Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 34 of 161
Found at i:10526475 original size:29 final size:31
Alignment explanation
Indices: 10526407--10526476 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
10526397 GTTATTTAGC
* *
10526407 AAAGCGCCGCAAATATTTTTAGCGGCGCTAA
1 AAAGCCCCGCAAATACTTTTAGCGGCGCTAA
10526438 AAAGCCCCGCAAATACTTTTAGC-G-GCTAA
1 AAAGCCCCGCAAATACTTTTAGCGGCGCTAA
10526467 AAAGCCCCGC
1 AAAGCCCCGC
10526477 TAAAGGCCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 15 0.41
30 1 0.03
31 21 0.57
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.19
Consensus pattern (31 bp):
AAAGCCCCGCAAATACTTTTAGCGGCGCTAA
Found at i:10527887 original size:43 final size:45
Alignment explanation
Indices: 10527840--10528038 Score: 135
Period size: 43 Copynumber: 4.3 Consensus size: 45
10527830 AAAATGAATA
* *
10527840 AAATTATAAAAATGTAAAAAGATATAT-A-TATGTACATATATAT
1 AAATTATAAAAATATAAAAAGATATATAAGTATGTATATATATAT
* * *
10527883 AAATTATAAGATATAATAAAAA-AAATATAAGCATGTATATATATATTTAT
1 AAATTATAA-AAAT-ATAAAAAGATATATAAGTATG--TATATATA--TAT
* * * *
10527933 GAAAATTA-AAAATATGTATATAGATATAT-A-TATAG-ATATGTATAT
1 --AAATTATAAAA-ATATAAAAAGATATATAAGTAT-GTATATATATAT
*
10527978 AAATTAT-AAAATATAAAATATATATATAAGTACGTGTATATATATAT
1 AAATTATAAAAATATAAAA-AGATATATAAGTA--TGTATATATATAT
10528025 AAATTATAAAAATA
1 AAATTATAAAAATA
10528039 ATATACGTAT
Statistics
Matches: 118, Mismatches: 17, Indels: 37
0.69 0.10 0.22
Matches are distributed among these distances:
42 5 0.04
43 25 0.21
44 9 0.08
45 12 0.10
46 4 0.03
47 23 0.19
48 13 0.11
49 2 0.02
50 10 0.08
51 9 0.08
52 6 0.05
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (45 bp):
AAATTATAAAAATATAAAAAGATATATAAGTATGTATATATATAT
Found at i:10527950 original size:95 final size:95
Alignment explanation
Indices: 10527839--10528024 Score: 234
Period size: 95 Copynumber: 1.9 Consensus size: 95
10527829 GAAAATGAAT
*
10527839 AAAATTATAAAAATGTAAAAAGATATATATAT-GTACATATATATAAATTATAAGATATAATAAA
1 AAAATTATAAAAATGTAAAAAGATATATATATAG-ACATATATATAAATTATAAAATATAA-AAA
10527903 AAAAATATAAG-CATGTATATATATATTTATG
64 AAAAATATAAGACATGTATATATATATTTATG
* * * * *
10527934 AAAATTA-AAAATATGTATATAGATATATATATAGATATGTATATAAATTATAAAATATAAAATA
1 AAAATTATAAAA-ATGTAAAAAGATATATATATAGACATATATATAAATTATAAAATATAAAAAA
* * *
10527998 TATATATAAGTACGTGTATATATATAT
65 AAAATATAAG-ACATGTATATATATAT
10528025 AAATTATAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
94 15 0.19
95 48 0.62
96 15 0.19
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (95 bp):
AAAATTATAAAAATGTAAAAAGATATATATATAGACATATATATAAATTATAAAATATAAAAAAA
AAATATAAGACATGTATATATATATTTATG
Found at i:10527964 original size:12 final size:12
Alignment explanation
Indices: 10527944--10527978 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
10527934 AAAATTAAAA
10527944 ATATGTATATAG
1 ATATGTATATAG
*
10527956 ATATATATATAG
1 ATATGTATATAG
10527968 ATATGTATATA
1 ATATGTATATA
10527979 AATTATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (12 bp):
ATATGTATATAG
Found at i:10527999 original size:39 final size:39
Alignment explanation
Indices: 10527956--10528043 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 39
10527946 ATGTATATAG
10527956 ATATATATAT-AGATA-TGTATATAAATTATAAAATATAAA
1 ATATATATATAAG-TACTGTATATAAA-TATAAAATATAAA
* *
10527995 ATATATATATAAGTACGTGTATATATATATAAATTATAAA
1 ATATATATATAAGTAC-TGTATATAAATATAAAATATAAA
10528035 A-ATA-ATATA
1 ATATATATATA
10528044 CGTATATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
38 5 0.11
39 15 0.34
40 15 0.34
41 9 0.20
ACGTcount: A:0.55, C:0.01, G:0.06, T:0.39
Consensus pattern (39 bp):
ATATATATATAAGTACTGTATATAAATATAAAATATAAA
Found at i:10528042 original size:24 final size:22
Alignment explanation
Indices: 10528017--10528059 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10528007 GTACGTGTAT
* *
10528017 ATATATATAAATTATAAAAATA
1 ATATACATATATTATAAAAATA
*
10528039 ATATACGTATATTATAAAAAT
1 ATATACATATATTATAAAAAT
10528060 GTATGCATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATACATATATTATAAAAATA
Found at i:10528063 original size:47 final size:46
Alignment explanation
Indices: 10527968--10528063 Score: 106
Period size: 47 Copynumber: 2.0 Consensus size: 46
10527958 ATATATATAG
* **
10527968 ATATGTATATAAATTATAAAATATAAAATATATATATAAGTACGTGT
1 ATATATATATAAATTATAAAATATAAAATATATATATAAG-AAATGT
*
10528015 ATATATATATAAATTATAAAA-ATAATATACGTATATTATAA-AAATGT
1 ATATATATATAAATTATAAAATATAAAATA--TATA-TATAAGAAATGT
10528062 AT
1 AT
10528064 GCATGTATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
46 7 0.17
47 26 0.62
48 4 0.10
49 5 0.12
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (46 bp):
ATATATATATAAATTATAAAATATAAAATATATATATAAGAAATGT
Found at i:10532099 original size:90 final size:90
Alignment explanation
Indices: 10531849--10532089 Score: 277
Period size: 90 Copynumber: 2.7 Consensus size: 90
10531839 ATTTTTTGAT
* * * * *
10531849 AGCTTTTATCTGCAAATATGTTGTGCATTCACAACTATCTGACTGTGTATTAACCTACAATACTA
1 AGCTTTCATCTACAAATAAGTTGTGCATTCACAACCATCTGACAGTGTATTAACCTACAATACTA
**
10531914 GTGGTTCATCCACCCATTTTCTGGC
66 GTGGTTCATCCACCCACATTCTGGC
* * * ** * *
10531939 AGCTTTTATCTACAAATACA-TTGTGCATTCATAACCATCTGGCAGCATATTAACCTGCAACACT
1 AGCTTTCATCTACAAATA-AGTTGTGCATTCACAACCATCTGACAGTGTATTAACCTACAATACT
* *
10532003 GGTGGTTCATCCGCCCACATTCTGGC
65 AGTGGTTCATCCACCCACATTCTGGC
* * * * *
10532029 AGCTTTCATTTCCAAATAAGTTGCGCATTCACAACCATTTGTCAGTGTATTAACCTACAAT
1 AGCTTTCATCTACAAATAAGTTGTGCATTCACAACCATCTGACAGTGTATTAACCTACAAT
10532090 TTTCGTGGTT
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
89 1 0.01
90 123 0.99
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (90 bp):
AGCTTTCATCTACAAATAAGTTGTGCATTCACAACCATCTGACAGTGTATTAACCTACAATACTA
GTGGTTCATCCACCCACATTCTGGC
Found at i:10535835 original size:15 final size:16
Alignment explanation
Indices: 10535817--10535854 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
10535807 AAGATATTTT
10535817 AACAAATGAAATTAA-
1 AACAAATGAAATTAAC
10535832 AACAAATGAAATTAAC
1 AACAAATGAAATTAAC
10535848 AACAAAT
1 AACAAAT
10535855 ATGATGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (16 bp):
AACAAATGAAATTAAC
Found at i:10536694 original size:17 final size:17
Alignment explanation
Indices: 10536672--10536707 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
10536662 AACATAAATT
*
10536672 TATTGATGTTAATCAAA
1 TATTGATATTAATCAAA
10536689 TATTGATATTAATCAAA
1 TATTGATATTAATCAAA
10536706 TA
1 TA
10536708 CCTAATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (17 bp):
TATTGATATTAATCAAA
Found at i:10540193 original size:14 final size:14
Alignment explanation
Indices: 10540176--10540219 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
10540166 TTCATAATCT
10540176 ATATATTTTAATAC
1 ATATATTTTAATAC
10540190 --ATATTTTAATAC
1 ATATATTTTAATAC
*
10540202 TTATATTTTAATAC
1 ATATATTTTAATAC
10540216 ATAT
1 ATAT
10540220 TTTATAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 12 0.44
14 15 0.56
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATATTTTAATAC
Found at i:10540195 original size:12 final size:12
Alignment explanation
Indices: 10540178--10540223 Score: 74
Period size: 12 Copynumber: 3.7 Consensus size: 12
10540168 CATAATCTAT
10540178 ATATTTTAATAC
1 ATATTTTAATAC
10540190 ATATTTTAATAC
1 ATATTTTAATAC
10540202 TTATATTTTAATAC
1 --ATATTTTAATAC
10540216 ATATTTTA
1 ATATTTTA
10540224 TAATCTATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 20 0.62
14 12 0.38
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (12 bp):
ATATTTTAATAC
Found at i:10540199 original size:26 final size:28
Alignment explanation
Indices: 10540164--10540235 Score: 105
Period size: 26 Copynumber: 2.6 Consensus size: 28
10540154 GTAATCATTA
*
10540164 ATTTCATAATCTATATATTTTAATACAT
1 ATTTTATAATCTATATATTTTAATACAT
10540192 A-TTT-TAATACT-TATATTTTAATACAT
1 ATTTTATAAT-CTATATATTTTAATACAT
10540218 ATTTTATAATCTATATAT
1 ATTTTATAATCTATATAT
10540236 ATCTATATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
26 20 0.51
27 9 0.23
28 10 0.26
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTTTATAATCTATATATTTTAATACAT
Found at i:10540227 original size:14 final size:13
Alignment explanation
Indices: 10540176--10540227 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
10540166 TTCATAATCT
10540176 ATATATTTTAATAC
1 ATAT-TTTTAATAC
10540190 ATA-TTTTAATAC
1 ATATTTTTAATAC
*
10540202 TTATATTTTAATAC
1 ATAT-TTTTAATAC
10540216 ATATTTTATAAT
1 ATATTTT-TAAT
10540228 CTATATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 11 0.33
13 3 0.09
14 19 0.58
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTTAATAC
Found at i:10551707 original size:25 final size:26
Alignment explanation
Indices: 10551661--10551709 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
10551651 TAAATTTGTT
10551661 TGTTCTTGCAATACTTTATTCTTTGC
1 TGTTCTTGCAATACTTTATTCTTTGC
* *
10551687 TGTTCTTG-AATATTTTTTTCTTT
1 TGTTCTTGCAATACTTTATTCTTT
10551710 TCAAGACACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.14, C:0.14, G:0.10, T:0.61
Consensus pattern (26 bp):
TGTTCTTGCAATACTTTATTCTTTGC
Found at i:10552681 original size:44 final size:43
Alignment explanation
Indices: 10552618--10552901 Score: 225
Period size: 44 Copynumber: 6.5 Consensus size: 43
10552608 GAAGATGGCG
10552618 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* ** **
10552662 AATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * ** ** * * *
10552705 AAATCTTATCTCTCTGAAGTTGTAGTATATTAGATCATATC-A-
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* ** *
10552747 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCAAT
* *
10552792 AATCTTATCT-CCTGAGGTTGCAGTGGAGTAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * ***
10552835 AATCCTATCTCCATGAAGTTGCAGTGGAGCGGATTAAAATGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
**
10552878 AGATCTTATCTTTCTGAAGTTGCA
1 A-ATCTTATCTCCCTGAAGTTGCA
10552902 AAGAGTAGAT
Statistics
Matches: 186, Mismatches: 45, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
41 27 0.15
42 5 0.03
43 18 0.10
44 126 0.68
45 10 0.05
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:10552852 original size:129 final size:129
Alignment explanation
Indices: 10552620--10552855 Score: 293
Period size: 129 Copynumber: 1.8 Consensus size: 129
10552610 AGATGGCGAA
** *
10552620 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAGCCAATAATCCTATCTCCCTGAAGTTACA
** *
10552685 GTGGAGCAGATTAAAGTGATAAATCTTATCTCTCTGAAGTTGTAGTATATTAGATCATATCAAG
66 GTGGAGCAGATTAAAGCAATAAATCCTATCTCTCTGAAGTTGTAGTATATTAGATCATATCAAG
* * *
10552749 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATG-GAA-AATCTTATCT-CCTGAGGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CCAA-A-GCCAATAATCCTATCTCCCTGAAGTT
* *
10552811 GCAGTGGAGTAGATTAAAGCCAAT-AATCCTATCTC-CATGAAGTTG
63 ACAGTGGAGCAGATTAAAG-CAATAAATCCTATCTCTC-TGAAGTTG
10552856 CAGTGGAGCG
Statistics
Matches: 91, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
128 1 0.01
129 73 0.80
130 13 0.14
131 3 0.03
132 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAGCCAATAATCCTATCTCCCTGAAGTTACA
GTGGAGCAGATTAAAGCAATAAATCCTATCTCTCTGAAGTTGTAGTATATTAGATCATATCAAG
Found at i:10552854 original size:173 final size:173
Alignment explanation
Indices: 10552569--10552996 Score: 524
Period size: 173 Copynumber: 2.5 Consensus size: 173
10552559 GACTCAGGTA
* * * ** **
10552569 AGCAAGTCTTATC-CTTCTGAAGTTGCGGTGGGGCAGACTGAAGATGGCGAATCTTATCTCCCTG
1 AGCAAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAAAATCTTATCTCCCTG
* *
10552633 AAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTA
65 AAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCATGAAGTTACAGTGGAGCAGATTA
* * * * *
10552698 AAGTGATAAATCTTATCTCTCTGAAGTTGTAGTATATTAGATCAT
130 AAATGATAAATCTTATCTCTCTGAAGTTGCA-AAGAGTAGATCAT
*
