TCAGGTAGGT
7349558 GCCAATGAAGGTGCCTCATAGAGAGGC
1 GCCAATGAAGGTGCCTCATAGAGAGGC
* * *
7349585 GCCAATGAATGTGGCTCATAGGGAGGC
1 GCCAATGAAGGTGCCTCATAGAGAGGC
7349612 GCCAATG
1 GCCAATG
7349619 GTGGCCTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.21, G:0.34, T:0.16
Consensus pattern (27 bp):
GCCAATGAAGGTGCCTCATAGAGAGGC
Found at i:7349753 original size:3 final size:3
Alignment explanation
Indices: 7349747--7349781 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
7349737 AAGAGAAAGG
7349747 AGA AGA AG- AGA AGA AG- AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
7349782 AGAAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:7349759 original size:8 final size:8
Alignment explanation
Indices: 7349737--7349785 Score: 66
Period size: 8 Copynumber: 6.2 Consensus size: 8
7349727 AGAGAAAAAA
7349737 AAGAGAA-
1 AAGAGAAG
*
7349744 AGGAGAAG
1 AAGAGAAG
7349752 AAGAGAAG
1 AAGAGAAG
7349760 AAGAGAAG
1 AAGAGAAG
7349768 AAGAAGAAG
1 AAG-AGAAG
7349777 AAGA-AAG
1 AAGAGAAG
7349784 AA
1 AA
7349786 AAAAAAGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
7 11 0.29
8 19 0.50
9 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (8 bp):
AAGAGAAG
Found at i:7349971 original size:16 final size:16
Alignment explanation
Indices: 7349950--7350001 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
7349940 TTTGGTTCGC
7349950 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7349966 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
7349982 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
7349998 TGTA
1 TGTA
7350002 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7350087 original size:39 final size:43
Alignment explanation
Indices: 7349982--7350091 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
7349972 GGATTAGAGG
7349982 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
7350027 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
7350067 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
7350092 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:7350255 original size:16 final size:16
Alignment explanation
Indices: 7350218--7350259 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7350208 TTAATCATAT
*
7350218 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
7350234 TT-AAATATATTATAA
1 TTAAAATATATTATAA
7350249 TTAAAATATAT
1 TTAAAATATAT
7350260 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:7350266 original size:14 final size:15
Alignment explanation
Indices: 7350227--7350268 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7350217 TTTAAACATA
*
7350227 ATTATTATTAAATAT
1 ATTATAATTAAATAT
7350242 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
7350256 A-TATAATTTAATA
1 ATTATAATTAAATA
7350269 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:7353406 original size:19 final size:19
Alignment explanation
Indices: 7353382--7353420 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7353372 GTAGAAGGAA
7353382 GGAACAGAAGAGGCAAAGG
1 GGAACAGAAGAGGCAAAGG
*
7353401 GGAACAGAAGAGGCAGAGG
1 GGAACAGAAGAGGCAAAGG
7353420 G
1 G
7353421 TAAAACAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.10, G:0.46, T:0.00
Consensus pattern (19 bp):
GGAACAGAAGAGGCAAAGG
Found at i:7353696 original size:61 final size:61
Alignment explanation
Indices: 7353602--7353829 Score: 442
Period size: 61 Copynumber: 3.8 Consensus size: 61
7353592 ATGCCAATAC
7353602 ATTTATAG-TTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
1 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
7353662 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
1 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
7353723 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
1 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
7353784 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATT-TTTT
1 ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTT
7353830 GTATGAATAT
Statistics
Matches: 167, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
60 12 0.07
61 155 0.93
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (61 bp):
ATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGT
Found at i:7353722 original size:34 final size:34
