Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 24 of 161
Found at i:7827937 original size:47 final size:47
Alignment explanation
Indices: 7827859--7828050 Score: 276
Period size: 47 Copynumber: 4.1 Consensus size: 47
7827849 CCCTTCGGGA
* * * * * * *
7827859 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
7827906 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7827953 CTTATCACATATATACCCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7828000 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7828047 CTTA
1 CTTA
7828051 CTATCATTTC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7828697 original size:353 final size:353
Alignment explanation
Indices: 7828051--7828764 Score: 1403
Period size: 353 Copynumber: 2.0 Consensus size: 353
7828041 TTAGGCCTTA
7828051 CTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAATTCAAGTATGGGTT
1 CTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAATTCAAGTATGGGTT
7828116 TAATCAATACCTTATGAGCAACTAAAACAAGTTTATCAAGGTTCACAACATAATCTCAAATTCAG
66 TAATCAATACCTTATGAGCAACTAAAACAAGTTTATCAAGGTTCACAACATAATCTCAAATTCAG
7828181 CACAGGCTGTTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTAGAGCTACAAAACTCCAAA
131 CACAGGCTGTTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTAGAGCTACAAAACTCCAAA
7828246 TCACTTTCCGTTAATTTTTCCTGAATATAGACTCGTATATCTTCTATCCATAAAATTTCCAGAAT
196 TCACTTTCCGTTAATTTTTCCTGAATATAGACTCGTATATCTTCTATCCATAAAATTTCCAGAAT
7828311 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGTTTGACTAAT
261 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGTTTGACTAAT
*
7828376 CTGCCCACTCTTCACTACGAATCAAATT
326 CTGACCACTCTTCACTACGAATCAAATT
7828404 CTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAATTCAAGTATGGGTT
1 CTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAATTCAAGTATGGGTT
7828469 TAATCAATACCTTATGAGCAACTAAAACAAGTTTATCAAGGTTCACAACATAATCTCAAATTCAG
66 TAATCAATACCTTATGAGCAACTAAAACAAGTTTATCAAGGTTCACAACATAATCTCAAATTCAG
7828534 CACAGGCTGTTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTAGAGCTACAAAACTCCAAA
131 CACAGGCTGTTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTAGAGCTACAAAACTCCAAA
7828599 TCACTTTCCGTTAATTTTTCCTGAATATAGACTCGTATATCTTCTATCCATAAAATTTCCAGAAT
196 TCACTTTCCGTTAATTTTTCCTGAATATAGACTCGTATATCTTCTATCCATAAAATTTCCAGAAT
7828664 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGTTTGACTAAT
261 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGTTTGACTAAT
7828729 CTGACCACTCTTCACTACGAATCAAATT
326 CTGACCACTCTTCACTACGAATCAAATT
*
7828757 -TCTCATTT
1 CTATCATTT
7828765 TACTGAATTC
Statistics
Matches: 359, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
352 7 0.02
353 352 0.98
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (353 bp):
CTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAATTCAAGTATGGGTT
TAATCAATACCTTATGAGCAACTAAAACAAGTTTATCAAGGTTCACAACATAATCTCAAATTCAG
CACAGGCTGTTTTTCCTGAGCAATAGTCACTAAATTATTTATAACTAGAGCTACAAAACTCCAAA
TCACTTTCCGTTAATTTTTCCTGAATATAGACTCGTATATCTTCTATCCATAAAATTTCCAGAAT
TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGTTTGACTAAT
CTGACCACTCTTCACTACGAATCAAATT
Found at i:7835460 original size:41 final size:41
Alignment explanation
Indices: 7835406--7835494 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
7835396 ATGCTAAAAT
* *
7835406 AAATGAATGTTCAAAAATAATTTTTGTTCATAAGTTTGTTC
1 AAATGCATATTCAAAAATAATTTTTGTTCATAAGTTTGTTC
7835447 AAATGCATATTCAAAAATAATTTTTGTTCATAAGTTTGTTC
1 AAATGCATATTCAAAAATAATTTTTGTTCATAAGTTTGTTC
7835488 AAATGCA
1 AAATGCA
7835495 AGCATGATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (41 bp):
AAATGCATATTCAAAAATAATTTTTGTTCATAAGTTTGTTC
Found at i:7838100 original size:56 final size:56
Alignment explanation
Indices: 7838010--7838123 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
7838000 TCGAAAGGAC
*
7838010 TTAATTTTGTTTCCAAACTCATGAAAGATTGAGTTGTCATGGAAGTATTTTGAACA
1 TTAATTTTGTTTCCAAACTCATGAAAGATCGAGTTGTCATGGAAGTATTTTGAACA
*
7838066 TTAATTTTGTTTCTAAACTCATGAAAGATCGAGTTGTCATGGAAGTATTTTGAACA
1 TTAATTTTGTTTCCAAACTCATGAAAGATCGAGTTGTCATGGAAGTATTTTGAACA
7838122 TT
1 TT
7838124 GTTAAGCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (56 bp):
TTAATTTTGTTTCCAAACTCATGAAAGATCGAGTTGTCATGGAAGTATTTTGAACA
Found at i:7839588 original size:17 final size:17
Alignment explanation
Indices: 7839566--7839605 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7839556 GTATCATTCG
* *
7839566 ATTTTCAACATTAGTAC
1 ATTTTCAACATTAATAA
7839583 ATTTTCAACATTAATAA
1 ATTTTCAACATTAATAA
7839600 ATTTTC
1 ATTTTC
7839606 TTTTCCTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.45
Consensus pattern (17 bp):
ATTTTCAACATTAATAA
Found at i:7841942 original size:34 final size:34
Alignment explanation
Indices: 7841899--7841967 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7841889 GTAGTGATGT
7841899 TATTTATTATGAAACTGCTATGCTGCCTAATTTA
1 TATTTATTATGAAACTGCTATGCTGCCTAATTTA
7841933 TATTTATTATGAAACTGCTATGCTGCCTAATTTA
1 TATTTATTATGAAACTGCTATGCTGCCTAATTTA
7841967 T
1 T
7841968 CTCTTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (34 bp):
TATTTATTATGAAACTGCTATGCTGCCTAATTTA
Found at i:7843396 original size:23 final size:22
Alignment explanation
Indices: 7843370--7843415 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7843360 AGTGCTTAGA
*
7843370 TAATTTCCTAAAGGTCTTATGTT
1 TAATTCCCTAAA-GTCTTATGTT
* *
7843393 TAATTCCCTAGATTCTTATGTT
1 TAATTCCCTAAAGTCTTATGTT
7843415 T
1 T
7843416 TTTTATTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.24, C:0.15, G:0.11, T:0.50
Consensus pattern (22 bp):
TAATTCCCTAAAGTCTTATGTT
Found at i:7845253 original size:50 final size:50
Alignment explanation
Indices: 7845145--7845391 Score: 223
Period size: 50 Copynumber: 4.8 Consensus size: 50
7845135 ATTTGGGTAA
* *
7845145 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGGTTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
*
7845201 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * * * *
7845251 AGAGGTCCCCCGTAAGACCATATCTAGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
7845301 AGA-ACTCCCAAGTAAGACCATATCTGGGATATGGCATTGGCA--GTATAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* * *
7845350 AAACATCCCATGTTAA-ACCATGTCTGGGACATGGCTTTGGCA
1 AGAGATCCCATG-TAAGACCATGTCTGGGACATGGCATTGGCA
7845392 TGTTATTATC
Statistics
Matches: 166, Mismatches: 21, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
48 1 0.01
49 35 0.21
50 86 0.52
52 1 0.01
53 2 0.01
55 1 0.01
56 40 0.24
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:7853398 original size:46 final size:46
Alignment explanation
Indices: 7853345--7853435 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
7853335 TATATATACA
* * *
7853345 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * * *
7853391 CATCTCATACGCATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
7853436 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:7853852 original size:47 final size:47
Alignment explanation
Indices: 7853449--7853850 Score: 579
Period size: 47 Copynumber: 8.6 Consensus size: 47
7853439 CACATCCACG
* **
7853449 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * *
7853496 TTTATCACATTGGTCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
7853543 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
7853590 TTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
7853637 TTCGTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
7853684 TTCATCACGTTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
7853731 TTCATCACATTGGCCATTCGGTCTTACCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * * *
7853778 TTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
7853825 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
7853851 GCTCATGTAT
Statistics
Matches: 321, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 321 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:7853870 original size:141 final size:141
Alignment explanation
Indices: 7853415--7853881 Score: 585
Period size: 141 Copynumber: 3.3 Consensus size: 141
7853405 TTCGCATTAA
* ** * * * *
7853415 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** *
7853480 TGTATGCATGTTCACATTTATCACATTGGT-CATTCGGCCTTATCACATATATGCATGTTCATAT
66 CATATGCATGTTCACATTCATCACATT-GTCCATTCGGCCTTATCACATATATGCATGTTCATAT
*
7853544 TCTTCACATTGG
130 TCATCACATTGG
* **
7853556 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * * *
7853621 GATATACATGTTCATATTCGTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
7853686 CATCACGTTGG
131 CATCACATTGG
** * *
7853697 CCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTACCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * * * * *
7853762 CAAATGCATGTTCACATTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
7853827 CATCACATTTG
131 CATCACATTGG
* * ** *
7853838 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACAT
7853882 AAAATCCTAA
Statistics
Matches: 282, Mismatches: 43, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
140 1 0.00
141 281 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (141 bp):
CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
CATCACATTGG
Found at i:7863325 original size:11 final size:11
Alignment explanation
Indices: 7863311--7863402 Score: 70
Period size: 11 Copynumber: 8.7 Consensus size: 11
7863301 AAAAAAAGTC
7863311 TTTTAAAAATA
1 TTTTAAAAATA
7863322 TTTT--AAA-A
1 TTTTAAAAATA
*
7863330 --TTAAAAAAA
1 TTTTAAAAATA
*
7863339 GTT-AAAAAGTA
1 TTTTAAAAA-TA
7863350 TTTTAAAAATA
1 TTTTAAAAATA
* *
7863361 TATTAAAAAAA
1 TTTTAAAAATA
**
7863372 AGTTAAAAAGTA
1 TTTTAAAAA-TA
7863384 TTTTAAAAATA
1 TTTTAAAAATA
7863395 TTTTAAAA
1 TTTTAAAA
7863403 TTAAAAAATT
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
6 2 0.03
8 4 0.06
9 4 0.06
10 5 0.08
11 36 0.56
12 13 0.20
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:7863366 original size:23 final size:23
Alignment explanation
Indices: 7863340--7863402 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
7863330 TTAAAAAAAG
7863340 TTAAAAAGTATTTTAAAAA-TATA
1 TTAAAAA-TATTTTAAAAAGTATA
* ** *
7863363 TTAAAAAAAAGTTAAAAAGTATT
1 TTAAAAATATTTTAAAAAGTATA
7863386 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
7863403 TTAAAAAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
22 8 0.25
23 24 0.75
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TTAAAAATATTTTAAAAAGTATA
Found at i:7863375 original size:34 final size:34
Alignment explanation
Indices: 7863332--7863402 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
7863322 TTTTAAAATT
7863332 AAAAAAAGTTAAAAAGTATTTTAAAAATATATTA
1 AAAAAAAGTTAAAAAGTATTTTAAAAATATATTA
*
7863366 AAAAAAAGTTAAAAAGTATTTTAAAAATATTTTA
1 AAAAAAAGTTAAAAAGTATTTTAAAAATATATTA
7863400 AAA
1 AAA
7863403 TTAAAAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (34 bp):
AAAAAAAGTTAAAAAGTATTTTAAAAATATATTA
Found at i:7863411 original size:18 final size:17
Alignment explanation
Indices: 7863387--7863431 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7863377 AAAAGTATTT
*
7863387 TAAAAATATTTT-AAAAT
1 TAAAAA-ATTTTAAAAAA
7863404 TAAAAAATTTTAAAAAA
1 TAAAAAATTTTAAAAAA
7863421 TAAATAAATTT
1 TAAA-AAATTT
7863432 ATTATATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 5 0.20
17 14 0.56
18 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAAAATTTTAAAAAA
Found at i:7863413 original size:16 final size:17
Alignment explanation
Indices: 7863386--7863418 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7863376 AAAAAGTATT
7863386 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
7863403 TTAAAAA-ATTTTAAAA
1 TTAAAAATATTTTAAAA
7863419 AATAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:7863420 original size:11 final size:11
Alignment explanation
Indices: 7863340--7863402 Score: 72
Period size: 11 Copynumber: 5.5 Consensus size: 11
7863330 TTAAAAAAAG
7863340 TTAAAAAGTATT
1 TTAAAAA-TATT
*
7863352 TTAAAAATATA
1 TTAAAAATATT
* **
7863363 TTAAAAAAAAG
1 TTAAAAATATT
7863374 TTAAAAAGTATT
1 TTAAAAA-TATT
7863386 TTAAAAATATT
1 TTAAAAATATT
7863397 TTAAAA
1 TTAAAA
7863403 TTAAAAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
11 28 0.65
12 15 0.35
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:7866031 original size:22 final size:22
Alignment explanation
Indices: 7865988--7866030 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7865978 ATGCACCGAA
* *
7865988 ATAATCAAATCATACTTAAAAT
1 ATAATCAAATAAAACTTAAAAT
7866010 ATAATCAAAATAAAACTTAAA
1 ATAATC-AAATAAAACTTAAA
7866031 TTGGAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (22 bp):
ATAATCAAATAAAACTTAAAAT
Found at i:7873805 original size:18 final size:19
Alignment explanation
Indices: 7873778--7873814 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7873768 ATTAAGAAAA
*
7873778 AAATAGTAGTA-GAATTCT
1 AAATAATAGTAGGAATTCT
7873796 AAATAATAGTAGGAATTCT
1 AAATAATAGTAGGAATTCT
7873815 CTTATCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
AAATAATAGTAGGAATTCT
Found at i:7881067 original size:6 final size:6
Alignment explanation
Indices: 7881051--7881080 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7881041 ATGAGAGAAA
7881051 TTCTCTT TTCTTT TTCTTT TTCTTT TTCTT
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTT
7881081 CAAATCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTCTTT
Found at i:7883045 original size:15 final size:15
Alignment explanation
Indices: 7883025--7883062 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7883015 AGATCTCTTT