10552743 ATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAAAATCTTATCT-CCTGA
1 AGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAAAATCTTATCTCCCTGA
* * * *
10552807 GGTTGCAGTGGAGTAGATTAAAGCCAATAATCCTATCTCCATGAAGTTGCAGTGGAGCGGATTAA
66 AGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCATGAAGTTACAGTGGAGCAGATTAA
* *
10552872 AATGATAGATCTTATCTTTCTGAAGTTGCAAAGAGTAGATCAT
131 AATGATAAATCTTATCTCTCTGAAGTTGCAAAGAGTAGATCAT
* * * * * *
10552915 AGCATGTCTTATCTCCTTGAAGATGTAGTGGAGTAGACCCAAGA---AAACGAGTCTTATTTCCC
1 AGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAAA--A-TCTTATCTCCC
*
10552977 TGAAGATGCAGTGGAGCAGA
63 TGAAGTTGCAGTGGAGCAGA
10552997 CTCAAGAAAG
Statistics
Matches: 218, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
169 3 0.01
171 1 0.00
172 55 0.25
173 109 0.50
174 49 0.22
175 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (173 bp):
AGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGATGGAAAATCTTATCTCCCTGA
AGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCATGAAGTTACAGTGGAGCAGATTAA
AATGATAAATCTTATCTCTCTGAAGTTGCAAAGAGTAGATCAT
Found at i:10552971 original size:45 final size:45
Alignment explanation
Indices: 10552920--10553035 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
10552910 ATCATAGCAT
* * * *
10552920 GTCTTATCTCCTTGAAGATGTAGTGGAGTAGACCCAAGAAAACGA
1 GTCTTATCTCCCTGAAGATGCAGTGGAGCAGACCCAAGAAAACAA
* * *
10552965 GTCTTATTTCCCTGAAGATGCAGTGGAGCAGACTCAAGAAAGCAA
1 GTCTTATCTCCCTGAAGATGCAGTGGAGCAGACCCAAGAAAACAA
*
10553010 GTCTTATCCCCCTGAA-ATTGCAGTGG
1 GTCTTATCTCCCTGAAGA-TGCAGTGG
10553036 GGCAAACTGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 60 0.98
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGATGCAGTGGAGCAGACCCAAGAAAACAA
Found at i:10554754 original size:20 final size:21
Alignment explanation
Indices: 10554717--10554757 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10554707 TATATAATCA
10554717 TTATTTTCATAATCTATATAT
1 TTATTTTCATAATCTATATAT
10554738 TTATTTT-ATAA-CTTATATAT
1 TTATTTTCATAATC-TATATAT
10554758 GTACATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 11 0.58
21 7 0.37
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATTTTCATAATCTATATAT
Found at i:10565781 original size:19 final size:17
Alignment explanation
Indices: 10565757--10565800 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
10565747 TAACAACATA
*
10565757 AATAATAAAATGAAATGAC
1 AATAATAAAACG-AAT-AC
*
10565776 AATAATATAACGAATAC
1 AATAATAAAACGAATAC
10565793 AATAATAA
1 AATAATAA
10565801 GAAATAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
18 3 0.14
19 10 0.45
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.23
Consensus pattern (17 bp):
AATAATAAAACGAATAC
Found at i:10567715 original size:41 final size:41
Alignment explanation
Indices: 10567665--10567770 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
10567655 ACGTCAGCAA
*
10567665 ATCGCGCTGACGTGGACGCGATTTCCTG-CGCGTACCCTGAC
1 ATCGCGCTGACGTGGACGCGATTT-CTGCCCCGTACCCTGAC
* *
10567706 ATCGCGCTGACGTGGACGCGACCTTCTGCCCCGTCCCCTGAC
1 ATCGCGCTGACGTGGACGCGA-TTTCTGCCCCGTACCCTGAC
* * *
10567748 ATCGCTCCGACGTGG-CACGATTT
1 ATCGCGCTGACGTGGACGCGATTT
10567771 TGGGGGAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
40 2 0.04
41 28 0.50
42 26 0.46
ACGTcount: A:0.14, C:0.37, G:0.27, T:0.22
Consensus pattern (41 bp):
ATCGCGCTGACGTGGACGCGATTTCTGCCCCGTACCCTGAC
Found at i:10567760 original size:42 final size:41
Alignment explanation
Indices: 10567665--10567762 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 41
10567655 ACGTCAGCAA
* * *
10567665 ATCGCGCTGACGTGGACGCGATTTCCTGCGCGTACCCTGAC
1 ATCGCGCCGACGTGGACGCGACTTCCTGCCCGTACCCTGAC
* *
10567706 ATCGCGCTGACGTGGACGCGACCTT-CTGCCCCGTCCCCTGAC
1 ATCGCGCCGACGTGGACGCGA-CTTCCTG-CCCGTACCCTGAC
*
10567748 ATCGCTCCGACGTGG
1 ATCGCGCCGACGTGG
10567763 CACGATTTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 24 0.48
42 26 0.52
ACGTcount: A:0.13, C:0.38, G:0.29, T:0.20
Consensus pattern (41 bp):
ATCGCGCCGACGTGGACGCGACTTCCTGCCCGTACCCTGAC
Found at i:10573718 original size:14 final size:13
Alignment explanation
Indices: 10573701--10573741 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
10573691 AATATTTCAA
10573701 AAAAAAAGAAGAAG
1 AAAAAAAGAA-AAG
10573715 AAAAAAAGAAAAG
1 AAAAAAAGAAAAG
10573728 AAAAAGAA-AAAAG
1 AAAAA-AAGAAAAG
10573741 A
1 A
10573742 GAAGCCAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAG
Found at i:10573726 original size:19 final size:19
Alignment explanation
Indices: 10573699--10573744 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
10573689 AAAATATTTC
*
10573699 AAAAA-AAAAGAAGAAGAA
1 AAAAAGAAAAGAAAAAGAA
10573717 AAAAAGAAAAGAAAAAGAA
1 AAAAAGAAAAGAAAAAGAA
10573736 AAAAGAGAA
1 AAAA-AGAA
10573745 GCCAAGGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.20
19 16 0.64
20 4 0.16
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAAGAA
Found at i:10575227 original size:51 final size:51
Alignment explanation
Indices: 10575082--10575227 Score: 132
Period size: 51 Copynumber: 2.9 Consensus size: 51
10575072 CTGAAGTGGG
* ** * *
10575082 GCAGATTAAAGCTGAAGGCAGCGAATCCCATCTCCTTGGCGTTACACTGGA
1 GCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTAGCGTTACACTGGA
* * * * * * * **
10575133 ACATATCAAAGCTAAAAGTAGCGAATCTTGTTTCCCTTTCGTTACAGC-GGA
1 GCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTAGCGTTACA-CTGGA
* *
10575184 GCAGATTAAAGTTGAAGGTAGCAAATCTTATCTCCCTAGCGTTA
1 GCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTAGCGTTA
10575228 AAGTTGAAGA
Statistics
Matches: 70, Mismatches: 24, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
51 69 0.99
52 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (51 bp):
GCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCCCTAGCGTTACACTGGA
Found at i:10575305 original size:51 final size:51
Alignment explanation
Indices: 10575241--10575338 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
10575231 TTGAAGACAA
* *
10575241 CGAATATTATTTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAG
1 CGAATATTATTTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGTAG
* * *
10575292 CGAATCTTGTTTCCCTGGCATTACAGTGGAATAGATTAAAGCTAAAG
1 CGAATATTATTTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAG
10575339 TGGAGAGGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (51 bp):
CGAATATTATTTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGTAG
Found at i:10575342 original size:21 final size:21
Alignment explanation
Indices: 10575316--10575355 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10575306 CTGGCATTAC
10575316 AGTGGA-ATAGATTAAAGCTAA
1 AGTGGAGA-AGATTAAAGCTAA
*
10575337 AGTGGAGAGGATTAAAGCT
1 AGTGGAGAAGATTAAAGCT
10575356 GAAGGTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (21 bp):
AGTGGAGAAGATTAAAGCTAA
Found at i:10575537 original size:44 final size:44
Alignment explanation
Indices: 10575470--10576077 Score: 389
Period size: 44 Copynumber: 13.5 Consensus size: 44
10575460 GATAACAAAC
* * *
10575470 CTTATCTCTCTGAAGCTGCAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * **
10575514 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCTATTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * *
10575558 CGTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGAT--GAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAA-GATACCAAT
* * * * * *
10575602 CCTATAC-CTCTAAAGTTGTAGTAGG-TCAGATT-AAGTCTACCATAACAAGT
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAG------ATACCAA-T
* * * * *
10575652 CTTATCTCTCTGAAGTTGCAGTGAAGCAGATTTAAGATAAACAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACCAAT
* *
10575697 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * **
10575741 CTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * *
10575785 CCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGAT--GAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAA-GATACCAAT
* * * * * *
10575829 CATATAC-CTCTAAAGTTGCAGTAGG-TCGGATT-AAGTCTACCATAACAAGT
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAG------ATACCAA-T
* *
10575879 CTTATCTCTCC-GAAGTTGCAGTGGAGCAGACTGAAGATAACCAAC
1 CTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACCAAT
* *
10575924 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAATATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* **
10575968 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * * * *
10576012 CCTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAACGAT--GAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAA-GATACCAAT
10576056 CTTATAC-CCCTGAAGTTGCAGT
1 CTTAT-CTCCCTGAAGTTGCAGT
10576078 AGGTCAGATT
Statistics
Matches: 443, Mismatches: 82, Indels: 78
0.73 0.14 0.13
Matches are distributed among these distances:
41 2 0.00
42 4 0.01
44 276 0.62
45 82 0.19
46 15 0.03
47 4 0.01
49 9 0.02
50 44 0.10
51 7 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
Found at i:10575767 original size:227 final size:227
Alignment explanation
Indices: 10575452--10576144 Score: 1073
Period size: 227 Copynumber: 3.1 Consensus size: 227
10575442 GAGCAGATCA
* * *
10575452 AGACTAAAGAT-AACAAACCTTATCTCTCTGAAGCTGCAGTGGAGCAGGTTGAAGATACCAATCT
1 AGACTGAAGATAAAC-AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCT
* * *
10575516 TATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCTATTAATCGTATCTCCCTGAAGTTGCAGTG
65 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTG
* * *
10575581 GAGCGGATTAAAACGATGAATCCTATACCTCTAAAGTTGTAGTAGGTCAGATTAAGTCTACCATA
130 GAGCAGATTAAAACGATGAATCATATACCTCTAAAGTTGCAGTAGGTCAGATTAAGTCTACCATA
*
10575646 ACAAGTCTTATCTCTCTGAAGTTGCAGTGAAGC
195 ACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
* * *
10575679 AGATTTAAGATAAACAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGATACCAATCTT
1 AGACTGAAGATAAACAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTT
* * *
10575744 ATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGTAGTGG
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGG
*
10575809 AGCAGATTAAAACGATGAATCATATACCTCTAAAGTTGCAGTAGGTCGGATTAAGTCTACCATAA
131 AGCAGATTAAAACGATGAATCATATACCTCTAAAGTTGCAGTAGGTCAGATTAAGTCTACCATAA
*
10575874 CAAGTCTTATCTCTCCGAAGTTGCAGTGGAGC
196 CAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
* *
10575906 AGACTGAAGATAACCAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAATATACCAATCTT
1 AGACTGAAGATAAACAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTT
* *
10575971 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCTCTGAAGTTGCAGTAG
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGG
* * * * * *
10576036 AGCAAATTAAAACGATGAATCTTATACCCCTGAAGTTGCAGTAGGTCAGATTAAATCTACCATAT
131 AGCAGATTAAAACGATGAATCATATACCTCTAAAGTTGCAGTAGGTCAGATTAAGTCTACCATAA
* * * *
10576101 CGAGTCTTATCTCCCTAAAGTTGTAGTGGAGC
196 CAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
*
10576133 AGACTGTAGATA
1 AGACTGAAGATA
10576145 GCGGATCTTA
Statistics
Matches: 425, Mismatches: 40, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
227 422 0.99
228 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (227 bp):
AGACTGAAGATAAACAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTT
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGG
AGCAGATTAAAACGATGAATCATATACCTCTAAAGTTGCAGTAGGTCAGATTAAGTCTACCATAA
CAAGTCTTATCTCTCTGAAGTTGCAGTGGAGC
Found at i:10575817 original size:183 final size:181
Alignment explanation
Indices: 10575425--10576033 Score: 505
Period size: 183 Copynumber: 3.4 Consensus size: 181
10575415 GAATCTTGTT
* * * * * *
10575425 TCCCTGACGTTGCAGCGGAGCAGATCAAGACTAAAGATAACAAACCTTATCTCTCTGAAGCTGCA
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAG-CT-ACGATAAC-AATCTTATCTCTCTGAAGTTGCA
* * * * * * * *
10575490 GTGGAGCAGGTTGAAGAT-ACCAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCTAT
63 GTGAAGCAGATTTAAGATAAACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * * *
