Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 45 of 161
Found at i:13681086 original size:18 final size:17
Alignment explanation
Indices: 13681058--13681092 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13681048 ATTATTAAGA
*
13681058 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13681075 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13681093 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13681175 original size:157 final size:157
Alignment explanation
Indices: 13680889--13681205 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
13680879 ATAAGAATAT
* *
13680889 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
*
13680954 AAATATGATTAAAATATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
13681019 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
13681046 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATTTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
* *
13681111 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAATAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
13681176 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
13681203 TAA
1 TAA
13681206 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 152 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:13686511 original size:205 final size:205
Alignment explanation
Indices: 13686159--13686571 Score: 790
Period size: 205 Copynumber: 2.0 Consensus size: 205
13686149 AGTTTCTTTT
13686159 CAACCTCAAAGAGGATTTAGACAAGAAAACCCGTTAAGTCCTTTTTTATTTCTAATTTGTAGTGA
1 CAACCTCAAAGAGGATTTAGACAAGAAAACCCGTTAAGTCCTTTTTTATTTCTAATTTGTAGTGA
13686224 AGGTTTATCCACCCTCATGCGTCTTTGCTTTGGGGAAGAGTTGTTAAAAGGTGTAAAAGCAAGCA
66 AGGTTTATCCACCCTCATGCGTCTTTGCTTTGGGGAAGAGTTGTTAAAAGGTGTAAAAGCAAGCA
*
13686289 GACAAGGTCCCCAAATTTCCCACTTACTTTTTGCTGATGACTGTCCTTTTCGGGGAAACAAGTGA
131 GACAAGATCCCCAAATTTCCCACTTACTTTTTGCTGATGACTGTCCTTTTCGGGGAAACAAGTGA
13686354 GCGAGGTCCC
196 GCGAGGTCCC
*
13686364 CAACCTCAAAGAGGATTTAGACAAGAAAGCCCGTTAAGTCCTTTTTTATTTCTAATTTGTAGTGA
1 CAACCTCAAAGAGGATTTAGACAAGAAAACCCGTTAAGTCCTTTTTTATTTCTAATTTGTAGTGA
* *
13686429 AGGTTTATCCACCCTCATGCGTCTTTGCTTTGGGGAAGGGTTGTTAAAAGGTGTGAAAGCAAGCA
66 AGGTTTATCCACCCTCATGCGTCTTTGCTTTGGGGAAGAGTTGTTAAAAGGTGTAAAAGCAAGCA
13686494 GACAAGATCCCCAAATTTCCCACTTACTTTTTGCTGATGACTGTCCTTTTCGGGGAAACAAGTGA
131 GACAAGATCCCCAAATTTCCCACTTACTTTTTGCTGATGACTGTCCTTTTCGGGGAAACAAGTGA
13686559 GCGAGGTCCC
196 GCGAGGTCCC
13686569 CAA
1 CAA
13686572 ATTTTGAAGG
Statistics
Matches: 204, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
205 204 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (205 bp):
CAACCTCAAAGAGGATTTAGACAAGAAAACCCGTTAAGTCCTTTTTTATTTCTAATTTGTAGTGA
AGGTTTATCCACCCTCATGCGTCTTTGCTTTGGGGAAGAGTTGTTAAAAGGTGTAAAAGCAAGCA
GACAAGATCCCCAAATTTCCCACTTACTTTTTGCTGATGACTGTCCTTTTCGGGGAAACAAGTGA
GCGAGGTCCC
Found at i:13687510 original size:18 final size:18
Alignment explanation
Indices: 13687487--13687620 Score: 72
Period size: 18 Copynumber: 7.9 Consensus size: 18
13687477 TTATTATTAA
13687487 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
13687505 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
* *
13687522 AAATGAATTTACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
13687540 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* * *
13687556 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
13687575 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
*
13687587 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
13687605 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
13687621 TTCTTAGTAT
Statistics
Matches: 85, Mismatches: 20, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
12 1 0.01
13 5 0.06
14 2 0.02
15 3 0.04
16 8 0.09
17 19 0.22
18 42 0.49
19 5 0.06