*
7883025 ATTTTCATCATTTTC
1 ATTTTCACCATTTTC
7883040 ATTTTCACCATTTTC
1 ATTTTCACCATTTTC
7883055 ATTTTCAC
1 ATTTTCAC
7883063 TTTTAGGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTCACCATTTTC
Found at i:7883266 original size:15 final size:15
Alignment explanation
Indices: 7883246--7883283 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7883236 AGATCTCTTT
*
7883246 ATTTTCATCATTTTC
1 ATTTTCACCATTTTC
7883261 ATTTTCACCATTTTC
1 ATTTTCACCATTTTC
7883276 ATTTTCAC
1 ATTTTCAC
7883284 TTTTAGGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTCACCATTTTC
Found at i:7883304 original size:221 final size:221
Alignment explanation
Indices: 7882915--7884013 Score: 2011
Period size: 221 Copynumber: 5.0 Consensus size: 221
7882905 AGGATCCTCG
* * * * * ** *
7882915 TTTTATTTTTCTATTTCAATAGAAAAATTATAAGCAGAATTGTTATCGACAACTAT-ATTTTTTC
1 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGA-TTTTCC
* * * * *
7882979 GATTCCATCTTTATTTGGTATTGATATAATATATTGAGATCTCTTTATTTTCATCATTTTCATTT
65 AATTCTATCTTT-TCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTT
7883044 TCACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTC
129 TCACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTC
7883109 ATGGGTCTCTTCAGGAACCCCAATCTTA
194 ATGGGTCTCTTCAGGAACCCCAATCTTA
7883137 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
1 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
7883202 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
66 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
7883267 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
131 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
7883332 GGGTCTCTTCAGGAACCCCAATCTTA
196 GGGTCTCTTCAGGAACCCCAATCTTA
7883358 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
1 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
7883423 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
66 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
7883488 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
131 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
7883553 GGGTCTCTTCAGGAACCCCAATCTTA
196 GGGTCTCTTCAGGAACCCCAATCTTA
7883579 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
1 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
7883644 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
66 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
7883709 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
131 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
7883774 GGGTCTCTTCAGGAACCCCAATCTTA
196 GGGTCTCTTCAGGAACCCCAATCTTA
7883800 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
1 TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
7883865 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
66 ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
** * *
7883930 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTTTTGAGGTTTATAATTTGTTATGTCAT
131 ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
*
7883995 GGGTCTCTTTAGGAACCCC
196 GGGTCTCTTCAGGAACCCC
7884014 CGCTTCCACT
Statistics
Matches: 858, Mismatches: 18, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
221 793 0.92
222 64 0.07
223 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.46
Consensus pattern (221 bp):
TTTTCTTTTTCTATTTCAAGAGCAATATTATAAGCAGAATTATTGCCGACAACTATGATTTTCCA
ATTCTATCTTTTCTGGTATTGACATAATTTATTGAGATCTCTTTATTTTCATCATTTTCATTTTC
ACCATTTTCATTTTCACTTTTAGGTACCTGAATCTCTTCATGAGGTTGATAATTTTTTATGTCAT
GGGTCTCTTCAGGAACCCCAATCTTA
Found at i:7883487 original size:15 final size:15
Alignment explanation
Indices: 7883467--7883504 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7883457 AGATCTCTTT
*
7883467 ATTTTCATCATTTTC
1 ATTTTCACCATTTTC
7883482 ATTTTCACCATTTTC
1 ATTTTCACCATTTTC
7883497 ATTTTCAC
1 ATTTTCAC
7883505 TTTTAGGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTCACCATTTTC
Found at i:7883708 original size:15 final size:15
Alignment explanation
Indices: 7883688--7883725 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7883678 AGATCTCTTT
*
7883688 ATTTTCATCATTTTC
1 ATTTTCACCATTTTC
7883703 ATTTTCACCATTTTC
1 ATTTTCACCATTTTC
7883718 ATTTTCAC
1 ATTTTCAC
7883726 TTTTAGGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTCACCATTTTC
Found at i:7883929 original size:15 final size:15
Alignment explanation
Indices: 7883909--7883946 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7883899 AGATCTCTTT
*
7883909 ATTTTCATCATTTTC
1 ATTTTCACCATTTTC
7883924 ATTTTCACCATTTTC
1 ATTTTCACCATTTTC
7883939 ATTTTCAC
1 ATTTTCAC
7883947 TTTTAGGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTCACCATTTTC
Found at i:7891077 original size:50 final size:50
Alignment explanation
Indices: 7891008--7891131 Score: 158
Period size: 50 Copynumber: 2.5 Consensus size: 50
7890998 TATTGAGGTT
* * *
7891008 ATGAAAGGTCCCACGTAAGACCATGTATGGGACATAGCATTGGCATCGAG
1 ATGAAAGGTCCCACATAAGACCATGTATGGGACATAGCATGGGCACCGAG
* * * *
7891058 ATGAGAGGTCCCCCATAAGACCATGTTTGGGACATAGCATGGGCACCGAT
1 ATGAAAGGTCCCACATAAGACCATGTATGGGACATAGCATGGGCACCGAG
** *
7891108 ATGAAAACTCCCATATAAGACCAT
1 ATGAAAGGTCCCACATAAGACCAT
7891132 TTCTAGGATA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (50 bp):
ATGAAAGGTCCCACATAAGACCATGTATGGGACATAGCATGGGCACCGAG
Found at i:7891398 original size:20 final size:20
Alignment explanation
Indices: 7891373--7891411 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7891363 TGAGTTATTT
7891373 AAGTAATCA-AGTAAGTAAAC
1 AAGTAA-CAGAGTAAGTAAAC
*
7891393 AAGTAAGAGAGTAAGTAAA
1 AAGTAACAGAGTAAGTAAA
7891412 AAAGAAGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (20 bp):
AAGTAACAGAGTAAGTAAAC
Found at i:7894682 original size:41 final size:41
Alignment explanation
Indices: 7894619--7894763 Score: 182
Period size: 41 Copynumber: 3.5 Consensus size: 41
7894609 CGGTGAATTA
*
7894619 TAGCAGGCTTCATGCCGATGTACCATATCAGGCTTTATGCC
1 TAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTATGCC
* *
7894660 TAGCAGGTTTCATGTCGGTGTACCATATCAGGCTTTATGCC
1 TAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTATGCC
* * * ** *
7894701 TAGTAGGCTTCGTGCCGGTGTATCATATTTGGCTTTGTGCC
1 TAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTATGCC
* * *
7894742 TAGAAGGCTTTATGCCAGTGTA
1 TAGCAGGCTTCATGCCGGTGTA
7894764 TTTTAATAAG
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 89 1.00
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (41 bp):
TAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTATGCC
Found at i:7910023 original size:13 final size:13
Alignment explanation
Indices: 7910005--7910029 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7909995 GATTGGCTTT
7910005 TTTTTTATTTTTA
1 TTTTTTATTTTTA
7910018 TTTTTTATTTTT
1 TTTTTTATTTTT
7910030 GGGTGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:7922341 original size:45 final size:45
Alignment explanation
Indices: 7922246--7922465 Score: 284
Period size: 45 Copynumber: 4.9 Consensus size: 45
7922236 TCGTTACACA
* **
7922246 GTGG-ATCAGCACATAGC-ACCA-CTCTTATAATCAATTATATTCG
1 GTGGAATCAGCACATAGCAACCACCT-TTATAATCAATGATACCCG
* * ** ** *
7922289 GTAGAATCAGCAAATAGCAACCACCTTTATTTTCAATGATTTCTG
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCCG
* *
7922334 GTGGAATCAGCACATAGCAACCTCCTTTATAATCAATGGTACCCG
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCCG
* *
7922379 GTGGAATCAACACATAGCAACCACCTTTATAATCAATGGTACCCG
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCCG
7922424 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATAC
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATAC
7922466 TCAATACACG
Statistics
Matches: 153, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 3 0.02
44 12 0.08
45 136 0.89
46 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCCG
Found at i:7935456 original size:12 final size:12
Alignment explanation
Indices: 7935431--7935469 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7935421 ACTCGCTTCT
* *
7935431 TTACTTACTCAC
1 TTACTTGCTTAC
*
7935443 TTACTTGTTTAC
1 TTACTTGCTTAC
7935455 TTACTTGCTTAC
1 TTACTTGCTTAC
7935467 TTA
1 TTA
7935470 ATTAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:7935820 original size:50 final size:53
Alignment explanation
Indices: 7935773--7935905 Score: 175
Period size: 50 Copynumber: 2.5 Consensus size: 53
7935763 ATCGGTGCTC
7935773 ATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCT-T-ATCT-TGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGG-GGACCTCTATAATCTATGGTGCCA
* * *
7935823 ACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT-ATAATCT--ATGGTGCCA
7935879 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
7935906 TACGATCTCT
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
50 33 0.46
51 1 0.01
52 1 0.01
53 4 0.06
56 33 0.46
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (53 bp):
ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTATAATCTATGGTGCCA
Found at i:7935885 original size:56 final size:51
Alignment explanation
Indices: 7935773--7935906 Score: 173
Period size: 56 Copynumber: 2.5 Consensus size: 51
7935763 ATCGGTGCTC
* *
7935773 ATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTTATCTTGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTTATCTTGATGCCA
*
7935823 ACGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATAATCTCAATGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCT--T-ATCT---TGATGCCA
7935879 ATGCCATGTCCCAGACATGGTCTTACAT
1 ATGCCATGTCCCAGACATGGTCTTACAT
7935907 ACGATCTCTT
Statistics
Matches: 73, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
50 33 0.45
51 1 0.01
52 1 0.01
53 4 0.05
56 34 0.47
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (51 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTTATCTTGATGCCA
Found at i:7937025 original size:37 final size:37
Alignment explanation
Indices: 7936984--7937059 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
7936974 GCCCAAACGT
7936984 TGAAATTTTCGAACGAAATTTTCACAAAATCATTTTG
1 TGAAATTTTCGAACGAAATTTTCACAAAATCATTTTG
*
7937021 TGAAATTTTCGAACGAAATTTTTACAAAATCATTTTG
1 TGAAATTTTCGAACGAAATTTTCACAAAATCATTTTG
7937058 TG
1 TG
7937060 GTCTCGAAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (37 bp):
TGAAATTTTCGAACGAAATTTTCACAAAATCATTTTG
Found at i:7945280 original size:24 final size:26
Alignment explanation
Indices: 7945253--7945306 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 26
7945243 ATATTTTTTC
*
7945253 ATATACATATATAT-TGTTTAGTT-T
1 ATATACATATATATCTATTTAGTTAT
* *
7945277 ATATATATTTATATCTATTTAGTTAT
1 ATATACATATATATCTATTTAGTTAT
7945303 ATAT
1 ATAT
7945307 TTGTGTATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.48
25 8 0.32
26 5 0.20
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (26 bp):
ATATACATATATATCTATTTAGTTAT
Found at i:7953328 original size:24 final size:24
Alignment explanation
Indices: 7953281--7953327 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7953271 TTAGAAATTT
* *
7953281 TAAAAATATTTGAGAAAATGAAAA
1 TAAAAATATGTGAGAAAATAAAAA
7953305 TAAAAATATGTGA-AAAATAAAAA
1 TAAAAATATGTGAGAAAATAAAAA
7953328 ACAATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (24 bp):
TAAAAATATGTGAGAAAATAAAAA
Found at i:7953598 original size:27 final size:27
Alignment explanation
Indices: 7953562--7953616 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
7953552 AAGAGTTACC
*
7953562 AAATATTTTTTCATTTTT-TCTTATTAA
1 AAATAATTTTTCATTTTTAT-TTATTAA
*
7953589 AAATAATTTTTTATTTTTATTTATTAA
1 AAATAATTTTTCATTTTTATTTATTAA
7953616 A
1 A
7953617 CGTGTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (27 bp):
AAATAATTTTTCATTTTTATTTATTAA
Found at i:7953674 original size:27 final size:26
Alignment explanation
Indices: 7953630--7953681 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
7953620 GTTTTTTTTA
*
7953630 ATTTTTAAAAATAAAAAATGAAAATT
1 ATTTTTAAAAATAAAAAAAGAAAATT
* *
7953656 ATTTTCTAGAAATGAAAAAAGAAAAT
1 ATTTT-TAAAAATAAAAAAAGAAAAT
7953682 ACTTTCAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (26 bp):
ATTTTTAAAAATAAAAAAAGAAAATT
Found at i:7953687 original size:26 final size:26
Alignment explanation
Indices: 7953638--7953692 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
7953628 TAATTTTTAA
*
7953638 AAATAAAAAATGAAAATTATTTTCTAG
1 AAATAAAAAATGAAAATTACTTTC-AG
7953665 AAATGAAAAAA-GAAAA-TACTTTCAG
1 AAAT-AAAAAATGAAAATTACTTTCAG
7953690 AAA
1 AAA
7953693 CCACATCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 5 0.19
26 6 0.23
27 9 0.35
28 6 0.23
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.25
Consensus pattern (26 bp):
AAATAAAAAATGAAAATTACTTTCAG
Found at i:7956708 original size:64 final size:64
Alignment explanation
Indices: 7956594--7956714 Score: 170
Period size: 64 Copynumber: 1.9 Consensus size: 64
7956584 TCCTGATCAG
* * * * ** *
7956594 TATTGATCCTGCATGTGTTGCAGATATACCACAGCTTTTTATGAGTGTCCTGTTATATGATCGA
1 TATTGATCCTGCATATATTGCAGACATACCACAGCTCTTTATGAACGTCCTGATATATGATCGA
*
7956658 TATTGATCCTGCATATATTGCAGACATACCGCAGCTCTTTATGAACGTCCTGATATA
1 TATTGATCCTGCATATATTGCAGACATACCACAGCTCTTTATGAACGTCCTGATATA
7956715 GGCTCTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 49 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (64 bp):
TATTGATCCTGCATATATTGCAGACATACCACAGCTCTTTATGAACGTCCTGATATATGATCGA
Found at i:7956733 original size:25 final size:23
Alignment explanation
Indices: 7956690--7956761 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
7956680 GACATACCGC
