Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 43 of 161
Found at i:13163949 original size:18 final size:18
Alignment explanation
Indices: 13163922--13163967 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
13163912 GGAATAGAAG
13163922 GAGAAAAAAGAAAGAAAT
1 GAGAAAAAAGAAAGAAAT
*
13163940 GAGAAGAAAGAAAGAAA-
1 GAGAAAAAAGAAAGAAAT
13163957 -A-AAAAAAGAAA
1 GAGAAAAAAGAAA
13163968 AAAGAAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 9 0.35
16 1 0.04
18 16 0.62
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (18 bp):
GAGAAAAAAGAAAGAAAT
Found at i:13163955 original size:11 final size:11
Alignment explanation
Indices: 13163923--13163975 Score: 54
Period size: 11 Copynumber: 4.5 Consensus size: 11
13163913 GAATAGAAGG
13163923 AGAAA-AAAGAA
1 AGAAAGAAA-AA
13163934 AGAAATGAGAAGAA
1 AGAAA-GA-AA-AA
13163948 AGAAAGAAAAA
1 AGAAAGAAAAA
*
13163959 AAAAAGAAAAA
1 AGAAAGAAAAA
13163970 AGAAAG
1 AGAAAG
13163976 GGAAGGTATG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
11 22 0.59
12 2 0.05
13 3 0.08
14 10 0.27
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (11 bp):
AGAAAGAAAAA
Found at i:13163971 original size:18 final size:20
Alignment explanation
Indices: 13163923--13163975 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
13163913 GAATAGAAGG
*
13163923 AGAAAAAAGAAAGAAATGAGA
1 AGAAAAAAGAAAGAAA-GAAA
13163944 AGAAAGAAAGAAA-AAA-AAA
1 AGAAA-AAAGAAAGAAAGAAA
13163963 AGAAAAAAGAAAG
1 AGAAAAAAGAAAG
13163976 GGAAGGTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 7 0.24
19 7 0.24
21 8 0.28
22 7 0.24
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (20 bp):
AGAAAAAAGAAAGAAAGAAA
Found at i:13164424 original size:106 final size:104
Alignment explanation
Indices: 13164102--13164552 Score: 460
Period size: 111 Copynumber: 4.3 Consensus size: 104
13164092 TTAATAATTA
* * * * *
13164102 TTATAAATTGTTTGTGTTTAGTTTA--GTG-TTTATTGTGATTTTAAATTTTTTAATTTTTTAAA
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTGATTTTTTATGAATATAAATTTTTT-ATTTTTTTAA
* *
13164164 AATCATTTTAAAGTTATTTTGTTAGTAATATATGATTAGG
65 AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * *
13164204 TTATATATTGTTTGTGTTTAGCTTAGTGTTTATTGTGATTTTTTATGAATGTAAA--TTTTA---
1 TTATAAATTGTTTGTG--T---TTA--GTTTAGTGTGATTTTTTATGAATATAAATTTTTTATTT
*** * *
13164264 -AAAAAAATTATTTTAAAGTTATTTT-TTAATTATTTATGATTAGG
59 TTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * * *
13164308 TGT-TAAATTGTTTGTGTTTAGTTTAGTGTGATTTTTTATTAATGTAATTTTTTTTTTGTTTTTT
1 T-TATAAATTGTTTGTGTTTAGTTTAGTGTGATTTTTTATGAATATAA-ATTTTTTAT-TTTTTT
13164372 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
63 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
13164414 TTATAAATTGTTTGTGTTTAGTTTAGTATTTATTGTGATTTTTTATGAATATAAATTTTTTATTT
1 TTATAAATTGTTTGTGTTTAGTTTAG-------TGTGATTTTTTATGAATATAAATTTTTTATTT
13164479 TTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
59 TTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* *
13164525 TTATAAATT-ATT-TGTTTAGTTTAATGTG
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTG
13164553 TATTGTGATT
Statistics
Matches: 294, Mismatches: 27, Indels: 56
0.78 0.07 0.15
Matches are distributed among these distances:
97 25 0.09
99 3 0.01
100 4 0.01
102 20 0.07
104 30 0.10
105 46 0.16
106 41 0.14
107 3 0.01
109 17 0.06
110 6 0.02
111 60 0.20
112 20 0.07
113 19 0.06
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.57
Consensus pattern (104 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTGATTTTTTATGAATATAAATTTTTTATTTTTTTAAA
ATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
Found at i:13164463 original size:210 final size:210
Alignment explanation
Indices: 13164102--13164563 Score: 602
Period size: 210 Copynumber: 2.2 Consensus size: 210
13164092 TTAATAATTA
13164102 TTATAAATTGTTTGTGTTTAGTTTAGTGT-TTATTGTGATTTTAAATTTTTTAATTTTTTAAAAA
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTGTTATTGTGATTTTAAATTTTTTAATTTTTTAAAAA
*
13164166 TCATTTTAAAGTTATTTTGTTAGTAATATATGATTAGGTTATATATTGTTTGTGTTTAGCTTAGT
66 TCATTTTAAAGTTATTTTGTTAGTAATATATGATTAGGTTATAAATTGTTTGTGTTTAGCTTAGT
* *
13164231 GTTTATTGTGATTTTTTATGAATGTAAA-TTTTA-AAAAAAATTATTTTAAAGTTATTTT-TTAA
131 ATTTATTGTGATTTTTTATGAATATAAATTTTTATAAAAAAATTATTTTAAAGTTATTTTGTTAA
*
13164293 TTATTTATGATTAGG
196 TAATTTATGATTAGG
* * **
13164308 TGT-TAAATTGTTTGTGTTTAGTTTAGTGTGATT-TT-TTATTAATGTAATTTTTTTTTTGTTTT
1 T-TATAAATTGTTTGTGTTTAGTTTAGTGTG-TTATTGTGATT--T-TAAATTTTTTAAT-TTTT
* * *
13164370 TTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAG
60 TAAAAATCATTTTAAAGTTATTTTGTTAGTAATATATGATTAGGTTATAAATTGTTTGTGTTTAG
* ***
13164435 TTTAGTATTTATTGTGATTTTTTATGAATATAAATTTTTTATTTTTTTAAAATTATTTTAAAGTT
125 CTTAGTATTTATTGTGATTTTTTATGAATATAAA-TTTTTA---TAAAAAAATTATTTTAAAGTT
*
13164500 ATTTTGTTAGTAATTTATGATTAGG
186 ATTTTGTTAATAATTTATGATTAGG
* *
13164525 TTATAAATT-ATT-TGTTTAGTTTAATGTG-TATTGTGATTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTGTTATTGTGATTT
13164564 GTTATAATGT
Statistics
Matches: 220, Mismatches: 19, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
206 31 0.14
207 3 0.01
208 3 0.01
209 10 0.05
210 96 0.44
212 5 0.02
213 2 0.01
214 2 0.01
215 19 0.09
216 25 0.11
217 24 0.11
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (210 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTGTTATTGTGATTTTAAATTTTTTAATTTTTTAAAAA
TCATTTTAAAGTTATTTTGTTAGTAATATATGATTAGGTTATAAATTGTTTGTGTTTAGCTTAGT
ATTTATTGTGATTTTTTATGAATATAAATTTTTATAAAAAAATTATTTTAAAGTTATTTTGTTAA
TAATTTATGATTAGG
Found at i:13164501 original size:111 final size:111
Alignment explanation
Indices: 13164267--13164589 Score: 404
Period size: 111 Copynumber: 3.0 Consensus size: 111
13164257 AATTTTAAAA
* *
13164267 AAAATTATTTTAAAGTTATTTT-TTAATTATTTATGATTAGGTGT-TAAATTGTTTGTGTTTAGT
1 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGT-TATAAATTGTTTGTGTTTAGT
* * * *
13164330 TTAG-----TGTGATTTTTTATTAATGTAATTTTTTTTTTGTTTTTT
65 TTAGTTTATTGTGATTTTTTATGAATATAATATTTTTTATGTTTTTT
13164372 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
1 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
13164437 TAGTATTTATTGTGATTTTTTATGAATATAA-ATTTTTTAT-TTTTTT
66 TAG--TTTATTGTGATTTTTTATGAATATAATATTTTTTATGTTTTTT
*
13164483 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT-ATT-TGTTTAGTT
1 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
* * * *
13164546 TAATGTGTATTGTGATTTGTTAT-AATGTAAT-TTTATT-TGTTTTT
66 T-A-GTTTATTGTGATTTTTTATGAATATAATATTTTTTATGTTTTT
13164590 GATTTATTTG
Statistics
Matches: 194, Mismatches: 11, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
105 23 0.12
106 41 0.21
107 1 0.01
108 16 0.08
109 26 0.13
110 3 0.02
111 58 0.30
112 7 0.04
113 19 0.10
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (111 bp):
AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
TAGTTTATTGTGATTTTTTATGAATATAATATTTTTTATGTTTTTT
Found at i:13164835 original size:17 final size:16
Alignment explanation
Indices: 13164813--13164844 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
13164803 TGAGAATTTT
13164813 TTATTGTACTTATATTA
1 TTATTGTAC-TATATTA
13164830 TTATTGTACTATATT
1 TTATTGTACTATATT
13164845 TATCGTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTATTGTACTATATTA
Found at i:13164847 original size:17 final size:16
Alignment explanation
Indices: 13164808--13164847 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
13164798 ATTTATGAGA
*
13164808 ATTTTTTATTGTACTT
1 ATTTATTATTGTACTT
13164824 ATATTATTATTGTACTAT
1 AT-TTATTATTGTACT-T
13164842 ATTTAT
1 ATTTAT
13164848 CGTATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 16 0.76
18 3 0.14
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (16 bp):
ATTTATTATTGTACTT
Found at i:13164874 original size:21 final size:22
Alignment explanation
Indices: 13164823--13164880 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 22
13164813 TTATTGTACT
* *
13164823 TATATTATTATTGTACTATATT
1 TATAATATTATTGTACTATATG
** *
13164845 TATCGTATTATT-TACTGTATG
1 TATAATATTATTGTACTATATG
*
13164866 TATAATATTAATGTA
1 TATAATATTATTGTA
13164881 TCTTGATAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (22 bp):
TATAATATTATTGTACTATATG
Found at i:13167214 original size:48 final size:48
Alignment explanation
Indices: 13167144--13167266 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 48
13167134 AACACAGAAT
*
13167144 AACTTTGTAATTT-AATTGAGATTCATTGCAACATTAAAACT-TGGAACA
1 AACTTTGTAATTTAAATT-AGATTCATTGCAACATTAAAA-TGCGGAACA
* * *
13167192 AAGTTTGTAATTTAAATTAGATTAATTGCAATATTAAAATGCGGAACA
1 AACTTTGTAATTTAAATTAGATTCATTGCAACATTAAAATGCGGAACA
* * *
13167240 AACTTTGCAATATAAATTAGATACATT
1 AACTTTGTAATTTAAATTAGATTCATT
13167267 AGAGTACATT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.02
48 59 0.92
49 4 0.06
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (48 bp):
AACTTTGTAATTTAAATTAGATTCATTGCAACATTAAAATGCGGAACA
Found at i:13169312 original size:18 final size:19
Alignment explanation
Indices: 13169284--13169321 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
13169274 ATAGTTTATA
*
13169284 TATATATACATTTACATTT
1 TATATATACATATACATTT
13169303 TATA-ATACATATACATTT
1 TATATATACATATACATTT
13169321 T
1 T
13169322 TCCATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (19 bp):
TATATATACATATACATTT
Found at i:13169316 original size:24 final size:25
Alignment explanation
Indices: 13169278--13169339 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 25
13169268 TTATATATAG
*
13169278 TTTAT-ATATATATACA-TTTACAT
1 TTTATAATACATATACATTTTACAT
*
13169301 TTTATAATACATATACATTTTTCCAT
1 TTTATAATACATATACA-TTTTACAT
*
13169327 TTTATAATTCATA
1 TTTATAATACATA
13169340 CATATTTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.15
24 10 0.30
26 18 0.55
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTATAATACATATACATTTTACAT
Found at i:13169346 original size:26 final size:26
Alignment explanation
Indices: 13169298--13169347 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13169288 TATACATTTA
*
13169298 CATTTTATAATACATATACATTTTTC
1 CATTTTATAATACATACACATTTTTC
* *
13169324 CATTTTATAATTCATACATATTTT
1 CATTTTATAATACATACACATTTT
13169348 CACATACATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (26 bp):
CATTTTATAATACATACACATTTTTC
Found at i:13173573 original size:23 final size:23
Alignment explanation
Indices: 13173518--13173583 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
13173508 AAAAATATAA
* *
13173518 AAAAATAAAAA-AA-GGAAAAAG
1 AAAAATAAAAAGAACGAAAAAAC
* *
13173539 GAAAA-AAGAAGAACGAAAAAAC
1 AAAAATAAAAAGAACGAAAAAAC
13173561 AAAAATAAAAAGAAAC-AAAAAAC
1 AAAAATAAAAAG-AACGAAAAAAC
13173584 CTCCACTAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 4 0.11
21 6 0.17
22 10 0.29
23 12 0.34
24 3 0.09
ACGTcount: A:0.79, C:0.06, G:0.12, T:0.03
Consensus pattern (23 bp):
AAAAATAAAAAGAACGAAAAAAC
Found at i:13174089 original size:7 final size:7
Alignment explanation
Indices: 13174071--13174120 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
13174061 ATGATGTGAA
13174071 AAAAATG
1 AAAAATG
13174078 AAAAAATG
1 -AAAAATG
13174086 AAAAA-G
1 AAAAATG
13174092 AAAAATG
1 AAAAATG
13174099 AAAAATGG
1 AAAAAT-G
13174107 AAAAA-G
1 AAAAATG
13174113 TAAAAATG
1 -AAAAATG
13174121 GAGAGGCTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 7 0.18
7 17 0.45
8 14 0.37
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:13174095 original size:21 final size:22
Alignment explanation
Indices: 13174071--13174120 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 22
13174061 ATGATGTGAA
13174071 AAAAATGAAAAAAT-GAAAAAG-
1 AAAAATG-AAAAATGGAAAAAGT
13174092 AAAAATGAAAAATGGAAAAAGT
1 AAAAATGAAAAATGGAAAAAGT
13174114 AAAAATG
1 AAAAATG
13174121 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.22
21 14 0.52
22 7 0.26
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (22 bp):
AAAAATGAAAAATGGAAAAAGT
Found at i:13174097 original size:13 final size:13
Alignment explanation
Indices: 13174079--13174103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13174069 AAAAAAATGA
13174079 AAAAATGAAAAAG
1 AAAAATGAAAAAG
13174092 AAAAATGAAAAA
1 AAAAATGAAAAA
13174104 TGGAAAAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAAATGAAAAAG
Found at i:13174122 original size:15 final size:14
Alignment explanation
Indices: 13174071--13174120 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 14
13174061 ATGATGTGAA
13174071 AAAAATGAAAAAATG
1 AAAAATG-AAAAATG
13174086 AAAAA-GAAAAATG
1 AAAAATGAAAAATG
13174099 AAAAATGGAAAAA-G
1 AAAAAT-GAAAAATG
13174113 TAAAAATG