10575554 TAATCGTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATGAATCCTATAC
128 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACTATCAATCCTAT-C
* * * * *
10575609 -CTCTAAAGTTGTAGTAGG-TCAGATTAAGTCTACCATAACAAGTCTTATCTCTCTGAAGTTGCA
1 TCCCTGAAGTTGCAGT-GGAGCAGATTAAG-CTACGATAACAA-TCTTATCTCTCTGAAGTTGCA
* * *
10575672 GTGAAGCAGATTTAAGATAAACAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGATAC
63 GTGAAGCAGATTTAAGATAAACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * *
10575737 CAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATC
128 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACTATCAATCCTATC
* * * * *
10575791 TCCCTGAAGTTGTAGTGGAGCAGATTAA--AACGAT--GAATCATATAC-CTCTAAAGTTGCAGT
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAGCTACGATAACAATCTTAT-CTCTCTGAAGTTGCAGT
* * * *
10575851 -AGGTCGGA-TTAAGTCTACCATAACAAGTCTTATCTCTCC-GAAGTTGCAGTGGAGCAGACTGA
65 GAAG-CAGATTTAAG---A-TA-AACAA-TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTGA
* * * *
10575913 AGATAACCAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAATA-TACCAATCTTATC
122 AGAT-ACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-ACTATCAATCCTATC
* *
10575974 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT---AT--TAATCCTATCTCTCTGAAGTTGCAGT
1 TCCCTGAAGTTGCAGTGGAGCAGATT-AAGCTACGATAACAATCTTATCTCTCTGAAGTTGCAGT
10576034 AGAGCAAATT
Statistics
Matches: 345, Mismatches: 60, Indels: 41
0.77 0.13 0.09
Matches are distributed among these distances:
176 7 0.02
177 22 0.06
178 3 0.01
179 1 0.00
180 5 0.01
181 7 0.02
182 76 0.22
183 220 0.64
184 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (181 bp):
TCCCTGAAGTTGCAGTGGAGCAGATTAAGCTACGATAACAATCTTATCTCTCTGAAGTTGCAGTG
AAGCAGATTTAAGATAAACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAA
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACTATCAATCCTATC
Found at i:10579694 original size:14 final size:14
Alignment explanation
Indices: 10579686--10579722 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
10579676 TTATAAACAA
10579686 ATGTATATACACAT
1 ATGTATATACACAT
*
10579700 ATATATATACACAT
1 ATGTATATACACAT
10579714 ATGTATATA
1 ATGTATATA
10579723 TATTCGATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (14 bp):
ATGTATATACACAT
Found at i:10580825 original size:25 final size:25
Alignment explanation
Indices: 10580780--10580828 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
10580770 TATTTGTTTA
*
10580780 ATTATAATATTATAATATAATATAT
1 ATTATAACATTATAATATAATATAT
10580805 ATTATAACATTTATAAT-TAATATA
1 ATTATAACA-TTATAATATAATATA
10580829 AAAACTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATAACATTATAATATAATATAT
Found at i:10581771 original size:145 final size:144
Alignment explanation
Indices: 10581503--10581786 Score: 451
Period size: 145 Copynumber: 2.0 Consensus size: 144
10581493 AATCTCATAA
* *
10581503 GGTCTAATGAATCTCGGACTCAATTTGCCTTTACGACCAAATCTGAGTATTTTCTTCCACGGTGA
1 GGTCCAATGAATCTCGGACTCAATTTGCCTTTACGACCAAATCTGAGTACTTTCTTCCACGGTGA
* *
10581568 AACTTTCAAAAACACTTCGTCCCCGATCTAAAATTCTATATCCTTTCTTTTCAAATCCGCATAAG
66 AACTTTCAAAAACACTTCATCCCCGATCTAAAATTCTATATCCTTTCTTCTCAAATCCGCATAAG
*
10581633 ATTTTTGACTNATAC
131 ATTTCTGACT-ATAC
* *
10581648 GGTCCAATGAATCTTGGACTCAATTTGCCTTTACGACCGAATCTGAGTACTTTCTTCCACGGTGA
1 GGTCCAATGAATCTCGGACTCAATTTGCCTTTACGACCAAATCTGAGTACTTTCTTCCACGGTGA
* * * * *
10581713 GACTTTCAAAAACACTTTATCGCCGATCTGAAATTCTATATCTTTTCTTCTCAAATCCGCATAAG
66 AACTTTCAAAAACACTTCATCCCCGATCTAAAATTCTATATCCTTTCTTCTCAAATCCGCATAAG
10581778 ATTTCTGAC
131 ATTTCTGAC
10581787 GATCTGATGC
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
145 127 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (144 bp):
GGTCCAATGAATCTCGGACTCAATTTGCCTTTACGACCAAATCTGAGTACTTTCTTCCACGGTGA
AACTTTCAAAAACACTTCATCCCCGATCTAAAATTCTATATCCTTTCTTCTCAAATCCGCATAAG
ATTTCTGACTATAC
Found at i:10586685 original size:21 final size:21
Alignment explanation
Indices: 10586634--10586687 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
10586624 TATTCATCAA
* *
10586634 ATACTTAT-AAAAAAATGTAT
1 ATACTTATCAAATAAATATAT
***
10586654 ATACACCTCAAATAAATATAT
1 ATACTTATCAAATAAATATAT
10586675 ATACTTATCAAAT
1 ATACTTATCAAAT
10586688 GCATTTGCCG
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (21 bp):
ATACTTATCAAATAAATATAT
Found at i:10586739 original size:13 final size:13
Alignment explanation
Indices: 10586721--10586748 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10586711 ATCAATTGCT
10586721 TACCAAATGCATA
1 TACCAAATGCATA
10586734 TACCAAATGCATA
1 TACCAAATGCATA
10586747 TA
1 TA
10586749 TATTTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.25
Consensus pattern (13 bp):
TACCAAATGCATA
Found at i:10586990 original size:41 final size:41
Alignment explanation
Indices: 10586934--10587064 Score: 140
Period size: 41 Copynumber: 3.2 Consensus size: 41
10586924 TGATTCGGTA
* * *
10586934 CACCGGCTTTTAGCCTGCTAGACTTATAGTCCG-A-AATGTAT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAAT-T-T
*
10586975 CACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
* * * * *
10587016 CACCGGCATAAAGCCTGCTAGACATAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
*
10587057 CACTGGCA
1 CACCGGCA
10587065 ATAAATCAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 74 0.94
42 2 0.03
43 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
Found at i:10593566 original size:31 final size:32
Alignment explanation
Indices: 10593530--10593594 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
10593520 CTTAGATAAT
10593530 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
10593561 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
10593593 TT
1 TT
10593595 GTAATTTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:10593898 original size:3 final size:3
Alignment explanation
Indices: 10593890--10593921 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10593880 ATCTATCCTT
10593890 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10593922 TAACTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10598164 original size:31 final size:32
Alignment explanation
Indices: 10598128--10598193 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
10598118 CTTAGATAAT
*
10598128 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
10598159 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAAAGTTTTTATTAGGATTCAATTACTC
10598191 TTT
1 TTT
10598194 TAATTTGCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 8 0.24
32 25 0.76
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (32 bp):
TTTAAAAAGTTTTTATTAGGATTCAATTACTC
Found at i:10598493 original size:3 final size:3
Alignment explanation
Indices: 10598485--10598510 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10598475 ATCTATCCTT
10598485 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
10598511 TAACTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10599955 original size:69 final size:68
Alignment explanation
Indices: 10599823--10599955 Score: 212
Period size: 69 Copynumber: 1.9 Consensus size: 68
10599813 AGAACAAAAC
* * * *
10599823 CTTTAGTGGCGCTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCACAT
1 CTTTAGTGGCGCTTTCCCACAAACGCCCCTAAAGACCAAGACATTTAGCGGCGCATTTCCCACAT
10599888 GCT
66 GCT
*
10599891 CTTTAGTGGCGCTTTTCCCACAAACGCCCCTAAAGACCAAGACATTTAGCGGTGCATTTCCCACA
1 CTTTAGTGGCGC-TTTCCCACAAACGCCCCTAAAGACCAAGACATTTAGCGGCGCATTTCCCACA
10599956 AACACCGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
68 12 0.20
69 47 0.80
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (68 bp):
CTTTAGTGGCGCTTTCCCACAAACGCCCCTAAAGACCAAGACATTTAGCGGCGCATTTCCCACAT
GCT
Found at i:10602836 original size:42 final size:42
Alignment explanation
Indices: 10602789--10602951 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
10602779 AAATTGCCGC
* * *
10602789 TAAAGACCATGTTCTTTAGCGGCGTTTTTTCTTACGCGCCAA
1 TAAAGAACATGATCTTTAGCGGCGTTTTTTCTTAAGCGCCAA
* * * **
10602831 TAAAGAACATGGTCTTTAGCGACGTTTTGTCTTAAGCGCCGC
1 TAAAGAACATGATCTTTAGCGGCGTTTTTTCTTAAGCGCCAA
* **
10602873 TAAAGAACATGATCTTTAGCGGCGTTTTTT-TCCAAGCGCCGG
1 TAAAGAACATGATCTTTAGCGGCGTTTTTTCT-TAAGCGCCAA
* * *
10602915 TAAAGAACATTATCTTTAGCAGCATTTTTT-TTAAGCG
1 TAAAGAACATGATCTTTAGCGGCGTTTTTTCTTAAGCG
10602952 TCGCTAAAGA
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
41 6 0.06
42 98 0.94
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
TAAAGAACATGATCTTTAGCGGCGTTTTTTCTTAAGCGCCAA
Found at i:10602912 original size:84 final size:83
Alignment explanation
Indices: 10602784--10602961 Score: 216
Period size: 84 Copynumber: 2.1 Consensus size: 83
10602774 AAACAAAATT
* * * * *
10602784 GCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTTCTTACGCGCCAATAAAGAACATGGTCTTTA
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTCAAGCGCCAATAAAGAACATGATCTTTA
*
10602849 GC-GACGTTTTGTCTTAAGC
66 GCAG-CATTTT-TCTTAAGC
** *
10602868 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT-TCCAAGCGCCGGTAAAGAACATTATCTTT
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCT-CAAGCGCCAATAAAGAACATGATCTTT
*
10602932 AGCAGCATTTTTTTTAAGC
65 AGCAGCATTTTTCTTAAGC
*
10602951 GTCGCTAAAGA
1 GCCGCTAAAGA
10602962 TTTAGTGGCG
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
83 18 0.22
84 62 0.77
85 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (83 bp):
GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTCAAGCGCCAATAAAGAACATGATCTTTA
GCAGCATTTTTCTTAAGC
Found at i:10603207 original size:21 final size:21
Alignment explanation
Indices: 10603183--10603229 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10603173 TTAACTATTT
* *
10603183 AAATTAGTTAATGATATTGTA
1 AAATTAGATAATGAAATTGTA
* *
10603204 AAATTAGATGATTAAATTGTA
1 AAATTAGATAATGAAATTGTA
10603225 AAATT
1 AAATT
10603230 TCAAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (21 bp):
AAATTAGATAATGAAATTGTA
Found at i:10604864 original size:26 final size:26
Alignment explanation
Indices: 10604827--10604877 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10604817 GCTTTATGAT
* * *
10604827 TTCATGCGTGTATAAATATAAACCAC
1 TTCATGCATGTAAAAAGATAAACCAC
10604853 TTCATGCATGTAAAAAGATAAACCA
1 TTCATGCATGTAAAAAGATAAACCA
10604878 AACTTCAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (26 bp):
TTCATGCATGTAAAAAGATAAACCAC
Found at i:10606804 original size:47 final size:48
Alignment explanation
Indices: 10606715--10606813 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 48
10606705 AAAAATTTTG
* * *
10606715 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATATAAATTTTAGTGTT
* * *
10606762 TTTAAGTAGTATTTATAAAAATTGGGTAAAAATA-AAATTTTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATATAAA-TTTTAGTGTT
10606810 TTTA
1 TTTA
10606814 TTTCTTTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.05
47 36 0.82
48 6 0.14
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.46
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATATAAATTTTAGTGTT
Found at i:10606827 original size:11 final size:10
Alignment explanation
Indices: 10606808--10606860 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
10606798 ATTTTTAGTG
10606808 TTTTT-ATTT
1 TTTTTAATTT
10606817 CTTTTTAATTT
1 -TTTTTAATTT
*
10606828 TTTTTATTTT
1 TTTTTAATTT
*
10606838 TATTTTTATTT
1 T-TTTTAATTT
*
10606849 TTTATAATTT
1 TTTTTAATTT
10606859 TT
1 TT
10606861 ACAATTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 24 0.67
11 12 0.33
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:10606831 original size:20 final size:21
Alignment explanation
Indices: 10606808--10606851 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10606798 ATTTTTAGTG
10606808 TTTTTATTTCT-TTTTAATTT
1 TTTTTATTTCTATTTTAATTT
* *
10606828 TTTTTATTTTTATTTTTATTT
1 TTTTTATTTCTATTTTAATTT
10606849 TTT
1 TTT
10606852 ATAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTATTTCTATTTTAATTT
Found at i:10606837 original size:16 final size:16
Alignment explanation
Indices: 10606808--10606861 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
10606798 ATTTTTAGTG
10606808 TTTTTATTTCTTTTTAA
1 TTTTTATTT-TTTTTAA
10606825 TTTTT-TTTATTTTT-A
1 TTTTTATTT-TTTTTAA
*
10606840 TTTTTATTTTTTATAA
1 TTTTTATTTTTTTTAA
10606856 TTTTTA
1 TTTTTA
10606862 CAATTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 10 0.30
16 18 0.55
17 5 0.15
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTATTTTTTTTAA
Found at i:10606850 original size:22 final size:22
Alignment explanation
Indices: 10606818--10606861 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10606808 TTTTTATTTC
* *
10606818 TTTTTAATTTTTTTTATTTTTA
1 TTTTTAATTTTTATAATTTTTA
*
10606840 TTTTTATTTTTTATAATTTTTA
1 TTTTTAATTTTTATAATTTTTA
10606862 CAATTTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTAATTTTTATAATTTTTA
Found at i:10606868 original size:31 final size:32
Alignment explanation
Indices: 10606808--10606869 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
10606798 ATTTTTAGTG
* ***
10606808 TTTTTATTTCTTTTTAATTTTTTTTATTTTTA
1 TTTTTATTTCTTTATAATTTTTACAATTTTTA
10606840 TTTTTATTT-TTTATAATTTTTACAATTTTT
1 TTTTTATTTCTTTATAATTTTTACAATTTTT
10606870 TACAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTTTATTTCTTTATAATTTTTACAATTTTTA
Found at i:10607065 original size:81 final size:81
Alignment explanation
Indices: 10606983--10607296 Score: 290
Period size: 81 Copynumber: 3.7 Consensus size: 81
10606973 TATAAAGAAC
* * * * *
10606983 TTATTTAATATATAAATTAAAAAGTACTAATTAATCCAAATCTTAAACCCTAACTCGACCCGAAA
1 TTATTTAATATAT-AATTAAAAAGCACTAATTAATCTAAACCCTAAACCCTAACTCGACCCAAAA
10607048 TCCCTAACCCCTAAACT
65 TCCCTAACCCCTAAACT
10607065 TTATTTAATATATAATTAAAAAGCACTAATTAATCTAAACCCTAAACCCTAAACCTAAAACCCGA
1 TTATTTAATATATAATTAAAAAGCACTAATTAATCTAAACCCTAAACCCT-AA-CT------CGA
*
10607130 -CCACAAATACCTAACCCCTAACCCCTAAACT
58 CCCA-AAAT-CC---CT---AACCCCTAAACT
** * * * * * *
10607161 TTATTTAATATATAAATTAAAAAATAATAATTAATCTAAACCCTAAACCATAACCCAATCCTAAA
1 TTATTTAATATAT-AATTAAAAAGCACTAATTAATCTAAACCCTAAACCCTAACTCGACCCAAAA
*
10607226 TCCCTAACCCCTAAACC
65 TCCCTAACCCCTAAACT
* *
10607243 TTGTTTAATATATAATTAAAATA-CACTAATTAATCTAAACCCTAAACTCTAACT
1 TTATTTAATATATAATTAAAA-AGCACTAATTAATCTAAACCCTAAACCCTAACT
10607297 TAACACCGAA
Statistics
Matches: 192, Mismatches: 21, Indels: 39
0.76 0.08 0.15
Matches are distributed among these distances:
81 67 0.35
82 39 0.20
83 2 0.01
85 1 0.01
88 4 0.02
89 13 0.07
90 4 0.02
93 1 0.01
95 1 0.01
96 27 0.14
97 33 0.17
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.29
Consensus pattern (81 bp):
TTATTTAATATATAATTAAAAAGCACTAATTAATCTAAACCCTAAACCCTAACTCGACCCAAAAT
CCCTAACCCCTAAACT
Found at i:10607369 original size:14 final size:14
Alignment explanation
Indices: 10607340--10607382 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
10607330 TCTTAACATC
*
10607340 TAACCCCTAA-CC-
1 TAACCCATAACCCA
10607352 TAACCCATAACCCA
1 TAACCCATAACCCA
*
10607366 TAACCCTTAACCCA
1 TAACCCATAACCCA
10607380 TAA
1 TAA
10607383 ACCTTAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 16 0.59
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (14 bp):
TAACCCATAACCCA
Found at i:10607387 original size:14 final size:14
Alignment explanation
Indices: 10607359--10607389 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10607349 ACCTAACCCA
*
10607359 TAACCCATAACCCT
1 TAACCCATAAACCT
10607373 TAACCCATAAACCT
1 TAACCCATAAACCT
10607387 TAA
1 TAA
10607390 ATCACATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (14 bp):
TAACCCATAAACCT
Found at i:10607431 original size:14 final size:14
Alignment explanation
Indices: 10607412--10607443 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10607402 CTTAAACCGA
10607412 AATCCCTAATCCAT
1 AATCCCTAATCCAT
*
10607426 AATCCCTAATTCAT
1 AATCCCTAATCCAT
10607440 AATC
1 AATC
10607444 TATAAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (14 bp):
AATCCCTAATCCAT
Found at i:10607567 original size:15 final size:17
Alignment explanation
Indices: 10607547--10607578 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
10607537 AATGATAATT
10607547 AAATTAA-A-TATTTTA
1 AAATTAATACTATTTTA
10607562 AAATTAATACTATTTTA
1 AAATTAATACTATTTTA
10607579 TCTCTTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
AAATTAATACTATTTTA
Found at i:10608185 original size:148 final size:147
Alignment explanation
Indices: 10607956--10609608 Score: 2401
Period size: 148 Copynumber: 11.2 Consensus size: 147
10607946 TTTTGGGAAA
* **
10607956 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTAT-AGGAAACGCCGCTATTGCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
* * *
10608020 AGCGGCGCTTCTTATAAAGCGCCGCAAAATTTTTTCATTTTTAACAAAACGACGCCGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
*
10608085 TTCTAAAATTTTTCTAT
131 TTCTAAAATTTTTTTAT
*
10608102 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTTGTAAAAAAAAGCCGCTATTGCTTACCTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCG-TTTTTGTAAAAAAACGCCGCTATTGCTTACCTT
*
10608167 TAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGTCGTTTTGCT
65 TAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCT
*
10608232 ATTCTAAAATATTTTTAT
130 ATTCTAAAATTTTTTTAT
10608250 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAATACAAAAACGCCGCTATTGCTTAC
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGT--A-A-AAAAACGCCGCTATTGCTTAC
10608315 CTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTT
62 CTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTT
10608380 GCTATTCTAAAATTTTTTTATT
127 GCTATTCTAAAATTTTTTTA-T
*
10608402 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTATAGAAAGCGCCGCTATAAAAACGCCGCT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCG-TTTT-T----------G-TAAAAAAACGCCGCT
10608467 ATTGCTTACCTTTAGCGGCGC-T-TTATAAGAAGCGCCGCAAAATTTTTTAATTTTGAACAAAAC
53 ATTGCTTACCTTTAGCGGCGCTTATTAT-A-AAGCGCCGCAAAATTTTTTAATTTTGAACAAAAC
10608530 GACGCCGTTTTGCTATTCTAAAATTTTTTTAT
116 GACGCCGTTTTGCTATTCTAAAATTTTTTTAT
* * *
10608562 TTTTTTATAAGTTGATTTATTTTTTGCGGCG-TTTT-TACAAAAACGCCGATATTTCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
*
10608625 AGCGGCGCTTATTATAAAGCGCCGCAAAAGTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
10608690 TTCTAAAATTTTTTTAT
131 TTCTAAAATTTTTTTAT
*
10608707 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTT-T------ACGCCGCTATTTCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
**
10608765 AGTTGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
*
10608830 TTCTAAATTTTTTTTAT
131 TTCTAAAATTTTTTTAT
10608847 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGT-AAAAAACGCCGCTATTGCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
* * *
10608911 AGCGGCACTTATTATAAAGCGCCACAAAATTTTTTAATTTTGAACAAAACGACGCTGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
10608976 TTCTAAAATTTTTTTTAT
131 TTCTAAAA-TTTTTTTAT
* * *
10608994 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTAT-AGAAAGCGCCGCTATTGCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
* * * *
10609058 AGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
*
10609123 TTCTAAAAATTTTTTATT
131 TTCTAAAATTTTTTTA-T
* * **
10609141 TTTTTTGTAAGTTGATTTATTTTTTGCTGCGTTTTT-TATAGGAAACGCCGCTATTGCTTACCTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTA-AAAAAACGCCGCTATTGCTTACCTT
* * * * *
10609205 TAGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATTTTGAACAAAACGACTCCGTTTTGCT
65 TAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCT
10609270 ATTCTAAAATTTTTTTA-
130 ATTCTAAAATTTTTTTAT
* **
10609287 TTTTTTATAAGTTGATTTATTTTTTGCTGCGTTTTT-TATAGGAAACGCCGCTATTGCTTACCTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTA-AAAAAACGCCGCTATTGCTTACCTT
* *
10609351 TAGCGGCGCTTATTATAAAGCGCTGCAAAA-TTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
65 TAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCT
10609415 ATTCTAAAAATTTTATTGT-T
130 ATTCT-AAAATTTT-TT-TAT
* *
10609435 TTTTTTATAAGTTGATTCATTTTTT---GC-----T-TACAAAAACGCCGCTATTGCTTACCTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
10609491 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
66 AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
*
10609556 TTCTAAAA-ATTTTTATT
131 TTCTAAAATTTTTTTA-T
* *
10609573 TTTTTTATAATTTGATTTATTTTTTGCGCCGTTTTT
1 TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTT
10609609 ATAGGTTCAT
Statistics
Matches: 1396, Mismatches: 61, Indels: 100
0.90 0.04 0.06
Matches are distributed among these distances:
136 1 0.00
137 2 0.00
138 26 0.02
139 55 0.04
140 175 0.13
141 2 0.00
145 169 0.12
146 233 0.17
147 190 0.14
148 258 0.18
149 1 0.00
150 1 0.00
151 103 0.07
152 32 0.02
153 4 0.00
154 1 0.00
157 1 0.00
158 3 0.00
159 4 0.00
160 34 0.02
161 98 0.07
163 1 0.00
164 1 0.00
165 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.44
Consensus pattern (147 bp):
TTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAAAAAAACGCCGCTATTGCTTACCTTT
AGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTA
TTCTAAAATTTTTTTAT
Found at i:10608964 original size:146 final size:146
Alignment explanation
Indices: 10608455--10609608 Score: 1724
Period size: 146 Copynumber: 8.0 Consensus size: 146
10608445 GCGCCGCTAT
10608455 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGC-T-TTATAAGAAGCGCCGCAAAATTTTTTAAT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTAT-A-AAGCGCCGCAAAATTTTTTAAT
10608518 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATT
64 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATT
10608583 TTTTGCGGCG-TTTTTAC
129 TTTTGCGGCGTTTTTTAC
* * *
10608600 AAAAACGCCGATATTTCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAAGTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
10608665 TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATTTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATTTT
10608730 TTGCGGCGTTTTTT--
131 TTGCGGCGTTTTTTAC
* **
10608744 ----ACGCCGCTATTTCTTACCTTTAGTTGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
*
10608805 TGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTATAAGTTGATTTATTTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATTTT
10608870 TTGCGGCGTTTTTGTA-
131 TTGCGGCGTTTTT-TAC
* *
10608886 AAAAACGCCGCTATTGCTTACCTTTAGCGGCACTTATTATAAAGCGCCACAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
*
10608951 TGAACAAAACGACGCTGTTTTGCTATTCTAAAATTTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAA-TTTTTTTATTTTTTTATAAGTTGATTTATTT
10609016 TTTGCGGCGTTTTTATA-
130 TTTGCGGCGTTTTT-TAC
* * * * * *
10609033 GAAAGCGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10609098 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTTTTTGTAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTA-TTTTTTTATAAGTTGATTTATTT
* *
10609163 TTTGCTGCGTTTTTTAT
130 TTTGCGGCGTTTTTTAC
* * * * *
10609180 AGGAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATT
1 A-AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATT
*
10609245 TTGAACAAAACGACTCCGTTTTGCTATTCTAAAATTTTTTTA-TTTTTTATAAGTTGATTTATTT
65 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATTT
* *
10609309 TTTGCTGCGTTTTTTAT
130 TTTGCGGCGTTTTTTAC
* * *
10609326 AGGAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCTGCAAAA-TTTTTCATT
1 A-AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATT
*
10609390 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTATTGT-TTTTTTTATAAGTTGATTCA
65 TTGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTT-TT-TATTTTTTTATAAGTTGATTTA
10609454 TTTTTT---GC-----TTAC
127 TTTTTTGCGGCGTTTTTTAC
10609466 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10609531 TGAACAAAACGACGCCGTTTTGCTATTCTAAAA-ATTTTTATTTTTTTTATAATTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTA-TTTTTTTATAAGTTGATTTATTT
*
10609595 TTTGCGCCGTTTTT
130 TTTGCGGCGTTTTT
10609609 ATAGGTTCAT
Statistics