*
7956690 AGCTCTTTATGAACGTCCTGATAT
1 AGCTCTTT-TGAACTTCCTGATAT
*
7956714 AGGCTCTTTGTGAGCTTCCTGATAT
1 A-GCTCTTT-TGAACTTCCTGATAT
* *
7956739 AACTCGTTTGAACTTCCTGATAT
1 AGCTCTTTTGAACTTCCTGATAT
7956762 TTAGCTATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 14 0.34
24 6 0.15
25 21 0.51
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (23 bp):
AGCTCTTTTGAACTTCCTGATAT
Found at i:7956758 original size:23 final size:25
Alignment explanation
Indices: 7956699--7956761 Score: 76
Period size: 23 Copynumber: 2.6 Consensus size: 25
7956689 CAGCTCTTTA
* * *
7956699 TGAACGTCCTGATATAGGCTCTTTG
1 TGAACTTCCTGATATAGACTCGTTG
*
7956724 TGAGCTTCCTGATATA-ACTCGTT-
1 TGAACTTCCTGATATAGACTCGTTG
7956747 TGAACTTCCTGATAT
1 TGAACTTCCTGATAT
7956762 TTAGCTATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 14 0.42
24 5 0.15
25 14 0.42
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (25 bp):
TGAACTTCCTGATATAGACTCGTTG
Found at i:7959872 original size:20 final size:20
Alignment explanation
Indices: 7959835--7959873 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7959825 AAACAAAATC
*
7959835 AAAGAAAGAAGAAAAAATAT
1 AAAGAAAGAAAAAAAAATAT
7959855 AAAGAAA-AAAAAAGAAATA
1 AAAGAAAGAAAAAA-AAATA
7959874 AGAGGAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (20 bp):
AAAGAAAGAAAAAAAAATAT
Found at i:7961311 original size:20 final size:19
Alignment explanation
Indices: 7961286--7961345 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
7961276 TTCACTTATC
7961286 TTTTTAATTATATT-TTTTAA
1 TTTTT-ATTA-ATTATTTTAA
*
7961306 TTTTTATTAATTATTTTTA
1 TTTTTATTAATTATTTTAA
*
7961325 TTTTATGTTTAATTATTTTAA
1 TTTT-T-ATTAATTATTTTAA
7961346 AATATGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 3 0.09
19 13 0.38
20 6 0.18
21 12 0.35
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTATTAATTATTTTAA
Found at i:7964746 original size:14 final size:14
Alignment explanation
Indices: 7964727--7964756 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7964717 CTACCTCCGT
7964727 CCTCCACCGATCCA
1 CCTCCACCGATCCA
*
7964741 CCTCCACCGGTCCA
1 CCTCCACCGATCCA
7964755 CC
1 CC
7964757 CCCAGTCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.60, G:0.10, T:0.13
Consensus pattern (14 bp):
CCTCCACCGATCCA
Found at i:7965059 original size:14 final size:14
Alignment explanation
Indices: 7965036--7965079 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7965026 CTCCACCGAG
7965036 CACCGATCCACCTC
1 CACCGATCCACCTC
*
7965050 CACTGATCCACCTC
1 CACCGATCCACCTC
* *
7965064 TACCGGTCCACCTC
1 CACCGATCCACCTC
7965078 CA
1 CA
7965080 GTCCTGCTCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.20, C:0.52, G:0.09, T:0.18
Consensus pattern (14 bp):
CACCGATCCACCTC
Found at i:7965403 original size:44 final size:44
Alignment explanation
Indices: 7965350--7965455 Score: 176
Period size: 44 Copynumber: 2.4 Consensus size: 44
7965340 AAGAAGTAGA
*
7965350 GATATTGAGCATGTTTTGGGATGACTCGGTATTTTGAGTTTAGGT
1 GATA-TGAGCATGTTTTGGGATGACTCAGTATTTTGAGTTTAGGT
7965395 GATATGAGCATGTTTTGGGATGACTCAGTATTTTGAGTTTAGGT
1 GATATGAGCATGTTTTGGGATGACTCAGTATTTTGAGTTTAGGT
* *
7965439 GATTTGAGCATTTTTTG
1 GATATGAGCATGTTTTG
7965456 AAAGCCTACA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
44 54 0.93
45 4 0.07
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (44 bp):
GATATGAGCATGTTTTGGGATGACTCAGTATTTTGAGTTTAGGT
Found at i:7966769 original size:37 final size:37
Alignment explanation
Indices: 7966728--7966799 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
7966718 GCTGGTCATA
7966728 ATTAATTAAATAGTTAGTGAATTCTAATCTAATGGTG
1 ATTAATTAAATAGTTAGTGAATTCTAATCTAATGGTG
7966765 ATTAATTAAATAGTTAGTGAATTCTAATCTAATGG
1 ATTAATTAAATAGTTAGTGAATTCTAATCTAATGG
7966800 AAAAATAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.40
Consensus pattern (37 bp):
ATTAATTAAATAGTTAGTGAATTCTAATCTAATGGTG
Found at i:7973539 original size:3 final size:3
Alignment explanation
Indices: 7973531--7973557 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7973521 ATGTATTGTT
7973531 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
7973558 AAAATTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7973577 original size:19 final size:19
Alignment explanation
Indices: 7973555--7973592 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7973545 ATTATTATTA
7973555 TTAAAAATTACTTTCGTTC
1 TTAAAAATTACTTTCGTTC
7973574 TTAAAAATTACTTTCGTTC
1 TTAAAAATTACTTTCGTTC
7973593 CACTATGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAAAAATTACTTTCGTTC
Found at i:7973862 original size:14 final size:14
Alignment explanation
Indices: 7973819--7973866 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7973809 TTTTTTAAAA
7973819 TTAAAAATATATTTT
1 TTAAAAAT-TATTTT
* *
7973834 TT-ATAATTTTATTT
1 TTAAAAATTAT-TTT
7973848 TTAAAAATTATTTT
1 TTAAAAATTATTTT
7973862 TTAAA
1 TTAAA
7973867 TTTTTAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
13 2 0.07
14 17 0.63
15 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTAAAAATTATTTT
Found at i:7973878 original size:29 final size:30
Alignment explanation
Indices: 7973805--7973882 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
7973795 TAGTAATTAA
* *
7973805 TTAATTTTTTAAA-ATTAAAAATATATTTT
1 TTAAATTTTTAAATTTTAAAAATATATTTT
*
7973834 TTATAA-TTTT-ATTTTTAAAAAT-TATTTT
1 TTA-AATTTTTAAATTTTAAAAATATATTTT
7973862 TTAAATTTTTAAATTTTAAAA
1 TTAAATTTTTAAATTTTAAAA
7973883 CTAATTAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.05
28 14 0.34
29 24 0.59
30 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTAAATTTTTAAATTTTAAAAATATATTTT
Found at i:7988494 original size:22 final size:23
Alignment explanation
Indices: 7988460--7988503 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
7988450 GCGATGAGGT
**
7988460 TATCTTGTGAATACGTT-AAATC
1 TATCTTGAAAATACGTTGAAATC
*
7988482 TATCTTGAAAATATGTTGAAAT
1 TATCTTGAAAATACGTTGAAAT
7988504 GGATTGGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (23 bp):
TATCTTGAAAATACGTTGAAATC
Found at i:7996463 original size:31 final size:30
Alignment explanation
Indices: 7996428--7996485 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
7996418 ATTTTATAAT
7996428 TTTCTCTTTA-GTTTTAGACTTTAGTTTTTCC
1 TTTCT-TTTAGGTTTTAGACTTTA-TTTTTCC
7996459 TTTCTTTTAGGTTTTAGACTTTATTTT
1 TTTCTTTTAGGTTTTAGACTTTATTTT
7996486 CATTCTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.64
Consensus pattern (30 bp):
TTTCTTTTAGGTTTTAGACTTTATTTTTCC
Found at i:7997827 original size:16 final size:16
Alignment explanation
Indices: 7997806--7997839 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7997796 GGTCAGCCTC
*
7997806 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
7997822 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
7997838 TC
1 TC
7997840 CTCTCCGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:8011126 original size:50 final size:50
Alignment explanation
Indices: 8011019--8011303 Score: 336
Period size: 50 Copynumber: 5.6 Consensus size: 50
8011009 ATTTGGGTAA
* * * *
8011019 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATG
* * *
8011075 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
8011125 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
8011175 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * ** *
8011225 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
8011275 AGAACTCTCATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
8011304 TATGACATTG
Statistics
Matches: 203, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
50 163 0.80
53 3 0.01
56 37 0.18
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:8013612 original size:36 final size:36
Alignment explanation
Indices: 8013565--8013638 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
8013555 ACTAGTAGGA
8013565 TTAGGAGTAGACGAATTTAGGAAAATTGAATGATTC
1 TTAGGAGTAGACGAATTTAGGAAAATTGAATGATTC
8013601 TTAGGAGTAGACGAATTTAGGAAAATTGAATGATTC
1 TTAGGAGTAGACGAATTTAGGAAAATTGAATGATTC
8013637 TT
1 TT
8013639 TCTTTATTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (36 bp):
TTAGGAGTAGACGAATTTAGGAAAATTGAATGATTC
Found at i:8022124 original size:14 final size:13
Alignment explanation
Indices: 8022105--8022161 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 13
8022095 ATTTAGCCGA
8022105 ATATGCATCACCAC
1 ATATGCATCA-CAC
8022119 ATATGCAT-ACAC
1 ATATGCATCACAC
*
8022131 ATAGTTACATCATCAC
1 ATA--TGCATCA-CAC
8022147 ATATGCAT-ACAC
1 ATATGCATCACAC
8022159 ATA
1 ATA
8022162 GCTCACATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 12 0.32
13 2 0.05
14 16 0.43
15 1 0.03
16 6 0.16
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.26
Consensus pattern (13 bp):
ATATGCATCACAC
Found at i:8025011 original size:18 final size:18
Alignment explanation
Indices: 8024977--8025050 Score: 78
Period size: 19 Copynumber: 3.9 Consensus size: 18
8024967 AATGATAAAA
8024977 ATAAAAATCAATAAAATTT
1 ATAAAAAT-AATAAAATTT
*
8024996 ATAAAAATAATTAAATTTT
1 ATAAAAATAA-TAAAATTT
8025015 AATAAAAA-ATATAAAATTT
1 -ATAAAAATA-ATAAAATTT
*
8025034 ATTAAAAATTATAAAAT
1 A-TAAAAATAATAAAAT
8025051 AAATATAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
18 3 0.06
19 36 0.77
20 8 0.17
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAAAAATAATAAAATTT
Found at i:8025057 original size:30 final size:28
Alignment explanation
Indices: 8025018--8025158 Score: 117
Period size: 30 Copynumber: 4.8 Consensus size: 28
8025008 AAATTTTAAT
8025018 AAAAAATATAAAATTTATTAAAAATTATA
1 AAAAAATATAAAATTTA-TAAAAATTATA
*
8025047 AAATAAATATAAAATTGTA-AAACAATTATT
1 AAA-AAATATAAAATT-TATAAA-AATTATA
**
8025077 AAAACTTGA-AAAATTTTATAAAAATTATA
1 AAAAAAT-ATAAAA-TTTATAAAAATTATA
* *
8025106 AAAAAATTATAAAATATATAGAAA-TATA
1 AAAAAA-TATAAAATTTATAAAAATTATA
8025134 GAAATAAATTATAAAATTTTATAAA
1 -AAA-AAA-TATAAAA-TTTATAAA
8025159 GTCATAAGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
28 4 0.04
29 36 0.40
30 43 0.47
31 8 0.09
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (28 bp):
AAAAAATATAAAATTTATAAAAATTATA
Found at i:8025059 original size:20 final size:20
Alignment explanation
Indices: 8025016--8025222 Score: 71
Period size: 19 Copynumber: 10.6 Consensus size: 20
8025006 TTAAATTTTA
* **
8025016 ATAAAAAATATAAAATTTAT
1 ATAAAAATTATAAAATAAAT
8025036 -TAAAAATTATAAAATAAAT
1 ATAAAAATTATAAAATAAAT
* * *
8025055 AT-AAAATTGTAAAACAATT
1 ATAAAAATTATAAAATAAAT
* **
8025074 ATTAAAACTTGA-AAAAT-TTT
1 A-TAAAAATT-ATAAAATAAAT
8025094 ATAAAAATTATAAAA-AAAT
1 ATAAAAATTATAAAATAAAT
* *
8025113 -TATAAAATATATAGAAATATAG
1 ATA-AAAAT-TATA-AAATAAAT
**
8025135 A-AATAAATTATAAAAT-TTT
1 ATAA-AAATTATAAAATAAAT
* * *
8025154 AT-AAAGTCATAAGAA-AATT
1 ATAAAAATTATAA-AATAAAT
* *
8025173 ATAAAAAATGTAAAA-AAAT
1 ATAAAAATTATAAAATAAAT
8025192 AT-AAAATTCATAAAA-AAATT
1 ATAAAAATT-ATAAAATAAA-T
*
8025212 ATAAAAGTTAT
1 ATAAAAATTAT
8025223 TGTACCAAAA
Statistics
Matches: 140, Mismatches: 28, Indels: 38
0.68 0.14 0.18
Matches are distributed among these distances:
18 15 0.11
19 72 0.51
20 24 0.17
21 22 0.16
22 7 0.05
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (20 bp):
ATAAAAATTATAAAATAAAT
Found at i:8025101 original size:11 final size:11
Alignment explanation
Indices: 8025085--8025119 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8025075 TTAAAACTTG
* *
8025085 AAAAATTTTAT
1 AAAAATTATAA
8025096 AAAAATTATAA
1 AAAAATTATAA
8025107 AAAAATTATAA
1 AAAAATTATAA
8025118 AA
1 AA
8025120 TATATAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:8025208 original size:11 final size:10
Alignment explanation
Indices: 8025016--8025217 Score: 81
Period size: 10 Copynumber: 20.6 Consensus size: 10
8025006 TTAAATTTTA
8025016 ATAAAAAA-T
1 ATAAAAAATT
*
8025025 AT-AAAATTT
1 ATAAAAAATT
*
8025034 ATTAAAAATT
1 ATAAAAAATT
8025044 ATAAAATAA--
1 ATAAAA-AATT
*
8025053 ATATAAAATT
1 ATAAAAAATT
*
8025063 GTAAAACAATT
1 ATAAAA-AATT
* *
8025074 AT-TAAAACT
1 ATAAAAAATT
*
8025083 -TGAAAAATT
1 ATAAAAAATT
*
8025092 TTATAAAAATT
1 ATA-AAAAATT
8025103 ATAAAAAAATT
1 AT-AAAAAATT
*
8025114 ATAAAATA-T
1 ATAAAAAATT
*
8025123 AT-AGAAATAT
1 ATAAAAAAT-T
*
8025133 AGAAATAAATT
1 ATAAA-AAATT
8025144 AT--AAAATT
1 ATAAAAAATT
* * * *
8025152 TTATAAAGTC
1 ATAAAAAATT
8025162 ATAAGAAAATT
1 ATAA-AAAATT
8025173 ATAAAAAATGT
1 ATAAAAAAT-T
8025184 A-AAAAAA-T
1 ATAAAAAATT
8025192 AT--AAAATT
1 ATAAAAAATT
8025200 CATAAAAAAATT
1 -AT-AAAAAATT
8025212 ATAAAA
1 ATAAAA
8025218 GTTATTGTAC
Statistics
Matches: 143, Mismatches: 26, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
7 4 0.03
8 19 0.13
9 24 0.17
10 46 0.32
11 39 0.27
12 11 0.08
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.31
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:8026227 original size:42 final size:41
Alignment explanation
Indices: 8026163--8026252 Score: 153
Period size: 42 Copynumber: 2.2 Consensus size: 41
8026153 TGAATCTTAG
*
8026163 TTTCATTTGGTATATAACTATACCACTAATTAAGCGATTTTT
1 TTTCCTTTGGTATATAACTATACCACTAATTAAGCGA-TTTT
*
8026205 TTTCCTTTGGTATATAACTATACCACTAATTAAGTGATTTT
1 TTTCCTTTGGTATATAACTATACCACTAATTAAGCGATTTT
8026246 TTTCCTT
1 TTTCCTT
8026253 CATAATTAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 11 0.24
42 35 0.76
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.48
Consensus pattern (41 bp):
TTTCCTTTGGTATATAACTATACCACTAATTAAGCGATTTT
Found at i:8026658 original size:24 final size:22
Alignment explanation
Indices: 8026629--8026694 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
8026619 ATACAATATT