1 -AAAAATG
13174121 GAGAGGCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
13 12 0.38
14 3 0.09
15 17 0.53
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:13175964 original size:18 final size:19
Alignment explanation
Indices: 13175941--13175978 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
13175931 ATAAAATGGA
*
13175941 AAAATGTATATGTAT-TAT
1 AAAATGTAAATGTATATAT
13175959 AAAATGTAAATGTATATAT
1 AAAATGTAAATGTATATAT
13175978 A
1 A
13175979 TATAAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (19 bp):
AAAATGTAAATGTATATAT
Found at i:13175977 original size:26 final size:26
Alignment explanation
Indices: 13175915--13175964 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13175905 TATGTATGTG
*
13175915 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
13175941 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
13175965 TAAATGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:13176126 original size:3 final size:3
Alignment explanation
Indices: 13176118--13176157 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
13176108 ATGTGTAAGT
13176118 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
13176158 TAACAACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:13180328 original size:11 final size:11
Alignment explanation
Indices: 13180312--13180352 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
13180302 AGTTGCTAAC
*
13180312 AAAATAACTTT
1 AAAATAACTTA
*
13180323 AAAATAAATTA
1 AAAATAACTTA
*
13180334 AAAATAACATA
1 AAAATAACTTA
13180345 AAAATAAC
1 AAAATAAC
13180353 AATAAACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAACTTA
Found at i:13180353 original size:11 final size:11
Alignment explanation
Indices: 13180312--13180358 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
13180302 AGTTGCTAAC
* *
13180312 AAAATAACTTT
1 AAAATAACATA
13180323 AAAATAA-ATTA
1 AAAATAACA-TA
13180334 AAAATAACATA
1 AAAATAACATA
13180345 AAAATAACAATA
1 AAAATAAC-ATA
13180357 AA
1 AA
13180359 CAAACTACAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 25 0.81
12 6 0.19
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAACATA
Found at i:13181488 original size:16 final size:16
Alignment explanation
Indices: 13181464--13181515 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
13181454 TGGTTCGCTG
* *
13181464 TAATAGAATAGAGGTA
1 TAATGGAATAGAGGCA
* *
13181480 TAATGGAATAGATGCG
1 TAATGGAATAGAGGCA
*
13181496 TAATGGAATAGAGGCG
1 TAATGGAATAGAGGCA
13181512 TAAT
1 TAAT
13181516 AGGTAATTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.29, T:0.25
Consensus pattern (16 bp):
TAATGGAATAGAGGCA
Found at i:13181579 original size:44 final size:46
Alignment explanation
Indices: 13181497--13181589 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 46
13181487 ATAGATGCGT
* * *
13181497 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGAAATAGAGGCGTAATAGATAATTCTTATGTTTGGTTGAATGG
13181543 AATGAAATAGAGGCGTAAT-GAT-ATTCTTATGTTTGGTTGAATGG
1 AATGAAATAGAGGCGTAATAGATAATTCTTATGTTTGGTTGAATGG
13181587 AAT
1 AAT
13181590 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 24 0.55
45 2 0.05
46 18 0.41
ACGTcount: A:0.31, C:0.04, G:0.28, T:0.37
Consensus pattern (46 bp):
AATGAAATAGAGGCGTAATAGATAATTCTTATGTTTGGTTGAATGG
Found at i:13181585 original size:39 final size:44
Alignment explanation
Indices: 13181497--13181607 Score: 124
Period size: 39 Copynumber: 2.6 Consensus size: 44
13181487 ATAGATGCGT
* *
13181497 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGATAATTCTTATGTTTGGTT--ATGG
*
13181543 AATGAAATAGAGGCGTAAT-GAT-ATTCTTATGTTTGG-T-T-G
1 AATGGAATAGAGGCGTAATAGATAATTCTTATGTTTGGTTATGG
*
13181582 AATGGAATAGAGGTGTAATAGCATAA
1 AATGGAATAGAGGCGTAATAG-ATAA
13181608 GGAAAAAAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 18 0.32
40 2 0.04
41 2 0.04
42 1 0.02
43 1 0.02
44 13 0.23
45 2 0.04
46 18 0.32
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGATAATTCTTATGTTTGGTTATGG
Found at i:13181757 original size:26 final size:26
Alignment explanation
Indices: 13181728--13181841 Score: 86
Period size: 26 Copynumber: 4.3 Consensus size: 26
13181718 TTAATCATAT
*
13181728 TTTAACATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
* * * * *
13181754 TTTAATAAAATATATGAATTTACTAAAA
1 TTTAATATAAT-TAT-TATTAAATATAA
* * * *
13181782 TCATAATATATAATACTA-TAAAAATAA
1 T-TTAATATA-ATTATTATTAAATATAA
*
13181809 TTTAAAATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
13181835 TTTAATA
1 TTTAATA
13181842 AAAATATATA
Statistics
Matches: 62, Mismatches: 21, Indels: 10
0.67 0.23 0.11
Matches are distributed among these distances:
25 5 0.08
26 29 0.47
27 9 0.15
28 10 0.16
29 8 0.13
30 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (26 bp):
TTTAATATAATTATTATTAAATATAA
Found at i:13181775 original size:18 final size:17
Alignment explanation
Indices: 13181748--13181782 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13181738 TTATTATTAA
13181748 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
13181765 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
13181783 CATAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13187424 original size:203 final size:200
Alignment explanation
Indices: 13187109--13187509 Score: 757
Period size: 203 Copynumber: 2.0 Consensus size: 200
13187099 TATGAGTCTA
13187109 TCAAATGTTTCATTTTCTCACTTTTGTCTCAAAAAATTCATAACCATGTACAGGTACAAATCTAT
1 TCAAATGTTTCATTTTCTCACTTTTGTCTCAAAAAATTCATAACCATGTACAGGTACAAATCTAT
13187174 ACAGTCTCAGTATGAATTGATACCATCCTACTATACAGAAAAAGAATAAATTAACATAATCCTAC
66 ACAGTCTCAGTATGAATTGATACCATCCTACTATACAGAAAAAGAATAAATTAACATAATCCTAC
*
13187239 TATGGAACTAACCTCAAGTTCCAATGCTCTTCTTGTCTATTCTAGTATGTGAGTATGCTGACCAA
131 TATGGAACTAACCTCAAGTTCCAATGCTCTTCTTGTCTATTCCAGTATGTGAGTATGCTGACCAA
13187304 TCATC
196 TCATC
13187309 TCAAATGTTTCATTTTCTCACTTTTGTCTCAAAAAATTCATAACCATGTACAGGAGGTACAAATC
1 TCAAATGTTTCATTTTCTCACTTTTGTCTCAAAAAATTCATAACCATGTAC---AGGTACAAATC
*
13187374 TATACAGTCTCAGTATGAATTGATACCATGCTACTATACAGAAAAAGAATAAATTAACATAATCC
63 TATACAGTCTCAGTATGAATTGATACCATCCTACTATACAGAAAAAGAATAAATTAACATAATCC
13187439 TACTATGGAACTAACCTCAAGTTCCAATGCTCTTCTTGTCTATTCCAGTATGTGAGTATGCTGAC
128 TACTATGGAACTAACCTCAAGTTCCAATGCTCTTCTTGTCTATTCCAGTATGTGAGTATGCTGAC
13187504 CAATCA
193 CAATCA
13187510 CCCAATCAAT
Statistics
Matches: 196, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
200 51 0.26
203 145 0.74
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (200 bp):
TCAAATGTTTCATTTTCTCACTTTTGTCTCAAAAAATTCATAACCATGTACAGGTACAAATCTAT
ACAGTCTCAGTATGAATTGATACCATCCTACTATACAGAAAAAGAATAAATTAACATAATCCTAC
TATGGAACTAACCTCAAGTTCCAATGCTCTTCTTGTCTATTCCAGTATGTGAGTATGCTGACCAA
TCATC
Found at i:13192543 original size:43 final size:43
Alignment explanation
Indices: 13192462--13192543 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
13192452 ACGACTAGTT
* *
13192462 ATTTTCATGAATCTGTTCATACTATTTACACTATTATTTGTGA
1 ATTTTCATGAATCTGTTCATACTAATTACACTACTATTTGTGA
* * *
13192505 ATTTTCATGAATTTGATT-ATATTAATTACCCTACTATTT
1 ATTTTCATGAATCTG-TTCATACTAATTACACTACTATTT
13192544 TAATCCAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
43 31 0.94
44 2 0.06
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.50
Consensus pattern (43 bp):
ATTTTCATGAATCTGTTCATACTAATTACACTACTATTTGTGA
Found at i:13197725 original size:55 final size:55
Alignment explanation
Indices: 13197638--13197750 Score: 172
Period size: 55 Copynumber: 2.1 Consensus size: 55
13197628 TAGATGTGCT
* *
13197638 ACATAACAATCAATGTAAACATATAAATAATCGATTCAAAAGAAGTAATATTCCA
1 ACATAACAATCAATGTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCA
* * * *
13197693 ACATAATAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
1 ACATAACAATCAATGTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCA
13197748 ACA
1 ACA
13197751 ATTAAGAAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.25
Consensus pattern (55 bp):
ACATAACAATCAATGTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCA
Found at i:13202032 original size:21 final size:21
Alignment explanation
Indices: 13202008--13202049 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13201998 AATACCTGGT
*
13202008 AAAAGGTATCGATACTTTTTG
1 AAAAGATATCGATACTTTTTG
* *
13202029 AAAAGATATTGTTACTTTTTG
1 AAAAGATATCGATACTTTTTG
13202050 TAATTGTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (21 bp):
AAAAGATATCGATACTTTTTG
Found at i:13208359 original size:19 final size:19
Alignment explanation
Indices: 13208326--13208365 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
13208316 AAAATATTAT
*
13208326 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
13208345 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
13208364 AT
1 AT
13208366 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:13209548 original size:15 final size:15
Alignment explanation
Indices: 13209524--13209555 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13209514 TATGCATGCA
*
13209524 AAATATAAAAGACAT
1 AAATACAAAAGACAT
13209539 AAATACAAAAGACAT
1 AAATACAAAAGACAT
13209554 AA
1 AA
13209556 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:13215482 original size:23 final size:22
Alignment explanation
Indices: 13215439--13215496 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
13215429 AAAGGGTATC
* *
13215439 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
13215460 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
13215483 TACATATCATATCT
1 TACAAATCATATCT
13215497 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:13215490 original size:17 final size:17
Alignment explanation
Indices: 13215468--13215520 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
13215458 ATTACAAAAT
13215468 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
13215485 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
* *
13215504 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
13215521 TGTTTCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:13215499 original size:19 final size:20
Alignment explanation
Indices: 13215452--13215509 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
13215442 AAATTAAATC
*
13215452 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
13215475 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
13215494 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
13215510 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:13215870 original size:44 final size:44
Alignment explanation
Indices: 13215816--13215999 Score: 128
Period size: 44 Copynumber: 4.3 Consensus size: 44
13215806 CTACTGTAAT
*
13215816 TTTAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
1 TTTAGGGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
* *** * * * *
13215860 TTTAGGGAGATAGGATTTGTTTATT-T-AGCCTGCTCCACTACAAC
1 TTTAGGGAGATAAGA-TCCATCATTCTAATCC-ACTCCGCTACAAC
* * * * * ** * *
13215904 TTCAGGGAGATAAGA-CTA-GATGC-ATTCTGCT-CTCTGCAAC
1 TTTAGGGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
* *
13215944 TTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
1 TTTAGGGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
13215988 TTTAGGGAGATA
1 TTTAGGGAGATA
13216000 GGATTTGTTT
Statistics
Matches: 100, Mismatches: 32, Indels: 16
0.68 0.22 0.11
Matches are distributed among these distances:
40 21 0.21
41 7 0.07
42 4 0.04
43 8 0.08
44 55 0.55
45 5 0.05
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (44 bp):
TTTAGGGAGATAAGATCCATCATTCTAATCCACTCCGCTACAAC
Found at i:13215968 original size:128 final size:129
Alignment explanation
Indices: 13215800--13216044 Score: 456
Period size: 128 Copynumber: 1.9 Consensus size: 129
13215790 TTTGATGCGA
* * *
13215800 TCTGCTCTACTGTAATTTTAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAACTTTAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAACTTTAG
13215865 GGAGATAGGATTTGTTTATTTAGCCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCAT
66 GGAGATAGGATTTGTTTATTTAGCCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCAT
13215929 TCTGCTCT-CTGCAACTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAACTTTAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAACTTTAG
13215993 GGAGATAGGATTTGTTTATTTAGCCTGCTCCACTACAACTTCAGGGAGATAA
66 GGAGATAGGATTTGTTTATTTAGCCTGCTCCACTACAACTTCAGGGAGATAA
13216045 AATTTGCCAT
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
128 105 0.93
129 8 0.07
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (129 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACAACTTTAG
GGAGATAGGATTTGTTTATTTAGCCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCAT
Found at i:13216050 original size:44 final size:44
Alignment explanation
Indices: 13215848--13216050 Score: 150
Period size: 44 Copynumber: 4.7 Consensus size: 44
13215838 TTCTAATCCA
* * * *
13215848 CTCCGCTACAACTTTAGGGAGATAGGATTTGTTTATTTAGCCTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTTCATTTAGCCTG
* * *
13215892 CTCCACTACAACTTCAGGGAGATAAGACTAGATGCA-TT---CTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTG-TTCATTTAGCCTG
* * * *** * *
13215933 CT-CTCTGCAACTTCAGAGAGATAAGA-TCCATCATTCTAATCC-A
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTTCATT-T-AGCCTG
* * * *
13215976 CTCCGCTACAACTTTAGGGAGATAGGATTTGTTTATTTAGCCTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTTCATTTAGCCTG
*
13216020 CTCCACTACAACTTCAGGGAGATAAAATTTG
1 CTCCACTACAACTTCAGGGAGATAAGATTTG
13216051 CCATCTTCAA
Statistics
Matches: 119, Mismatches: 30, Indels: 20
0.70 0.18 0.12
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 22 0.18
41 5 0.04
43 5 0.04
44 76 0.64
45 7 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAGATAAGATTTGTTCATTTAGCCTG
Found at i:13216405 original size:44 final size:44
Alignment explanation
Indices: 13216351--13216815 Score: 512
Period size: 44 Copynumber: 10.7 Consensus size: 44
13216341 GCTATTTTCC
* * * *
13216351 ACCTACTCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCA
1 ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTTA
* *
13216395 ACCTATTCCACTACTGAC-CAGGGAGATAGGA-CCTACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTC-ACAATCTTTA
* * * * *
13216439 ATCTATTCCACTGCTAC-CTAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTC-AGGGAGATAGGATTCACAATCTTTA
* * *
13216483 ACCTATTCCACTGCTG-TCAAGGGAGATGGGATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTC-AGGGAGATAGGATTCACAATCTTTA
13216527 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTTA
13216571 ACCTATTCCACTGCTG-TCCAGGGAGATAGGA-T-----TCTTTA
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTTA
* * * *
13216609 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTTA
1 ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTTA
13216653 ACCTATTCCACTGCTGACT-AGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTTA
*
13216697 ACCTATTCCACTGCTG-TCCAAGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTTA
* *
13216741 ACCTATTCCACTGCTG-TCCAGGGAGATAGGATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTTA
* **
13216785 AACTATTCCACTATTGAC-CAGGGAGATAGGA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGA
13216816 CTGAGGTCAT
Statistics
Matches: 365, Mismatches: 35, Indels: 42
0.83 0.08 0.10
Matches are distributed among these distances:
38 33 0.09
39 1 0.00
42 1 0.00
43 4 0.01
44 322 0.88
45 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTTA
Found at i:13216464 original size:88 final size:86
Alignment explanation
Indices: 13216351--13216815 Score: 564
Period size: 88 Copynumber: 5.4 Consensus size: 86
13216341 GCTATTTTCC
* * * * * *
13216351 ACCTACTCCACTGCTG-CTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCA
13216415 GGGAGATAGGACCTACAATCTTTA
65 GGGAGATAGGA-CT-CAATCTTTA
* * * * *
13216439 ATCTATTCCACTGCT-ACCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGTCAA
1 ACCTATTCCACTGCTGACC-AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCA
* *
13216503 GGGAGATGGGATTCTCAATCTTCA
65 GGGAGATAGGA--CTCAATCTTTA
13216527 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
13216592 GGAGATAGGA-T---TCTTTA
66 GGAGATAGGACTCAATCTTTA
* * * * * *
13216609 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTTAACCTATTCCACTGCTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
*
13216674 GGAGATAGGATTCACAATCTTTA
66 GGAGATAGGA--CTCAATCTTTA
* *
13216697 ACCTATTCCACTGCTGTCCAAGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
*
13216762 GGAGATAGGATTCTCAATCTTCA
66 GGAGATAGGA--CTCAATCTTTA
* **
13216785 AACTATTCCACTATTGACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
13216816 CTGAGGTCAT
Statistics
Matches: 327, Mismatches: 40, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
82 74 0.23
85 1 0.00
87 1 0.00
88 246 0.75
89 5 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (86 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
GGAGATAGGACTCAATCTTTA
Found at i:13216658 original size:170 final size:169
Alignment explanation
Indices: 13216351--13216775 Score: 634
Period size: 170 Copynumber: 2.5 Consensus size: 169
13216341 GCTATTTTCC
* * * * * *
13216351 ACCTACTCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGC-CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
*
13216416 GGAGATAGGACCTACAATCTTTAATCTATTCCACTGCTACCTAGGGAGATAGAATTCTCAATCTT
65 GGAGATAGGA--T----TCTTTAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTT
* * *
13216481 CAACCTATTCCACTGCTGTCAAGGGAGATGGGATTCTCAATCTTCA
124 CAACCTATTCCACTGCTGACAAGGGAGATAGGATTCACAATCTTCA
13216527 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
1 ACCTATTCCACTGCTG-CCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
* *
13216592 GGAGATAGGATTCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTTAACCT
65 GGAGATAGGATTCTTTAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTTCAACCT
* *
13216657 ATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTA
130 ATTCCACTGCTGACAAGGGAGATAGGATTCACAATCTTCA
*
13216697 ACCTATTCCACTGCTGTCCAAGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
1 ACCTATTCCACTGCTG-CCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
13216762 GGAGATAGGATTCT
65 GGAGATAGGATTCT
13216776 CAATCTTCAA
Statistics
Matches: 232, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
170 163 0.70
174 1 0.00
176 67 0.29
177 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (169 bp):
ACCTATTCCACTGCTGCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGG
GAGATAGGATTCTTTAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTTCAACCTA
TTCCACTGCTGACAAGGGAGATAGGATTCACAATCTTCA
Found at i:13216738 original size:214 final size:214
Alignment explanation
Indices: 13216397--13216815 Score: 628
Period size: 214 Copynumber: 2.0 Consensus size: 214
13216387 GATCTTCAAC
* *
13216397 CTATTCCACTACTGACCAGGGAGATAGGACCTACAATCTTTAATCTATTCCACTGCTACCTAGGG
1 CTATTCCACTACTGACCAGGGAGATAGAACCTACAATCTTTAACCTATTCCACTGCTACCTAGGG
* * *
13216462 AGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGTCAAGGGAGATGGGATTCTCAATCTTCA
66 AGATAGAATTCACAATCTTCAACCTATTCCACTGCTGTCAAGGGAGATAGGATTCACAATCTTCA
* * * *
13216527 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
131 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAAACTATTCCACTACTGACCAG
13216592 GGAGATAGGATTCTTTAAT
196 GGAGATAGGATTCTTTAAT
* * *
13216611 CTATTCCACTGCTGCCCAGGGAGATAGAATTCT-CAATCTTTAACCTATTCCACTGCTGA-CTAG
1 CTATTCCACTACTGACCAGGGAGATAGAA-CCTACAATCTTTAACCTATTCCACTGCT-ACCTAG
* *
13216674 GGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAA-GGAGATAGGATTCACAATCT
64 GGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGT-CAAGGGAGATAGGATTCACAATCT
* * * *
13216738 TTAACCTATTCCACTGCTGTCCAGGGAGATAGGATTCTCAATCTTCAAACTATTCCACTATTGAC
128 TCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAAACTATTCCACTACTGAC
13216803 CAGGGAGATAGGA
193 CAGGGAGATAGGA
13216816 CTGAGGTCAT
Statistics
Matches: 184, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
214 178 0.97
215 6 0.03
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (214 bp):
CTATTCCACTACTGACCAGGGAGATAGAACCTACAATCTTTAACCTATTCCACTGCTACCTAGGG
AGATAGAATTCACAATCTTCAACCTATTCCACTGCTGTCAAGGGAGATAGGATTCACAATCTTCA
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAAACTATTCCACTACTGACCAG
GGAGATAGGATTCTTTAAT
Found at i:13216951 original size:88 final size:88
Alignment explanation
Indices: 13216825--13217048 Score: 333
Period size: 88 Copynumber: 2.5 Consensus size: 88
13216815 ACTGAGGTCA
* * * * *
13216825 TCGATCTGCTTCGCTATCGGTGTAGGAAGGCAAGATCTGCTATTTTTAACGTGCGCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAACCTGCGCCACTGCAAC
*
13216890 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAAGCTGGTGTCT
* * * *
13216913 TTGATCTACTTCGCTGTCAGTGCAAGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAACCTGCGCCACTGCAAC
*
13216978 CTAGGGAGGCAAAGCTGGTGTCT
66 CCAGGGAGGCAAAGCTGGTGTCT
13217001 TCGATCTGCTTCGCTGTCGGTGC-AGTAAGGCAAGATCTGCTATTTTTA
1 TCGATCTGCTTCGCTGTCGGTGCAAG-AAGGCAAGATCTGCTATTTTTA
13217049 CCGATCTGCT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
87 2 0.02
88 119 0.98
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAACCTGCGCCACTGCAAC
CCAGGGAGGCAAAGCTGGTGTCT
Found at i:13223581 original size:15 final size:13
Alignment explanation
Indices: 13223561--13223598 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
13223551 TATATGTAGG
13223561 TATAATAATATATAA
1 TATAATAATA-A-AA
13223576 TATAATAATAAAA
1 TATAATAATAAAA
13223589 -ATAATAATAA
1 TATAATAATAA
13223599 CAAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TATAATAATAAAA
Found at i:13223603 original size:15 final size:15
Alignment explanation
Indices: 13223577--13223610 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13223567 AATATATAAT
*
13223577 ATAATAATAAAAATA
1 ATAATAACAAAAATA
*
13223592 ATAATAACAAAATTA
1 ATAATAACAAAAATA
13223607 ATAA
1 ATAA
13223611 AATAGGCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAATAACAAAAATA
Found at i:13223856 original size:19 final size:21
Alignment explanation
Indices: 13223818--13223856 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
13223808 CCTTTTTTAA
*
13223818 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
13223839 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
13223857 AAAAGAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:13224058 original size:23 final size:22
Alignment explanation
Indices: 13224015--13224072 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
13224005 AAAGGGTATC
* *
13224015 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
13224036 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
13224059 TACATATCATATCT
1 TACAAATCATATCT
13224073 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:13224066 original size:17 final size:17
Alignment explanation
Indices: 13224044--13224096 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
13224034 ATTACAAAAT
13224044 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
13224061 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
* *
13224080 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
13224097 TGTTTCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:13224075 original size:19 final size:20
Alignment explanation
Indices: 13224028--13224085 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
13224018 AAATTAAATC
*
13224028 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
13224051 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
13224070 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
13224086 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:13226766 original size:35 final size:35
Alignment explanation
Indices: 13226715--13226784 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
13226705 CGCCCCAAAA
*
13226715 TTGGGGTTAAAATTATTCAGGTTAGTCGGTTGGAT
1 TTGGGGTTAAAATTATTCAGGTTAGTCAGTTGGAT
*
13226750 TTGGGGTTAAAGTTATTCAGGTTAGTCAGTTGGAT
1 TTGGGGTTAAAATTATTCAGGTTAGTCAGTTGGAT
13226785 CAGTGGTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.23, C:0.06, G:0.31, T:0.40
Consensus pattern (35 bp):
TTGGGGTTAAAATTATTCAGGTTAGTCAGTTGGAT
Found at i:13228666 original size:20 final size:20
Alignment explanation
Indices: 13228628--13228666 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13228618 ATTCATAAGT
* *
13228628 AATCATAAGTATTCTAATTC
1 AATCATAAGTATGCAAATTC
*
13228648 AATCATAATTATGCAAATT
1 AATCATAAGTATGCAAATT
13228667 GTCCTTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (20 bp):
AATCATAAGTATGCAAATTC
Found at i:13229804 original size:74 final size:75
Alignment explanation
Indices: 13229725--13229881 Score: 167
Period size: 74 Copynumber: 2.1 Consensus size: 75
13229715 CACTCGTCAA
* * * * *
13229725 ATAAACTAGCGGA-AGTTGTGCCCAACGCTAGTCAGATATACCGACTA-AT-AATCAATGAGCCC
1 ATAAACCAGC-GATAGTTGAGCCCAACGCTAGCCAGATAAACCGACAATATAAAT-AATGAGCCC
*
13229787 AGCTCTGGTTGG
64 AGCTCTAGTTGG
* ** * * *
13229799 ATAAACCAGCGATATTTGAGCCCAGTGCTAGCCGGATAAACCGACAATATAAATAGTGAGCTCAG
1 ATAAACCAGCGATAGTTGAGCCCAACGCTAGCCAGATAAACCGACAATATAAATAATGAGCCCAG
13229864 CTCTAGTTGG
66 CTCTAGTTGG
13229874 ATAAACCA
1 ATAAACCA
13229882 ATGGTATTTG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
73 2 0.03
74 35 0.51