Matches: 935, Mismatches: 46, Indels: 55
0.90 0.04 0.05
Matches are distributed among these distances:
136 1 0.00
137 2 0.00
138 26 0.03
139 55 0.06
140 176 0.19
141 2 0.00
145 167 0.18
146 203 0.22
147 177 0.19
148 126 0.13
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.44
Consensus pattern (146 bp):
AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
TGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATTTT
TTGCGGCGTTTTTTAC
Found at i:10609507 original size:139 final size:138
Alignment explanation
Indices: 10608455--10610193 Score: 1367
Period size: 146 Copynumber: 12.0 Consensus size: 138
10608445 GCGCCGCTAT
10608455 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGC-T-TTATAAGAAGCGCCGCAAAATTTTTTAAT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTAT-A-AAGCGCCGCAAAATTTTTTAAT
* *
10608518 TTTGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTATTTTTTTATAAGTTGATTTAT
64 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCAT
10608582 TTTTTGCGGCGTTTTTAC
128 TTTTT---GC----TTAC
* * *
10608600 AAAAACGCCGATATTTCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAAGTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10608665 TGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCATTT
10608729 TTTGCGGCGTT--
130 TTT---GC-TTAC
**** * **
10608740 TTTTACGCCGCTATTTCTTACCTTTAGTTGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* * *
10608805 TGAACAAAACGACGCCGTTTTGCTATTCT-AAATTTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCATTT
10608869 TTTGCGGCGTTTTTGTA-
130 TTT---GC-----T-TAC
* *
10608886 AAAAACGCCGCTATTGCTTACCTTTAGCGGCACTTATTATAAAGCGCCACAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* * * *
10608951 TGAACAAAACGACGCTGTTTTGCTATTCTAAAATTTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCATTT
*
10609016 TTTGCGGCGTTTTTAT
130 TTT---GC----TTAC
* * * * *
10609032 AGAAAGCGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATT
1 A-AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATT
* *
10609097 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTTTTTGTAAGTTGATTTATT
65 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAA-TTTTTATTTTTTTTATAAGTTGATTCA-T
*
10609162 TTTTGCTGCGTTTTTTAT
128 TTTT--TGC-----TTAC
* * * * *
10609180 AGGAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGTGCTGCAAAATTTTTTCATT
1 A-AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATT
* *
10609245 TTGAACAAAACGACTCCGTTTTGCTATTCT-AAAATTTTT-TTATTTTTTATAAGTTGATTTATT
65 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATT-TTTTTTATAAGTTGATTCA-T
*
10609308 TTTTGCTGCGTTTTTTAT
128 TTTT--TGC-----TTAC
* * *
10609326 AGGAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCTGCAAAA-TTTTTCATT
1 A-AAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATT
*
10609390 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTATTGTTTTTTTTATAAGTTGATTCAT
65 TTGAACAAAACGACGCCGTTTTGCTATTCTAAAAA-TTT-TTATTTTTTTTATAAGTTGATTCAT
10609455 TTTTTGCTTAC
128 TTTTTGCTTAC
10609466 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10609531 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAATTTGATTTATTTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAAGTTGATTCATTTT
*
10609596 TTGCGCCGTT-T
131 TT--G-C-TTAC
** * * *** * *** * * * ** *
10609607 TTATAGGTTCATTTTTTGCTTA-CAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATA
1 AAAAACG--CCGCTATTGCTTACCTTTAGCGGCGC--TT-ATTA--TAAAGCGCCGC-----A-A
****** ** **** ** ** * *
10609671 AAGCGCCGCAAAATTTTTTA-ATTTTGAACAAAACG--ACGCCGTTTTGCTATTCTAAATTTTTT
53 AA---TTTTTTAATTTTGAACAAAACG-AC--GCCGTTTTG-C-TATT-CTA----AAAATTTTT
* * *
10609733 TTATTTTTTTATAAGTTGATTTATTTTTTGCGGCGTTTTTGTAA
105 AT-TTTTTTTATAAGTTGATTCATTTTTT---GC-----T-TAC
*
10609777 AAAAACGCCGCTATTTCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10609842 TGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCATTT
10609906 TTTGCAGCATTTTTTAC
130 TTT---GC-----TTAC
* *
10609923 AAAAACGCCACTATTGCTTACCTTTAGCGGCGC---TT-T-AAGCGCCGCAAAATTTTTTCATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10609983 TGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTATTTTTTTATAAGTTGATTTATTT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTTATAAGTTGATTCATTT
10610047 TTTGCAGCATTTTTTAC
130 TTT---GC-----TTAC
* *
10610064 AAAAACGCCACTATTGCTTACCTTTAGCGGCGC---TT-T-AAGCGCCGCAAAATTTTTTCATTT
1 AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
* *
10610124 TGAACAAAACGACTCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAGTTGAATT-ATT
66 TGAACAAAACGACGCCGTTTTGCTATTCTAAAA-ATTTTTATTTTTTTTATAAGTTG-ATTCATT
10610188 TTTTGC
129 TTTTGC
10610194 GGCGTTTCCT
Statistics
Matches: 1388, Mismatches: 139, Indels: 140
0.83 0.08 0.08
Matches are distributed among these distances:
138 27 0.02
139 56 0.04
140 176 0.13
141 196 0.14
142 37 0.03
143 20 0.01
144 3 0.00
145 175 0.13
146 224 0.16
147 223 0.16
148 130 0.09
149 2 0.00
150 1 0.00
152 3 0.00
153 8 0.01
154 1 0.00
155 12 0.01
156 12 0.01
157 1 0.00
158 8 0.01
159 4 0.00
163 9 0.01
164 34 0.02
165 1 0.00
166 3 0.00
167 2 0.00
168 9 0.01
169 8 0.01
170 3 0.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (138 bp):
AAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTAATTT
TGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAAGTTGATTCATTTT
TTGCTTAC
Found at i:10609624 original size:164 final size:164
Alignment explanation
Indices: 10609450--10609772 Score: 594
Period size: 164 Copynumber: 2.0 Consensus size: 164
10609440 TATAAGTTGA
10609450 TTCATTTTTTGCTTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCG
1 TTCATTTTTTGCTTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCG
10609515 CAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAT-TTTTTTT
66 CAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTATATTTTTTT
*
10609579 ATAATTTGATTTATTTTTTGCGCCGTTTTTATAGG
130 ATAAGTTGATTTATTTTTTGCGCCGTTTTTATAGG
10609614 TTCATTTTTTGCTTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCG
1 TTCATTTTTTGCTTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCG
* *
10609679 CAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTA
66 CAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTATATTTTTTTA
*
10609744 TAAGTTGATTTATTTTTTGCGGCGTTTTT
131 TAAGTTGATTTATTTTTTGCGCCGTTTTT
10609773 GTAAAAAAAC
Statistics
Matches: 154, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
163 9 0.06
164 145 0.94
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (164 bp):
TTCATTTTTTGCTTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCG
CAAAATTTTTTAATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTATATTTTTTTA
TAAGTTGATTTATTTTTTGCGCCGTTTTTATAGG
Found at i:10610040 original size:141 final size:144
Alignment explanation
Indices: 10609626--10610193 Score: 941
Period size: 141 Copynumber: 3.9 Consensus size: 144
10609616 CATTTTTTGC
*
10609626 TTACAAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTTA
1 TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGC-T-TTATAAAGCGCCGCAAAATTTTTTA
*
10609691 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTATAAGTTGATTTA
64 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTA
* *
10609756 TTTTTTGCGGCGTTTT
129 TTTTTTGCAGCATTTT
* * *
10609772 TGTAAAAAAACGCCGCTATTTCTTACCTTTAGCGGCGCTTATTATAAAGCGCCGCAAAATTTTTT
1 T-TACAAAAACGCCACTATTGCTTACCTTTAGCGGCGC-T-TTATAAAGCGCCGCAAAATTTTTT
10609837 AATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTT
63 AATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTT
10609902 ATTTTTTGCAGCATTTT
128 ATTTTTTGCAGCATTTT
*
10609919 TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGC-TT-T-AAGCGCCGCAAAATTTTTTCAT
1 TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGCTTTATAAAGCGCCGCAAAATTTTTTAAT
10609981 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATT
66 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATT
10610046 TTTTGCAGCATTTT
131 TTTTGCAGCATTTT
*
10610060 TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGC-TT-T-AAGCGCCGCAAAATTTTTTCAT
1 TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGCTTTATAAAGCGCCGCAAAATTTTTTAAT
* *
10610122 TTTGAACAAAACGACTCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAGTTGAATTAT
66 TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTA-TTTTTTTATAAGTTGATTTAT
10610187 TTTTTGC
130 TTTTTGC
10610194 GGCGTTTCCT
Statistics
Matches: 409, Mismatches: 11, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
141 204 0.50
142 28 0.07
143 2 0.00
146 34 0.08
147 141 0.34
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (144 bp):
TTACAAAAACGCCACTATTGCTTACCTTTAGCGGCGCTTTATAAAGCGCCGCAAAATTTTTTAAT
TTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATAAGTTGATTTATT
TTTTGCAGCATTTT
Found at i:10612032 original size:7 final size:7
Alignment explanation
Indices: 10611983--10612042 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
10611973 CACTAAAATG
*
10611983 TAAACTC
1 TAAACCC
*
10611990 TAAACCT
1 TAAACCC
10611997 TAAACCC
1 TAAACCC
* *
10612004 CAATCCC
1 TAAACCC
* *
10612011 CAAGCCC
1 TAAACCC
10612018 TAAA-CC
1 TAAACCC
10612024 TAAACCC
1 TAAACCC
10612031 TAAACCC
1 TAAACCC
10612038 TAAAC
1 TAAAC
10612043 TCAAAACTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 6 0.14
7 38 0.86
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:10614005 original size:53 final size:53
Alignment explanation
Indices: 10613931--10614126 Score: 374
Period size: 53 Copynumber: 3.7 Consensus size: 53
10613921 ATGGTTAAAA
10613931 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
1 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
10613984 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
1 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
10614037 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
1 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
**
10614090 TTTTTTAATTTAAACATCTAATTTTGCGGTTAAAATT
1 TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATT
10614127 ATCAATGTAG
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 141 1.00
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.53
Consensus pattern (53 bp):
TTTTTTAATTTAAACATCTAATTTTGTAGTTAAAATTTTGAGATACTAATTTT
Found at i:10614678 original size:7 final size:7
Alignment explanation
Indices: 10614629--10614688 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
10614619 CACTAAAATG
*
10614629 TAAACTC
1 TAAACCC
*
10614636 TAAACCT
1 TAAACCC
10614643 TAAACCC
1 TAAACCC
* *
10614650 CAATCCC
1 TAAACCC
* *
10614657 CAAGCCC
1 TAAACCC
10614664 TAAA-CC
1 TAAACCC
10614670 TAAACCC
1 TAAACCC
10614677 TAAACCC
1 TAAACCC
10614684 TAAAC
1 TAAAC
10614689 TCAAAACTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 6 0.14
7 38 0.86
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:10615841 original size:41 final size:41
Alignment explanation
Indices: 10615784--10615938 Score: 231
Period size: 41 Copynumber: 3.8 Consensus size: 41
10615774 AGATTTTATT
* *
10615784 ATTAGCGCCGCTTTTTCAAAAACGCCGCTAAAGG-CCAGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTAC-GAGC
* *
10615825 ATTAGCGGCGCTTTTTCCAAAACGCCGCTAAAGGTACGAGT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
10615866 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
** *
10615907 GCTAGCGGCGCTTTTTCAAAAAAGCCGCTAAA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
10615939 TGCCCCCAAA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 103 0.99
42 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
Found at i:10616113 original size:40 final size:39
Alignment explanation
Indices: 10615989--10616113 Score: 146
Period size: 40 Copynumber: 3.2 Consensus size: 39
10615979 TTTTTGCGTC
* *
10615989 GCTTTTTAGAAAA-CGCCGCTAATGC-TGATTTTTAGCG
1 GCTTTTTTGAAAAGCGCCGCTAATGCTTGATTTTTAGTG
* ** * *
10616026 GCGTTTTCCAAAATGCGCCGCTAATGCTCGATCTTTAGTG
1 GCTTTTTTGAAAA-GCGCCGCTAATGCTTGATTTTTAGTG
*