8026629 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
8026651 TATGATAT-ATA--CAATCTTAGA
1 -A-GATATGATATGCAATCTTAGA
* *
8026672 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
8026695 GATTTAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
19 5 0.14
20 2 0.06
21 11 0.31
23 13 0.36
24 5 0.14
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:8026665 original size:21 final size:19
Alignment explanation
Indices: 8026616--8026671 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
8026606 AATTTTTGAG
*
8026616 GATATACAATATTAGATAT
1 GATATACAATCTTAGATAT
*
8026635 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
8026654 GATATATACAATCTTAGA
1 G--ATATACAATCTTAGA
8026672 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 18 0.56
21 14 0.44
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:8033520 original size:132 final size:131
Alignment explanation
Indices: 8033283--8034835 Score: 1789
Period size: 132 Copynumber: 11.7 Consensus size: 131
8033273 ACCGGTGAAA
*
8033283 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
8033348 GCAGTAGTGGAGCAGATCGAAAGCGGCAAATCTTATCTTTCCAAGGTAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATC-AAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8033413 GC
130 GC
8033415 CACCAAGCCTTGTCTCCCT-AGGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
1 CACCAAGCCTTGTCTCCCTGA-GCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
** * *
8033479 AGCAGTAGTGGAGCAGATCGAAAACATCAAATCTTATCTTTCCAAGACAGTGGGAAGCAAATTTA
65 AGCAGTAGTGGAGCAGATC-AAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
8033544 AGC
129 AGC
* * * *
8033547 CACCAAGCCTTGTCTCCTTGAGCAGCAACGGAGTAGGTTGAAGATTGTAAATCATATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * * *
8033612 GCAGAAGTGGAGCATATCGAAGACGGCAAATCCTATCTTTCTAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATC-AAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8033677 GC
130 GC
* *
8033679 CACCAAGCCTTGTCTCCCTGAACAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
8033744 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
66 GCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8033809 GC
130 GC
* * * * * *
8033811 CGCCAAGCCTTGACTCCCTGA-AAGGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCTTA
1 CACCAAGCCTTGTCTCCCTGAGCA-GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
* * * *
8033875 AGCAGTAGTGGAGCACATCAAAGACGGTAAATCTTATCTTTCCGAGATAGTGGGAAGTAGATTTA
65 AGCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
*
8033940 AGT
129 AGC
* ** * * *
8033943 CGCCAAGCCTTGTCTCCCTGAAAAGTAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * * *
8034008 ACAGTAGTGAAGCAGAACGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATC-AAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8034073 GC
130 GC
8034075 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
8034140 GTAGTAGTAGAGCAGATCAAAGCCGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8034205 GC
130 GC
* * ** * * *
8034207 CACTAAGCCTTGTCTCCCTAAAAAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
8034272 GTAGTAGTAGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
66 GCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
8034337 GC
130 GC
* * * *
8034339 CGCCAAGCCTTGTCTCCTTGA-AAGGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTA
1 CACCAAGCCTTGTCTCCCTGAGCA-GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
* * * *
8034403 AGCAGTAGTGAAGCAGATCAAAGACGGCAAATCATATCCTTCCAAGATAGTGGGAAGCATATTTA
65 AGCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
8034468 AGC
129 AGC
* * * ** * * * * ** * * * *
8034471 CACCAAGGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCC
1 CACCAA-G-CCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATC-TCCC
* ** ** ** * * *
8034536 -AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTC--ACCATTAGCAGTAG-CGG-AG
63 TAAGCAGTAGT-GG-AGCAGA-TCAAAACGGCAAATCTTATCTTTCCA--AG-A-TAGTGGGAAG
* * *
8034594 TAG-GTTAA-A
121 CAGATTTAAGC
* *** ** * * *
8034603 AATTGTAGATTTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTC
1 CA-CCAAG-CCTTGTCTCCCT--G-AGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTC
* * * * *
8034668 CCTAAGCAGTTGTGAAGCAGATCAAAGATGACAAATCTAATCTTTCCAAGATAGTGGGAAGCAGA
61 CCTAAGCAGTAGTGGAGCAGATCAAA-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGA
8034733 TTTAAGC
125 TTTAAGC
* * *
8034740 CACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAATACGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
8034805 GCAGTAGTGGAGCAGATCAAAGATGGCAAAT
66 GCAGTAGTGGAGCAGATCAAA-ACGGCAAAT
8034836 GATCTGATCT
Statistics
Matches: 1210, Mismatches: 178, Indels: 66
0.83 0.12 0.05
Matches are distributed among these distances:
131 8 0.01
132 1036 0.86
133 16 0.01
134 64 0.05
135 68 0.06
136 11 0.01
137 7 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (131 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
C
Found at i:8033775 original size:44 final size:44
Alignment explanation
Indices: 8033295--8034868 Score: 175
Period size: 44 Copynumber: 35.6 Consensus size: 44
8033285 CCAAGCCTTG
* * * * * ** *
8033295 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* *
8033339 TCTCCCTAAGCAGTAGTGGAGCAGATCGAA-AGCGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CAGCAAATCTTA
* * * * ** *
8033383 TCTTTCC-AAG--GTAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAAATCTTA
* * * * * ** * *
8033427 TCTCCCTAGGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * *
8033471 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACATCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * * ** *
8033515 TCTTTCC-AAGACAGT-G-GGAAGCAAATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAG-CAGTAGTGG-AGCAGATTGAAGACAGCAAATCTTA
* * * ** * * ** * *
8033559 TCTCCTTGAGCAGCAACGGAGTAGGTTGAAGATTGTAAATCATA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * *
8033603 TCTCCCTAAGCAGAAGTGGAGCATATCGAAGACGGCAAATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
** * * * ** *
8033647 TCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAAATCTTA
* * * * ** *
8033691 TCTCCCTGAA-CAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTA
1 TCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
** *
8033735 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * **
8033779 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAG-CCGCCAAGCCTTGA
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAG-CAAATCTT-A
* * * ** * *
8033824 -CTCCCTGAA--AGGCAGTGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCT-AAGCA-GTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * ** * *
8033867 TCTCCTTAAGCAGTAGTGGAGCACATCAAAGACGGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * * ** *
8033911 TCTTTCC-GAG-A-TAGTGGGAAGTAGATTTAAGTC-GCCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAG-CAAATCTTA
* * * * * * *
8033955 TCTCCCTGAA-AAGTAGCGGAGAAGGTTGAAGATTA-TAGATCTTA
1 TCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGA-CAGCAAATCTTA
* * **
8033999 TCTCCCTAAACAGTAGTGAAGCAGAACGAAGAC-GACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAG-CAAATCTTA
* * * * ** *
8034043 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAAATCTTA
* * * * * ** * *
8034087 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * ** * *
8034131 TCTCCCTAAGTAGTAGTAGAGCAGATCAAAGCCGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * ** *
8034175 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CTAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGC-AAATCTTA
** * * * * ** *
8034219 TCTCCCTAAAAAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * ** *
8034263 TCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * ** *
8034307 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAG-CCGCCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAG-CAAATCTTA
* * * * * ** * *
8034351 TCTCCTTGAA--AGGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCT-AAGCA-GTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* ** * *
8034395 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCATA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * *
8034439 TCCTTCC-AAG-A-TAGTGGGAAGCATATTTAAGCCACCAAGGATCTTA
1 T-CTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAA--ATCTTA
* * ** **
8034485 TCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * * * ** *
8034529 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAAATCTTA
* * * * * * * * ** * * *
8034573 TCACCATTAGCAGTAGCGGAGTAGGTTAAAAATTGTAGATTTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
* * ** * *
8034617 TCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGT---GGAGCAGATTGAAGACAGCAAATCTTA
* * ** * *
8034664 TCTCCCTAAGCAGTTGTGAAGCAGATCAAAGA-TGACAAATCTAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAG-CAAATCTTA
* * * * ** *
8034708 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAAATCTTA
* * * ** ** * *
8034752 TCTCCCTCAGCAGCAGCGGAATACG-TTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCA-GATTGAAGACAGCAAATCTTA
** ** *
8034796 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATGATCTGA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGC-AA--ATCTTA
*
8034843 TCTCCCTAAGCAGTAGTGAAGCAGAT
1 TCTCCCTAAGCAGTAGTGGAGCAGAT
8034869 CAAAGATGGC
Statistics
Matches: 1027, Mismatches: 401, Indels: 201
0.63 0.25 0.12
Matches are distributed among these distances:
42 38 0.04
43 70 0.07
44 722 0.70
45 78 0.08
46 44 0.04
47 72 0.07
48 3 0.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAAATCTTA
Found at i:8034541 original size:90 final size:89
Alignment explanation
Indices: 8034387--8034925 Score: 416
Period size: 90 Copynumber: 6.0 Consensus size: 89
8034377 TGAAGATTGT
* * *
8034387 AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCATATCCTTCCAAGATA
1 AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATA
*
8034452 GTGGGAAGCATATTTAAGCCACCA
66 GTGGGAAGCAGATTTAAGCCACCA
*
8034476 AGGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGAT
1 A-GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGAT
8034541 AGTGGGAAGCAGATTTAAGCCACCA
65 AGTGGGAAGCAGATTTAAGCCACCA
* * * * * * * * * * * * * * * *
8034566 AG-CCTTGTCACCATTAGCAGTAGCGGAGTAGGTTAAAAATTGTAGATTTTATC-TCCCTAAGCA
1 AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCC-AAG-A
* * * ***
8034629 GTAGTAGCGG-AGTAGGTTGAAG--ATTGT
64 -TAGT-G-GGAAGCAGATTTAAGCCA-CCA
* * *
8034656 AGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGACAAATCTAATCTTTCCAAGATA
1 AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATA
8034721 GTGGGAAGCAGATTTAAGCCACCA
66 GTGGGAAGCAGATTTAAGCCACCA
* * * * * * ** * * * *
8034745 AG-CCTTGTCTCCCTCAGCAGCAGCGGAA-TACG-TTGAAGATTGTAGATCTTATC-TCCCTAAG
1 AGATCTTATCTCCCTAAGCAGTAG-TGAAGCA-GATCAAAGATGGCAAATCTTATCTTTCC-AAG
** *** *
8034806 CAGTAGT-GG-AGCAGATCAAAGATGGCAA
63 -A-TAGTGGGAAGCAGATTTAAG-CCACCA
* * *
8034834 ATGATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTGTCTTTCCAATAT
1 A-GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGAT
8034899 AGTGGGAAGCAGATTTAAGCCACCA
65 AGTGGGAAGCAGATTTAAGCCACCA
8034924 AG
1 AG
8034926 CCATGTCTCC
Statistics
Matches: 330, Mismatches: 95, Indels: 50
0.69 0.20 0.11
Matches are distributed among these distances:
87 8 0.02
88 92 0.28
89 25 0.08
90 107 0.32
91 90 0.27
92 8 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (89 bp):
AGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATA
GTGGGAAGCAGATTTAAGCCACCA
Found at i:8034655 original size:47 final size:47
Alignment explanation
Indices: 8034584--8034677 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
8034574 CACCATTAGC
*
8034584 AGTAGCGGAGTAGGTTAAAAATTGTAGATTTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAAATTGTAGATCTTATCTCCCTAAGCAGT
* *
8034631 AGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAAATTGTAGATCTTATCTCCCTAAGCAGT
8034678 TGTGAAGCAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (47 bp):
AGTAGCGGAGTAGGTTAAAAATTGTAGATCTTATCTCCCTAAGCAGT
Found at i:8034789 original size:179 final size:178
Alignment explanation
Indices: 8034478--8035014 Score: 790
Period size: 179 Copynumber: 3.0 Consensus size: 178
8034468 AGCCACCAAG
8034478 GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAG
* * * * * *
8034543 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCACCATTAGCAGTAGCGGAGTAGGTTAAAAATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAGTAGGTTGAAGATTG
* * * ** * *
8034608 TAGATTTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTG-TA-
131 TAGATCTTATCTCCCTAAGCAGTAGT---GGAGCAGATCAAAGATGGAAAT
* *
8034657 GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGACAAATCTAATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAG
* *
8034722 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAATACGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAGTAGGTTGAAGATTG
8034787 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAAT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG-AAAT
* * * *
8034836 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTGTCTTTCCAATATAG
1 GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAG
* *
8034901 TGGGAAGCAGATTTAAGCCACCAAGCCATGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAGTAGGTTGAAGATTG
* *
8034966 TAGATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAAT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG-AAAT
8035015 CTTGTCTTTC
Statistics