75 28 0.41
76 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (75 bp):
ATAAACCAGCGATAGTTGAGCCCAACGCTAGCCAGATAAACCGACAATATAAATAATGAGCCCAG
CTCTAGTTGG
Found at i:13229917 original size:75 final size:74
Alignment explanation
Indices: 13229751--13229961 Score: 189
Period size: 75 Copynumber: 2.8 Consensus size: 74
13229741 TGTGCCCAAC
* * * * *
13229751 GCTAGTCAGATATACCGACTA-AT-AATCAATGAGCCCAGCTCTGGTTGGATAAACCAGCGATAT
1 GCTAGTCAGGTATACCGACAATATAAAT-AGTGAG-CCAGCTCTAGTTGGATAAACCAACGATAT
13229814 TTGAGCCCAGT
64 TTGAGCCCAGT
* * * *
13229825 GCTAG-CCGGATAAACCGACAATATAAATAGTGAGCTCAGCTCTAGTTGGATAAACCAATGGTAT
1 GCTAGTCAGG-TATACCGACAATATAAATAGTGAGC-CAGCTCTAGTTGGATAAACCAACGATAT
*
13229889 TTGCA-CTCAGT
64 TTG-AGCCCAGT
* ** * *
13229900 TCTAGTCAGGTATACCGACGGT-TATAATTGTGAGCCTAGCTCTAGTTGGATGAACCAACGAT
1 GCTAGTCAGGTATACCGACAATATA-AATAGTGAGCC-AGCTCTAGTTGGATAAACCAACGAT
13229962 GACTTTCATG
Statistics
Matches: 110, Mismatches: 19, Indels: 15
0.76 0.13 0.10
Matches are distributed among these distances:
73 2 0.02
74 18 0.16
75 83 0.75
76 7 0.06
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (74 bp):
GCTAGTCAGGTATACCGACAATATAAATAGTGAGCCAGCTCTAGTTGGATAAACCAACGATATTT
GAGCCCAGT
Found at i:13230937 original size:69 final size:69
Alignment explanation
Indices: 13230850--13230988 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
13230840 AAAACACTTT
13230850 GGGACTAAAAGAAATCATTTGAAAAGTTAAAGAAGAATTTGCAAAATTTTTGACTACAAGGTTCA
1 GGGACTAAAAGAAATCATTTGAAAAGTTAAAGAAGAATTTGCAAAATTTTTGACTACAAGGTTCA
13230915 CACG
66 CACG
* *
13230919 GGGACTAATAGAAATCATTTGAAAAGTTAAAGAAGAATTTGCAAAATTTTTGACTACAGGGTTCA
1 GGGACTAAAAGAAATCATTTGAAAAGTTAAAGAAGAATTTGCAAAATTTTTGACTACAAGGTTCA
13230984 CACG
66 CACG
13230988 G
1 G
13230989 TAGTGTGGCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.27
Consensus pattern (69 bp):
GGGACTAAAAGAAATCATTTGAAAAGTTAAAGAAGAATTTGCAAAATTTTTGACTACAAGGTTCA
CACG
Found at i:13233153 original size:99 final size:99
Alignment explanation
Indices: 13233022--13233218 Score: 324
Period size: 99 Copynumber: 2.0 Consensus size: 99
13233012 ATTTACTTGT
* *
13233022 TTTTCTATCTCTGAGAATCTTCATACCAAGTATCTTCTTTGCTAATCCCAAGTCTTTCATCTCAA
1 TTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTAATCCCAAATCTTTCATCTCAA
* *
13233087 ATTCTTTATTTAGTTGGGC-TTAGACCTTTCTTAC
66 ATTCTTCACTTAGTTGGGCTTTA-ACCTTTCTTAC
**
13233121 TTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCCAAATCTTTCATCTCAA
1 TTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTAATCCCAAATCTTTCATCTCAA
13233186 ATTCTTCACTTAGTTGGGCTTTAACCTTTCTTA
66 ATTCTTCACTTAGTTGGGCTTTAACCTTTCTTA
13233219 TCTCTCCTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 88 0.97
100 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (99 bp):
TTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTAATCCCAAATCTTTCATCTCAA
ATTCTTCACTTAGTTGGGCTTTAACCTTTCTTAC
Found at i:13238761 original size:732 final size:732
Alignment explanation
Indices: 13237358--13238821 Score: 2928
Period size: 732 Copynumber: 2.0 Consensus size: 732
13237348 TCACCATCGT
13237358 TGTAATCTTCTACAACATCAGCTTTACCAGAATTTTCTAGTTGTTTTCCATTTTGATTCGCAACC
1 TGTAATCTTCTACAACATCAGCTTTACCAGAATTTTCTAGTTGTTTTCCATTTTGATTCGCAACC
13237423 TCCCTTTTGATCTTATTTTGTAGCTTATATCACTCAGATTTAATGTGCCCTTTCTTCTTGAAAAA
66 TCCCTTTTGATCTTATTTTGTAGCTTATATCACTCAGATTTAATGTGCCCTTTCTTCTTGAAAAA
13237488 GTTACAAGTTTTACCTCTGTTTGAAAACTTCGATCTACCTTTAGATTTGCTGCGAGGATTTTGCT
131 GTTACAAGTTTTACCTCTGTTTGAAAACTTCGATCTACCTTTAGATTTGCTGCGAGGATTTTGCT
13237553 CATGTGTCCTTCCACGATCATCATCAGCATTCCGATCTTGTCTCCCACGAACAATAAGACCCTCT
196 CATGTGTCCTTCCACGATCATCATCAGCATTCCGATCTTGTCTCCCACGAACAATAAGACCCTCT
13237618 CCCTGAGAGTCGATTTTAACCACAAGATGTTTCATCTTATCATACAAGGTTAAAGAATCATAAAC
261 CCCTGAGAGTCGATTTTAACCACAAGATGTTTCATCTTATCATACAAGGTTAAAGAATCATAAAC
13237683 CTCATCAACTGTGAGAGACTCGCTGCTATATAAAATCGTATCTCTAAAGGTTGAATAAGACGGGG
326 CTCATCAACTGTGAGAGACTCGCTGCTATATAAAATCGTATCTCTAAAGGTTGAATAAGACGGGG
13237748 GCAACGAACAAAGTAGAATCAACCCTAGGTCTTCCTTATCATACTGAACCTCCATGGCCTCCAAG
391 GCAACGAACAAAGTAGAATCAACCCTAGGTCTTCCTTATCATACTGAACCTCCATGGCCTCCAAG
13237813 TTTGAGAGAATTTCTTTAAACACTGTTAAGTGTTCATGCACAGATGCACCTTCCTCCAAACGATG
456 TTTGAGAGAATTTCTTTAAACACTGTTAAGTGTTCATGCACAGATGCACCTTCCTCCAAACGATG
13237878 AGCATAAAGACGCTGCTTCATATGCAGCTTGCTAGTTAGAGTTTTCGACATACATATTTGTTCCA
521 AGCATAAAGACGCTGCTTCATATGCAGCTTGCTAGTTAGAGTTTTCGACATACATATTTGTTCCA
13237943 ACCTCTTTTATAATCCAGCGGCGGTCTTCTCCTTCATCACATCCTGCAAAATTTTGTTAGACAAA
586 ACCTCTTTTATAATCCAGCGGCGGTCTTCTCCTTCATCACATCCTGCAAAATTTTGTTAGACAAA
13238008 TACAGATGTAACTGTGTTAACGCCTTTCGATCCTTGCGCTTCTTCTCTTCCTCCGTCAATGTTGA
651 TACAGATGTAACTGTGTTAACGCCTTTCGATCCTTGCGCTTCTTCTCTTCCTCCGTCAATGTTGA
13238073 AAGGCATCTTATATATC
716 AAGGCATCTTATATATC
13238090 TGTAATCTTCTACAACATCAGCTTTACCAGAATTTTCTAGTTGTTTTCCATTTTGATTCGCAACC
1 TGTAATCTTCTACAACATCAGCTTTACCAGAATTTTCTAGTTGTTTTCCATTTTGATTCGCAACC
13238155 TCCCTTTTGATCTTATTTTGTAGCTTATATCACTCAGATTTAATGTGCCCTTTCTTCTTGAAAAA
66 TCCCTTTTGATCTTATTTTGTAGCTTATATCACTCAGATTTAATGTGCCCTTTCTTCTTGAAAAA
13238220 GTTACAAGTTTTACCTCTGTTTGAAAACTTCGATCTACCTTTAGATTTGCTGCGAGGATTTTGCT
131 GTTACAAGTTTTACCTCTGTTTGAAAACTTCGATCTACCTTTAGATTTGCTGCGAGGATTTTGCT
13238285 CATGTGTCCTTCCACGATCATCATCAGCATTCCGATCTTGTCTCCCACGAACAATAAGACCCTCT
196 CATGTGTCCTTCCACGATCATCATCAGCATTCCGATCTTGTCTCCCACGAACAATAAGACCCTCT
13238350 CCCTGAGAGTCGATTTTAACCACAAGATGTTTCATCTTATCATACAAGGTTAAAGAATCATAAAC
261 CCCTGAGAGTCGATTTTAACCACAAGATGTTTCATCTTATCATACAAGGTTAAAGAATCATAAAC
13238415 CTCATCAACTGTGAGAGACTCGCTGCTATATAAAATCGTATCTCTAAAGGTTGAATAAGACGGGG
326 CTCATCAACTGTGAGAGACTCGCTGCTATATAAAATCGTATCTCTAAAGGTTGAATAAGACGGGG
13238480 GCAACGAACAAAGTAGAATCAACCCTAGGTCTTCCTTATCATACTGAACCTCCATGGCCTCCAAG
391 GCAACGAACAAAGTAGAATCAACCCTAGGTCTTCCTTATCATACTGAACCTCCATGGCCTCCAAG
13238545 TTTGAGAGAATTTCTTTAAACACTGTTAAGTGTTCATGCACAGATGCACCTTCCTCCAAACGATG
456 TTTGAGAGAATTTCTTTAAACACTGTTAAGTGTTCATGCACAGATGCACCTTCCTCCAAACGATG
13238610 AGCATAAAGACGCTGCTTCATATGCAGCTTGCTAGTTAGAGTTTTCGACATACATATTTGTTCCA
521 AGCATAAAGACGCTGCTTCATATGCAGCTTGCTAGTTAGAGTTTTCGACATACATATTTGTTCCA
13238675 ACCTCTTTTATAATCCAGCGGCGGTCTTCTCCTTCATCACATCCTGCAAAATTTTGTTAGACAAA
586 ACCTCTTTTATAATCCAGCGGCGGTCTTCTCCTTCATCACATCCTGCAAAATTTTGTTAGACAAA
13238740 TACAGATGTAACTGTGTTAACGCCTTTCGATCCTTGCGCTTCTTCTCTTCCTCCGTCAATGTTGA
651 TACAGATGTAACTGTGTTAACGCCTTTCGATCCTTGCGCTTCTTCTCTTCCTCCGTCAATGTTGA
13238805 AAGGCATCTTATATATC
716 AAGGCATCTTATATATC
13238822 CCTAGCAGGG
Statistics
Matches: 732, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
732 732 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (732 bp):
TGTAATCTTCTACAACATCAGCTTTACCAGAATTTTCTAGTTGTTTTCCATTTTGATTCGCAACC
TCCCTTTTGATCTTATTTTGTAGCTTATATCACTCAGATTTAATGTGCCCTTTCTTCTTGAAAAA
GTTACAAGTTTTACCTCTGTTTGAAAACTTCGATCTACCTTTAGATTTGCTGCGAGGATTTTGCT
CATGTGTCCTTCCACGATCATCATCAGCATTCCGATCTTGTCTCCCACGAACAATAAGACCCTCT
CCCTGAGAGTCGATTTTAACCACAAGATGTTTCATCTTATCATACAAGGTTAAAGAATCATAAAC
CTCATCAACTGTGAGAGACTCGCTGCTATATAAAATCGTATCTCTAAAGGTTGAATAAGACGGGG
GCAACGAACAAAGTAGAATCAACCCTAGGTCTTCCTTATCATACTGAACCTCCATGGCCTCCAAG
TTTGAGAGAATTTCTTTAAACACTGTTAAGTGTTCATGCACAGATGCACCTTCCTCCAAACGATG
AGCATAAAGACGCTGCTTCATATGCAGCTTGCTAGTTAGAGTTTTCGACATACATATTTGTTCCA
ACCTCTTTTATAATCCAGCGGCGGTCTTCTCCTTCATCACATCCTGCAAAATTTTGTTAGACAAA
TACAGATGTAACTGTGTTAACGCCTTTCGATCCTTGCGCTTCTTCTCTTCCTCCGTCAATGTTGA
AAGGCATCTTATATATC
Found at i:13240081 original size:40 final size:40
Alignment explanation
Indices: 13239952--13240171 Score: 180
Period size: 40 Copynumber: 5.8 Consensus size: 40
13239942 CGGAAGTTAC
* *
13239952 GCCCAGCGCTAG-TGAGATATACCAACGA-AT-AATCAGTGA
1 GCCCAGCGCTAGTTG-GATAAACCGACGATATAAAT-AGTGA
* * * * * *
13239991 GCCCAACTCTGGTTGGATAAACCAATGATAT---T--TGC
1 GCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGA
*
13240026 GCCCAGCGCTAGTTGGATAAACCGACAATATAAATAGTGA
1 GCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGA
* * *
13240066 GCCCAGCTCTAGTTGGATAAACCAACGATAT---T--TGC
1 GCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGA
* *
13240101 GCCCAGCGCTAGTCGGATAAACCGACGATATAAAAAGTGA
1 GCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGA
*
13240141 GCCCAGCTCTAGTTGGATAAACC-ACCGATAT
1 GCCCAGCGCTAGTTGGATAAACCGA-CGATAT
13240172 TTGCACCTAG
Statistics
Matches: 144, Mismatches: 24, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
35 57 0.40
37 1 0.01
38 2 0.01
39 21 0.15
40 63 0.44
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (40 bp):
GCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGA
Found at i:13240086 original size:75 final size:75
Alignment explanation
Indices: 13239951--13240280 Score: 386
Period size: 75 Copynumber: 4.4 Consensus size: 75
13239941 ACGGAAGTTA
* * * *
13239951 CGCCCAGCGCTAG-TGAGATATACCAACGA-AT-AATCAGTGAGCCCAACTCTGGTTGGATAAAC
1 CGCCCAGCGCTAGTTG-GATAAACCGACGATATAAAT-AGTGAGCCCAGCTCTAGTTGGATAAAC
*
13240013 CAATGATATTTG
64 CAACGATATTTG
*
13240025 CGCCCAGCGCTAGTTGGATAAACCGACAATATAAATAGTGAGCCCAGCTCTAGTTGGATAAACCA
1 CGCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAACCA
13240090 ACGATATTTG
66 ACGATATTTG
* *
13240100 CGCCCAGCGCTAGTCGGATAAACCGACGATATAAAAAGTGAGCCCAGCTCTAGTTGGATAAACCA
1 CGCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAACCA
*
13240165 CCGATATTTG
66 ACGATATTTG
* * * * * * * *
13240175 CACCTAGTGCTAG-TCGAGTATACCAACGAT-TATAATTGTGAGCCCAGCTCTAGTTGGATGAA-
1 CGCCCAGCGCTAGTTGGA-TAAACCGACGATATA-AATAGTGAGCCCAGCTCTAGTTGGATAAAC
13240237 CAACGATGA-TTG
64 CAACGAT-ATTTG
* * *
13240249 CGCCCAGCGCTAGTCGGATGAACCGACAATAT
1 CGCCCAGCGCTAGTTGGATAAACCGACGATAT
13240281 CAATTACTCA
Statistics
Matches: 218, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
74 54 0.25
75 161 0.74
76 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (75 bp):
CGCCCAGCGCTAGTTGGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAACCA
ACGATATTTG
Found at i:13240129 original size:35 final size:35
Alignment explanation
Indices: 13239878--13240280 Score: 154
Period size: 35 Copynumber: 11.0 Consensus size: 35
13239868 CGCAAAAGAG
* * *
13239878 TTTGCGCCCAGCGCTAGTCGGATAAATCGA-AAAA
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
* * * * * *
13239912 TGTGTGCCCACCACTAGTCAGATAAACTGACGGA-A
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGAC-GATA
* * * *
13239947 GTTACGCCCAGCGCTAGT-GAGATATACCAACGAATAA
1 TTTGCGCCCAGCGCTAGTCG-GATAAACCGACG-AT-A
* * * * * * * *
13239984 TCAGTGAGCCCAACTCTGGTTGGATAAACCAATGATA
1 T--TTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
* *
13240021 TTTGCGCCCAGCGCTAGTTGGATAAACCGACAATA
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
* * * *
13240056 TAAATAGTGAGCCCAGCTCTAGTTGGATAAACCAACGATA
1 T---T--TGCGCCCAGCGCTAGTCGGATAAACCGACGATA
13240096 TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
* * * *
13240131 TAAAAAGTGAGCCCAGCTCTAGTTGGATAAACC-ACCGATA
1 T-----TTGCGCCCAGCGCTAGTCGGATAAACCGA-CGATA
* * * **
13240171 TTTGCACCTAGTGCTAGTCGAGTATACCAA-CGATTATAA
1 TTTGCGCCCAGCGCTAGTCG-G-ATA--AACCGACGAT-A
* * * * *
13240210 TTGTGAGCCCAGCTCTAGTTGGATGAA-CAACGATGA
1 TT-TGCGCCCAGCGCTAGTCGGATAAACCGACGAT-A
* *
13240246 -TTGCGCCCAGCGCTAGTCGGATGAACCGACAATA
1 TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
13240280 T
1 T
13240281 CAATTACTCA
Statistics
Matches: 268, Mismatches: 72, Indels: 57
0.68 0.18 0.14
Matches are distributed among these distances:
34 46 0.17
35 97 0.36
36 9 0.03
37 7 0.03
38 8 0.03
39 29 0.11
40 72 0.27
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.22
Consensus pattern (35 bp):
TTTGCGCCCAGCGCTAGTCGGATAAACCGACGATA
Found at i:13240355 original size:20 final size:21
Alignment explanation
Indices: 13240307--13240355 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
13240297 AGTCTATAAA
*
13240307 ATCACATTTCATAATCTTAAT
1 ATCACATTTCATAATCTCAAT
**
13240328 ATTGCATTTCATAA-CTCAAT
1 ATCACATTTCATAATCTCAAT
13240348 ATCACATT
1 ATCACATT
13240356 CACTTCAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (21 bp):
ATCACATTTCATAATCTCAAT
Found at i:13240384 original size:37 final size:37
Alignment explanation
Indices: 13240340--13240414 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
13240330 TGCATTTCAT
13240340 AACTCAATATCACATTCACTTCAATTATCTATTAATC
1 AACTCAATATCACATTCACTTCAATTATCTATTAATC
*
13240377 AACTCAATATCATATTCACTTCAATTATCTATTAATC
1 AACTCAATATCACATTCACTTCAATTATCTATTAATC
13240414 A
1 A
13240415 TTCATTAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (37 bp):
AACTCAATATCACATTCACTTCAATTATCTATTAATC
Found at i:13240409 original size:17 final size:17