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:13694946 original size:5 final size:5
Alignment explanation
Indices: 13694936--13694969 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
13694926 TTTCTAAAAG
13694936 TAAAT TAAAT TAAA- -AAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
13694970 TTATTGTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
5 24 0.89
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:13694955 original size:13 final size:13
Alignment explanation
Indices: 13694937--13694962 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13694927 TTCTAAAAGT
13694937 AAATTAAATTAAA
1 AAATTAAATTAAA
13694950 AAATTAAATTAAA
1 AAATTAAATTAAA
13694963 TTAAATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATTAAATTAAA
Found at i:13694957 original size:18 final size:18
Alignment explanation
Indices: 13694931--13694967 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
13694921 CCCTTTTTCT
13694931 AAAAGTAAATTAAATTAA
1 AAAAGTAAATTAAATTAA
*
13694949 AAAATTAAATTAAATTAA
1 AAAAGTAAATTAAATTAA
13694967 A
1 A
13694968 TTTTATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
AAAAGTAAATTAAATTAA
Found at i:13699964 original size:15 final size:15
Alignment explanation
Indices: 13699941--13699987 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
13699931 TGGTAAAGAA
*
13699941 CATTGGAAAGCAGTT
1 CATTAGAAAGCAGTT
13699956 CATTAGAAAGCAGTT
1 CATTAGAAAGCAGTT
*
13699971 CATTAGAAAGTAGTT
1 CATTAGAAAGCAGTT
13699986 CA
1 CA
13699988 GTGGATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (15 bp):
CATTAGAAAGCAGTT
Found at i:13701886 original size:18 final size:19
Alignment explanation
Indices: 13701846--13701896 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
13701836 AATTATGAAC
* *
13701846 ATTTTATATATTTTTTTA-
1 ATTTTAAATATTTTTATAT
13701864 ATTTTAAATATTTTTATAT
1 ATTTTAAATATTTTTATAT
*
13701883 TTTTTAAATTATTT
1 ATTTTAAA-TATTT
13701897 GTCAATATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 16 0.57
19 7 0.25
20 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTTTAAATATTTTTATAT
Found at i:13702531 original size:16 final size:17
Alignment explanation
Indices: 13702490--13702523 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13702480 CAAACATAGC
13702490 CTAAAAATTTAATATGT
1 CTAAAAATTTAATATGT
13702507 CTAAAAATTTAATATGT
1 CTAAAAATTTAATATGT
13702524 TATGAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
CTAAAAATTTAATATGT
Found at i:13703971 original size:21 final size:22
Alignment explanation
Indices: 13703930--13703976 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
13703920 CCCTTCACAT
*
13703930 TTTTCTTTTCTTCTTTCTTTC-
1 TTTTATTTTCTTCTTTCTTTCA
*
13703951 TTTTATTTTTTTCTCTT-TTTCA
1 TTTTATTTTCTTCT-TTCTTTCA
13703973 TTTT
1 TTTT
13703977 TACTTGCTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTATTTTCTTCTTTCTTTCA
Found at i:13708215 original size:21 final size:22
Alignment explanation
Indices: 13708151--13708215 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
13708141 GGGTAGGAAA
*
13708151 TTGCATCTGAT-TCTAATCTATT
1 TTGCATCT-ATATCTAATCTGTT
*
13708173 TTGCATCTATATCTAATTTGTT
1 TTGCATCTATATCTAATCTGTT
13708195 TTGCATCT-TATCTGAA-CTGTT
1 TTGCATCTATATCT-AATCTGTT
13708216 ACAATAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 11 0.29
22 27 0.71
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.51
Consensus pattern (22 bp):
TTGCATCTATATCTAATCTGTT
Found at i:13711067 original size:30 final size:30
Alignment explanation
Indices: 13710988--13711189 Score: 134
Period size: 30 Copynumber: 6.8 Consensus size: 30
13710978 AACTGAAGTT
13710988 ATCCCTTTTCATAATAT-GATAG-TCGTCACC
1 ATCCCTTTTCATAAT-TCGATAGCT-GTCACC
* * * *
13711018 AACCCATTTCATTATTCGATGGCTGTCACC
1 ATCCCTTTTCATAATTCGATAGCTGTCACC
*