Matches: 326, Mismatches: 29, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
176 13 0.04
178 1 0.00
179 312 0.96
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (178 bp):
GATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAG
TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAGTAGGTTGAAGATTG
TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAT
Found at i:8034858 original size:47 final size:47
Alignment explanation
Indices: 8034789--8034882 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
8034779 GAAGATTGTA
* *
8034789 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAAT
1 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAAT
8034836 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAAT
1 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAAT
8034883 CTTGTCTTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (47 bp):
GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAAT
Found at i:8035000 original size:132 final size:132
Alignment explanation
Indices: 8034836--8035784 Score: 1301
Period size: 132 Copynumber: 7.2 Consensus size: 132
8034826 GATGGCAAAT
* * * *
8034836 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTGTCTTTCCAATATAG
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
*
8034901 TGGGAAGCAGATTTAAGCCACCAAGCCATGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
8034966 TA
131 TA
* * * *
8034968 GATCTGATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTGTCTTTCCCAAAATA
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTT-CCAAGATA
* * ** * *
8035033 TTGGGAAACAGATTTAAGCCACCAAGCCTTGTCTCTTTGAGTAGCAGCGGAGTAGGTTGAAAATT
65 GTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATT
8035098 GTA
130 GTA
* ** * *
8035101 GATCTTATCTCCCTAAGCAGTAGT--AGCGGAGT-AGGTTGACGGTAAATCTTATCTTTCCGAGA
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGA-TCA--AAGACGGCAAATCTTATCTTTCCAAGA
* * * * * * ** * * *
8035163 TAGTGGGAAGTAGATTTAAGTCGCCAAACCTTGTGTCCCTAAAAAGTAACGGAGAAGGTTGAAGA
63 TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGA
8035228 TTGTA
128 TTGTA
* *
8035233 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTTCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
* * *
8035298 TGGGAAGCAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCAGTAGCGGAGTAGGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
8035363 TA
131 TA
* * *
8035365 GATCTTATCTCCTTAAGCAGTAGTGGAGGAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
* * * * ** * * *
8035430 TGGGAAGTAGATTTAAGCCGCCAAGCCTTGACTCCTTGAAAAGCAGCAGAGAAGGTTGAAGGTTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
8035495 TA
131 TA
* *
8035497 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
* * *
8035562 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAATACGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
8035627 TA
131 TA
* * * *
8035629 GATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAAGACCGCAAATCTTATCTTTCCAATATAG
1 GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
* * *
8035694 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAATACGTTGAAGATTG
66 TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
8035759 TA
131 TA
8035761 GATCTTATCTCCCTAAGCAGTAGT
1 GATCTTATCTCCCTAAGCAGTAGT
8035785 AGCGGAGTAG
Statistics
Matches: 721, Mismatches: 89, Indels: 14
0.88 0.11 0.02
Matches are distributed among these distances:
131 6 0.01
132 601 0.83
133 108 0.15
134 6 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
GATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAG
TGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG
TA
Found at i:8035885 original size:44 final size:43
Alignment explanation
Indices: 8035837--8036020 Score: 103
Period size: 44 Copynumber: 4.2 Consensus size: 43
8035827 AAATGGCAAA
8035837 TCTTATCTTCCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAG
1 TCTTATCTTCCCAAGATAGTGGG-AGCAGATTTAAGCCACCAAG
* * * * * * ***
8035881 TCTTATC-TCCTTAAGCAGCAG-CGGAGTAGGTTGAAG--ATTGTAG
1 TCTTATCTTCC-CAAG-A-TAGTGGGAGCAGATTTAAGCCA-CCAAG
** *
8035924 ATCTTATC-TCCCTAAG-TAGTAGTGGAGCAGATCAAAGACCGCCAA-
1 -TCTTATCTTCCC-AAGATAGT-G-GGAGCAGATTTAAG-CCACCAAG
*
8035969 TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAG
1 TCTTATCTTCCCAAGATAGTGGG-AGCAGATTTAAGCCACCAAG
8036013 TCTTATCT
1 TCTTATCT
8036021 CCTTAAGCAG
Statistics
Matches: 100, Mismatches: 24, Indels: 32
0.64 0.15 0.21
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 13 0.13
44 71 0.71
45 10 0.10
46 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (43 bp):
TCTTATCTTCCCAAGATAGTGGGAGCAGATTTAAGCCACCAAG
Found at i:8035903 original size:162 final size:162
Alignment explanation
Indices: 8035636--8035946 Score: 505
Period size: 162 Copynumber: 1.9 Consensus size: 162
8035626 GTAGATCTTA
* * *
8035636 TCTCCCTAAGCAGTAATGGAGCAGATCAAAGACCGCAAATCTTATCTTTCCAATATAGTGGGAAG
1 TCTCCCTAAGCAGTAATGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
* *
8035701 CAGATTTAAGCCACCAAGCCTTGTCTCCCTCAGCAGCAGCGGAATACGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTATCTCCCTAAGCAGCAGCGGAATACGTTGAAGATTGTAGATCT
8035766 TATCTCCCTAAGCAGTAGTAGCGGAGTAGGTT
131 TATCTCCCTAAGCAGTAGTAGCGGAGTAGGTT
* **
8035798 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGCAAATCTTATCTTCCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAATGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
* * * *
8035863 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTATCTCCCTAAGCAGCAGCGGAATACGTTGAAGATTGTAGATCT
*
8035928 TATCTCCCTAAGTAGTAGT
131 TATCTCCCTAAGCAGTAGT
8035947 GGAGCAGATC
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
162 136 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (162 bp):
TCTCCCTAAGCAGTAATGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
CAGATTTAAGCCACCAAGCCTTATCTCCCTAAGCAGCAGCGGAATACGTTGAAGATTGTAGATCT
TATCTCCCTAAGCAGTAGTAGCGGAGTAGGTT
Found at i:8035971 original size:132 final size:132
Alignment explanation
Indices: 8035798--8036078 Score: 499
Period size: 132 Copynumber: 2.1 Consensus size: 132
8035788 GGAGTAGGTT
**
8035798 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGCAAATCTTATCTTCCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
*
8035863 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCT
8035928 TA
131 TA
* * * *
8035930 TCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACCGCCAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
8035995 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCT
66 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCT
8036060 TA
131 TA
8036062 TCTCCCTAAGCAGTAGT
1 TCTCCCTAAGCAGTAGT
8036079 AGCGGAGTAG
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 141 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (132 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACCGCAAATCTTATCTTCCCAAGATAGTGGGAAG
CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCT
TA
Found at i:8036061 original size:44 final size:44
Alignment explanation
Indices: 8036013--8036121 Score: 155
Period size: 47 Copynumber: 2.4 Consensus size: 44
8036003 AGCCACCAAG
*
8036013 TCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
1 TCTTATCTCCCTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
* *
8036057 TCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTGTAGA
1 TCTTATCTCCCTAAGC---AGCAGCGGAGTAGGTTGAAAATTGTAGA
*
8036104 TCATATCTCCCTAAGCAG
1 TCTTATCTCCCTAAGCAG
8036122 TAGTGAAGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
44 17 0.29
47 41 0.71
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
Found at i:8036100 original size:47 final size:47
Alignment explanation
Indices: 8036032--8036125 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
8036022 CTTAAGCAGC
*
8036032 AGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGT
1 AGCGGAGTAGGTTGAAAATTGTAGATCATATCTCCCTAAGCAGTAGT
*
8036079 AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGT
1 AGCGGAGTAGGTTGAAAATTGTAGATCATATCTCCCTAAGCAGTAGT
8036126 GAAGCAGACC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (47 bp):
AGCGGAGTAGGTTGAAAATTGTAGATCATATCTCCCTAAGCAGTAGT
Found at i:8036114 original size:179 final size:179
Alignment explanation
Indices: 8035900--8036257 Score: 574
Period size: 179 Copynumber: 2.0 Consensus size: 179
8035890 CTTAAGCAGC
* * * *
8035900 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACCG
1 AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGACCG
*
8035965 CCAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTATCTC-CTTAAGC
66 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTATCTCTC-TAAGC
*
8036029 AGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGT
130 AGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCAAAGCAGTAGT
**
8036079 AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGACCG
* * * * *
8036144 CAAATCTTGTCTTTCCAATATAGTGGGAAGTAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCA
66 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTATCTCTCTAAGCA
*
8036209 GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGT
131 GCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCAAAGCAGTAGT
8036258 GAAGCAGATC
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
179 163 0.99
180 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (179 bp):
AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGACCG
CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTATCTCTCTAAGCA
GCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCAAAGCAGTAGT
Found at i:8036233 original size:132 final size:132
Alignment explanation
Indices: 8036079--8036447 Score: 578
Period size: 132 Copynumber: 2.8 Consensus size: 132
8036069 AAGCAGTAGT
* *
8036079 AGCGGAGTAGGTTGAAGATTGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * * * *
8036144 CAAATCTTGTCTTTCCAATATAGTGGGAAGTAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCA
66 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
8036209 GC
131 GC
* *
8036211 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
*
8036276 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGA-TTAGAGCCACCAAGCCTTGTCTCCCTGAGC
66 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA-AGCCACCAAGCCTTGTCTCCCTGAGC
8036340 AGC
130 AGC
* * *
8036343 AGCGGAGTACGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * *
8036408 AAAATCTTATCTTTTCAAGATAGTGGGAAACAGATTTAAG
66 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
8036448 NATCTTCTTA
Statistics
Matches: 216, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
131 3 0.01
132 210 0.97
133 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (132 bp):
AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
GC
Found at i:8036576 original size:47 final size:47
Alignment explanation
Indices: 8036513--8036606 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
8036503 CACCATTAGC
*
8036513 AGTAGCGGAGTAGGTTGAAAATTGTAGATTTTATCTACCTAAGCAGT
1 AGTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGT
* * *
8036560 AGTAGCGGAGTAGGTTGAAGATTGTCGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGT
8036607 TGTGAAGCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (47 bp):
AGTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGT
Found at i:8036770 original size:44 final size:44
Alignment explanation
Indices: 8036722--8036903 Score: 108
Period size: 44 Copynumber: 4.1 Consensus size: 44
8036712 ATTGTAGATC
8036722 TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATA
1 TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATA
* * * **
8036766 TTATCTTTCC-AAG-A-TAGTGGGAAGCAGAT--TAGA-GCCACCAAGCC
1 TTATC-TCCCAAAGCAGTAGT--GAAGCAGATCGAAGATGGCA--AA-TA
* ** * * * * * * * *
8036810 TTGTCTCCCTGAGCAGCAGCGAAGTACG-TTGAAGATTGTAGATC
1 TTATCTCCCAAAGCAGTAGTGAAGCA-GATCGAAGATGGCAAATA
8036854 TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATA
1 TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATA
8036898 TTATCT
1 TTATCT
8036904 TTCCAAGATA
Statistics
Matches: 96, Mismatches: 28, Indels: 28
0.63 0.18 0.18
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 7 0.07
44 67 0.70
45 6 0.06
46 5 0.05
47 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (44 bp):
TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATA
Found at i:8036810 original size:132 final size:132
Alignment explanation
Indices: 8036563--8037005 Score: 708
Period size: 132 Copynumber: 3.4 Consensus size: 132
8036553 AAGCAGTAGT
* * * * * *
8036563 AGCGGAGTAGGTTGAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGG
1 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
* * *
8036628 CAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCA
66 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
8036693 GC
131 GC
8036695 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
8036760 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGA-TTAGAGCCACCAAGCCTTGTCTCCCTGAGC
66 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTA-AGCCACCAAGCCTTGTCTCCCTGAGC
8036824 AGC
130 AGC
8036827 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
* * *
8036892 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCACCATTAGCA
66 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
*
8036957 GT
131 GC
* * * * *
8036959 AGCGGAGTAGGTTGAAAATTGTAGATTTTATCTCCCTAAGCAGTAGT
1 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGT
8037006 AGCGGAGTAG
Statistics
Matches: 291, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 285 0.98