10616066 GCATTTTTGTAAAAGCGCCGCTAATGCTTGATTTTTAGTG
1 GCTTTTTTG-AAAAGCGCCGCTAATGCTTGATTTTTAGTG
10616106 GCTTTTTT
1 GCTTTTTT
10616114 TATCCAAACG
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
37 10 0.14
39 12 0.17
40 46 0.64
41 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTTTTTGAAAAGCGCCGCTAATGCTTGATTTTTAGTG
Found at i:10619712 original size:33 final size:33
Alignment explanation
Indices: 10619666--10619734 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
10619656 TGAGCTCGAA
10619666 CTATCATTGGAGCTGAAA-AATACTCAACTCAAG
1 CTATCATTGGAGCT-AAATAATACTCAACTCAAG
* * *
10619699 CTATCATTTGAGCTAAATGATACTCAGCTCAAG
1 CTATCATTGGAGCTAAATAATACTCAACTCAAG
10619732 CTA
1 CTA
10619735 CTTGGGAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 3 0.09
33 29 0.91
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (33 bp):
CTATCATTGGAGCTAAATAATACTCAACTCAAG
Found at i:10633115 original size:16 final size:15
Alignment explanation
Indices: 10633082--10633110 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10633072 TATTTTTTTG
10633082 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
10633097 TTTATTA-GTGTGAA
1 TTTATTATGTGTGAA
10633111 AATTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:10633614 original size:12 final size:12
Alignment explanation
Indices: 10633597--10633643 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
10633587 AAATCAGCAC
* *
10633597 ATATATATATGT
1 ATATATGTATAT
*
10633609 ATATATGTAAAT
1 ATATATGTATAT
10633621 ATATATGTATAT
1 ATATATGTATAT
*
10633633 CTAT-TGTATAT
1 ATATATGTATAT
10633644 TTGATGAGCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 7 0.23
12 23 0.77
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (12 bp):
ATATATGTATAT
Found at i:10634264 original size:41 final size:41
Alignment explanation
Indices: 10634209--10634351 Score: 198
Period size: 41 Copynumber: 3.5 Consensus size: 41
10634199 TTTCGGACTT
* * *
10634209 TAAGTCTAGTAGGCTAAGTGCTGGTGATCTGAAACAGGCTA
1 TAAGCCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTA
* *
10634250 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
1 TAAGCCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTA
*
10634291 TAAACCTAGCAGGCTAAGTG-TCGGTGATCTGAATCAGGCTA
1 TAAGCCTAGCAGGCTAAGTGCT-GGTGATCTGAATCAGGCTA
*
10634332 TAAAGCTTAGCAGGCTAAGT
1 T-AAGCCTAGCAGGCTAAGT
10634352 ACCGGTGAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 74 0.82
42 16 0.18
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (41 bp):
TAAGCCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTA
Found at i:10645082 original size:114 final size:114
Alignment explanation
Indices: 10644887--10645341 Score: 865
Period size: 114 Copynumber: 4.0 Consensus size: 114
10644877 AAATCAGCAC
10644887 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
10644952 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
66 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
10645001 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
10645066 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
66 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
10645115 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
10645180 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
66 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
* *
10645229 ATATATATGTATATCTATTGTATATTTGATGAGTTATAATTAAAAGTATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
* * *
10645294 TAAGCATGAATGTTATATATATGCATAAATGAAGTTCGAATATGTATA
66 TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATA
10645342 NNNNNNNNNN
Statistics
Matches: 336, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 336 1.00
ACGTcount: A:0.42, C:0.03, G:0.14, T:0.42
Consensus pattern (114 bp):
ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATAAATTGAAATTAGT
TAAGTATGAATGTTATATATATGCATAAATAAAGTTTGAATATGTATAT
Found at i:10645478 original size:41 final size:41
Alignment explanation
Indices: 10645421--10645559 Score: 208
Period size: 41 Copynumber: 3.4 Consensus size: 41
10645411 NNNNNNNNAA
*
10645421 CCTAGCAGGCTAAGTGCTGGTGATCTGAAACAGGCTATAAG
1 CCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
* * *
10645462 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
10645503 CCTAGCAGGCTAAGTG-TCGGTGATCTGAATCAGGCTATAAAG
1 CCTAGCAGGCTAAGTGCT-GGTGATCTGAATCAGGCTAT-AAG
*
10645545 CTTAGCAGGCTAAGT
1 CCTAGCAGGCTAAGT
10645560 ACCGGTGAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
41 72 0.82
42 16 0.18
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
Found at i:10647325 original size:43 final size:42
Alignment explanation
Indices: 10647272--10647391 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
10647262 TTCGAGGAAT
* *
10647272 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
1 GATTACGTGTAAGACCATGTCTGGGATA-TGGCATCGATATGA
* * *
10647315 GATTACGTGTAAGACCCTGTCTAGGATAGTGGCATCGATATGT
1 GATTACGTGTAAGACCATGTCTGGGATA-TGGCATCGATATGA
* * *
10647358 GATAACATGTAAGACCATATCTGGGATATGGCAT
1 GATTACGTGTAAGACCATGTCTGGGATATGGCAT
10647392 TGTATGTGAT
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 6 0.09
43 60 0.91
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTGGGATATGGCATCGATATGA
Found at i:10648043 original size:47 final size:47
Alignment explanation
Indices: 10647984--10648138 Score: 163
Period size: 47 Copynumber: 3.3 Consensus size: 47
10647974 AACAAGGTGC
* *
10647984 TGTCCGAATGTTGTTTAGATGCTGTCTATTTTTTAGCATACTAATGT
1 TGTCCGAATGTTGGTTAAATGCTGTCTATTTTTTAGCATACTAATGT
* * *
10648031 TGTCTGAATGTTGGTTAAATGCTGTCTGTTTTTTAGCATATTAATGT
1 TGTCCGAATGTTGGTTAAATGCTGTCTATTTTTTAGCATACTAATGT
* * * * *
10648078 TGTCCAAATTGGTGCTTAAATGCTGT-TCATTTTTGTA-CA-AATCAATGC
1 TGTCCGAA-TGTTGGTTAAATGCTGTCT-ATTTTT-TAGCATACT-AATGT
10648126 TGTCCGAATGTTG
1 TGTCCGAATGTTG
10648139 TTACTGCTGT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
47 55 0.61
48 33 0.37
49 2 0.02
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.45
Consensus pattern (47 bp):
TGTCCGAATGTTGGTTAAATGCTGTCTATTTTTTAGCATACTAATGT
Found at i:10648081 original size:25 final size:25
Alignment explanation
Indices: 10648006--10648081 Score: 59
Period size: 25 Copynumber: 3.2 Consensus size: 25
10647996 GTTTAGATGC
* *
10648006 TGTCTATTTTTTAGCATACTAATGT
1 TGTCTGTTTTTTAGCATATTAATGT
** * * * *
10648031 TGTCTGAATGTT-G-GT-TAAATGC
1 TGTCTGTTTTTTAGCATATTAATGT
10648053 TGTCTGTTTTTTAGCATATTAATGT
1 TGTCTGTTTTTTAGCATATTAATGT
10648078 TGTC
1 TGTC
10648082 CAAATTGGTG
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 13 0.38
23 2 0.06
24 2 0.06
25 17 0.50
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.50
Consensus pattern (25 bp):
TGTCTGTTTTTTAGCATATTAATGT
Found at i:10650039 original size:19 final size:20
Alignment explanation
Indices: 10649993--10650047 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
10649983 TGCCTTTTTT
*
10649993 TGCATTCATTTTTCATTCATCA
1 TGCATT-ATATTTCA-TCATCA
10650015 -GCATTATATTTCATCA-CA
1 TGCATTATATTTCATCATCA
*
10650033 TGCATTAAATTTCAT
1 TGCATTATATTTCAT
10650048 AAAAAGACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 2 0.07
19 16 0.53
20 7 0.23
21 5 0.17
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.45
Consensus pattern (20 bp):
TGCATTATATTTCATCATCA
Found at i:10660665 original size:24 final size:22
Alignment explanation
Indices: 10660622--10660665 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
10660612 ATATACGTAC
* *
10660622 ATATATATATATAAGTTAATAA
1 ATATATAGATATAAGATAATAA
10660644 ATATATAGATCATAAAGATAAT
1 ATATATAGAT-AT-AAGATAAT
10660666 GATTTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 2 0.11
24 7 0.39
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (22 bp):
ATATATAGATATAAGATAATAA
Found at i:10660702 original size:20 final size:20
Alignment explanation
Indices: 10660674--10660720 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
10660664 ATGATTTTAT
*
10660674 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
10660694 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
10660714 ATATATA
1 ATATATA
10660721 GACGTATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:10660714 original size:18 final size:19
Alignment explanation
Indices: 10660674--10660736 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 19
10660664 ATGATTTTAT
*
10660674 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTAT-AA
*
10660694 ATATGTATAGAAAGTAT-A
1 ATATATATAGAAAGTATAA
* *
10660712 ATATATATAG-ACGTATAT
1 ATATATATAGAAAGTATAA
10660730 ATATATA
1 ATATATA
10660737 AGGTAATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 5 0.14
18 17 0.46
20 15 0.41
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.37
Consensus pattern (19 bp):
ATATATATAGAAAGTATAA
Found at i:10660748 original size:52 final size:52
Alignment explanation
Indices: 10660586--10660749 Score: 124
Period size: 54 Copynumber: 3.1 Consensus size: 52
10660576 AGAAATTATA
* *
10660586 AAATATGGATAGAAAGTATAATACATATATACGTACATATATATATATAAGTTAAT
1 AAATATGTATAGAAAGTATAAT--ATATATA-G-ACATATATATATATAAGATAAT
* * ** * *
10660642 AAATA--TATAGATCA-TA-AAGATA-AT-GATTTTATATATATATAGAAATTAT
1 AAATATGTATAGA-AAGTATAATATATATAGA-CATATATATATATA-AGATAAT
* *
10660691 AAAATATGTATAGAAAGTATAATATATATAGACGTATATATATATAAGGTAAT
1 -AAATATGTATAGAAAGTATAATATATATAGACATATATATATATAAGATAAT
10660744 AAATAT
1 AAATAT
10660750 ATAAATCATA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
47 1 0.01
48 13 0.16
49 4 0.05
50 7 0.08
51 4 0.05
52 14 0.17
53 11 0.13
54 21 0.25
55 3 0.04
56 5 0.06
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.35
Consensus pattern (52 bp):
AAATATGTATAGAAAGTATAATATATATAGACATATATATATATAAGATAAT
Found at i:10660758 original size:102 final size:105
Alignment explanation
Indices: 10660566--10660767 Score: 320
Period size: 102 Copynumber: 1.9 Consensus size: 105
10660556 ATAAAGAAAA
10660566 ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACGTACATATATATA
1 ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATA-ATATATACGTACATATATATA
* * *
10660631 TATAAGTTAATAAATATATAGATCATAAAGATAATGATTTT
65 TATAAGGTAATAAATATATAAATCATAAAAATAATGATTTT
* * *
10660672 ATATATATATAGAAATTATAAAATATGTATAGAAAGTATAAT-ATATATA-G-ACGTATATATAT
1 ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATAATATATACGTACATATATATAT
10660734 ATAAGGTAATAAATATATAAATCATAAAAATAAT
66 ATAAGGTAATAAATATATAAATCATAAAAATAAT
10660768 AATTACATAT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
102 42 0.47
103 1 0.01
104 7 0.08
106 40 0.44
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.35
Consensus pattern (105 bp):
ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATAATATATACGTACATATATATAT
ATAAGGTAATAAATATATAAATCATAAAAATAATGATTTT
Found at i:10661318 original size:15 final size:16
Alignment explanation
Indices: 10661288--10661321 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
10661278 TCCCTTTTTT
*
10661288 AAAATCGTAAATAAAA
1 AAAATCGTAAAGAAAA
10661304 AAAATCG-AAAGAAAA
1 AAAATCGTAAAGAAAA
10661319 AAA
1 AAA
10661322 TAGTAAGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.12
Consensus pattern (16 bp):
AAAATCGTAAAGAAAA
Found at i:10661523 original size:23 final size:22
Alignment explanation
Indices: 10661497--10661541 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
10661487 AAATTAAATC
10661497 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
10661520 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
10661542 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:10661557 original size:21 final size:21
Alignment explanation
Indices: 10661497--10661574 Score: 90
Period size: 21 Copynumber: 3.7 Consensus size: 21
10661487 AAATTAAATC
*
10661497 TCTAAGATTACA-AAATCATA
1 TCTAAGATTACATATATCATA
10661517 TCTTCTAAGATTAC--ATATCATA
1 ---TCTAAGATTACATATATCATA
*
10661539 TCTAAGATTGCATATATCATA
1 TCTAAGATTACATATATCATA
10661560 TCTAAGATTACATAT
1 TCTAAGATTACATAT