13711048 ATCCCTTTTCATAGA-TCGATAGCTG-AAGCC
1 ATCCCTTTTCATA-ATTCGATAGCTGTCA-CC
* * *
13711078 ATCCCTTTTCATAGTAT-GATAGCCG-AAGCC
1 ATCCCTTTTCATAAT-TCGATAGCTGTCA-CC
* * *
13711108 ATCCCTTTTCATAATTTGAT-GATCGTCACA
1 ATCCCTTTTCATAATTCGATAGCT-GTCACC
* * *
13711138 ATCCCTTTTCATAATTTGAT-GGTCGTCACT
1 ATCCCTTTTCATAATTCGATAGCT-GTCACC
*
13711168 ATCCCTTTTCAAAATT-GATAGC
1 ATCCCTTTTCATAATTCGATAGC
13711190 CCAAGCCATC
Statistics
Matches: 142, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
29 7 0.05
30 131 0.92
31 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAGCTGTCACC
Found at i:13711118 original size:90 final size:91
Alignment explanation
Indices: 13710988--13711221 Score: 225
Period size: 90 Copynumber: 2.6 Consensus size: 91
13710978 AACTGAAGTT
* * * * * *
13710988 ATCCCTTTTCATAATATGATAGTCGTCA-CCAACCCATTTCATTATTCGATGGCT-GTCACCATC
1 ATCCCTTTTCATAATATGATAGCCG-AAGCCATCCCTTTTCATTATTCGATGGATCGTCACAATC
13711051 CCTTTTCATAGA-TCGATAGCT-G-AAGCC
65 CCTTTTCATA-ATTCGAT-GCTCGTAA-CC
* * *
13711078 ATCCCTTTTCATAGTATGATAGCCGAAGCCATCCCTTTTCATAATTTGAT-GATCGTCACAATCC
1 ATCCCTTTTCATAATATGATAGCCGAAGCCATCCCTTTTCATTATTCGATGGATCGTCACAATCC
* * * *
13711142 CTTTTCATAATTTGATGGTCGTCACT
66 CTTTTCATAATTCGATGCTCGTAACC
* *
13711168 ATCCCTTTTCAAAAT-TGATAGCCCAAGCCATCCCTTTTCATTCA-TCGAT-GATCG
1 ATCCCTTTTCATAATATGATAGCCGAAGCCATCCCTTTTCATT-ATTCGATGGATCG
13711222 CCGTTACGCC
Statistics
Matches: 120, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
89 40 0.33
90 79 0.66
91 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (91 bp):
ATCCCTTTTCATAATATGATAGCCGAAGCCATCCCTTTTCATTATTCGATGGATCGTCACAATCC
CTTTTCATAATTCGATGCTCGTAACC
Found at i:13718585 original size:30 final size:30
Alignment explanation
Indices: 13718549--13718714 Score: 99
Period size: 30 Copynumber: 5.6 Consensus size: 30
13718539 ATGGTTAACA
*
13718549 TATCCCTTTTCATAATTTGATAATCGAAGT
1 TATCCCTTTTCATAATTTGATAATCGAAGC
*** *
13718579 TATCCC-TTTCATGGCTTGATAGTCGAAGC
1 TATCCCTTTTCATAATTTGATAATCGAAGC
* ** *
13718608 TAT-CCTATTTTATAATTTGATGGTCGTCA-C
1 TATCCCT-TTTCATAATTTGATAATCG-AAGC
* ** *
13718638 CATCCCTTTTCATAATTAT-ATAGCCAAAGC
1 TATCCCTTTTCATAATT-TGATAATCGAAGC
* ** *
13718668 CATCCCTTTTCATAATTTGATGGTCGTCA-C
1 TATCCCTTTTCATAATTTGATAATCG-AAGC
*
13718698 CATCCCTTTTCATAATT
1 TATCCCTTTTCATAATT
13718715 GGTAGCCGAA
Statistics
Matches: 107, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
28 2 0.02
29 23 0.21
30 76 0.71
31 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.40
Consensus pattern (30 bp):
TATCCCTTTTCATAATTTGATAATCGAAGC
Found at i:13720690 original size:64 final size:62
Alignment explanation
Indices: 13720569--13720690 Score: 156
Period size: 64 Copynumber: 1.9 Consensus size: 62
13720559 CTTAATCACT
* * * ** *
13720569 TTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGGTTAAATTTATTATTAAATC
1 TTAATATTAAAATAATAGAATATTTATCAAGATAAAAATTAAATTAAATTTAATATTAAATC
13720631 TTAA-ATTAAAATAATAGAATATTTATCTATAAGATAAAAATTAAATTAAATTTAATATTA
1 TTAATATTAAAATAATAGAATATTTATC---AAGATAAAAATTAAATTAAATTTAATATTA
13720691 CAATAATCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
61 21 0.41
62 4 0.08
64 26 0.51
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (62 bp):
TTAATATTAAAATAATAGAATATTTATCAAGATAAAAATTAAATTAAATTTAATATTAAATC
Found at i:13726501 original size:18 final size:19
Alignment explanation
Indices: 13726474--13726515 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
13726464 CATTTTCCTT
*
13726474 TTTTTCTTTCT-TTCTTTTA
1 TTTTTCTTTCTCTT-TTTCA
13726493 TTTTT-TTTCTCTTTTTCA
1 TTTTTCTTTCTCTTTTTCA
13726511 TTTTT
1 TTTTT
13726516 ACTTGCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTCTTTCTCTTTTTCA
Found at i:13726509 original size:22 final size:23
Alignment explanation