Alignment explanation
Indices: 7353684--7353785 Score: 92
Period size: 34 Copynumber: 3.2 Consensus size: 34
7353674 GGATTAGTAT
7353684 TTTGTATGAATATTGTAATTATTTTATAATTAAA
1 TTTGTATGAATATTGTAATTATTTTATAATTAAA
* * ** * * *
7353718 TTTG--T--AT-TTATAGTT-TTGGATTAGT-AT
1 TTTGTATGAATATTGTAATTATTTTATAATTAAA
7353745 TTTGTATGAATATTGTAATTATTTTATAATTAAA
1 TTTGTATGAATATTGTAATTATTTTATAATTAAA
7353779 TTTGTAT
1 TTTGTAT
7353786 TTATAGTTTT
Statistics
Matches: 47, Mismatches: 14, Indels: 14
0.63 0.19 0.19
Matches are distributed among these distances:
27 5 0.11
28 6 0.13
29 7 0.15
30 2 0.04
31 2 0.04
32 7 0.15
33 6 0.13
34 12 0.26
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (34 bp):
TTTGTATGAATATTGTAATTATTTTATAATTAAA
Found at i:7353830 original size:21 final size:21
Alignment explanation
Indices: 7353805--7353887 Score: 150
Period size: 21 Copynumber: 4.0 Consensus size: 21
7353795 TGGATTAGTA
7353805 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
7353826 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
7353847 TTTT-TATGAATATTGTAATTT
1 TTTTGTATGAATATTGTAA-TT
7353868 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
7353888 ATTGTAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
20 14 0.23
21 32 0.53
22 14 0.23
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:7353856 original size:102 final size:102
Alignment explanation
Indices: 7353744--7353955 Score: 261
Period size: 102 Copynumber: 2.1 Consensus size: 102
7353734 TGGATTAGTA
* * * *
7353744 TTTTGTATGAATATTGTAATTATTTTATAATTAAAT-TTGT-AT-TTATAGTTTTGGATTAGTAT
1 TTTTTTATGAATATTGTAATTATTTTAT-A-TAAATATTGTAATATTATAATTTT-GAAT-GGAT
*
7353806 TTTGT-ATGAATATTGTAATTTTTTGTATGAATATTGTAAT
62 ATTGTAATGAATATTGTAATTTTTTGTATGAATATTGTAAT
* * * *
7353846 TTTTTTATGAATATTGTAATTTTTTTGTATGAATATTGTAATATTGTAATTTTGAATGGATATTG
1 TTTTTTATGAATATTGTAATTATTTTATATAAATATTGTAATATTATAATTTTGAATGGATATTG
*
7353911 TAATTAATATTGTAATTTTTTGTATGAATATTGTAAT
66 TAATGAATATTGTAATTTTTTGTATGAATATTGTAAT
*
7353948 TATTTTAT
1 TTTTTTAT
7353956 AATTAATTTG
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
100 4 0.04
101 12 0.13
102 71 0.75
103 8 0.08
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (102 bp):
TTTTTTATGAATATTGTAATTATTTTATATAAATATTGTAATATTATAATTTTGAATGGATATTG
TAATGAATATTGTAATTTTTTGTATGAATATTGTAAT
Found at i:7353883 original size:42 final size:41
Alignment explanation
Indices: 7353805--7353953 Score: 155
Period size: 41 Copynumber: 3.6 Consensus size: 41
7353795 TGGATTAGTA
7353805 TTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
*
7353846 TTTTTTATGAATATTGTAATTTTTTTGTATGAATATTGTAA-
1 TTTTGTATGAATATTGTAA-TTTTTTGTATGAATATTGTAAT
* * * * *
7353887 TATTG--T-AATTTTG-AATGGATATTGTAATTAATATTGTAATT
1 TTTTGTATGAATATTGTAAT--TTTTTGT-ATGAATATTGTAA-T
7353928 TTTTGTATGAATATTGTAATTATTTT
1 TTTTGTATGAATATTGTAATT-TTTT
7353954 ATAATTAATT
Statistics
Matches: 86, Mismatches: 11, Indels: 19
0.74 0.09 0.16
Matches are distributed among these distances:
36 1 0.01
37 2 0.02
38 11 0.13
39 13 0.15
41 25 0.29
42 21 0.24
43 1 0.01
44 9 0.10
45 3 0.03
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.56
Consensus pattern (41 bp):
TTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
Found at i:7353922 original size:12 final size:12
Alignment explanation
Indices: 7353905--7353966 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 12
7353895 TTTTGAATGG
7353905 ATATTGTAATTA
1 ATATTGTAATTA
7353917 ATATTGTAATT-
1 ATATTGTAATTA
* *
7353928 -TTTTGT-ATGA
1 ATATTGTAATTA
7353938 ATATTGTAATT-
1 ATATTGTAATTA
* *
7353949 ATTTTATAATTA
1 ATATTGTAATTA
7353961 AT-TTGT
1 ATATTGT
7353967 TAGTAATTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
9 2 0.05
10 5 0.13
11 17 0.44
12 15 0.38
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (12 bp):
ATATTGTAATTA
Found at i:7353942 original size:33 final size:33
Alignment explanation
Indices: 7353855--7353949 Score: 121
Period size: 33 Copynumber: 3.0 Consensus size: 33
7353845 TTTTTTTATG
7353855 AATATTGTAATTTTTTTGTATGAATATTG----T
1 AATATTGTAA-TTTTTTGTATGAATATTGTAATT
* *
7353885 AATATTGTAA--TTTTGAATGGATATTGTAATT
1 AATATTGTAATTTTTTGTATGAATATTGTAATT