133 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
GC
Found at i:8036882 original size:484 final size:483
Alignment explanation
Indices: 8035969--8036931 Score: 1631
Period size: 484 Copynumber: 2.0 Consensus size: 483
8035959 AGACCGCCAA
* * *
8035969 TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAG
1 TCTTATCTTTCCAAGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTATCACCTTAAGCAGCAG
*
8036034 CGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATT
66 CGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATT
* *
8036099 GTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGGCAAATCTTGTCTTTCCAATA
131 GTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGGCAAATCTTATCTTTCCAAGA
* * * * * * *
8036164 TAGTGGGAAGTAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCAGCAGCGGAGTAGGTTGAAGA
196 TAGTGGAAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAAGA
8036229 TTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAA
261 TTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAA
*
8036294 GATAGTGGGAAGCAGATTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTACGTTGAA
326 GATAGTGGGAAGCAGATTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAA
* * * *
8036359 GATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCTTTTC
391 GATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCAAAGACGGAAAATATTATCTTTCC
8036424 AAGATAGTGGGAAACAGATTTAAGNATCT
456 AAGATAGTGGGAAACAGATTTAAG-ATCT
* * *
8036453 TCTTATCTTTTCAAGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTGTCACCATT-AGCAGTA
1 TCTTATCTTTCCAAGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTATCACC-TTAAGCAGCA
*
8036517 GCGGAGTAGGTTGAAAATTGTAGATTTTATCTACCTAAGCAGTAGTAGCGGAGTAGGTTGAAGAT
65 GCGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGTAGTAGCGGAGTAGGTTGAAGAT
* * * *
8036582 TGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAG
130 TGTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGGCAAATCTTATCTTTCCAAG
8036647 ATAGTGGAAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAAG
195 ATAGTGGAAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAAG
8036712 ATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCA
260 ATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCA
8036777 AGATAGTGGGAAGCAGATTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGA
325 AGATAGTGGGAAGCAGATTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGA
* * *
8036842 AGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTC
390 AGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCAAAGACGGAAAATATTATCTTTC
*
8036907 CAAGATAGTGGGAAGCAGATTTAAG
455 CAAGATAGTGGGAAACAGATTTAAG
8036932 CCACCAAGCC
Statistics
Matches: 448, Mismatches: 30, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
484 446 1.00
485 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.26
Consensus pattern (483 bp):
TCTTATCTTTCCAAGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTATCACCTTAAGCAGCAG
CGGAGTAGGTTGAAAATTGTAGATCTTATCTACCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATT
GTAGATCATATCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGGCAAATCTTATCTTTCCAAGA
TAGTGGAAAGCAGATTTAAACCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAAGA
TTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAA
GATAGTGGGAAGCAGATTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAA
GATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCAAAGACGGAAAATATTATCTTTCC
AAGATAGTGGGAAACAGATTTAAGATCT
Found at i:8037027 original size:47 final size:47
Alignment explanation
Indices: 8036956--8037322 Score: 357
Period size: 47 Copynumber: 8.0 Consensus size: 47
8036946 CACCATTAGC
*
8036956 AGTAGCGGAGTAGGTTGAAA-ATTGTAGATTTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTT-AAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
8037003 AGTAGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * * * ** * * * * *
8037050 --T-GTGAAGCAGATCCAAGATGGCAAATCTTATTTTTCC-AAG-A-T
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTA-TCTCCCTAAGCAGT
* * * *** * * *
8037092 AGT-G-GGAAGGAGATTTAAGCCA-CCAAG-TCTTGTCTCTCT--G-AGC
1 AGTAGCGG-AGTAGGTTAAAG--ATTGTAGATCTTATCTCCCTAAGCAGT
*
8037135 AGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
8037182 AGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
8037229 AGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
8037276 AGTAGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGT
1 AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
8037323 TGTGAAGCAG
Statistics
Matches: 266, Mismatches: 38, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
42 4 0.02
43 10 0.04
44 57 0.21
45 8 0.03
46 5 0.02
47 182 0.68
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
AGTAGCGGAGTAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
Found at i:8037049 original size:311 final size:311
Alignment explanation
Indices: 8035798--8037184 Score: 1519
Period size: 311 Copynumber: 4.5 Consensus size: 311
8035788 GGAGTAGGTT
* * *
8035798 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGCAAATCTTATCTTCCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAG
* * *
8035863 CAGATTTAAGCCACCAAGTCTTATCTCCTTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
* * * ** * *
8035928 TATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACCGCCAATCTTATCTTTCCAAGATAGTGGGA
131 TATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGGA
*
8035993 AGCAGATTTAAGCCACCAAGTCTTATCTCC-TTAAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
196 AGCAGATTTAAGCCACCAAGCCTTATCTCCATT-AGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
* *
8036057 TCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTGTAGATCATA
260 TCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTAGATCTTA
* * *
8036109 TCTCCCTAAGCAGTAGTGAAGCAGACCAAAGATGGCAAATCTTGTCTTTCCAATATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAG
* *
8036174 TAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
*
8036239 TATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGGA
131 TATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGGA
* * * * *
8036304 AGCAGA-TTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTACGTTGAAGATTGTAGA
196 AGCAGATTTA-AGCCACCAAGCCTTATCTCCATTAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
* * * ** * *
8036368 TCTTATCTCCCTAAGCAGTAGT---GGAGCAGATCAAAGACGGAAAATCTTA
260 TCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTAGATCTTA
** * ** * *
8036417 TCT-TTTCAAG-A-TAGTGGGAAACAGATTTAAGNAT--C--TTCTTATCTTTTCAAGATAGTGG
1 TCTCCCT-AAGCAGTAGT--GAAGCAGATCAAAG-ATGGCAAATCTTATCTTTCCAAGATAGTGG
* * * * * * *
8036475 GAAACAGATTTAAGCCACCAAGCCTTGTCACCATTAGCAGTAGCGGAGTAGGTTGAAAATTGTAG
62 GAAGCAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAG
* * * * * * * * * *
8036540 ATTTTATCTACCTAAGCAGTAGTAGCGGAGTAGGTTGAAGATTGTC-GATCTTATC-TCCCTAAG
127 ATCTTATCTCCCTAAGCAGTAGT---GAAGCAGATCGAAGA-TGGCAAATATTATCTTTCC-AAG
* * ** **** ** * * * *
8036603 -CAGTTGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCA--AG-A-TAGTGGAAAGCAGAT
187 ATAG-TGGGAAGCAGATTTAAGCCACCAAGCCTTATC--TCCATTAGCAGCAGCGG--AGTAGGT
* *** * * * * * * *
8036663 TTAAACCA-CCAAG-CCTTGTCTCCCT--G-AGCAGCAGCGAAGTACGTTGAAGATTGTAGATCT
247 TGAAA--ATTGTAGATCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTAGATCT
8036723 TA
310 TA
* * *
8036725 TCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAG
* * *
8036790 CAGA-TTAGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTACGTTGAAGATTGTAGATC
66 CAGATTTA-AGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATC
*
8036854 TTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGG
130 TTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGG
* * *
8036919 AAGCAGATTTAAGCCACCAAGCCTTGTCACCATTAGCAGTAGCGGAGTAGGTTGAAAATTGTAGA
195 AAGCAGATTTAAGCCACCAAGCCTTATCTCCATTAGCAGCAGCGGAGTAGGTTGAAAATTGTAGA
* *
8036984 TTTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTCGATCTTA
260 TCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTAGATCTTA
* * *
8037036 TCTCCCTAAGCAGTTGTGAAGCAGATCCAAGATGGCAAATCTTATTTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAG
* * *
8037101 GAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCAGTAGCGGAGTAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
8037166 TATCTCCCTAAGCAGTAGT
131 TATCTCCCTAAGCAGTAGT
8037185 AGCGGAGTAG
Statistics
Matches: 866, Mismatches: 167, Indels: 86
0.77 0.15 0.08
Matches are distributed among these distances:
305 99 0.11
306 13 0.02
307 16 0.02
308 191 0.22
309 16 0.02
310 20 0.02
311 507 0.59
312 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (311 bp):
TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAG
CAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCT
TATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGATGGCAAATATTATCTTTCCAAGATAGTGGGA
AGCAGATTTAAGCCACCAAGCCTTATCTCCATTAGCAGCAGCGGAGTAGGTTGAAAATTGTAGAT
CTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTAGATCTTA
Found at i:8037057 original size:179 final size:179
Alignment explanation
Indices: 8036827--8037231 Score: 659
Period size: 179 Copynumber: 2.3 Consensus size: 179
8036817 CCTGAGCAGC
* * * *
8036827 AGCGAAGTACGTTGAAGATTGTAGATCTTATCTCCCAAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCCAAGATGG
*
8036892 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCAC-CATTAGC
66 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCACTC-TGAGC
*
8036956 AGTAGCGGAGTAGGTTGAAAATTGTAGATTTTATCTCCCTAAGCAGTAGT
130 AGTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGT
* * *
8037006 AGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCCAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCCAAGATGG
* * * * *
8037071 CAAATCTTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCA
66 CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCACTCTGAGCA
*
8037136 GTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
131 GTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGT
8037185 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
8037232 AGCGGAGTAG
Statistics
Matches: 207, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
179 206 1.00
180 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (179 bp):
AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCCAAGATGG
CAAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCACTCTGAGCA
GTAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGT
Found at i:8037159 original size:132 final size:132
Alignment explanation
Indices: 8037006--8038063 Score: 1200
Period size: 132 Copynumber: 7.9 Consensus size: 132
8036996 AAGCAGTAGT
* * * *
8037006 AGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCCAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * *
8037071 CAAATCTTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCA
66 CAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
*
8037136 GT
131 GC
* * * **
8037138 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGAAGA
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT---GAAGCAGATCAAAGA
* * * * * * * * *** * *
8037203 TTGTAGATCTTA-TCTCCCTAAGCAGTAGTAGCGG-AGTAGGTTGAAG--ATTGTAGATCTTATC
63 TGGCAAATCTTATTTTTCC-AAG-A-TAGT-G-GGAAGCAGATTTAAGCCA-CCAAG-CCTTGTC
* *
8037264 TCCCTAAGCAGTAGT
121 TCCCT--G-AGCAGC
* * * *
8037279 AGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCCAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * *
8037344 CAAATCTTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGCA
66 CAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
8037409 GC
131 GC
* * **
8037411 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGAGCAAAGACAG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* *
8037476 CAAATCTTATCTTTT-CAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAAC
66 CAAATCTTAT-TTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC
8037540 AGC
130 AGC
* * * *
8037543 AACGGAGTAGGGTGAAGATAGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACT-
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGA-TG
* * * * * **
8037607 GCAAATATCATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACTAAGCCTTGTCTCCCTAAAA
65 GCAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC
*
8037672 AGT
130 AGC
* * * * * * *
8037675 AGAGGAGTAGGTTAAAGATTGGAAATCTTATCTCCCTAAGCAGTAGTGGAGGAGATCAAAGACGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * * * *
8037740 TAAATATT-TTCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCGCCAAGCCTTGTCTCCCTGA-A
66 CAAATCTTATT-TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC
8037803 AGGC
130 A-GC
* * *
8037807 AGCGGAGAAGGTTGAAGATTGTAGATCTTATCTGCCTAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
*
8037872 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
66 CAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
8037937 GC
131 GC
* * *
8037939 AGCGGAGTACGTTGACGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAA-CAGATCAAAGACG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT-GAAGCAGATCAAAGATG
** *
8038003 GCAAATCTTATCATTCCAAGATAGTGGGAAGCAGATTTAAGCCATTC-AGCCTTGTCTCCCT
65 GCAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA-CCAAGCCTTGTCTCCCT
8038064 AAAAAGAAGT
Statistics
Matches: 787, Mismatches: 112, Indels: 54
0.83 0.12 0.06
Matches are distributed among these distances:
131 6 0.01
132 608 0.77
133 11 0.01
134 6 0.01
135 42 0.05
136 8 0.01
137 8 0.01
138 42 0.05
139 6 0.01
140 1 0.00
141 49 0.06