10661575 CCTCGAAGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.20
21 22 0.44
22 7 0.14
23 11 0.22
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.37
Consensus pattern (21 bp):
TCTAAGATTACATATATCATA
Found at i:10662005 original size:44 final size:43
Alignment explanation
Indices: 10661955--10662727 Score: 793
Period size: 44 Copynumber: 17.6 Consensus size: 43
10661945 CCAGTTTACT
* *
10661955 ACCAATATAAGAAGACAGGATCTGCTATCTTCGATCTACTTCAC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * * *
10661999 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTTGCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CC
* * * * * *
10662044 ACCAGTATATGAAGACAATATCTACTTTCTTCGATCTATTTCGC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * * *
10662088 TACCAATATGGGAAGATAATATCTGC-ATCTTCGATCCACTTCC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
* *
10662131 TACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCAC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * * *
10662176 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CC
* *
10662221 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
*
10662263 TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * * * * * *
10662308 GCCAATACATGAAGACAATATCTGCTTTTTTCGATCTACTTTGTC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CC
* *
10662353 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
10662395 TACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * * *
10662440 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CC
* *
10662485 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
* *
10662527 TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTT-T
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
* * *
10662570 ACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
1 AC-C-AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CC
* * *
10662617 ATCAATATGGGAAGACAAGATCTGC-ATCTTCAATCTACTTCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
* * * *
10662659 TATCAATATAGGAAGACAGGATATGCTATCTTCGATCTATTTCAC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-C
* * *
10662704 GCCAATACATGAAGACAAGATCTG
1 ACCAATATAGGAAGACAAGATCTG
10662728 TTTTTTCACT
Statistics
Matches: 608, Mismatches: 93, Indels: 56
0.80 0.12 0.07
Matches are distributed among these distances:
42 9 0.01
43 120 0.20
44 328 0.54
45 146 0.24
46 4 0.01
47 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCC
Found at i:10662244 original size:132 final size:132
Alignment explanation
Indices: 10661955--10662727 Score: 1208
Period size: 132 Copynumber: 5.8 Consensus size: 132
10661945 CCAGTTTACT
** * * * * * *
10661955 ACCAATATAAGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGA
1 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGA
* * * * * * *
10662019 TCTGCTTTCTTCGATCTACTTTGC-CACCAGTATATGAAGACAATATCTACTTTCTTCGATCTAT
64 TCTGCTATCTTCGATCTAC-TT-CACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
*
10662083 TTCGCT
127 TTCGCC
* * *
10662089 ACCAATATGGGAAGATAATATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
10662154 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
10662219 CC
131 CC
10662221 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
* * *
10662286 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAATATCTGCTTTTTTCGATCTACTTTG
66 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
*
10662351 TC
131 CC
*
10662353 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
10662418 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
10662483 CC
131 CC
10662485 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
* *
10662550 TGCTATCTTCGATCTACTTTACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
10662615 CC
131 CC
* * * * *
10662617 ATCAATATGGGAAGACAAGATCTGCATCTTCAATCTACTTCCTATCAATATAGGAAGACAGGATA
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
*
10662682 TGCTATCTTCGATCTATTTCACGCCAATACATGAAGACAAGATCTG
66 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
10662728 TTTTTTCACT
Statistics
Matches: 595, Mismatches: 42, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 526 0.88
133 48 0.08
134 20 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (132 bp):
ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
CC
Found at i:10663973 original size:6 final size:6
Alignment explanation
Indices: 10663952--10663985 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
10663942 TTGGCCTCTC
10663952 CTTTTT C-TTTT C-TTTT CTTTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
10663986 TTTATCACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.37
6 17 0.63
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:10663973 original size:16 final size:17
Alignment explanation
Indices: 10663952--10663988 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
10663942 TTGGCCTCTC
10663952 CTTTTTC-TTTTCTTTT
1 CTTTTTCTTTTTCTTTT
10663968 CTTTTTCTTTTTCTTTT
1 CTTTTTCTTTTTCTTTT
10663985 -TTTT
1 CTTTT
10663989 ATCACTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
CTTTTTCTTTTTCTTTT
Found at i:10668198 original size:17 final size:17
Alignment explanation
Indices: 10668178--10668211 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10668168 TGAAAAAAAT
10668178 AAAATAAAATTTATATAA
1 AAAAT-AAATTTATATAA
*
10668196 AAAATATATTTATATA
1 AAAATAAATTTATATA
10668212 TATAATACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATAAATTTATATAA
Found at i:10668297 original size:50 final size:48
Alignment explanation
Indices: 10668243--10668406 Score: 134
Period size: 58 Copynumber: 3.2 Consensus size: 48
10668233 AAGAAAAATA
10668243 TACATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACG
1 TACATATAGAAATTATAAAATATGGATAGAAAGTATAATA-ATATATA-G
* * * *
10668293 TACATATATATATATAAGTTAATAAATATATAGATCATAAAG-ATAATGATTATATA-
1 TAC----ATATAGA-AA-TT-ATAAA-ATATGGAT-AGAAAGTATAAT-AATATATAG
* *
10668349 TATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATATAGG
1 TACATATAGAAATTATAAAATATGGATAGAAAGTATAATA-ATATATA-G
10668399 TACATATA
1 TACATATA
10668407 TATAAGGTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 28
0.70 0.09 0.22
Matches are distributed among these distances:
47 6 0.07
48 17 0.19
49 5 0.06
50 12 0.13
51 2 0.02
52 6 0.07
54 6 0.07
55 2 0.02
56 4 0.04
57 5 0.06
58 18 0.20
59 6 0.07
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.35
Consensus pattern (48 bp):
TACATATAGAAATTATAAAATATGGATAGAAAGTATAATAATATATAG
Found at i:10668339 original size:24 final size:22
Alignment explanation
Indices: 10668296--10668354 Score: 55
Period size: 24 Copynumber: 2.6 Consensus size: 22
10668286 ATATACGTAC
* *
10668296 ATATATATATATAAGTTAATAA
1 ATATATAGATATAAGATAATAA
*
10668318 ATATATAGATCATAAAGATAATGA
1 ATATATAGAT-AT-AAGATAATAA
* *
10668342 TTATATATATATA
1 ATATATAGATATA
10668355 TAGAAATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 10 0.33
23 4 0.13
24 16 0.53
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.39
Consensus pattern (22 bp):
ATATATAGATATAAGATAATAA
Found at i:10668355 original size:48 final size:48
Alignment explanation
Indices: 10668296--10668454 Score: 137
Period size: 48 Copynumber: 3.2 Consensus size: 48
10668286 ATATACGTAC
*
10668296 ATATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATT
1 ATATATATATATAAGTTAATAAATATATAGATCATAAAGATAATAATT
* *
10668344 ATATATATATATAGAAATT-ATAAA-ATAT-GTAT-AGAAAGTATAATATATAT
1 ATATATATATAT--AAGTTAATAAATATATAG-ATCATAAAG-ATAATA-AT-T
* * *
10668394 ATAGGTACATATATATAAGGTAATAAATATATAAATCATAAAAATAATAATT
1 ATA--T--ATATATATAAGTTAATAAATATATAGATCATAAAGATAATAATT
*
10668446 ACATATATA
1 ATATATATA
10668455 AACTAAAAAA
Statistics
Matches: 88, Mismatches: 9, Indels: 28
0.70 0.07 0.22
Matches are distributed among these distances:
47 6 0.07
48 28 0.32
49 7 0.08
50 9 0.10
52 7 0.08
53 7 0.08
54 20 0.23
55 4 0.05
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (48 bp):
ATATATATATATAAGTTAATAAATATATAGATCATAAAGATAATAATT
Found at i:10668376 original size:20 final size:20
Alignment explanation
Indices: 10668348--10668397 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
10668338 ATGATTATAT
*
10668348 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
10668368 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
10668388 ATATATATAG
1 ATATATATAG
10668398 GTACATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:10668405 original size:16 final size:15
Alignment explanation
Indices: 10668384--10668426 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
10668374 ATAGAAAGTA
10668384 TAATATATATATAGG
1 TAATATATATATAGG
10668399 TACATATATATA-AGG
1 TA-ATATATATATAGG
*
10668414 TAATAAATATATA
1 TAATATATATATA
10668427 AATCATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 8 0.32
15 8 0.32
16 9 0.36
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.37
Consensus pattern (15 bp):
TAATATATATATAGG
Found at i:10668422 original size:52 final size:51
Alignment explanation
Indices: 10668260--10668423 Score: 115
Period size: 50 Copynumber: 3.1 Consensus size: 51
10668250 AGAAATTATA
* * *
10668260 AAATATGGATAGAAAGTATAATACATATATACGTACATATATATATATAAGTTAAT
1 AAATATGTATAGAAAGTATAATATATATATA-GTAC----ATATATATAAGATAAT
* * * *
10668316 AAATATATAGATCATAAAG-ATAATGAT-TATATA-T--ATATATAGAA-ATTAT
1 AAATATGT--AT-AGAAAGTATAAT-ATATATATAGTACATATATATAAGATAAT
*
10668365 AAAATATGTATAGAAAGTATAATATATATATAGGTACATATATATAAGGTAAT
1 -AAATATGTATAGAAAGTATAATATATATATA-GTACATATATATAAGATAAT
10668418 AAATAT
1 AAATAT
10668424 ATAAATCATA
Statistics
Matches: 84, Mismatches: 12, Indels: 28
0.68 0.10 0.23
Matches are distributed among these distances:
47 7 0.08
48 13 0.15
49 3 0.04
50 17 0.20
52 15 0.18
53 3 0.04
56 7 0.08
58 13 0.15
59 6 0.07
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.35
Consensus pattern (51 bp):
AAATATGTATAGAAAGTATAATATATATATAGTACATATATATAAGATAAT
Found at i:10668432 original size:102 final size:103
Alignment explanation
Indices: 10668240--10668454 Score: 315
Period size: 106 Copynumber: 2.1 Consensus size: 103
10668230 ATAAAGAAAA
*
10668240 ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACGTACATATATATA
1 ATATATATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACGTAC--A-ATATA
* * * * *
10668305 TATAAGTTAATAAATATATAGATCATAAAGATAATGATTAT
63 TATAAGGTAATAAATATATAAATCATAAAAATAATAATTAC
* * *
10668346 ATATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATATAGGTAC-ATATATAT
1 ATATATATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACGTACAATATATAT
10668410 AAGGTAATAAATATATAAATCATAAAAATAATAATTAC
66 AAGGTAATAAATATATAAATCATAAAAATAATAATTAC
10668448 ATATATA
1 ATATATA
10668455 AACTAAAAAA
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 48 0.48
106 52 0.52
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.34
Consensus pattern (103 bp):
ATATATATATAGAAATTATAAAATATGGATAGAAAGTATAATACATATATACGTACAATATATAT
AAGGTAATAAATATATAAATCATAAAAATAATAATTAC
Found at i:10669035 original size:22 final size:21
Alignment explanation
Indices: 10669000--10669106 Score: 73
Period size: 19 Copynumber: 5.2 Consensus size: 21
10668990 AAAGGGTATC
* *
10669000 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
10669021 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
10669044 TACATATCATA--TCTAAAAT
1 TACAAATCATATCTCTAAGAT
*
10669063 TGCATATATCATA--TCTAAGAT
1 TACA-A-ATCATATCTCTAAGAT
* *
10669084 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
10669103 TACA
1 TACA
10669107 TATCCTCGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
19 27 0.37
21 20 0.27
22 15 0.21
23 11 0.15
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:10669043 original size:23 final size:22
Alignment explanation
Indices: 10669000--10669057 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
10668990 AAAGGGTATC
* *
10669000 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