7353916 AATATTGTAATTTTTTGTATGAATATTGTAATT
1 AATATTGTAATTTTTTGTATGAATATTGTAATT
7353949 A
1 A
7353950 TTTTATAATT
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
27 14 0.25
30 10 0.18
31 11 0.20
33 20 0.36
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.53
Consensus pattern (33 bp):
AATATTGTAATTTTTTGTATGAATATTGTAATT
Found at i:7353966 original size:33 final size:33
Alignment explanation
Indices: 7353855--7353966 Score: 85
Period size: 33 Copynumber: 3.5 Consensus size: 33
7353845 TTTTTTTATG
* *
7353855 AATATTGTAATTTTTTTGTATGAATATTG----T
1 AATATTATAA-TTATTTGTATGAATATTGTAATT
* * *
7353885 AATATTGTAA-T-TTTGAATGGATATTGTAATT
1 AATATTATAATTATTTGTATGAATATTGTAATT
* *
7353916 AATATTGTAATTTTTTGTATGAATATTGTAATT
1 AATATTATAATTATTTGTATGAATATTGTAATT
*
7353949 -ATTTTATAATTAATTTGT
1 AATATTATAATT-ATTTGT
7353967 TAGTAATTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
27 13 0.19
28 1 0.01
30 10 0.15
31 11 0.16
32 10 0.15
33 23 0.34
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (33 bp):
AATATTATAATTATTTGTATGAATATTGTAATT
Found at i:7355184 original size:30 final size:30
Alignment explanation
Indices: 7355150--7355240 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
7355140 AAACCTTTTT
* *
7355150 ACTTTTCCCTCAAAACTTTTACTCCTTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCTTCCC
*
7355180 ACTTTCCCCCCAAAACGTTTACTCCTTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCTTCCC
*
7355210 ACTTTCCCCCCAAAACTTTGACTCCTCTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCT-TCCC
7355241 CTCCCAACCC
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 51 0.93
31 4 0.07
ACGTcount: A:0.20, C:0.45, G:0.02, T:0.33
Consensus pattern (30 bp):
ACTTTCCCCCCAAAACTTTTACTCCTTCCC
Found at i:7356384 original size:196 final size:196
Alignment explanation
Indices: 7356050--7356442 Score: 786
Period size: 196 Copynumber: 2.0 Consensus size: 196
7356040 TTATAATAAT
7356050 TAGTTGACTTTTTATATTATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCTAGGT
1 TAGTTGACTTTTTATATTATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCTAGGT
7356115 GTTGGGAGGTCATACACGGTTCAGATATACCGTCTAATGATTGAGAATCATGCTGGAGAGGGGGT
66 GTTGGGAGGTCATACACGGTTCAGATATACCGTCTAATGATTGAGAATCATGCTGGAGAGGGGGT
7356180 AAGTTTTTCGAATATAAACTTTAGTTTATTATTTTATCTACCTCGACCCGTGTTAATATAACAAC
131 AAGTTTTTCGAATATAAACTTTAGTTTATTATTTTATCTACCTCGACCCGTGTTAATATAACAAC
7356245 G
196 G
7356246 TAGTTGACTTTTTATATTATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCTAGGT
1 TAGTTGACTTTTTATATTATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCTAGGT
7356311 GTTGGGAGGTCATACACGGTTCAGATATACCGTCTAATGATTGAGAATCATGCTGGAGAGGGGGT
66 GTTGGGAGGTCATACACGGTTCAGATATACCGTCTAATGATTGAGAATCATGCTGGAGAGGGGGT
7356376 AAGTTTTTCGAATATAAACTTTAGTTTATTATTTTATCTACCTCGACCCGTGTTAATATAACAAC
131 AAGTTTTTCGAATATAAACTTTAGTTTATTATTTTATCTACCTCGACCCGTGTTAATATAACAAC
7356441 G
196 G
7356442 T
1 T
7356443 TATTAACTGT
Statistics
Matches: 197, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 197 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (196 bp):
TAGTTGACTTTTTATATTATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCTAGGT
GTTGGGAGGTCATACACGGTTCAGATATACCGTCTAATGATTGAGAATCATGCTGGAGAGGGGGT
AAGTTTTTCGAATATAAACTTTAGTTTATTATTTTATCTACCTCGACCCGTGTTAATATAACAAC
G
Found at i:7360182 original size:20 final size:22
Alignment explanation
Indices: 7360157--7360198 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
7360147 TACCTTATCC
7360157 TTTTTCTTCT-T-TTCCTTTTT
1 TTTTTCTTCTGTCTTCCTTTTT
7360177 TTTTTCTTCTGTCTTCCTTTTT
1 TTTTTCTTCTGTCTTCCTTTTT
7360199 GTAATACCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTCTTCTGTCTTCCTTTTT
Found at i:7360645 original size:16 final size:15
Alignment explanation
Indices: 7360624--7360662 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7360614 AACAAACAGC
* *
7360624 AAAAGAAAACCAGAGA
1 AAAAGAAAAACA-AAA
7360640 AAAAGAAAAACAAAA
1 AAAAGAAAAACAAAA
7360655 AAAAGAAA
1 AAAAGAAA
7360663 TTTGTATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAACAAAA
Found at i:7361554 original size:35 final size:36
Alignment explanation
Indices: 7361515--7361687 Score: 95
Period size: 37 Copynumber: 4.5 Consensus size: 36