Alignment explanation
Indices: 13240353--13240409 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
13240343 TCAATATCAC
13240353 ATTCACTTCAATTATCT
1 ATTCACTTCAATTATCT
13240370 ATTAATCAAC-TCAA-TATCAT
1 A-T--TC-ACTTCAATTATC-T
13240390 ATTCACTTCAATTATCT
1 ATTCACTTCAATTATCT
13240407 ATT
1 ATT
13240410 AATCATTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
16 2 0.06
17 11 0.33
18 5 0.15
19 5 0.15
20 8 0.24
21 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTCACTTCAATTATCT
Found at i:13244507 original size:16 final size:17
Alignment explanation
Indices: 13244488--13244526 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
13244478 TATGGTATCT
* *
13244488 ACACTTTATTTCC-ATG
1 ACACTTTAATACCTATG
13244504 ACACTTTAATACCTATG
1 ACACTTTAATACCTATG
13244521 ACACTT
1 ACACTT
13244527 ATATAACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (17 bp):
ACACTTTAATACCTATG
Found at i:13248042 original size:4 final size:4
Alignment explanation
Indices: 13248035--13248059 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13248025 GAGGAAGGAG
13248035 AAGA AAGA AAGA AAGA AAGA AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA A
13248060 TGTATGTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:13248326 original size:108 final size:109
Alignment explanation
Indices: 13248127--13248920 Score: 917
Period size: 108 Copynumber: 7.2 Consensus size: 109
13248117 TTTTTTTTTT
* * * *
13248127 TTTGTATTTAGTTTAGTGAT-TTGTG-ATTTGTTATGAATGTAAATTTTTTTATATTTTAAAATT
1 TTTGTATTTAGTTTAGTGTTATTGTGAATTT-TTATGAATGT-AATTTTTTTGTTTTTTTAAATT
* *
13248190 ATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTCTAAATTG
64 ATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * *
13248236 TTTGTGTTTAGTTTAGCGTT-TTGTGAATTTTTATTAATGTAATTTTTTTGTTTTTTTTAATTAT
1 TTTGTATTTAGTTTAGTGTTATTGTGAATTTTTATGAATGTAATTTTTTTGTTTTTTTAAATTAT
* *
13248300 TTTATAGTTATTTTGTTAGTAATTTATGGTTAGGTTATAAATTG
66 TTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * * *
13248344 TTTGTGTTTAGTTTAGTGCT-CTGTGATTTTTTATGAATGTAATTTTTTTATATTTTTTAAATTA
1 TTTGTATTTAGTTTAGTGTTATTGTGAATTTTTATGAATGTAATTTTTTTGT-TTTTTTAAATTA
* * *
13248408 TTTTATAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTG
65 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * *
13248453 TTTGTCTTTAGTTTAATGTTTATTGTGATTTTTTATTAATGTAATTTTTTTTTTTGTTTTTTT-A
1 TTTGTATTTAGTTTAGTG-TTATTGTGAATTTTTATGAATGTAA----TTTTTTTGTTTTTTTAA
* * *
13248517 ATTATTTGAATGTTGTTTTGTTAGTAATTTATGATTAGGTTATAAATTG
61 ATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * *
13248566 TTTGTATTTAGTTTAGTGTTTATTGTG-ATCTTTTACGAATGTATTTTTTTTTGTTTTTTAAAAT
1 TTTGTATTTAGTTTAGTG-TTATTGTGAAT-TTTTATGAATGTA-ATTTTTTTGTTTTTTTAAAT
* * * *
13248630 TATTTTAAAGTTATTTTGTTAGCAATTTATGATTAGATTATAATTTT
63 TATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * * ** *
13248677 TTTGTATTTAGTTTATTGTTTATTGTGACTTGTTATAAATG-AAAATTTTTGTGTTTTTTAAATG
1 TTTGTATTTAGTTTAGTG-TTATTGTGAATTTTTATGAATGTAATTTTTTTGT-TTTTTTAAATT
* *
13248741 ATTTTAAATTTATTTTGTTAGTAATTTATGATTAGATTATAAATTG
64 ATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* * * * *
13248787 CTTGTGTTTAGTTTAGTATTTATTGTGATTTTTTATGAA--TATTTTTTTTGTTTTTTTAAATTA
1 TTTGTATTTAGTTTAGT-GTTATTGTGAATTTTTATGAATGTAATTTTTTTGTTTTTTTAAATTA
*
13248850 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTA
65 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
* *
13248895 TTTG--TTCAGTTTAATGTGTATTGTGA
1 TTTGTATTTAGTTTAGTGT-TATTGTGA
13248921 TTCGTTATAA
Statistics
Matches: 591, Mismatches: 78, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
105 1 0.00
106 17 0.03
108 161 0.27
109 117 0.20
110 102 0.17
111 97 0.16
112 2 0.00
113 80 0.14
114 6 0.01
115 8 0.01
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (109 bp):
TTTGTATTTAGTTTAGTGTTATTGTGAATTTTTATGAATGTAATTTTTTTGTTTTTTTAAATTAT
TTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG
Found at i:13250798 original size:33 final size:33
Alignment explanation
Indices: 13250738--13250800 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
13250728 CTACCATCAC
* *
13250738 AGTACTCCACTCCTCTCAGCTCGTATCCACCTT
1 AGTACTCCACTCCTCTCAGCCCATATCCACCTT
*
13250771 AGTACTCCACTCCTC-CTGACCCATATCCAC
1 AGTACTCCACTCCTCTCAG-CCCATATCCAC
13250801 TGCAGTACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.21, C:0.44, G:0.08, T:0.27
Consensus pattern (33 bp):
AGTACTCCACTCCTCTCAGCCCATATCCACCTT
Found at i:13250808 original size:33 final size:33
Alignment explanation
Indices: 13250720--13250815 Score: 81
Period size: 33 Copynumber: 2.9 Consensus size: 33
13250710 TTTGATATCT
* *
13250720 TCAGCCCACTA-CCATCACAGTACTCCACTCCTC
1 TCAGCCCA-TATCCACCTCAGTACTCCACTCCTC
* * *
13250753 TCAGCTCGTATCCACCTTAGTACTCCACTCCTC
1 TCAGCCCATATCCACCTCAGTACTCCACTCCTC
* *
13250786 -CTGACCCATATCCA-CTGCAGTACTTCACTC
1 TCAG-CCCATATCCACCT-CAGTACTCCACTC
13250816 ATTCGAGCTC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
32 6 0.12
33 44 0.88
ACGTcount: A:0.22, C:0.44, G:0.08, T:0.26
Consensus pattern (33 bp):
TCAGCCCATATCCACCTCAGTACTCCACTCCTC
Found at i:13251069 original size:29 final size:31
Alignment explanation
Indices: 13251017--13251095 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 31
13251007 AAAAATCATA
*
13251017 AGTTAAAGGCTTATTT-AACTACAAAAATA-G
1 AGTTAAGGGCTTATTTAAACTAC-AAAATAGG
*
13251047 -GTTAAGGGCTTATTTAAAC-ACAATATAGTG
1 AGTTAAGGGCTTATTTAAACTACAAAATAG-G
13251077 AGTTGAAGGGCTTATTTAA
1 AGTT-AAGGGCTTATTTAA
13251096 TTCTGTAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 5 0.12
29 16 0.38
30 4 0.10
31 3 0.07
32 14 0.33
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (31 bp):
AGTTAAGGGCTTATTTAAACTACAAAATAGG
Found at i:13254771 original size:25 final size:26
Alignment explanation
Indices: 13254743--13254791 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
13254733 ATAAACATTA
*
13254743 AACTAA-ACAAATAA-TTTATAATAGT
1 AACTAACA-AAATAACTTTAAAATAGT
13254768 AACTAACAAAATAACTTTAAAATA
1 AACTAACAAAATAACTTTAAAATA
13254792 AATTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (26 bp):
AACTAACAAAATAACTTTAAAATAGT
Found at i:13254928 original size:14 final size:14
Alignment explanation
Indices: 13254918--13254952 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
13254908 TTTTCTTTTT
13254918 CTTTCTTTCTTCTC
1 CTTTCTTTCTTCTC
13254932 CTTTCTTTCTTCTCC
1 CTTTCTTTCTTCT-C
13254947 CTTTCT
1 CTTTCT
13254953 CTTTCCTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (14 bp):
CTTTCTTTCTTCTC
Found at i:13255226 original size:6 final size:7
Alignment explanation
Indices: 13255206--13255233 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
13255196 ATATTATTTT
13255206 AATAAAA
1 AATAAAA
13255213 AATAAAA
1 AATAAAA
13255220 AATAAAA
1 AATAAAA
13255227 AATAAAA
1 AATAAAA
13255234 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AATAAAA
Found at i:13257539 original size:13 final size:12
Alignment explanation
Indices: 13257506--13257530 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13257496 TTCCAATATC
13257506 GACAAAAATTAT
1 GACAAAAATTAT
13257518 GACAAAAATTAT
1 GACAAAAATTAT
13257530 G
1 G
13257531 TGAAAAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (12 bp):
GACAAAAATTAT
Found at i:13259459 original size:4 final size:4
Alignment explanation
Indices: 13259450--13259474 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13259440 TGCCAACCAT
13259450 ACAA ACAA ACAA ACAA ACAA ACAA A
1 ACAA ACAA ACAA ACAA ACAA ACAA A
13259475 AAGAGAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
ACAA
Found at i:13265267 original size:36 final size:37
Alignment explanation
Indices: 13265189--13265267 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 37
13265179 ATCCCATTAG
*
13265189 TTTA-TTCAATTTAGTTATGTTTCTATTTATTTTTACT
1 TTTATTTCAATTTAGTTA-GTTTCTATGTATTTTTACT
*
13265226 GTTATTTCAATTTAAGTTA-TTTCTA-GTATTTTTACT
1 TTTATTTCAATTT-AGTTAGTTTCTATGTATTTTTACT
13265262 TTTATT
1 TTTATT
13265268 GGATTTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 15 0.41
37 9 0.24
38 8 0.22
39 5 0.14
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.63
Consensus pattern (37 bp):
TTTATTTCAATTTAGTTAGTTTCTATGTATTTTTACT
Found at i:13266647 original size:3 final size:3
Alignment explanation
Indices: 13266639--13266666 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
13266629 TAAGATATTG
13266639 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
13266667 GATATGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:13271024 original size:15 final size:15
Alignment explanation
Indices: 13270995--13271041 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 15
13270985 ATTTAAATCA
13270995 TTTGTAAAAACATATG
1 TTTGTAAAAA-ATATG
13271011 TTTGTAAAAAATATG
1 TTTGTAAAAAATATG
*
13271026 -CTG-AAAAAATAT-
1 TTTGTAAAAAATATG
13271038 TTTG
1 TTTG
13271042 GAATTGAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 11 0.39
14 2 0.07
15 5 0.18
16 10 0.36
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (15 bp):
TTTGTAAAAAATATG
Found at i:13277395 original size:25 final size:26
Alignment explanation
Indices: 13277362--13277426 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
13277352 AAAAAAATAT
*
13277362 AAAATATATATATGT-ACATATAAG-A
1 AAAATATATATATGTGA-ATAAAAGAA
*
13277387 AAAATATATGTATGTGAATAAAAGAA
1 AAAATATATATATGTGAATAAAAGAA
13277413 ATAAATATATATAT
1 A-AAATATATATAT
13277427 AAATATACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 20 0.59
26 3 0.09
27 11 0.32
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (26 bp):
AAAATATATATATGTGAATAAAAGAA
Found at i:13281062 original size:46 final size:45
Alignment explanation
Indices: 13280995--13281192 Score: 238
Period size: 46 Copynumber: 4.6 Consensus size: 45
13280985 TTTGAGTACT
* *
13280995 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
13281041 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
13281077 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
13281123 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
13281168 TCTGATC-AG-GGACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
13281193 ATCATACGTA
Statistics
Matches: 135, Mismatches: 7, Indels: 23
0.82 0.04 0.14
Matches are distributed among these distances:
36 28 0.21
38 1 0.01
39 2 0.01
40 3 0.02
41 1 0.01
42 4 0.03
43 15 0.11
44 3 0.02
45 20 0.15
46 58 0.43
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:13281077 original size:36 final size:36
Alignment explanation
Indices: 13281031--13281103 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
13281021 GGTAGCTTTA
13281031 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
13281067 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
13281103 G
1 G
13281104 GTAGCCTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:13281098 original size:82 final size:82
Alignment explanation
Indices: 13280995--13281149 Score: 274
Period size: 82 Copynumber: 1.9 Consensus size: 82
13280985 TTTGAGTACT
* *
13280995 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
13281060 GATAAGTGCTATACTTA
66 GATAAGTGCTATACTTA
* *
13281077 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
13281142 GATAAGTG
66 GATAAGTG
13281150 GTAGCCTAGC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 69 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTATACTTA
Found at i:13282350 original size:44 final size:45
Alignment explanation
Indices: 13282302--13282530 Score: 211
Period size: 44 Copynumber: 5.2 Consensus size: 45
13282292 CGCTTCAAAA
* * *
13282302 AGATATGACTTG-TATCCTCAATCTGCTCCACTGCAACTTCAGAG
1 AGATAAGACTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGG
** * *
13282346 AGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGGG
1 AGATAAGACTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
13282391 AGATAGGA-TTAG-TAGCTTCAGTCTGCTCCACTGCAACTTCAGGG
1 AGATAAGACTT-GCTATCTTCAATCTGCTCCACTGCAACTTCAGGG
* *
13282435 AGATAAGACTCGCTATCTTCAA-CTTGCCCCACTGCAACTTCAGGG
1 AGATAAGACTTGCTATCTTCAATC-TGCTCCACTGCAACTTCAGGG
* * * * * *
13282480 GGATAAG-GTTAG-TGAT-TTCAACCTGCTCTACTACAACTTCAGAG
1 AGATAAGACTT-GCT-ATCTTCAATCTGCTCCACTGCAACTTCAGGG
13282524 AGATAAG
1 AGATAAG
13282531 GTTTGATAAG
Statistics
Matches: 153, Mismatches: 24, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
44 80 0.52
45 73 0.48
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (45 bp):
AGATAAGACTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGG
Found at i:13282377 original size:45 final size:44
Alignment explanation
Indices: 13282313--13282533 Score: 232