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
CAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
GC
Found at i:8037847 original size:396 final size:395
Alignment explanation
Indices: 8037006--8038083 Score: 1385
Period size: 396 Copynumber: 2.7 Consensus size: 395
8036996 AAGCAGTAGT
* * * *
8037006 AGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCCAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* * *
8037071 CAAATCTTAT-TTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGTCTTGTCTCTCTGAGC
66 CAAATCTTATCTTTT-CAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC
* * * **
8037135 AGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGCGGAGTAGGTTGA
130 AGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT---GGAGCAGATCAA
* * * * * * * * * *
8037200 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGCGG-AGTAGGTTGAAG--ATTGTAGATCTTA
192 AGACTGCAAATCTTATCTTCC-AAG-A-TAGT-G-GGAAGCAGATTTAAGCCATT-AAG-CCTTG
* * *** *
8037262 TCTCCCTAAGCAGTAGTAGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAAGCAGTTGTG
250 TCTCCCTAA--A-AAGTAGAGGAGTAGGTTAAAGATTGGAAATCTTATCTCCCTAAGCAGTAGTG
* * *
8037327 AAGCAGATCCAAGATGGCAAATCTTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAG
312 AAGCAGATCAAAGACGGCAAATATTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAG
* * *
8037392 TCTTGTCTCTCTGAGCAGC
377 CCTTGTCTCCCTGAGAAGC
* * **
8037411 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGAGCAAAGACAG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
*
8037476 CAAATCTTATCTTTTCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAACA
66 CAAATCTTATCTTTTCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
* * *
8037541 GCAACGGAGTAGGGTGAAGATAGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
131 GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* * *
8037606 TGCAAATATCATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACTAAGCCTTGTCTCCCTAAA
196 TGCAAATCTTATC-TTCCAAGATAGTGGGAAGCAGATTTAAGCCATTAAGCCTTGTCTCCCTAAA
* *
8037671 AAGTAGAGGAGTAGGTTAAAGATTGGAAATCTTATCTCCCTAAGCAGTAGTGGAGGAGATCAAAG
260 AAGTAGAGGAGTAGGTTAAAGATTGGAAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAG
* * *
8037736 ACGGTAAATATT-TTCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCGCCAAGCCTTGTCTCCCT
325 ACGGCAAATATTATT-TTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGCCTTGTCTCCCT
8037800 GA-AAGGC
389 GAGAA-GC
* * *
8037807 AGCGGAGAAGGTTGAAGATTGTAGATCTTATCTGCCTAAGCAGTAGTGAAGCAGATCGAAGATGG
1 AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
* *
8037872 CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
66 CAAATCTTATCTTTTCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
* * *
8037937 GCAGCGGAGTACGTTGACGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGAC
131 GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* *
8038002 GGCAAATCTTATCATTCCAAGATAGTGGGAAGCAGATTTAAGCCATTCAGCCTTGTCTCCCTAAA
196 TGCAAATCTTATC-TTCCAAGATAGTGGGAAGCAGATTTAAGCCATTAAGCCTTGTCTCCCTAAA
* * *
8038067 AAGAAGTGCAGTAGGTT
260 AAGTAGAGGAGTAGGTT
8038084 NNNNNNNNNN
Statistics
Matches: 591, Mismatches: 75, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
395 3 0.01
396 366 0.62
397 1 0.00
398 2 0.00
399 22 0.04
400 6 0.01
401 3 0.01
402 23 0.04
403 3 0.01
405 158 0.27
406 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (395 bp):
AGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGG
CAAATCTTATCTTTTCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCA
GCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
TGCAAATCTTATCTTCCAAGATAGTGGGAAGCAGATTTAAGCCATTAAGCCTTGTCTCCCTAAAA
AGTAGAGGAGTAGGTTAAAGATTGGAAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGA
CGGCAAATATTATTTTTCCAAGATAGTGGGAAGGAGATTTAAGCCACCAAGCCTTGTCTCCCTGA
GAAGC
Found at i:8041184 original size:14 final size:15
Alignment explanation
Indices: 8041155--8041196 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
8041145 CAATATAAAT
8041155 AAAATGAAACATATAA
1 AAAAT-AAACATATAA
*
8041171 ACAATAAACA-ATAA
1 AAAATAAACATATAA
*
8041185 AAAATAATCATA
1 AAAATAAACATA
8041197 CGGGCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.55
15 6 0.27
16 4 0.18
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAACATATAA
Found at i:8043415 original size:88 final size:88
Alignment explanation
Indices: 8043316--8044062 Score: 1266
Period size: 88 Copynumber: 8.5 Consensus size: 88
8043306 TATCTTCAGT
* * * *
8043316 CTGCTCCGCTGTCAATGCAGGAAGGAAAGATCTGTTGTCTTCAACCAGCT-C-TGCTACAACTGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCAT-C-ACAACCGA
*
8043379 GAGAGGCAAGGTTTGTGTCTTCGAT
64 GAGAGGCAAGGTTTGTGTCTTCGAC
* * * *
8043404 TTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTA-CTACAACCGAG
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC-ACAACCGAG
* *
8043468 AGAGGCAAGATTTGTATCTTCGAC
65 AGAGGCAAGGTTTGTGTCTTCGAC
8043492 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043557 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
* *
8043580 CTGCTTCGCTGTCAATGCCGGAAGGGAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043645 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
* *
8043668 CTGCTTCGCTGTCAATGCCGGAAGGGAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043733 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
*
8043756 CTGCTTCGCTGTCAATGCAGGAAGGTAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043821 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
*
8043844 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACTGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043909 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
8043932 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
8043997 GAGGCAAGGTTTGTGTCTTCGAC
66 GAGGCAAGGTTTGTGTCTTCGAC
* * *
8044020 CTGCTTCACTATCAATACAGGAAGGCAAGATCTTTTGTCTTCA
1 CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
8044063 CTTATCTGTT
Statistics
Matches: 631, Mismatches: 25, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
88 630 1.00
89 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (88 bp):
CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
GAGGCAAGGTTTGTGTCTTCGAC
Found at i:8043445 original size:45 final size:44
Alignment explanation
Indices: 8043258--8043974 Score: 181
Period size: 44 Copynumber: 16.2 Consensus size: 44
8043248 CTGTAAACTA
* * * * * *
8043258 TGTTGTCTTCGATCTACTTCACTATCAGTACAAGAAGGCAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * *
8043303 TGCTATCTTCAGTCTGCTCCGCTGTCAATGCAGGAAGGAAAGATC
1 TGTTGTCTTCA-TCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * *
8043348 TGTTGTCTTCAACCAGC-TCTGCT-ACAACTG-A-GAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTC-GCTGTCAA-TGCAGGA-AGGCAAGATC
* *
8043392 TG-TGTCTTCGATTTGCTTCGCTGTTAATGCAGGAAGGCAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * * *
8043436 TGTTGTCTTCAACCAGC-TCTACT-ACAA--CCGAGAGAGGCAAGATT
1 TGTTGTCTTC-ATCTGCTTC-GCTGTCAATGCAG-GA-AGGCAAGATC
* *
8043480 TG-TATCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * * * * *
8043524 TTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTCGCTGTCA-ATGCAG-GA-AGGCAAGATC
* * *
8043568 TG-TGTCTTCGACCTGCTTCGCTGTCAATGCCGGAAGGGAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * * * * *
8043612 TTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTCGCTGTCA-ATGCAG-GA-AGGCAAGATC
* * *
8043656 TG-TGTCTTCGACCTGCTTCGCTGTCAATGCCGGAAGGGAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * * * * *
8043700 TTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTCGCTGTCA-ATGCAG-GA-AGGCAAGATC
* *
8043744 TG-TGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGTAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * * * * *
8043788 TTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTCGCTGTCA-ATGCAG-GA-AGGCAAGATC
*
8043832 TG-TGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * ** * *
8043876 TTTTGTCTTCAACCAGC-TC-CATCACAACTG-A-GAGAGGCAAGGTT
1 TGTTGTCTTC-ATCTGCTTCGC-TGTCAA-TGCAGGA-AGGCAAGATC
*
8043920 TG-TGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
1 TGTTGTCTTC-ATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
*
8043964 TTTTGTCTTCA
1 TGTTGTCTTCA
8043975 ACCAGCTCCA
Statistics
Matches: 489, Mismatches: 125, Indels: 117
0.67 0.17 0.16
Matches are distributed among these distances:
42 24 0.05
43 113 0.23
44 175 0.36
45 152 0.31
46 25 0.05
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (44 bp):
TGTTGTCTTCATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
Found at i:8045286 original size:9 final size:9
Alignment explanation
Indices: 8045272--8045303 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8045262 CCATTTTTAC
8045272 TTTTTCATT
1 TTTTTCATT
8045281 TTTTTCA--
1 TTTTTCATT
8045288 TTTTTCATT
1 TTTTTCATT
8045297 TTTTTCA
1 TTTTTCA
8045304 GCATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTCATT
Found at i:8045291 original size:16 final size:16
Alignment explanation
Indices: 8045272--8045303 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8045262 CCATTTTTAC
8045272 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
8045288 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
8045304 GCATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTCATTTTTTTCA
Found at i:8046138 original size:16 final size:15
Alignment explanation
Indices: 8046108--8046146 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8046098 TGACCTCTCC
* *
8046108 TCTTTCTTTTCTTTT
1 TCTTTTTTTTATTTT
8046123 TCTTCTTTTTTATTTT
1 TCTT-TTTTTTATTTT
8046139 TCTTTTTT
1 TCTTTTTT
8046147 CCTATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (15 bp):
TCTTTTTTTTATTTT
Found at i:8046170 original size:16 final size:16
Alignment explanation
Indices: 8046157--8046247 Score: 67
Period size: 17 Copynumber: 5.4 Consensus size: 16
8046147 CCTATTTTGA
8046157 CTTTGATTTTTTTTAT
1 CTTTGATTTTTTTTAT
*
8046173 TTTTGATTTTTTGATT-T
1 CTTTGATTTTTT--TTAT
* *
8046190 TTTTGATTTTTTTGATTT
1 CTTTGATTTTTTT--TAT
*
8046208 TTTTGATTTTTTTTTATT
1 CTTTGA-TTTTTTTTA-T
*
8046226 TTTTGATTTTTTTTAT
1 CTTTGATTTTTTTTAT
*
8046242 TTTTGA
1 CTTTGA
8046248 GTCTGAACTC
Statistics
Matches: 66, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
15 1 0.02
16 18 0.27
17 24 0.36
18 16 0.24
19 7 0.11
ACGTcount: A:0.12, C:0.01, G:0.09, T:0.78
Consensus pattern (16 bp):
CTTTGATTTTTTTTAT
Found at i:8046176 original size:9 final size:9
Alignment explanation
Indices: 8046158--8046245 Score: 112
Period size: 9 Copynumber: 10.1 Consensus size: 9
8046148 CTATTTTGAC
8046158 TTTGATTTT
1 TTTGATTTT
*
8046167 TTT--TATT
1 TTTGATTTT
8046174 TTTGA-TTT
1 TTTGATTTT
8046182 TTTGATTTT
1 TTTGATTTT
8046191 TTTGATTTT
1 TTTGATTTT
8046200 TTTGATTTT
1 TTTGATTTT
8046209 TTTGATTTT
1 TTTGATTTT
*
8046218 TTT-TTATTT
1 TTTGAT-TTT
8046227 TTTGATTTT
1 TTTGATTTT
*
8046236 TTTTATTTT
1 TTTGATTTT
8046245 T
1 T
8046246 GAGTCTGAAC
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.09
8 8 0.12
9 54 0.78
10 1 0.01
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.81
Consensus pattern (9 bp):
TTTGATTTT
Found at i:8046183 original size:8 final size:8
Alignment explanation
Indices: 8046158--8046237 Score: 81
Period size: 8 Copynumber: 9.4 Consensus size: 8
8046148 CTATTTTGAC
8046158 TTTGATTT
1 TTTGATTT
*
8046166 TTT-TTATT
1 TTTGAT-TT
8046174 TTTGATTT
1 TTTGATTT
8046182 TTTGATTTT
1 TTTGA-TTT
8046191 TTTGATTTT
1 TTTGA-TTT
8046200 TTTGATTTT
1 TTTGA-TTT
8046209 TTTGATTTTT
1 TTTGA--TTT
*
8046219 TTTTATTT
1 TTTGATTT
8046227 TTTGATTT
1 TTTGATTT
8046235 TTT
1 TTT
8046238 TTATTTTTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
7 1 0.02
8 28 0.44
9 27 0.42
10 8 0.12
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (8 bp):
TTTGATTT
Found at i:8046238 original size:27 final size:26
Alignment explanation
Indices: 8046158--8046245 Score: 126
Period size: 27 Copynumber: 3.4 Consensus size: 26
8046148 CTATTTTGAC
8046158 TTTGATTTTTTTTA-TTTTTGA-TTT
1 TTTGATTTTTTTTATTTTTTGATTTT
*
8046182 TTTGATTTTTTTGATTTTTTTGATTTT
1 TTTGATTTTTTTTA-TTTTTTGATTTT
8046209 TTTGATTTTTTTTTATTTTTTGATTTT
1 TTTGA-TTTTTTTTATTTTTTGATTTT
*
8046236 TTTTATTTTT
1 TTTGATTTTT
8046246 GAGTCTGAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
24 13 0.23
26 12 0.21
27 24 0.42
28 8 0.14
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.81
Consensus pattern (26 bp):
TTTGATTTTTTTTATTTTTTGATTTT
Found at i:8046316 original size:44 final size:44
Alignment explanation
Indices: 8046253--8046561 Score: 618
Period size: 44 Copynumber: 7.0 Consensus size: 44
8046243 TTTGAGTCTG
8046253 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046297 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046341 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046385 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046429 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046473 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046517 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
1 AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
8046561 A
1 A
8046562 TCAATGTTAT
Statistics
Matches: 265, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 265 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (44 bp):
AACTCATGAGATTAGGCAAGTCCTGGTCATGCTTTTCGACCAGA
Found at i:8047259 original size:17 final size:18
Alignment explanation
Indices: 8047227--8047263 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8047217 TCTGCACAGT