7361505 TTATTATTGC
7361515 TATTATTATTT-TTTATCACTATTCATTATTGTTAT
1 TATTATTATTTATTTATCACTATTCATTATTGTTAT
**
7361550 TATTA-TATTTAATTATATTTCTATTTACCTATATATATGTTACTT
1 TATTATTATTT-ATT-TATCACTA-TT--C-AT-TAT-TGTTA--T
* * * *
7361595 TATTATTTACTATTATTTTTGGACTATT-TTTATTATATAT
1 TATTA-TTA-T-TTATTTAT-CACTATTCATTATTGT-TAT
7361635 ACTATTATTATTT-TTTATCACTATTCATTATTGTTAT
1 --TATTATTATTTATTTATCACTATTCATTATTGTTAT
*
7361672 TATTA-TATTTAATTAT
1 TATTATTATTTATTTAT
7361688 ATTTCTATTT
Statistics
Matches: 105, Mismatches: 12, Indels: 42
0.66 0.08 0.26
Matches are distributed among these distances:
34 10 0.10
35 14 0.13
36 2 0.02
37 15 0.14
38 12 0.11
39 2 0.02
40 3 0.03
41 7 0.07
42 13 0.12
43 6 0.06
45 6 0.06
47 6 0.06
48 7 0.07
49 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (36 bp):
TATTATTATTTATTTATCACTATTCATTATTGTTAT
Found at i:7361714 original size:122 final size:122
Alignment explanation
Indices: 7361497--7361758 Score: 481
Period size: 122 Copynumber: 2.1 Consensus size: 122
7361487 ATCATTTAAT
*
7361497 TATTTTTATTAT-TATTGCTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTA
1 TATTTTTATTATATA-TACTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTA
*
7361561 ATTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTGGAC
65 ATTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
7361619 TATTTTTATTATATATACTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTAA
1 TATTTTTATTATATATACTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTAA
7361684 TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
66 TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
*
7361741 TGTTTTTATTATATATAC
1 TATTTTTATTATATATAC
7361759 GTACATATGT
Statistics
Matches: 136, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
122 134 0.99
123 2 0.01
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.60
Consensus pattern (122 bp):
TATTTTTATTATATATACTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTAA
TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
Found at i:7361801 original size:122 final size:122
Alignment explanation
Indices: 7361497--7361803 Score: 365
Period size: 122 Copynumber: 2.5 Consensus size: 122
7361487 ATCATTTAAT
* * * ** * * *
7361497 TATTTTTATTAT-TATTGCTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTA
1 TATTTTTATTATATA-TACTATCATTATGTAATATCACTATTCATTAATCTTACTATTATATTTA
*
7361561 ATTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTGGAC
65 ATTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
* * ** * * *
7361619 TATTTTTATTATATATACTATTATTATTTTTTATCACTATTCATTATTGTTATTATTATATTTAA
1 TATTTTTATTATATATACTATCATTATGTAATATCACTATTCATTAATCTTACTATTATATTTAA
7361684 TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
66 TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
*
7361741 TGTTTTTATTATATATACGTA-CA-TATGTAATAT-A-TATT-ATTTAATCTTAAACTATATATA
1 TATTTTTATTATATATAC-TATCATTATGTAATATCACTATTCA-TTAATCTT--ACTAT-TATA
7361801 TTT
61 TTT
7361804 TATACATTTA
Statistics
Matches: 169, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
118 1 0.01
119 10 0.06
120 1 0.01
121 11 0.07
122 142 0.84
123 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.59
Consensus pattern (122 bp):
TATTTTTATTATATATACTATCATTATGTAATATCACTATTCATTAATCTTACTATTATATTTAA
TTATATTTCTATTTACCTATATATATGTTACTTTATTATTTACTATTATTTTTAGAC
Found at i:7363170 original size:27 final size:27
Alignment explanation
Indices: 7363117--7363194 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
7363107 GAAAAATCAG
* *
7363117 ACCATTGGCGCATCTCAGCAT-GACACC
1 ACCAATGGCGCATCTCAG-ATAGGCACC
* *
7363144 ACTAATGGCGCTTCTCAGATAGGCACC
1 ACCAATGGCGCATCTCAGATAGGCACC
* * *
7363171 ACCATTGGCGCCTCTGAGATAGGC
1 ACCAATGGCGCATCTCAGATAGGC
7363195 GCCAATACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCAATGGCGCATCTCAGATAGGCACC
Found at i:7363362 original size:29 final size:30
Alignment explanation
Indices: 7363322--7363389 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
7363312 AATAATTCAT
7363322 TTTC-GTAAAT-AATTTTTTTGAC-ACCCTA
1 TTTCAGTAAATAAATTTTTTT-ACTACCCTA
* *
7363350 TTTCAGTACATAAATTTTTTTTCTACCCTA
1 TTTCAGTAAATAAATTTTTTTACTACCCTA
*
7363380 TTTGAGTAAA