Period size: 45 Copynumber: 5.0 Consensus size: 44
13282303 GATATGACTT
* * *
13282313 GTATCCTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTT
1 GTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
* *
13282357 GCTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAGAT-AGGATTA
1 G-TATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGG-TTA
* * ** *
13282402 GTAGCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTC
1 GTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
* *
13282446 GCTATCTTCAA-CTTGCCCCACTGCAACTTCAGGGGGATAAGGTTA
1 G-TATCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGGTTA
* * * *
13282491 GTGAT-TTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTT
1 GT-ATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTT
13282534 TGATAAGATC
Statistics
Matches: 148, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
44 73 0.49
45 75 0.51
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
GTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
Found at i:13282450 original size:89 final size:89
Alignment explanation
Indices: 13282319--13282530 Score: 259
Period size: 89 Copynumber: 2.4 Consensus size: 89
13282309 ACTTGTATCC
** * * * *
13282319 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGCTATCTTC-AGTCTGCTCCACTGTAA
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTCGCTATCTTCAACT-TGCCCCACTGCAA
13282383 CTTCAGGGAGAT-AGGATTAGT-AGCT
65 CTTCAGGGAGATAAGG-TTAGTGA-CT
* *
13282408 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTATCTTCAACTTGCCCCACTGCAAC
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTCGCTATCTTCAACTTGCCCCACTGCAAC
* *
13282473 TTCAGGGGGATAAGGTTAGTGATT
66 TTCAGGGAGATAAGGTTAGTGACT
* * *
13282497 TCAACCTGCTCTACTACAACTTCAGAGAGATAAG
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAG
13282531 GTTTGATAAG
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 99 0.94
90 6 0.06
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (89 bp):
TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTCGCTATCTTCAACTTGCCCCACTGCAAC
TTCAGGGAGATAAGGTTAGTGACT
Found at i:13282531 original size:44 final size:43
Alignment explanation
Indices: 13282319--13282570 Score: 208
Period size: 44 Copynumber: 5.8 Consensus size: 43
13282309 ACTTGTATCC
*
13282319 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGCTATCT
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTAG-TAT-T
* * * *
13282364 TCAGTCTGCTCCACTGTAACTTCAGGGAGAT-AGGATTAGTAGCT
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGG-TTAGTA-TT
* * ** *
13282408 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTATCT
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTAG-TAT-T
* * *
13282453 TCAA-CTTGCCCCACTGCAACTTCAGGGGGATAAGGTTAGTGATT
1 TCAATC-TGCTCCACTGCAACTTCAGAGAGATAAGGTTAGT-ATT
* * * *
13282497 TCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTG-A--
1 TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTAGTATT
* * *
13282537 TAAGATCTACTCTACTGCAACTTCAGAGAGATAA
1 TCA-ATCTGCTCCACTGCAACTTCAGAGAGATAA
13282571 AATCAGTAAT
Statistics
Matches: 172, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.01
41 27 0.16
42 1 0.01
44 72 0.42
45 70 0.41
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
TCAATCTGCTCCACTGCAACTTCAGAGAGATAAGGTTAGTATT
Found at i:13282771 original size:100 final size:100
Alignment explanation
Indices: 13282631--13282995 Score: 527
Period size: 100 Copynumber: 3.6 Consensus size: 100
13282621 AGATTCGTTA
* * * * * *
13282631 TTGTAGCTTCAATTTGTTCCATTACACCGTCAGGGAAGTAAGATTCGTTGTTGTAGG-TTCAACC
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGT-GGCTTCAATC
* *
13282695 TTTTTAACTACAATGTCGGGGAAGCAAGATTCACTG
65 TTTTTAATTACAATGTTGGGGAAGCAAGATTCACTG
* * * **
13282731 TTGTAGCTTCAATCTGTTCCACTGTACCACCAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
*
13282796 TTTTAATTACAATGTTGGGGAAGCAAGATTCACCG
66 TTTTAATTACAATGTTGGGGAAGCAAGATTCACTG
*
13282831 TTGTAGCTTCAATTTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
*
13282896 TTTTAATTGCAATGTTGGGGAAGCAAGATTCA-TCG
66 TTTTAATTACAATGTTGGGGAAGCAAGATTCACT-G
* * *
13282931 TTGTAGCTTCAAGCTGTTCCACTGCACCGCCAGGGAAGTAAGATTTGCCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
13282996 GCTCTACTGC
Statistics
Matches: 237, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
99 2 0.01
100 235 0.99
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (100 bp):
TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
TTTTAATTACAATGTTGGGGAAGCAAGATTCACTG
Found at i:13283026 original size:200 final size:200
Alignment explanation
Indices: 13282631--13283039 Score: 536
Period size: 200 Copynumber: 2.0 Consensus size: 200
13282621 AGATTCGTTA
* * *
13282631 TTGTAGCTTCAATTTGTTCCATTACACCGTCAGGGAAGTAAGATTCGTTGTTGTAGGTTCAACCT
1 TTGTAGCTTCAATTTGTTCCACTACACCGCCAGGGAAGTAAGATTCGTCGTTGTAGGTTCAACCT
* *
13282696 TTTTAACTACAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGTACCAC
66 TTTTAACTACAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAAGCTGTTCCACTGCACCAC
* * * * ****
13282761 CAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTACAATGTTGGGGAAGCAAGATT
131 CAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCTCTCTAACTACAACGCCAAGGAAGCAAGATT
13282826 CACCG
196 CACCG
* *
13282831 TTGTAGCTTCAATTTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGT-GGCTTCAATC
1 TTGTAGCTTCAATTTGTTCCACTACACCGCCAGGGAAGTAAGATTCGTCGTTGTAGG-TTCAACC
* * *
13282895 TTTTTAATTGCAATGTTGGGGAAGCAAGATTCA-TCGTTGTAGCTTCAAGCTGTTCCACTGCACC
65 TTTTTAACTACAATGTCGGGGAAGCAAGATTCACT-GTTGTAGCTTCAAGCTGTTCCACTGCACC
* * ** * * *
13282959 GCCAGGGAAGTAAGATTTGCCGTTGTGGCTTCAATCTGCTCT-ACTGCACCGCCAAGGAAGGAAG
129 ACCAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCT-CTCTAACTACAACGCCAAGGAAGCAAG
*
13283023 ATTCGCCG
193 ATTCACCG
13283031 TTGTAGCTT
1 TTGTAGCTT
13283040 TAATCTAATT
Statistics
Matches: 180, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
199 3 0.02
200 175 0.97
201 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (200 bp):
TTGTAGCTTCAATTTGTTCCACTACACCGCCAGGGAAGTAAGATTCGTCGTTGTAGGTTCAACCT
TTTTAACTACAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAAGCTGTTCCACTGCACCAC
CAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCTCTCTAACTACAACGCCAAGGAAGCAAGATT
CACCG
Found at i:13283033 original size:100 final size:100
Alignment explanation
Indices: 13282631--13283153 Score: 451
Period size: 100 Copynumber: 5.2 Consensus size: 100
13282621 AGATTCGTTA
* * * * *** *
13282631 TTGTAGCTTCAATTTGTTCCATTACACCGTCAGGGAAGTAAGATTCGTTGTTGTAGG-TTCAACC
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGT-GGCTTCAATC
* * * * *
13282695 TTTTTAACTACAATGTCGGGGAAGCAAGATTCACTG
65 TTTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
* * *
13282731 TTGTAGCTTCAATCTGTTCCACTGTACCACCAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
* * * ***
13282796 TTTTAATTACAATGTTGGGGAAGCAAGATTCACCG
66 TTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
* **
13282831 TTGTAGCTTCAATTTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
* * * * *** *
13282896 TTTTAATTGCAATGTTGGGGAAGCAAGATTCATCG
66 TTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
* **
13282931 TTGTAGCTTCAAGCTGTTCCACTGCACCGCCAGGGAAGTAAGATTTGCCGTTGTGGCTTCAATCT
1 TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
* * * * * *
13282996 GCTCT-ACTGCACCGCCAAGGAAGGAAGATTCGCCG
66 -TTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
* * * * ** ** * *
13283031 TTGTAGCTTTAATCTAATT-AATTGCAATGTTAGGGAAGTAAGATTCACTGTTGTAGCTTCAATC
1 TTGTAGCTTCAATCT-GTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATC
* * * *
13283095 TGTTC-CACTACACCGCCAGGGAAGTAAGATTCGCCG
65 T-TTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
* * *
13283131 TTGTAGTTTTAATCTATTCCACT
1 TTGTAGCTTCAATCTGTTCCACT
13283154 ATAACACTAA
Statistics
Matches: 360, Mismatches: 58, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
99 5 0.01
100 351 0.98
101 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (100 bp):
TTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
TTCTAACTACAACGCCAGGGAAGCAAGATTCACCG
Found at i:13283154 original size:50 final size:50
Alignment explanation
Indices: 13282584--13283153 Score: 404
Period size: 50 Copynumber: 11.4 Consensus size: 50
13282574 CAGTAATTTA
* * ** * ***
13282584 TAGCTTCAATCTGCTCCACTGCAACTTCAGGAAAGTAAGATTCGTTATTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * * * **
13282634 TAGCTTCAATTTGTTCCATTACACCGTCAGGGAAGTAAGATTCGTTGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * * ** * ** * * * * *
13282684 TAGGTTCAACCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACTGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * * *
13282734 TAGCTTCAATCTGTTCCACTGTACCACCAGAGAAGTAAGATTCACCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * ** * * ** *** * *
13282784 TGGCTTCAATCTTTTTAATTACAATGTTGGGGAAGCAAGATTCACCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* *
13282834 TAGCTTCAATTTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * ** * ** *** * **
13282884 TGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAGCAAGATTCATCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* *
13282934 TAGCTTCAAGCTGTTCCACTGCACCGCCAGGGAAGTAAGATTTGCCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * * * *
13282984 TGGCTTCAATCTGCTCTACTGCACCGCCAAGGAAGGAAGATTCGCCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * * * ** ** * *
13283034 TAGCTTTAATCTAATT-AATTGCAATGTTAGGGAAGTAAGATTCACTGTTG
1 TAGCTTCAATCT-GTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
*
13283084 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTG
1 TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
* * *
13283134 TAGTTTTAATCTATTCCACT
1 TAGCTTCAATCTGTTCCACT
13283154 ATAACACTAA
Statistics
Matches: 389, Mismatches: 129, Indels: 4
0.75 0.25 0.01
Matches are distributed among these distances:
49 2 0.01
50 386 0.99
51 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
TAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTG
Found at i:13283514 original size:88 final size:88
Alignment explanation
Indices: 13283233--13283728 Score: 667
Period size: 88 Copynumber: 5.7 Consensus size: 88
13283223 ACGTCTTCTG
* *
13283233 TCTTAACGCTAGGGAGATAAGATTCGCTACTTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
1 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
* *
13283298 AAAA-AAGACTCGCTGTCTTC-A
66 AAAAGAAGACTCGTTATCTTCGA
* * * * *
13283319 GTCTTAACGCCAGGGAGATAAAATTCACTGCCTTCAGCTTTAATCTGCTCCACTACAACGCCAGG
1 -TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGG
* * *
13283384 G-AAAGAAGACTCATTGTCTTCGG
65 GAAAAGAAGACTCGTTATCTTCGA
* * * * * * *
13283407 TCTTAACGCTAAGGAGATAAGATTCACTGCCTTCAGTTTTAATCTACTCCGTTAAAAC-ATCAGG
1 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCT-AGG
13283471 GAAAAGAAGACTCGTTATCTTCGA
65 GAAAAGAAGACTCGTTATCTTCGA
* * *
13283495 TCTTAATGCCAGGGAGATAAGATTCGCTGTCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
1 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
* *
13283560 AAAAGAATACTCGTTCTCTTCGA
66 AAAAGAAGACTCGTTATCTTCGA
* * *
13283583 TCTTAATGCTAGGGAGATAAGATTCGCTGCCTTCAACTTTAATCTGCTCCGCTACAACACTAGGG
1 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
* *
13283648 AAAAGAATACTCGTTATCTTCGG
66 AAAAGAAGACTCGTTATCTTCGA
* *
13283671 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATTTGCCCCGCTACAAC
1 TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAAC
13283729 TCCAAGAAAA
Statistics
Matches: 359, Mismatches: 45, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
86 3 0.01
87 126 0.35
88 229 0.64
89 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (88 bp):
TCTTAACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTACAACGCTAGGG
AAAAGAAGACTCGTTATCTTCGA
Found at i:13284826 original size:16 final size:16
Alignment explanation
Indices: 13284807--13284840 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
13284797 TTTTTCGTTC
13284807 TTCTTTTC-TTCTCTTT
1 TTCTTTTCATT-TCTTT
13284823 TTCTTTTCATTTCTTT
1 TTCTTTTCATTTCTTT
13284839 TT
1 TT
13284841 TCAAGTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTCTTTTCATTTCTTT
Found at i:13289511 original size:21 final size:22
Alignment explanation
Indices: 13289474--13289539 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 22
13289464 AAAATATAAA
13289474 ATATAAAAATATATATATGTAC
1 ATATAAAAATATATATATGTAC
*
13289496 ATATAAGAAATTTATATGTATGTGA-
1 ATATAA-AAA--TATATATATGT-AC
*
13289521 ATAAAAGAAATATATATAT
1 ATATAA-AAATATATATAT