8047227 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
8047245 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
8047262 AT
1 AT
8047264 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:8049467 original size:102 final size:102
Alignment explanation
Indices: 8049231--8049457 Score: 436
Period size: 102 Copynumber: 2.2 Consensus size: 102
8049221 CAATGTCTCG
*
8049231 AATTCCCGATACGCGAATAAAAAATGCTTATTTAAAAGATATTTAATTATCTTGGATTTAAAAAG
1 AATTCTCGATACGCGAATAAAAAATGCTTATTTAAAAGATATTTAATTATCTTGGATTTAAAAAG
8049296 GGTTCACGACCAGTAAGTTAGGGCACGATCCGTTTTT
66 GGTTCACGACCAGTAAGTTAGGGCACGATCCGTTTTT
8049333 AATTCTCGATACGCGAATAAAAAATGCTTATTTAAAAGATATTTAATTATCTTGGATTTAAAAAG
1 AATTCTCGATACGCGAATAAAAAATGCTTATTTAAAAGATATTTAATTATCTTGGATTTAAAAAG
*
8049398 GGTTCACGACCAGTAAGTTAGGGCACGATCCTTTTTT
66 GGTTCACGACCAGTAAGTTAGGGCACGATCCGTTTTT
8049435 AATTCTCGATACGCGAATAAAAA
1 AATTCTCGATACGCGAATAAAAA
8049458 GGGGATATTT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 123 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (102 bp):
AATTCTCGATACGCGAATAAAAAATGCTTATTTAAAAGATATTTAATTATCTTGGATTTAAAAAG
GGTTCACGACCAGTAAGTTAGGGCACGATCCGTTTTT
Found at i:8050312 original size:22 final size:22
Alignment explanation
Indices: 8050270--8050319 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
8050260 TTGAAATTAT
* * *
8050270 TATACATGAAAAATTATGTATG
1 TATATATGAAAAATTAAGTATA
8050292 TATATATG-AAAATTAAAGTATA
1 TATATATGAAAAATT-AAGTATA
8050314 TATATA
1 TATATA
8050320 GAGAGAGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (22 bp):
TATATATGAAAAATTAAGTATA
Found at i:8054611 original size:27 final size:28
Alignment explanation
Indices: 8054559--8054611 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
8054549 AAAATAATTA
*
8054559 AAATTAAATATGTTAATAATTTAAGTGT
1 AAATTAAATATGTTAATAATTAAAGTGT
* *
8054587 AAATTAATTAT-TTTATAATTAAAGT
1 AAATTAAATATGTTAATAATTAAAGT
8054612 AAGAATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (28 bp):
AAATTAAATATGTTAATAATTAAAGTGT
Found at i:8057948 original size:20 final size:21
Alignment explanation
Indices: 8057915--8057957 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8057905 TATATCTTGC
8057915 AAAATAGGTAATGT-TGATATT
1 AAAATAGGTAATGTGTGAT-TT
*
8057936 AAAA-AGGTTATGTGTGATTT
1 AAAATAGGTAATGTGTGATTT
8057956 AA
1 AA
8057958 GTGCATCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (21 bp):
AAAATAGGTAATGTGTGATTT
Found at i:8061505 original size:14 final size:16
Alignment explanation
Indices: 8061486--8061518 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
8061476 GGCAACCCAC
8061486 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
8061500 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
8061516 ATT
1 ATT
8061519 CGGTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 5 0.29
16 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:8066844 original size:12 final size:12
Alignment explanation
Indices: 8066807--8066844 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8066797 TTCCATTACT
8066807 ATTATTATTA-C
1 ATTATTATTATC
*
8066818 ATTATTTACTATC
1 ATTA-TTATTATC
8066831 ATTATTATTATC
1 ATTATTATTATC
8066843 AT
1 AT
8066845 ATTTTCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.17
12 14 0.61
13 5 0.22
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:8073161 original size:38 final size:38
Alignment explanation
Indices: 8073089--8073161 Score: 87
Period size: 38 Copynumber: 1.9 Consensus size: 38
8073079 TCCAAATGTC
*
8073089 ATTCATACATTTCTAGTTAGGAATATTTGATTCATTTG
1 ATTCATACATTTCTAGTTAGGAATATTAGATTCATTTG
* *
8073127 ATTCATGACA-TTCTA-TTAGGCATAATTAGGTTCAT
1 ATTCAT-ACATTTCTAGTTAGGAAT-ATTAGATTCAT
8073162 AAGATGAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
37 7 0.23
38 20 0.67
39 3 0.10
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (38 bp):
ATTCATACATTTCTAGTTAGGAATATTAGATTCATTTG
Found at i:8073313 original size:44 final size:44
Alignment explanation
Indices: 8073250--8073695 Score: 567
Period size: 44 Copynumber: 10.1 Consensus size: 44
8073240 GGCATGTTGA
* * * *
8073250 AAGAAAGCAAATCTTGTCTTCATGTATCGACGTGAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* *
8073294 AAGAAAACATATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* *
8073338 AAGAAAATAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
*
8073382 AAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * *
8073426 AAGAAAATAGATTTTGTCTTCATGTATTGGTGGCGAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
*
8073471 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
8073515 AA-AAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
1 AAGAAAA-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * * *
8073559 AAGATAGCAGATCTTGTTTTCATATATTGGCGTGAAGGAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * *
8073603 AAGAAAGCAGATCTTGTCTTTATGTATTGG-GGGCAAAGTAGATCG
1 AAGAAAACAGATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCG
* ** * *
8073648 AATAAAGTAGATCTTGTCTTCCCATATATTGGC--GAAATAGATCG
1 AAGAAAACAGATCTTGTCTT--CATGTATTGGCGTGAAGTAGATCG
8073692 AAGA
1 AAGA
8073696 TACAAGTCTT
Statistics
Matches: 354, Mismatches: 40, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
43 5 0.01
44 273 0.77
45 67 0.19
46 1 0.00
47 8 0.02
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (44 bp):
AAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
Found at i:8073589 original size:177 final size:177
Alignment explanation
Indices: 8073250--8073695 Score: 594
Period size: 177 Copynumber: 2.5 Consensus size: 177
8073240 GGCATGTTGA
* * * ** * * * *
8073250 AAGAAAGCAAATCTTGTCTTCATGTA-TCGACGTGAAGTAGATCGAAGAAAACATATATTGTCTT
1 AAGAAAACAGATCTTGTCTTCATGTATTGGGGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
8073314 CATGTATTGGCGTGAAGTAGATCGAAGAAAATAGATCTTGTCTTCATGTATTGGCGTGAAGTAAA
66 CATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAAA
* *
8073379 TCGAAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG
131 TCGAAGAAAACAGATCTTGTCTTCATATATTGGCATGAAGGAGATCG
* * *
8073426 AAGAAAATAGATTTTGTCTTCATGTATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 AAGAAAACAGATCTTGTCTTCATGTATTGGGGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
8073491 CATGTATTGGCGTGAAGTAGATCGAA-AAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
66 CATGTATTGGCGTGAAGTAGATCGAAGAAAA-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAA
* * * *
8073555 ATCGAAGATAGCAGATCTTGTTTTCATATATTGGCGTGAAGGAGATCG
130 ATCGAAGAAAACAGATCTTGTCTTCATATATTGGCATGAAGGAGATCG
* * * * *
8073603 AAGAAAGCAGATCTTGTCTTTATGTATTGGGGGCAAAGTAGATCGAATAAAGTAGATCTTGTCTT
1 AAGAAAACAGATCTTGTCTTCATGTATTGGGGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
8073668 CCCATATATTGGC--GAAATAGATCGAAGA
66 --CATGTATTGGCGTGAAGTAGATCGAAGA
8073696 TACAAGTCTT
Statistics
Matches: 236, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
176 26 0.11
177 199 0.84
178 1 0.00
179 10 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (177 bp):
AAGAAAACAGATCTTGTCTTCATGTATTGGGGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAAA
TCGAAGAAAACAGATCTTGTCTTCATATATTGGCATGAAGGAGATCG
Found at i:8073697 original size:133 final size:131
Alignment explanation
Indices: 8073248--8073695 Score: 578
Period size: 133 Copynumber: 3.4 Consensus size: 131
8073238 GGGGCATGTT
* * * *
8073248 GAAAGAAAGCAAATCTTGTCTTCATGTATCGACGTGAAGTAGATCGAAGAAAACATATATTGTCT
1 GAAA-AAAGCAGATCTTGTCTTCATGTATTGGC-TGAAGTAGATCGAAGAAAACAGATATTGTCT
** *
8073313 TCATGTATTGGCGTGAAGTAGATCGAAGAAAATAGATCTTGTCTTCATGTATTGGCGTGAAGTAA
64 TCATGTATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
8073378 ATC
129 ATC
* *
8073381 GAAGAAAA-CAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAATAGATTTTGTCT
1 GAA-AAAAGCAGATCTTGTCTTCATGTATTGGC-TGAAGTAGATCGAAGAAAACAGATATTGTCT
* *
8073445 TCATGTATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
64 TCATGTATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
8073510 GATC
128 GATC
* * * *
8073514 GAAAAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTTTT
1 GAAAAAAGCAGATCTTGTCTTCATGTATTGGC-TGAAGTAGATCGAAGAAAACAGATATTGTCTT
* * * *
8073579 CATATATTGGCGTGAAGGAGATCGAAGAAAGCAGATCTTGTCTTTATGTATTGG-GGGCAAAGTA
65 CATGTATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTG--AAGTA
8073643 GATC
128 GATC
* * * *
8073647 GAATAAAGTAGATCTTGTCTTCCCATATATTGGC-GAAATAGATCGAAGA
1 GAAAAAAGCAGATCTTGTCTT--CATGTATTGGCTGAAGTAGATCGAAGA
8073696 TACAAGTCTT
Statistics
Matches: 280, Mismatches: 28, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
131 2 0.01
132 104 0.37
133 163 0.58
134 1 0.00
135 10 0.04
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (131 bp):
GAAAAAAGCAGATCTTGTCTTCATGTATTGGCTGAAGTAGATCGAAGAAAACAGATATTGTCTTC
ATGTATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
C
Found at i:8075208 original size:12 final size:12
Alignment explanation
Indices: 8075171--8075208 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8075161 TTCCATTACT
8075171 ATTATTATTA-C
1 ATTATTATTATC
*
8075182 ATTATTTACTATC
1 ATTA-TTATTATC
8075195 ATTATTATTATC
1 ATTATTATTATC
8075207 AT
1 AT
8075209 ATTTTCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.17
12 14 0.61
13 5 0.22
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:8076567 original size:6 final size:6
Alignment explanation
Indices: 8076556--8076582 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8076546 TAAATAAACG
8076556 AATTCT AATTCT AATTCT AATTCT AAT
1 AATTCT AATTCT AATTCT AATTCT AAT
8076583 AGAAAGAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTCT
Found at i:8077662 original size:20 final size:20
Alignment explanation
Indices: 8077637--8077674 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8077627 ATTTATTAAA
8077637 AAAAAGCTCAAAAAAATTAT
1 AAAAAGCTCAAAAAAATTAT
*
8077657 AAAAAGCTCATAAAAATT
1 AAAAAGCTCAAAAAAATT
8077675 CAAAACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (20 bp):
AAAAAGCTCAAAAAAATTAT
Found at i:8092894 original size:17 final size:17
Alignment explanation
Indices: 8092874--8092917 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
8092864 AAAATAAAAA
**
8092874 AAGAAAGAAAAGGAGAG
1 AAGAAAGAAAAACAGAG
8092891 AAGAAAGAAGAAACAGAG
1 AAGAAAGAA-AAACAGAG
8092909 AA-AAAGAAA
1 AAGAAAGAAA
8092918 GAAAATTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 15 0.62
18 8 0.33
ACGTcount: A:0.70, C:0.02, G:0.27, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAAACAGAG
Found at i:8092899 original size:21 final size:19
Alignment explanation
Indices: 8092871--8092922 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
8092861 GAAAAAATAA
*
8092871 AAAAAGAAAGAAAAGGAGAG
1 AAAAAGAAAGAAAA-CAGAG
8092891 AAGAAAG-AAG-AAACAGAG
1 AA-AAAGAAAGAAAACAGAG
8092909 AAAAAGAAAGAAAA
1 AAAAAGAAAGAAAA
8092923 TTTTCCCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 4 0.14
18 9 0.32
19 6 0.21
20 5 0.18
21 4 0.14
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAGAAAACAGAG
Found at i:8093665 original size:17 final size:17
Alignment explanation
Indices: 8093637--8093671 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8093627 TTTGTAATTT
8093637 ATGAATTGTG-AATAAA
1 ATGAATTGTGAAATAAA
8093653 ATGAATATGTGAAATAAA
1 ATGAAT-TGTGAAATAAA
8093671 A
1 A
8093672 ATGTAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 4 0.24
18 7 0.41
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (17 bp):
ATGAATTGTGAAATAAA
Found at i:8096014 original size:32 final size:32
Alignment explanation
Indices: 8095968--8096035 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
8095958 AAGGTGCACA
* * *
8095968 ACATGACATTTCTTCAACTTCCATCCGCTATT
1 ACATGACATATCTTCAACTTCCATCCACCATT
8096000 ACATGACATATCTTCAACTTCCATCCACCATT
1 ACATGACATATCTTCAACTTCCATCCACCATT
8096032 ACAT
1 ACAT
8096036 ACCTCCACAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.32, G:0.04, T:0.34
Consensus pattern (32 bp):
ACATGACATATCTTCAACTTCCATCCACCATT
Found at i:8097234 original size:197 final size:197
Alignment explanation
Indices: 8096899--8097294 Score: 659
Period size: 197 Copynumber: 2.0 Consensus size: 197
8096889 GTTCTTTATC
* * *
8096899 ATAATATTTCCCACTAAAGTAAATGCTCAGTTCTAATTTAACGAAACTAATAGTTGAAATCTGAC
1 ATAATATTTCCCACTAAAGCAAATCCTCAGTTCTAATGTAACGAAACTAATAGTTGAAATCTGAC
8096964 CAATTACCAAATCAGTTAGCAAGATTCACATAATTACACTAAGACCCTTATAAACAGAAAGTTTT
66 CAATTACCAAATCAGTTAGCAAGATTCACATAATTACACTAAGACCCTTATAAACAGAAAGTTTT
* *
8097029 ATAATTAGATACCTAGAATTACTGTTGTACTTATCCTTTAACATTTTTGGGTGTGACATAAGTGT
131 ATAATTAGATACCCAAAATTACTGTTGTACTTATCCTTTAACATTTTTGGGTGTGACATAAGTGT
8097094 TT
196 TT
*
8097096 ATAATATTTCCCACTAAAGCAAATACCT-AGTTCTAATGTAACGAAACTAATAGTTGAAATCTGG
1 ATAATATTTCCCACTAAAGCAAAT-CCTCAGTTCTAATGTAACGAAACTAATAGTTGAAATCTGA
** * * *
8097160 CCAATTACCAAATCAGTTAGCAAGATTCATGTAATTACACTAATACCCTTATAAATAGGAAGTTT
65 CCAATTACCAAATCAGTTAGCAAGATTCACATAATTACACTAAGACCCTTATAAACAGAAAGTTT
* *
8097225 TATAATTAGATACCCAAAATTACTGTTGTACTTCTCTTTTAACATTTTTGGGTGTGACATAAGTG
130 TATAATTAGATACCCAAAATTACTGTTGTACTTATCCTTTAACATTTTTGGGTGTGACATAAGTG
8097290 TTT
195 TTT
8097293 AT
1 AT
8097295 GTTATGTTTG
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
197 183 0.99
198 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (197 bp):
ATAATATTTCCCACTAAAGCAAATCCTCAGTTCTAATGTAACGAAACTAATAGTTGAAATCTGAC
CAATTACCAAATCAGTTAGCAAGATTCACATAATTACACTAAGACCCTTATAAACAGAAAGTTTT
ATAATTAGATACCCAAAATTACTGTTGTACTTATCCTTTAACATTTTTGGGTGTGACATAAGTGT
TT
Done.