1 TTTCAGTAAA
7363390 AAACCCTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.12
29 6 0.18
30 23 0.70
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.47
Consensus pattern (30 bp):
TTTCAGTAAATAAATTTTTTTACTACCCTA
Found at i:7365696 original size:15 final size:15
Alignment explanation
Indices: 7365676--7365717 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
7365666 ACTGCTTTTA
7365676 TTATTTATTAATATT
1 TTATTTATTAATATT
*
7365691 TTATTTATTTATTATT
1 TTATTTA-TTAATATT
*
7365707 TTAATTATTAA
1 TTATTTATTAA
7365718 AATAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTATTAATATT
Found at i:7369748 original size:22 final size:22
Alignment explanation
Indices: 7369722--7369773 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
7369712 TAATTAGTTT
7369722 AAATATA-TATT-TGAAATTATAA
1 AAATATATTATTAT-AAATTA-AA
7369744 AAATATATTATTAATAAATTAAA
1 AAATATATTATT-ATAAATTAAA
7369767 AAATATA
1 AAATATA
7369774 AAATCACGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.26
23 13 0.48
24 6 0.22
25 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATATATTATTATAAATTAAA
Found at i:7370516 original size:19 final size:19
Alignment explanation
Indices: 7370476--7370518 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7370466 TAATAAAATA
* *
7370476 TTTAATATTAGATTTTTAT
1 TTTAATAATAGATTTTAAT
7370495 TTTAATAATA-ATTTTAAGT
1 TTTAATAATAGATTTTAA-T
7370514 TTTAA
1 TTTAA
7370519 ATAACATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTAATAATAGATTTTAAT
Found at i:7371521 original size:31 final size:31
Alignment explanation
Indices: 7371483--7371541 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
7371473 ATATATCAAT
7371483 TTTTTTGTGTTTTCTTGAAGGGTTGTAGGAG
1 TTTTTTGTGTTTTCTTGAAGGGTTGTAGGAG
*
7371514 TTTTTTGTGTTTTCTTGAAGGTTTGTAG
1 TTTTTTGTGTTTTCTTGAAGGGTTGTAG
7371542 CAGCTAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.12, C:0.03, G:0.29, T:0.56
Consensus pattern (31 bp):
TTTTTTGTGTTTTCTTGAAGGGTTGTAGGAG
Found at i:7375105 original size:13 final size:13
Alignment explanation
Indices: 7375087--7375135 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
7375077 TAATGCGATT
7375087 CAATATGCAAACC
1 CAATATGCAAACC
7375100 CAATATGCAAACC
1 CAATATGCAAACC
* * *
7375113 CTATGTGCGAACC
1 CAATATGCAAACC
*
7375126 CTATATGCAA
1 CAATATGCAA
7375136 GCATGTTATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (13 bp):
CAATATGCAAACC
Found at i:7378328 original size:40 final size:40
Alignment explanation
Indices: 7378283--7378374 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
7378273 TGGTAATGCT
* * *
7378283 ATCGAAATTGGGTAAACCGGGATGATAGTTTAAAAAGGCC
1 ATCGAAATCGGGTAAACCAGGATGATAATTTAAAAAGGCC
* * *
7378323 ATCGAAATCGGGTAAACCAGGATGGTAATTTAATAAGGTCA
1 ATCGAAATCGGGTAAACCAGGATGATAATTTAAAAAGG-CC
7378364 AT-GAAATCGGG
1 ATCGAAATCGGG
7378375 CTACCCGAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 42 0.93
41 3 0.07
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCGAAATCGGGTAAACCAGGATGATAATTTAAAAAGGCC
Found at i:7379174 original size:13 final size:13
Alignment explanation
Indices: 7379158--7379199 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7379148 TCAATATGCA
7379158 AACCTTATATGTG
1 AACCTTATATGTG
* *
7379171 AACCTTATGTGCG
1 AACCTTATATGTG
*
7379184 AACCCTATATGTG
1 AACCTTATATGTG
7379197 AAC
1 AAC
7379200 ATGTTATGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (13 bp):
AACCTTATATGTG
Found at i:7381561 original size:37 final size:37
Alignment explanation
Indices: 7381510--7381580 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
7381500 TTCTTTTGAA
*
7381510 CATTTTCATACACATATAAAATAAGCATATACTTATT
1 CATTTTCATACACATATAAAATAACCATATACTTATT
* *
7381547 CATTTTCATTCACATATCAAATAACCATATACTT
1 CATTTTCATACACATATAAAATAACCATATACTT
7381581 GAAATTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.41, C:0.20, G:0.01, T:0.38
Consensus pattern (37 bp):
CATTTTCATACACATATAAAATAACCATATACTTATT
Found at i:7386360 original size:9 final size:9
Alignment explanation
Indices: 7386348--7386381 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
7386338 TTGTTCTTTA
*
7386348 TGTTTATTT
1 TGTTTATAT
7386357 TGTTTATAT
1 TGTTTATAT
*
7386366 TATTTATAT
1 TGTTTATAT