10669021 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
10669044 TACATATCATATCT
1 TACAAATCATATCT
10669058 AAAATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:10669068 original size:19 final size:19
Alignment explanation
Indices: 10669013--10669110 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
10669003 AAATTAAATC
*
10669013 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
10669033 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
* *
10669055 TCTAAAATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
10669076 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
10669095 TCTAAGATTACATATC
1 TCTAAGATTACATATC
10669111 CTCGAAGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
19 31 0.47
21 17 0.26
22 7 0.11
23 11 0.17
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:10669073 original size:21 final size:21
Alignment explanation
Indices: 10669047--10669109 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
10669037 CTAAGATTAC
*
10669047 ATATCATATCTAAAATTGCAT
1 ATATCATATCTAAGATTGCAT
10669068 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
*
10669087 ATATCATATCTAAGATTACAT
1 ATATCATATCTAAGATTGCAT
10669108 AT
1 AT
10669110 CCTCGAAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.47
21 20 0.53
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:10673125 original size:14 final size:14
Alignment explanation
Indices: 10673106--10673133 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10673096 GAAATGTATT
10673106 TATATATATATAGA
1 TATATATATATAGA
10673120 TATATATATATAGA
1 TATATATATATAGA
10673134 GAGAGAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
TATATATATATAGA
Found at i:10678651 original size:21 final size:21
Alignment explanation
Indices: 10678627--10678668 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10678617 TTTGCTTTAT
*
10678627 TTCTCCAAATATTAATTAATC
1 TTCTACAAATATTAATTAATC
10678648 TTCTACAAATATTAATTAATC
1 TTCTACAAATATTAATTAATC
10678669 CTTGGGAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TTCTACAAATATTAATTAATC
Found at i:10681164 original size:16 final size:16
Alignment explanation
Indices: 10681143--10681199 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
10681133 CAAAATAAAT
10681143 TATGAAGAGTTAGAAA
1 TATGAAGAGTTAGAAA
*
10681159 TATGAAGAAACTT-G-AA
1 TATGAAG--AGTTAGAAA
*
10681175 GATGAAGAGTTAGAAA
1 TATGAAGAGTTAGAAA
10681191 TATGAAGAG
1 TATGAAGAG
10681200 ACTTGAAGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 3 0.09
15 1 0.03
16 25 0.76
17 1 0.03
18 3 0.09
ACGTcount: A:0.49, C:0.02, G:0.26, T:0.23
Consensus pattern (16 bp):
TATGAAGAGTTAGAAA
Found at i:10681185 original size:32 final size:32
Alignment explanation
Indices: 10681144--10681218 Score: 141
Period size: 32 Copynumber: 2.3 Consensus size: 32
10681134 AAAATAAATT
10681144 ATGAAGAGTTAGAAATATGAAGAAACTTGAAG
1 ATGAAGAGTTAGAAATATGAAGAAACTTGAAG
*
10681176 ATGAAGAGTTAGAAATATGAAGAGACTTGAAG
1 ATGAAGAGTTAGAAATATGAAGAAACTTGAAG
10681208 ATGAAGAGTTA
1 ATGAAGAGTTA
10681219 CACACATGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.48, C:0.03, G:0.27, T:0.23
Consensus pattern (32 bp):
ATGAAGAGTTAGAAATATGAAGAAACTTGAAG
Found at i:10681211 original size:16 final size:16
Alignment explanation
Indices: 10681160--10681215 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
10681150 AGTTAGAAAT
*
10681160 ATGAAGAAACTTGAAG
1 ATGAAGAGACTTGAAG
*
10681176 ATGAAGAG--TTAGAAAT
1 ATGAAGAGACTT-G-AAG
10681192 ATGAAGAGACTTGAAG
1 ATGAAGAGACTTGAAG
10681208 ATGAAGAG
1 ATGAAGAG
10681216 TTACACACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 2 0.06
15 1 0.03
16 27 0.82
17 1 0.03
18 2 0.06
ACGTcount: A:0.48, C:0.04, G:0.29, T:0.20
Consensus pattern (16 bp):
ATGAAGAGACTTGAAG
Found at i:10681291 original size:39 final size:39
Alignment explanation
Indices: 10681237--10681342 Score: 212
Period size: 39 Copynumber: 2.7 Consensus size: 39
10681227 CATGAATAAT
10681237 CATTTAAGTGATGTAGATGAATAGTCACAACTCCTATAG
1 CATTTAAGTGATGTAGATGAATAGTCACAACTCCTATAG
10681276 CATTTAAGTGATGTAGATGAATAGTCACAACTCCTATAG
1 CATTTAAGTGATGTAGATGAATAGTCACAACTCCTATAG
10681315 CATTTAAGTGATGTAGATGAATAGTCAC
1 CATTTAAGTGATGTAGATGAATAGTCAC
10681343 TTACAACTCC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (39 bp):
CATTTAAGTGATGTAGATGAATAGTCACAACTCCTATAG
Found at i:10686677 original size:13 final size:13
Alignment explanation
Indices: 10686656--10686797 Score: 151
Period size: 13 Copynumber: 10.8 Consensus size: 13
10686646 AAATAACTAG
*
10686656 TTTATTATACTGT
1 TTTAATATACTGT
*
10686669 TTTAATATACTTT
1 TTTAATATACTGT
*
10686682 TTTAGTATACTGT
1 TTTAATATACTGT
*
10686695 TATAAATATACTGT
1 T-TTAATATACTGT
*
10686709 TTTAATATAATGT
1 TTTAATATACTGT
*
10686722 TTTAATATATTGT
1 TTTAATATACTGT
*
10686735 TATAAATATACTGT
1 T-TTAATATACTGT
* *
10686749 TTTAATAAATTGT
1 TTTAATATACTGT
*
10686762 TTTAATATAATGT
1 TTTAATATACTGT
*
10686775 TTTAGTATACTGT
1 TTTAATATACTGT
*
10686788 TATAA-ATACT
1 TTTAATATACT
10686798 ACACCTTAAT
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
12 5 0.05
13 80 0.75
14 22 0.21
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.53
Consensus pattern (13 bp):
TTTAATATACTGT
Found at i:10686716 original size:40 final size:40
Alignment explanation
Indices: 10686661--10686788 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 40
10686651 ACTAGTTTAT
* * *
10686661 TATACTGTTTTAATATACTTTTTTAGTATACTGTTATAAA
1 TATACTGTTTTAATATAATTTTTTAATATAATGTTATAAA
* *
10686701 TATACTGTTTTAATATAATGTTTTAATATATTGTTATAAA
1 TATACTGTTTTAATATAATTTTTTAATATAATGTTATAAA
* *
10686741 TATACTGTTTTAATA-AATTGTTTTAATATAATGTT-TTAG
1 TATACTGTTTTAATATAATT-TTTTAATATAATGTTATAAA
10686780 TATACTGTT
1 TATACTGTT
10686789 ATAAATACTA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 14 0.18
40 65 0.82
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.53
Consensus pattern (40 bp):
TATACTGTTTTAATATAATTTTTTAATATAATGTTATAAA
Found at i:10686724 original size:53 final size:54
Alignment explanation
Indices: 10686664--10686797 Score: 82
Period size: 53 Copynumber: 2.5 Consensus size: 54
10686654 AGTTTATTAT
* * * *
10686664 ACTGTTTTAATATACTTTTTTAGTATAC-TGTTATAAATATACTGTTTTAATATA
1 ACTGTTTTAATATAATGTTTTAATATACTTGTTATAAATATACTGTTTAAATA-A
* * * * * *
10686718 A-TGTTTTAATATATTGTTATAAATATAC-TGTT-TTAATAAATTGTTTTAATATA
1 ACTGTTTTAATATAATGTT-TTAATATACTTGTTATAAATATACTGTTTAAATA-A
* * *
10686771 A-TGTTTTAGTATACTGTTATAA-ATACT
1 ACTGTTTTAATATAATGTTTTAATATACT
10686798 ACACCTTAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
51 4 0.06
52 2 0.03
53 49 0.73
54 12 0.18
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.51
Consensus pattern (54 bp):
ACTGTTTTAATATAATGTTTTAATATACTTGTTATAAATATACTGTTTAAATAA
Found at i:10686807 original size:53 final size:52
Alignment explanation
Indices: 10686706--10686845 Score: 156
Period size: 53 Copynumber: 2.7 Consensus size: 52
10686696 ATAAATATAC
* ***
10686706 TGTTTTAATATAATGTTTTAATATATTGTTATAAATATACTGTTTTAATAAAT
1 TGTTTTAATATAATGTTTTAATATACTGTTATAAATATACTACCTTAAT-AAT
* *
10686759 TGTTTTAATATAATGTTTTAGTATACTGTTATAAATACTAC-ACCTTAATTAT
1 TGTTTTAATATAATGTTTTAATATACTGTTATAAATA-TACTACCTTAATAAT
** * * *
10686811 TAATGTAATATACTGGTTTAATATACTGTTATAAA
1 TGTTTTAATATAATGTTTTAATATACTGTTATAAA
10686846 ATTAGTCAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
52 31 0.42
53 40 0.54
54 3 0.04
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (52 bp):
TGTTTTAATATAATGTTTTAATATACTGTTATAAATATACTACCTTAATAAT
Found at i:10687311 original size:17 final size:18
Alignment explanation
Indices: 10687283--10687317 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
10687273 ATTCATATGG
*
10687283 TGTTTATATCATTTTTTA
1 TGTTTATATCATATTTTA
10687301 TGTTT-TATCATATTTTA
1 TGTTTATATCATATTTTA
10687318 ATTATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (18 bp):
TGTTTATATCATATTTTA
Found at i:10688107 original size:21 final size:23
Alignment explanation
Indices: 10688082--10688125 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
10688072 ATGCATTGAA
*
10688082 TTTTATATAC-AAAT-TATATAT
1 TTTTAAATACTAAATATATATAT
*
10688103 TTTTAAATTCTAAATATATATAT
1 TTTTAAATACTAAATATATATAT
10688126 ATATTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTAAATACTAAATATATATAT
Found at i:10696073 original size:26 final size:26
Alignment explanation
Indices: 10695997--10696053 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
10695987 GGAAACAGAT
*
10695997 GGGATATGCATTAGTAATAATAGAAG
1 GGGATATGCATCAGTAATAATAGAAG
10696023 GGGATATGCATCAGTAATAATAGAAG
1 GGGATATGCATCAGTAATAATAGAAG
10696049 GGGAT
1 GGGAT
10696054 TCGACATCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.30, T:0.25
Consensus pattern (26 bp):
GGGATATGCATCAGTAATAATAGAAG
Found at i:10698156 original size:25 final size:27
Alignment explanation
Indices: 10698118--10698174 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
10698108 ACATTTTGTT
* *
10698118 TATTTTTAA-TTTTTAGATATA-TATA
1 TATTTATAACTTTTTAGATAAATTATA
*
10698143 TATTTATAACTTTTTATATAAATTATA
1 TATTTATAACTTTTTAGATAAATTATA
10698170 TATTT
1 TATTT
10698175 TTCTACTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 8 0.30
26 10 0.37
27 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
TATTTATAACTTTTTAGATAAATTATA
Found at i:10700030 original size:2 final size:2
Alignment explanation
Indices: 10700023--10700047 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10700013 AGAGTCATTT
10700023 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10700048 TTCCTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10702898 original size:6 final size:6
Alignment explanation
Indices: 10702889--10703154 Score: 532
Period size: 6 Copynumber: 44.3 Consensus size: 6
10702879 ACACACACAC
10702889 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
10702937 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
10702985 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
10703033 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
10703081 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
10703129 ATGTAT ATGTAT ATGTAT ATGTAT AT
1 ATGTAT ATGTAT ATGTAT ATGTAT AT
10703155 ATATTAATCA
Statistics
Matches: 260, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 260 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:10709040 original size:18 final size:19
Alignment explanation
Indices: 10709001--10709096 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
10708991 ATTTTATATT
10709001 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
10709020 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
10709038 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
10709057 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
10709075 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
10709094 TTA
1 TTA
10709097 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:10709042 original size:37 final size:37
Alignment explanation
Indices: 10709001--10709096 Score: 183
Period size: 37 Copynumber: 2.6 Consensus size: 37
10708991 ATTTTATATT
*
10709001 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
10709038 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
10709075 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
10709097 CTTAATTAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:10709764 original size:26 final size:28
Alignment explanation
Indices: 10709735--10709795 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
10709725 TTTTTTTGAT
10709735 ATATTTTGA-TAAAT-AAAAAAATTATA
1 ATATTTTGAGTAAATAAAAAAAATTATA
10709761 ATATTTT-AGTAAATAAAAAAAATTATA
1 ATATTTTGAGTAAATAAAAAAAATTATA
10709788 ATATTTTG
1 ATATTTTG
10709796 GTTATTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 1 0.03
26 12 0.38
27 19 0.59
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (28 bp):
ATATTTTGAGTAAATAAAAAAAATTATA
Done.