13289540 CAATATACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 6 0.16
23 11 0.30
25 19 0.51
26 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (22 bp):
ATATAAAAATATATATATGTAC
Found at i:13289517 original size:25 final size:25
Alignment explanation
Indices: 13289482--13289539 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
13289472 AAATATAAAA
*
13289482 ATATATATATGT-ACATATAAGAAAT
1 ATATATATATGTGA-ATAAAAGAAAT
* *
13289507 TTATATGTATGTGAATAAAAGAAAT
1 ATATATATATGTGAATAAAAGAAAT
13289532 ATATATAT
1 ATATATAT
13289540 CAATATACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (25 bp):
ATATATATATGTGAATAAAAGAAAT
Found at i:13293457 original size:19 final size:20
Alignment explanation
Indices: 13293412--13293462 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
13293402 AATTACAAAA
* *
13293412 AAAAATTCAATATAATTTTC
1 AAAAATTCAAAACAATTTTC
13293432 AAAAATTCAAAACAATTTT-
1 AAAAATTCAAAACAATTTTC
*
13293451 TAAAATTCAAAA
1 AAAAATTCAAAA
13293463 TATTTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAACAATTTTC
Found at i:13293474 original size:19 final size:19
Alignment explanation
Indices: 13293410--13293474 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
13293400 AAAATTACAA
*
13293410 AAAAAAATTCAATATAATTT
1 AAAAAAATTCAAAAT-ATTT
** *
13293430 TCAAAAATTCAAAACAATTT
1 AAAAAAATTCAAAA-TATTT
**
13293450 -TTAAAATTCAAAATATTT
1 AAAAAAATTCAAAATATTT
13293468 AAAAAAA
1 AAAAAAA
13293475 ATTTCCAAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
18 4 0.12
19 15 0.44
20 15 0.44
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAAAATTCAAAATATTT
Found at i:13293534 original size:20 final size:19
Alignment explanation
Indices: 13293511--13293549 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
13293501 AAATCACAAC
13293511 AAATTCTAAA-AAATATAAAA
1 AAATT-TAAAGAAAT-TAAAA
13293531 AAATTTAAAGAAATTAAAA
1 AAATTTAAAGAAATTAAAA
13293550 TTTTTCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (19 bp):
AAATTTAAAGAAATTAAAA
Found at i:13298867 original size:11 final size:11
Alignment explanation
Indices: 13298851--13298881 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
13298841 TGAAGAAGTA
13298851 ACCCTCCAAGG
1 ACCCTCCAAGG
13298862 ACCCTCCAAGG
1 ACCCTCCAAGG
13298873 ACCCTCCAA
1 ACCCTCCAA
13298882 ATGCATGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.48, G:0.13, T:0.10
Consensus pattern (11 bp):
ACCCTCCAAGG
Found at i:13301074 original size:16 final size:17
Alignment explanation
Indices: 13301055--13301088 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
13301045 TTACGTTAAA
*
13301055 TTTAAATT-TTTTATTT
1 TTTAAATTAATTTATTT
13301071 TTTAAATTAATTTATTT
1 TTTAAATTAATTTATTT
13301088 T
1 T
13301089 GTCGATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAAATTAATTTATTT
Found at i:13314969 original size:17 final size:16
Alignment explanation
Indices: 13314927--13314960 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
13314917 TATATATTTT
13314927 TATTTTTAATCAAATA
1 TATTTTTAATCAAATA
13314943 TACTTTTTAATCAAATA
1 TA-TTTTTAATCAAATA
13314960 T
1 T
13314961 TTATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTTTAATCAAATA
Found at i:13315394 original size:89 final size:89
Alignment explanation
Indices: 13315243--13315422 Score: 333
Period size: 89 Copynumber: 2.0 Consensus size: 89
13315233 AATACATATA
* *
13315243 TTATAATCATTATATTGAAATTTATAAAAAGAAATTTAACAAAAATGGAGAGAATGGAGAACCTG
1 TTATAATCATTATATTGAAATTTATAAAAAGAAATTCAACAAAAATGGAGAGAATAGAGAACCTG
13315308 ATTTCCTCTGAAATATTCGATCAT
66 ATTTCCTCTGAAATATTCGATCAT
13315332 TTATAATCATTATATTGAAATTTATAAAAAGAAATTCAACAAAAATGGAGAGAATAGAGAACCTG
1 TTATAATCATTATATTGAAATTTATAAAAAGAAATTCAACAAAAATGGAGAGAATAGAGAACCTG
*
13315397 ATTTCCTCTGAAGTATTCGATCAT
66 ATTTCCTCTGAAATATTCGATCAT
13315421 TT
1 TT
13315423 GCAAAGAAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (89 bp):
TTATAATCATTATATTGAAATTTATAAAAAGAAATTCAACAAAAATGGAGAGAATAGAGAACCTG
ATTTCCTCTGAAATATTCGATCAT
Found at i:13322940 original size:24 final size:22
Alignment explanation
Indices: 13322880--13322940 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
13322870 ATATTTTTGC
13322880 TATTA-ATTAATTTATTATTAT
1 TATTATATTAATTTATTATTAT
* *
13322901 TTTTATATTACAATTTATTATTGT
1 TATTATATT--AATTTATTATTAT
13322925 TATTACTATTATATTT
1 TATTA-TATTA-ATTT
13322941 GATAATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 1 0.03
24 20 0.62
25 4 0.12
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTATATTAATTTATTATTAT
Found at i:13323077 original size:17 final size:18
Alignment explanation
Indices: 13323045--13323078 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13323035 ATGTTATTTA
13323045 ATTTTAAACTATATATAT
1 ATTTTAAACTATATATAT
*
13323063 ATTTTATAC-ATATATA
1 ATTTTAAACTATATATA
13323079 ACTTCATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTTAAACTATATATAT
Found at i:13327513 original size:17 final size:17
Alignment explanation
Indices: 13327491--13327527 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13327481 ATCAAAAATG
**
13327491 AAAAAAAGAGGAAGAAA
1 AAAAAAAGAAAAAGAAA
13327508 AAAAAAAGAAAAAGAAA
1 AAAAAAAGAAAAAGAAA
13327525 AAA
1 AAA
13327528 GAGAGGTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAGAAA
Found at i:13329785 original size:44 final size:45
Alignment explanation
Indices: 13329677--13330402 Score: 181
Period size: 44 Copynumber: 16.7 Consensus size: 45
13329667 TCGCTAGTCT
* * * * ** *
13329677 TATCCCCCTGAAGTTGCAGTGGGGCAGACTAAAGATGGTGAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
*
13329722 TATCTCCCTG-AGTTTGTAGTGGAGCAGATTAAAGCCAGT-AATCC
1 TATCTCCCTGAAG-TTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * * *
13329766 TATCTCCTTGAAGTTGTAGTGGAG-GGATTAAA-ACAAT-AGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGA-ATCC
* * * *** ** *
13329809 TATCTCTCTGAAGTTGCT-GTAGAGTAGATCGTA-TTAG-G--TCT
1 TATCTCCCTGAAGTTG-TAGTGGAGCAGATTAAAGACAGTGAATCC
* * ** *** ** *
13329850 TATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGA-AGCAAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* ** ** ** *
13329894 TATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAGATGGCAAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * * *
13329938 TATCTCGCTGAGGTTGCAGTGGAGCAGATTGAAGAC-GAT-AATCC
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAG-TGAATCC
** * *
13329982 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAA-ACAAT-AGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGA-ATCC
* * * * * *** * *
13330026 TATCTCTCTAAAGTTGCAGTAGAGTAGATCGCA-TCAG-G--TCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * ** *
13330067 TATCTCCCT-AAGCTGTAGTGGAGCAGATTGAAGATGGTGAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * * * *
13330111 TATCTCTCTG-AGTTTGTAGGGGAGCATATTGAAGCCAGT-AATCC
1 TATCTCCCTGAAG-TTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * * * *
13330155 TATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATA-A-T-AGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATT-AAAGACAGTGA-ATCC
* * * * * * *
13330199 TATCTCTCTGAATTTGTAGTAGTGCAGA-T---CACA-TCAAGTCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAA-TCC
* * ** * * * * * *
13330240 TATCTCCCTGAGGTTGCAACGGAGTAGACT-GAGAAAG-CAAGTCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAA-TCC
* * * * * ** *
13330284 TATCCCCCTAAAGTTGTAGTGGGGCAGACTGAAGATGGTGAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * *
13330329 TATCTCCCTG-AGTTTGCAGTGGAGCAGATTGAAGTCAGT-AATCC
1 TATCTCCCTGAAG-TTGTAGTGGAGCAGATTAAAGACAGTGAATCC
* * *
13330373 TATCTCCCTGAAGTGGCAGTGGAGCGGATT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATT
13330403 CAAATAATAG
Statistics
Matches: 513, Mismatches: 131, Indels: 75
0.71 0.18 0.10
Matches are distributed among these distances:
39 1 0.00
40 20 0.04
41 65 0.13
42 6 0.01
43 55 0.11
44 251 0.49
45 113 0.22
46 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGACAGTGAATCC
Found at i:13329952 original size:88 final size:89
Alignment explanation
Indices: 13329847--13330010 Score: 217
Period size: 88 Copynumber: 1.9 Consensus size: 89
13329837 TCGTATTAGG
*
13329847 TCTTATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGAAGCA-AATCTTATCTCCCT-AAG-TAG
1 TCTTATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGAAG-ATAATCCTATCTCCCTGAAGTTA-
*
13329909 TAGTGGAGCAGATCGAAGATGGCAAA
64 CAGTGGAGCAGATCGAAGATGGCAAA
* ** ** *
13329935 TCTTATCTCGCTGAGGTTGCAGTGGAGCAGATTGAAGACGATAATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGAAGATAATCCTATCTCCCTGAAGTTACA
13330000 GTGGAGCAGAT
66 GTGGAGCAGAT
13330011 TAAAACAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
87 1 0.02
88 47 0.72
89 15 0.23
90 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (89 bp):
TCTTATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGAAGATAATCCTATCTCCCTGAAGTTACA
GTGGAGCAGATCGAAGATGGCAAA
Found at i:13329995 original size:173 final size:172
Alignment explanation
Indices: 13329847--13330204 Score: 414
Period size: 173 Copynumber: 2.1 Consensus size: 172
13329837 TCGTATTAGG
* *
13329847 TCTTATCTCCCTGAGGTTGCAGCAGAGCAGACCGAAGAAGCAAATCTTATCTCCCTAAG-TAGTA
1 TCTTATCTCCCTAAAGTTGCAGCAGAGCAGACC---GAAGCAAATCTTATCTCCCTAAGCT-GTA
* *
13329911 GTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCAGTGGAGCAGATTGAAGAC-G
62 GTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGCCAG
* *
13329975 ATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGA
127 -TAATCCTATCTCACTGAAGTTACAGTAGAGCAGATT-AAACAATAGA
* * * * * * **
13330023 TCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGCTGTAGTGG
1 TCTTATCTCCCTAAAGTTGCAGCAGAGCAGACCGAAGCAAATCTTATCTCCCTAAGCTGTAGTGG
* ** * * * *
13330088 AGCAGATTGAAGATGGTGAATCTTATCTCTCTGAGTTTGTAGGGGAGCATATTGAAGCCAGTAAT
66 AGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGCCAGTAAT
** * *
13330153 CCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAATAGA
131 CCTATCTCACTGAAGTTACAGTAGAGCAGATT-AAACAATAGA
13330196 TCTTATCTC
1 TCTTATCTC
13330205 TCTGAATTTG
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
173 127 0.81
174 2 0.01
176 27 0.17
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (172 bp):
TCTTATCTCCCTAAAGTTGCAGCAGAGCAGACCGAAGCAAATCTTATCTCCCTAAGCTGTAGTGG
AGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGCCAGTAAT
CCTATCTCACTGAAGTTACAGTAGAGCAGATTAAACAATAGA
Found at i:13330176 original size:217 final size:218
Alignment explanation
Indices: 13329739--13330445 Score: 676
Period size: 217 Copynumber: 3.3 Consensus size: 218
13329729 CTGAGTTTGT
* * * *
13329739 AGTGGAGCAGATTAAAGCCAGTAATCCTATCTCCTTGAAGTTGTAGTGGAG-GGATTAAAACAAT
1 AGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACAAT
* * * * * *
13329803 AGATCTTATCTCTCTGAAGTTGCTGTAGAGTAGATCGTATTAGGTCTTATCTCCCTGAGGTTGCA
66 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTAAAGTTGTA
** * * ** * * * **
13329868 GCAGAGCAGACCGAAGA-AGCAAATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGG
131 GTGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGTAGTGGAGCAGATTGAAGACAG
* * * * *
13329931 CAAATCTTATCTCGCTGAGGTTGC
196 -TAATCCTATCTCACTGAAGTGGC
* * **
13329955 AGTGGAGCAGATTGAAGACGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAT
1 AGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACAAT
* * *
13330020 AGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCT-AAGCTGTA
66 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTAAAGTTGTA
* * * * *
13330084 GTGGAGCAGATTGAAGATGGTGAATCTTATCTCTCTGAGTTTGTAGGGGAGCATATTGAAGCCAG
131 GTGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGTAGTGGAGCAGATTGAAGACAG
13330149 TAATCCTATCTCACTGAAGTGGC
196 TAATCCTATCTCACTGAAGTGGC
* * * * * * * * * *
13330172 AGTGGAGCAGATTCAA-ATAATAGATCTTATCTCTCTGAATTTGTAGTAGTGCAGATCACATC-A
1 AGTGGAGCAGATTAAAGACAATA-ATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACAA
* * *** * * * *
13330235 -AG-TCTTATCTCCCTGAGGTTGCAACGGAGTAGACTGAGAAAGCAAGTCTTATCCCCCTAAAGT
65 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T-CG-AATCAGGTCTTATCTCCCTAAAGT
* *
13330298 TGTAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGCAGATTGAAG
127 TGTAGTGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGTAGTGGAGCAGATTGAAG
* *
13330363 TCAGTAATCCTATCTCCCTGAAGTGGC
192 ACAGTAATCCTATCTCACTGAAGTGGC
* * * * * * * *
13330390 AGTGGAGCGGATTCAA-ATAATAGATCTTGTCTCTCTGAAGTTGCAGTAGAGCAGAT
1 AGTGGAGCAGATTAAAGACAATA-ATCCTATCTCCCTGAAGTTGTAGTGGAGCAGAT
13330446 CACATCAGGT
Statistics
Matches: 409, Mismatches: 74, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
214 25 0.06
215 3 0.01
216 68 0.17