7386375 TGTTTAT
1 TGTTTAT
7386382 TAGATCCATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (9 bp):
TGTTTATAT
Found at i:7389311 original size:26 final size:26
Alignment explanation
Indices: 7389281--7389342 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
7389271 ACACAACGCC
* * *
7389281 ACAAAATAGGACAAAT-ACTAAGGATT
1 ACAAAATA-AACAAATAAATAAGAATT
*
7389307 ACAAAATAAACAAATAAATAATAATT
1 ACAAAATAAACAAATAAATAAGAATT
7389333 ACAAAATAAA
1 ACAAAATAAA
7389343 AATAAAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 6 0.19
26 25 0.81
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (26 bp):
ACAAAATAAACAAATAAATAAGAATT
Found at i:7391968 original size:13 final size:13
Alignment explanation
Indices: 7391947--7391980 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7391937 TCTTTGATTT
7391947 ATTATTTTATTTTA
1 ATTA-TTTATTTTA
*
7391961 GTTATTTATTTTA
1 ATTATTTATTTTA
7391974 ATTATTT
1 ATTATTT
7391981 TATCTGACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 15 0.83
14 3 0.17
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
ATTATTTATTTTA
Found at i:7398827 original size:12 final size:12
Alignment explanation
Indices: 7398812--7398841 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7398802 AACCATAATT
*
7398812 AATATATTATTA
1 AATAAATTATTA
7398824 AATAAATTATTA
1 AATAAATTATTA
7398836 AATAAA
1 AATAAA
7398842 GTATAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAAATTATTA
Found at i:7415319 original size:3 final size:3
Alignment explanation
Indices: 7415311--7415347 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7415301 CTCTGATCTC
7415311 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7415348 CTCTCACTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7415634 original size:14 final size:15
Alignment explanation
Indices: 7415617--7415645 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7415607 GTTTCTATTT
7415617 TCTTTCT-TCTTCCC
1 TCTTTCTCTCTTCCC
7415631 TCTTTCTCTCTTCCC
1 TCTTTCTCTCTTCCC
7415646 CTGCAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTCTCTCTTCCC
Found at i:7418576 original size:15 final size:16
Alignment explanation
Indices: 7418556--7418595 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
7418546 AAATAAAAAT
7418556 TTAAATTAT-ATTATA
1 TTAAATTATAATTATA
7418571 TTAAA-TATAATTATA
1 TTAAATTATAATTATA
*
7418586 -TAAATAATAA
1 TTAAATTATAA
7418596 AATATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAATTATAATTATA
Found at i:7424155 original size:3 final size:3
Alignment explanation
Indices: 7424147--7424172 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7424137 CATGATCAAG
7424147 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
7424173 TAATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7424177 original size:3 final size:3
Alignment explanation
Indices: 7424171--7424197 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7424161 CAACAACAAC
7424171 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7424198 GAAAAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7424408 original size:25 final size:27
Alignment explanation
Indices: 7424376--7424435 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 27
7424366 TATAAAATAT
* *
7424376 AAAAATATATA-TATGT-ACTTATAAG
1 AAAAATATATAGTATGTGAATTATAAA
7424401 AAAAATATATATGTATGTGAATTATAAA
1 AAAAATATATA-GTATGTGAATTATAAA
7424429 AAAAATA
1 AAAAATA
7424436 AAAAATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 11 0.37
27 5 0.17
28 14 0.47
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAAATATATAGTATGTGAATTATAAA
Found at i:7424412 original size:23 final size:22
Alignment explanation
Indices: 7424373--7424415 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
7424363 AATTATAAAA
*
7424373 TATAAAAATATATATATGTACT
1 TATAAAAAAATATATATGTACT
7424395 TATAAGAAAAATATATATGTA
1 TATAA-AAAAATATATATGTA
7424416 TGTGAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (22 bp):
TATAAAAAAATATATATGTACT
Found at i:7424418 original size:27 final size:26
Alignment explanation
Indices: 7424376--7424435 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
7424366 TATAAAATAT
*
7424376 AAAAATATATATATGT-ACTTATAAGA
1 AAAAATATATATATGTGAATTATAA-A
*
7424402 AAAATATATATGTATGTGAATTATAAA
1 AAAA-ATATATATATGTGAATTATAAA
7424429 AAAAATA
1 AAAAATA
7424436 AAAAATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 7 0.23
27 16 0.53
28 7 0.23
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (26 bp):
AAAAATATATATATGTGAATTATAAA
Found at i:7425146 original size:23 final size:22
Alignment explanation
Indices: 7425103--7425160 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7425093 AAAGGGTATC
* *
7425103 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7425124 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7425147 TGCATATCATATCT
1 TACAAATCATATCT
7425161 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7435609 original size:19 final size:20
Alignment explanation
Indices: 7435566--7435618 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
7435556 TGCATGCTGG
*
7435566 CACACGAAGCGCATCTTAGT
1 CACACGAAACGCATCTTAGT
*
7435586 -GCACGAAACGCATCTT-GT
1 CACACGAAACGCATCTTAGT
*
7435604 CACACGAAATGCATC
1 CACACGAAACGCATC
7435619 CTAACACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 2 0.07
19 26 0.93
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (20 bp):
CACACGAAACGCATCTTAGT
Found at i:7442725 original size:28 final size:29
Alignment explanation
Indices: 7442684--7442738 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
7442674 GTCTTGATTC
* * *
7442684 TTAAAAATCTAAAATTTAAAATAAAATAT
1 TTAAAAATCAAAAAATAAAAATAAAATAT
7442713 TTAAAAAT-AAAAAATAAAAATAAAAT
1 TTAAAAATCAAAAAATAAAAATAAAAT
7442739 TATAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (29 bp):
TTAAAAATCAAAAAATAAAAATAAAATAT
Found at i:7442753 original size:13 final size:13
Alignment explanation
Indices: 7442701--7442762 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
7442691 TCTAAAATTT
7442701 AAAATAAAATATTTA
1 AAAAT-AAATA-TTA
* *
7442716 AAAATAAAAAATA
1 AAAATAAATATTA
7442729 AAAATAAA-ATTA
1 AAAATAAATATTA
*
7442741 TAAATAAATATTA
1 AAAATAAATATTA
*
7442754 TAAATAAAT
1 AAAATAAAT
7442763 GAATACCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.24
13 23 0.55
14 4 0.10
15 5 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATAAATATTA
Found at i:7445688 original size:137 final size:138
Alignment explanation
Indices: 7445442--7446145 Score: 663
Period size: 137 Copynumber: 5.2 Consensus size: 138
7445432 GTAGCTTTAT
* * * ** * * *
7445442 TAGCTATGTTGGATCTGCGAGCTTAACTCCCCAAGCTCTTATAATGTCAATTGGGAGCGTAGATC
1 TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
** * * *
7445507 CTTTAGTTGCTTTGGAGGTTGTGATCTTAAACTGACAAACCTTTATGACATCAGTTGGGAGCGTA
66 CGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGTA
7445572 GGTCT-GC
131 GGTCTCGC
* * * *
7445579 TAGCTGTGTTGGAGCTGCGAGCTTAACTTTACGAGCTCTTGTAATGTCAATTGAGA-CTGAAGGT
1 TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGC-GTAGGT
* * ** * * * *
7445643 CCGCTAGCTGCTTTGGAGATTGCGATCTTAAATTGACAAACCTTTATGACATAAGTTAGGAGTGT
65 CCGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGT
*
7445708 AGGTC-CAC
130 AGGTCTCGC
* * * ** * **
7445716 TGGTTGTGCCGGAGCTGCGAGCTTAACTCTGTGAGCTCTTATAATGTCAGCTGGGAGCGTAGGTC
1 TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
* * * * * * *
7445781 TGGTAGTTGCTTTGGAGGTTACGATCTTAAATCGATAAACCTTTATAACATCAGCTGGGAGCCTA
66 CGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGTA
7445846 GGT-TCGC
131 GGTCTCGC
* * * * * * * ** ***
7445853 TAGCTATGTCAGATCTGAGAGCTAAACTCCATGAGCTCTTGTAATGTCAGCTGGGAGTACAGGTC
1 TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
* * * *
7445918 TGCTA---GATTTGGAGGTTGTGATCTTAAACCGACAAACCTTTATGACATCAACTGGGAGCGTA
66 CGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGTA
*
7445980 GG-CTCAC
131 GGTCTCGC
* ** * * * *
7445987 TAGTTGTGTCGGATTTGTGAGCTTAACTTTGCAAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
1 TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
* * * * * *
7446052 CAC-AGTTGCTTTGGAGGTTGCAATCTTAAACCGATAAACCTTTATGACATCAACTAGGAGCATA
66 CGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGTA
7446116 GGT-TCGC
131 GGTCTCGC
* * *
7446123 TAGCTGTGTTGAAGCTGTGAGCT
1 TAGCTGTGTCGGAGCTGCGAGCT
7446146 CTTGTAATGC
Statistics
Matches: 458, Mismatches: 100, Indels: 19