217 157 0.38
218 156 0.38
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (218 bp):
AGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACAAT
AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTAAAGTTGTA
GTGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGTAGTGGAGCAGATTGAAGACAG
TAATCCTATCTCACTGAAGTGGC
Found at i:13330205 original size:173 final size:173
Alignment explanation
Indices: 13329891--13330248 Score: 495
Period size: 173 Copynumber: 2.1 Consensus size: 173
13329881 AAGAAGCAAA
13329891 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCA
* * *
13329956 GTGGAGCAGATTGAAGACGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATA
66 GGGGAGCAGATTGAAGACGATAATCCTATCTCACTGAAGTGACAGTGGAGCAGATTAAAACAATA
* * *
13330021 GATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCATCAGG
131 GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAG
* ** * * *
13330064 TCTTATCTCCCTAAGCT-GTAGTGGAGCAGATTGAAGATGGTGAATCTTATCTCTCTGAGTTTGT
1 TCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGC
* * * * *
13330128 AGGGGAGCATATTGAAG-CCAGTAATCCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAA
65 AGGGGAGCAGATTGAAGACGA-TAATCCTATCTCACTGAAGTGACAGTGGAGCAGATTAAAACAA
* * * *
13330192 TAGATCTTATCTCTCTGAATTTGTAGTAGTGCAGATCACATCAAG
129 TAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAG
13330237 TCTTATCTCCCT
1 TCTTATCTCCCT
13330249 GAGGTTGCAA
Statistics
Matches: 162, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
172 2 0.01
173 159 0.98
174 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (173 bp):
TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCGCTGAGGTTGCA
GGGGAGCAGATTGAAGACGATAATCCTATCTCACTGAAGTGACAGTGGAGCAGATTAAAACAATA
GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAG
Found at i:13330217 original size:88 final size:87
Alignment explanation
Indices: 13329934--13330210 Score: 244
Period size: 88 Copynumber: 3.2 Consensus size: 87
13329924 AAGATGGCAA
* * *
13329934 ATCTTATCTCGCTGAGGTTGCAGTGGAGCAGATTGAAGAC-GATAATCCTATCTCCCTGAAGTTA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGACAG-TAATCCTATCTCCCTGAAG-TG
*
13329998 CAGTGGAGCAGATTAAAACAATAG
64 CAGTGGAGCAGATTAAAATAATAG
* * * * * * * * *
13330022 ATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCA-TCAG--GTCTTATCTCCCT-AAGCTGT
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGACAGTAATCCTATCTCCCTGAAG-TGC
* **
13330083 AGTGGAGCAGATTGAAGATGGT-G
65 AGTGGAGCAGATT-AAAATAATAG
* * * * *
13330106 AATCTTATCTCTCTG-AGTTTGTAGGGGAGCATATTGAAGCCAGTAATCCTATCTCACTGAAGTG
1 -ATCTTATCTCTCTGAAG-TTGCAGTGGAGCAGATTGAAGACAGTAATCCTATCTCCCTGAAGT-
*
13330170 GCAGTGGAGCAGATTCAAATAATAG
63 GCAGTGGAGCAGATTAAAATAATAG
13330195 ATCTTATCTCTCTGAA
1 ATCTTATCTCTCTGAA
13330211 TTTGTAGTAG
Statistics
Matches: 144, Mismatches: 34, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
84 20 0.14
85 41 0.28
86 3 0.02
87 1 0.01
88 60 0.42
89 19 0.13
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (87 bp):
ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGACAGTAATCCTATCTCCCTGAAGTGCA
GTGGAGCAGATTAAAATAATAG
Found at i:13330287 original size:173 final size:172
Alignment explanation
Indices: 13329933--13330287 Score: 408
Period size: 173 Copynumber: 2.1 Consensus size: 172
13329923 GAAGATGGCA
* * *
13329933 AATCTTATCTCGCTGAGGTTGCAGTGGAGCAGATTGAAGACGATAATCCTATCTCCCTGAAGTTA
1 AATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGACGATAATCCTATCTCACTGAAGTGA
* * *
13329998 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCATCAG
66 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAA
* ** * ** *
13330063 GTCTTATCTCCCTAAGCTGTAGTGGAGCAGATTGAAGATGGTG
131 GTCTTATCTCCCTAAGCTGCAACGGAGCAGACTGAAGAAAG-C
* * * * *
13330106 AATCTTATCTCTCTGAGTTTGTAGGGGAGCATATTGAAG-CCAGTAATCCTATCTCACTGAAGTG
1 AATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGACGA-TAATCCTATCTCACTGAAGTG
* * * * * * *
13330170 GCAGTGGAGCAGATTCAAATAATAGATCTTATCTCTCTGAATTTGTAGTAGTGCAGATCACATCA
65 ACAGTGGAGCAGATTAAAACAATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCA
* * *
13330235 AGTCTTATCTCCCTGAGGTTGCAACGGAGTAGACTG-AGAAAGC
130 AGTCTTATCTCCCT-AAGCTGCAACGGAGCAGACTGAAGAAAGC
13330278 AAGTCTTATC
1 AA-TCTTATC
13330288 CCCCTAAAGT
Statistics
Matches: 151, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
172 4 0.03
173 133 0.88
174 14 0.09
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (172 bp):
AATCTTATCTCGCTGAGGTTGCAGGGGAGCAGATTGAAGACGATAATCCTATCTCACTGAAGTGA
CAGTGGAGCAGATTAAAACAATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAA
GTCTTATCTCCCTAAGCTGCAACGGAGCAGACTGAAGAAAGC
Found at i:13330333 original size:218 final size:217
Alignment explanation
Indices: 13330063--13330544 Score: 741
Period size: 218 Copynumber: 2.2 Consensus size: 217
13330053 ATCGCATCAG
* * * * * *
13330063 GTCTTATCTCCCTAAGCTGTAGTGGAGCAGATTGAAGATGGTGAATCTTATCTCTCTGAGTTTGT
1 GTCTTATCCCCCTAAGTTGTAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGC
*
13330128 AGGGGAGCATATTGAAGCCAGTAATCCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAAT
66 AGGGGAGCAGATTGAAGCCAGTAATCCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAAT
* * *
13330193 AGATCTTATCTCTCTGAATTTGTAGTAGTGCAGATCACATCAAGTCTTATCTCCCTGAGGTTGCA
131 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAGGTTGCA
*
13330258 ACGGAG-TAGACTGAGAAAGCAA
196 ACGAAGCT-GACTGAGAAAGCAA
13330280 GTCTTATCCCCCTAAAGTTGTAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTG
1 GTCTTATCCCCCT-AAGTTGTAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTG
* * * *
13330345 CAGTGGAGCAGATTGAAGTCAGTAATCCTATCTCCCTGAAGTGGCAGTGGAGCGGATTCAAATAA
65 CAGGGGAGCAGATTGAAGCCAGTAATCCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAA
* *
13330410 TAGATCTTGTCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAGGTCTTATCTCCCTGAGGTTGC
130 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAGGTTGC
* *
13330475 AGCGAAGCTGACTGAGGAAGCAA
195 AACGAAGCTGACTGAGAAAGCAA
* *
13330498 GTCTTATCCCCCTGAAGTTGCAGTGGGGAAGACTGAAGATGGTGAAT
1 GTCTTATCCCCCT-AAGTTGTAGTGGGGCAGACTGAAGATGGTGAAT
13330545 TGAAGCCAGT
Statistics
Matches: 241, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
217 12 0.05
218 228 0.95
219 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (217 bp):
GTCTTATCCCCCTAAGTTGTAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGC
AGGGGAGCAGATTGAAGCCAGTAATCCTATCTCACTGAAGTGGCAGTGGAGCAGATTCAAATAAT
AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAGGTTGCA
ACGAAGCTGACTGAGAAAGCAA
Found at i:13330623 original size:44 final size:41
Alignment explanation
Indices: 13330560--13330654 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 41
13330550 CCAGTAATCC
*
13330560 TATCTCCCTGAAGTGGCAGTAGAGCGGAATCAAATAATAGATCT
1 TATCTCCCTGAAGTGGCAGTAGAGCAG-ATCAAATAA-AG-TCT
* * *
13330604 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCT
1 TATCTCCCTGAAGTGGCAGTAGAGCAGATCAAATAAAGTCT
13330645 TATCTCCCTG
1 TATCTCCCTG
13330655 GGTTTGCAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
41 13 0.28
42 2 0.04
43 7 0.15
44 25 0.53
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
TATCTCCCTGAAGTGGCAGTAGAGCAGATCAAATAAAGTCT
Found at i:13330769 original size:89 final size:89
Alignment explanation
Indices: 13330648--13330939 Score: 356
Period size: 89 Copynumber: 3.3 Consensus size: 89
13330638 CAAGTCTTAT
* * * *
13330648 CTCCCTGGGTTTGCAGTGGAGCAGACTAAAGAAAGCAGATCTTGCCTTCCTATACTGACAGCGAA
1 CTCCCTGGGCTTGCAGCGGAGCAGACTGAAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAA
13330713 ACAGATCGAAGACACCAGCCTTGC
66 ACAGATCGAAGACACCAGCCTTGC
* * * *
13330737 CTCCTTGGGCTTGCAGTGGAGCAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACTGATAGCGAA
1 CTCCCTGGGCTTGCAGCGGAGCAGACTGAAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAA
* *
13330802 GCAGATCGAAGATACCAGCCTTGC
66 ACAGATCGAAGACACCAGCCTTGC
* * * * *
13330826 CTCCATGGG-TTGCCAGCAGAGTAGACTGAATATAA-CAGATTTTGCCTTCCTGTACTGACAGCG
1 CTCCCTGGGCTTG-CAGCGGAGCAGACTGAAGA-AAGCAGATCTTGCCTTCCTGTACTGACAGCG
* * * *
13330889 AAACAGATCAAAAACACCAACCTTGT
64 AAACAGATCGAAGACACCAGCCTTGC
*
13330915 GTCCCT-GGCGTTGCAGCGGAGCAGA
1 CTCCCTGGGC-TTGCAGCGGAGCAGA
13330940 TTAAAGCTGA
Statistics
Matches: 173, Mismatches: 26, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
88 5 0.03
89 163 0.94
90 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (89 bp):
CTCCCTGGGCTTGCAGCGGAGCAGACTGAAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAA
ACAGATCGAAGACACCAGCCTTGC
Found at i:13330813 original size:45 final size:45
Alignment explanation
Indices: 13330676--13330813 Score: 122
Period size: 45 Copynumber: 3.1 Consensus size: 45
13330666 GAGCAGACTA
* *
13330676 AAGAAAGCAGATCTTGCCTTCCTATACTGACAGCGAAACAGATCG
1 AAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCG
* * * ** * *
13330721 AAGACACCAG-CCTTGCC-TCCTTGGGCTTG-CAGTGGAGCAGA-CTG
1 AAGAAAGCAGATCTTGCCTTCC-TGTAC-TGACAGCGAAGCAGATC-G
* *
13330765 AAGAAAGTAGATCTTGCCTTCCTGTACTGATAGCGAAGCAGATCG
1 AAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCG
13330810 AAGA
1 AAGA
13330814 TACCAGCCTT
Statistics
Matches: 68, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
43 4 0.06
44 27 0.40
45 33 0.49
46 4 0.06
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (45 bp):
AAGAAAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCG
Found at i:13340364 original size:17 final size:17
Alignment explanation
Indices: 13340342--13340377 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
13340332 TAGAATTCAG
*
13340342 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
13340359 TTGAGAAAATTAATTAA
1 TTGAGAAAATTAATTAA
13340376 TT
1 TT
13340378 ATTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:13342421 original size:27 final size:27
Alignment explanation
Indices: 13342391--13342568 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13342381 ATATTGAGCC
* * * *
13342391 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
13342418 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13342445 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
13342473 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
13342500 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
13342527 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13342554 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13342569 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:13342530 original size:82 final size:81
Alignment explanation
Indices: 13342412--13342567 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13342402 TGCTATATAA
* *
13342412 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
13342477 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
13342494 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
13342558 CACTTAGTGC
65 CACTTAGTGC
13342568 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13343053 original size:102 final size:102
Alignment explanation
Indices: 13342877--13343076 Score: 400
Period size: 102 Copynumber: 2.0 Consensus size: 102
13342867 CGGATCTAGT
13342877 TCAACAATTTATGCAATTAAAACACGAAAATAAATTTTTGGCTCGGTAATGTGGTCTCGAAACCA
1 TCAACAATTTATGCAATTAAAACACGAAAATAAATTTTTGGCTCGGTAATGTGGTCTCGAAACCA
13342942 CATTCCGACCAGGGTCTAATTTGGGTTGTCACAACTC
66 CATTCCGACCAGGGTCTAATTTGGGTTGTCACAACTC
13342979 TCAACAATTTATGCAATTAAAACACGAAAATAAATTTTTGGCTCGGTAATGTGGTCTCGAAACCA
1 TCAACAATTTATGCAATTAAAACACGAAAATAAATTTTTGGCTCGGTAATGTGGTCTCGAAACCA
13343044 CATTCCGACCAGGGTCTAATTTGGGTTGTCACA
66 CATTCCGACCAGGGTCTAATTTGGGTTGTCACA
13343077 GTTTTCGAAC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (102 bp):
TCAACAATTTATGCAATTAAAACACGAAAATAAATTTTTGGCTCGGTAATGTGGTCTCGAAACCA
CATTCCGACCAGGGTCTAATTTGGGTTGTCACAACTC
Found at i:13345971 original size:41 final size:41
Alignment explanation
Indices: 13345912--13346063 Score: 207
Period size: 41 Copynumber: 3.7 Consensus size: 41
13345902 AATAGAGTGT
* *
13345912 AAATAGAGGCACGCATGTGCTATTCAGGGGTACCAAAGTAC
1 AAATAGAGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* *
13345953 AAATAGAGGCATGTATGTGCAATTCAGTGGTACCAAAGTAC
1 AAATAGAGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* * *
13345994 AAATAGGGGCACGTATGTGGC-ATTCAAGGGTACCGAAGTAC
1 AAATAGAGGCACGTATGT-GCAATTCAGGGGTACCAAAGTAC
* *
13346035 AAACAGAGGCACGTATGTGCAATTTAGGG
1 AAATAGAGGCACGTATGTGCAATTCAGGG
13346064 TATAATTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
40 2 0.02
41 92 0.96
42 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (41 bp):
AAATAGAGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
Done.