0.79 0.17 0.03
Matches are distributed among these distances:
133 1 0.00
134 104 0.23
136 75 0.16
137 277 0.60
138 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (138 bp):
TAGCTGTGTCGGAGCTGCGAGCTTAACTCTACGAGCTCTTGTAATGTCAATTGGGAGCGTAGGTC
CGCTAGTTGCTTTGGAGGTTGCGATCTTAAACCGACAAACCTTTATGACATCAGCTGGGAGCGTA
GGTCTCGC
Found at i:7445712 original size:69 final size:67
Alignment explanation
Indices: 7445514--7445713 Score: 165
Period size: 68 Copynumber: 2.9 Consensus size: 67
7445504 ATCCTTTAGT
* * * * *
7445514 TGCTTTGGAGGTTGTGATCTTAAACTGACAAACCTTTATGACATCAGTTGGGAGCGTAGGTCTGC
1 TGCTTTGGA-GTTGCGATCTTAAATTGACAAACCTTTATGACATAAGTT-GGAGTGTAGGTCCGC
7445579 TAGC
64 TAGC
* * * * * * * * *
7445583 TG-TGTTGGAGCTGCGAGCTTAACTTTACGAGCTCTTGTAATGTC--AA-TTGAGACTGAAGGTC
1 TGCT-TTGGAGTTGCGATCTTAAATTGACAAAC-CTT-T-ATGACATAAGTTG-GAGTGTAGGTC
7445644 CGCTAGC
61 CGCTAGC
7445651 TGCTTTGGAGATTGCGATCTTAAATTGACAAACCTTTATGACATAAGTTAGGAGTGTAGGTCC
1 TGCTTTGGAG-TTGCGATCTTAAATTGACAAACCTTTATGACATAAGTT-GGAGTGTAGGTCC
7445714 ACTGGTTGTG
Statistics
Matches: 97, Mismatches: 23, Indels: 22
0.68 0.16 0.15
Matches are distributed among these distances:
66 4 0.04
67 2 0.02
68 45 0.46
69 40 0.41
70 2 0.02
71 4 0.04
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (67 bp):
TGCTTTGGAGTTGCGATCTTAAATTGACAAACCTTTATGACATAAGTTGGAGTGTAGGTCCGCTA
GC
Found at i:7454654 original size:38 final size:36
Alignment explanation
Indices: 7454587--7454679 Score: 89
Period size: 36 Copynumber: 2.5 Consensus size: 36
7454577 TATAATTAGT
* * * *
7454587 GCTCACATTCAACATATGGGTTCGAACATATATTCATG
1 GCTCCCATACAACATATGGATTCGAAC--ATATTAATG
**
7454625 G-TCCCCATACAACATATGGATTCTCACATATTAATG
1 GCT-CCCATACAACATATGGATTCGAACATATTAATG
*
7454661 GCTCGCATACAACATATGG
1 GCTCCCATACAACATATGG
7454680 GCTCGCATAC
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
36 24 0.52
37 2 0.04
38 20 0.43
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (36 bp):
GCTCCCATACAACATATGGATTCGAACATATTAATG
Found at i:7458185 original size:43 final size:43
Alignment explanation
Indices: 7458115--7458313 Score: 213
Period size: 43 Copynumber: 4.7 Consensus size: 43
7458105 AGTAATTTAC
* * *
7458115 TGGCACACGTAGTGTATCATCGGATAAATTGAA-ACAATTATAC
1 TGGCACACATAGTGCATCATCGGATAAATTGAAGA-AATTATAT
* * * * *
7458158 TAGTACAAATAGTGCATCATTGGATAAACTGAAGAAATTATAT
1 TGGCACACATAGTGCATCATCGGATAAATTGAAGAAATTATAT
* * * *
7458201 TGGCACGCGTAGTGCATCATCCGATAAATTGAAGCAATTATAT
1 TGGCACACATAGTGCATCATCGGATAAATTGAAGAAATTATAT
*
7458244 TGGCACACATAGTGCATCATCGGATAAATCGAAGAAATTATAT
1 TGGCACACATAGTGCATCATCGGATAAATTGAAGAAATTATAT
* * * * *
7458287 TTG-AAAAATAGTGTATCATCAGATAAA
1 TGGCACACATAGTGCATCATCGGATAAA
7458314 CAGAAGTATA
Statistics
Matches: 128, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
42 20 0.16
43 107 0.84
44 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (43 bp):
TGGCACACATAGTGCATCATCGGATAAATTGAAGAAATTATAT
Found at i:7458260 original size:86 final size:86
Alignment explanation
Indices: 7458101--7458287 Score: 252
Period size: 86 Copynumber: 2.2 Consensus size: 86
7458091 ATTGGACAAG
* * * * *
7458101 TCGAAGTAATT-TACTGGCACACGTAGTGTATCATCGGATAAATTGAAACAATTATACTAGTACA
1 TCGAAGAAATTATATTGGCACACGTAGTGCATCATCCGATAAATTGAAACAATTATACTAGCACA
*
7458165 AATAGTGCATCATTGGATAAA
66 AATAGTGCATCATCGGATAAA
* * * *
7458186 -CTGAAGAAATTATATTGGCACGCGTAGTGCATCATCCGATAAATTGAAGCAATTATATTGGCAC
1 TC-GAAGAAATTATATTGGCACACGTAGTGCATCATCCGATAAATTGAAACAATTATACTAGCAC
*
7458250 ACATAGTGCATCATCGGATAAA
65 AAATAGTGCATCATCGGATAAA
7458272 TCGAAGAAATTATATT
1 TCGAAGAAATTATATT
7458288 TGAAAAATAG
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
84 1 0.01
85 8 0.09
86 78 0.89
87 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (86 bp):
TCGAAGAAATTATATTGGCACACGTAGTGCATCATCCGATAAATTGAAACAATTATACTAGCACA
AATAGTGCATCATCGGATAAA
Found at i:7467188 original size:5 final size:5
Alignment explanation
Indices: 7467178--7467204 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7467168 TTATTTTAAG
7467178 TAAAT TAAAT TAAAT TAAAT TAAAT TA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TA
7467205 GGGAAGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAAAT
Done.