Indices: 13726472--13726514 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
13726462 CACATTTTCC
13726472 TTTTTTTCTTTCTTTC-TTTTAT
1 TTTTTTTCTTTCTTTCATTTTAT
13726494 TTTTTTTCTCTT-TTTCATTTT
1 TTTTTTTCT-TTCTTTCATTTT
13726515 TACTTGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTCTTTCTTTCATTTTAT
Found at i:13727498 original size:44 final size:45
Alignment explanation
Indices: 13727448--13727557 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 45
13727438 GCGTCGGTAA
13727448 CTTTAGCGACGCTTTTTAT-AAT-AAACGCCGCTATAGACCATGGT
1 CTTTAGCGACGC-TTTTATCAATGAAACGCCGCTATAGACCATGGT
* *
13727492 CTTTAGC-AGCGC--TTATCCATGAAACGCTGCTATAGACCATGGT
1 CTTTAGCGA-CGCTTTTATCAATGAAACGCCGCTATAGACCATGGT
*
13727535 CTTTAGCGGCGCTTATCTATCAA
1 CTTTAGCGACGCTT-T-TATCAA
13727558 ACGCCGNTGG
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
41 4 0.07
42 2 0.04
43 32 0.59
44 10 0.19
46 1 0.02
47 5 0.09
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (45 bp):
CTTTAGCGACGCTTTTATCAATGAAACGCCGCTATAGACCATGGT
Found at i:13727525 original size:43 final size:43
Alignment explanation
Indices: 13727470--13727563 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
13727460 TTTTTATAAT
*
13727470 AAACGCCGCTATAGACCATGGTCTTTAGCAGCGCTTATCCATG
1 AAACGCCGCTATAGACCATGGTCTTTAGCAGCGCTTATCCATC
* * *
13727513 AAACGCTGCTATAGACCATGGTCTTTAGCGGCGCTTATCTATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCAGCGCTTATCCATC
13727556 AAACGCCG
1 AAACGCCG
13727564 NTGGGGTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATGGTCTTTAGCAGCGCTTATCCATC
Found at i:13728715 original size:18 final size:19
Alignment explanation
Indices: 13728688--13728729 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
13728678 CATTTTCCTT
*
13728688 TTTTTCTTTCT-TTCTTTTA
1 TTTTTCTTTCTCTT-TTTCA
13728707 TTTTT-TTTCTCTTTTTCA
1 TTTTTCTTTCTCTTTTTCA
13728725 TTTTT
1 TTTTT
13728730 ACTTGCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTCTTTCTCTTTTTCA
Found at i:13728723 original size:22 final size:23
Alignment explanation
Indices: 13728686--13728728 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
13728676 CACATTTTCC
13728686 TTTTTTTCTTTCTTTC-TTTTAT
1 TTTTTTTCTTTCTTTCATTTTAT
13728708 TTTTTTTCTCTT-TTTCATTTT
1 TTTTTTTCT-TTCTTTCATTTT
13728729 TACTTGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTCTTTCTTTCATTTTAT
Found at i:13729739 original size:43 final size:43
Alignment explanation
Indices: 13729684--13730232 Score: 718
Period size: 43 Copynumber: 12.8 Consensus size: 43
13729674 TTTTTATAAT
* *
13729684 AAACGCCGCTATAGACCATGGTCTTTAGCAGCGCTTATCCATG
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* *
13729727 AAACGCTGCTATAGACCATGGTCTTTAGCGGCGCTTATCTATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
*
13729770 AAACGCCGCTATAGACCATGGTCTTTAGCGGCACTTATCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* * *
13729813 AAACGTCGCTATAGACCATGGTCTTTAGCGACGCTTATCTATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* *
13729856 AAACGTCG-TAATAGACCATGGTCTTTAGCGGCGCTTATCCATA
1 AAACGCCGCT-ATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* * * *
13729899 AAACTCCGCTATAGACCATGGTCTTTAGCGGCGCTTTTGCATT
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* * * *
13729942 AAACGCCGCTATAGACCATGGTCTTTAGAGGCACTTTTGCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
13729985 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTA-CACATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATC-CATC
*
13730028 AAACGCCGCTATAG-CCAATGGTCTTTAGCGGCGCTTACCCATC
1 AAACGCCGCTATAGACC-ATGGTCTTTAGCGGCGCTTATCCATC
* * *
13730071 AAACACCGCTATA-ACCTATGGTCTTTAGC-G-GC-TACCCATA
1 AAACGCCGCTATAGACC-ATGGTCTTTAGCGGCGCTTATCCATC
* * *
13730111 AAACGCCGCTATAGACCATGATCTTTCGCGGCGCTTACCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
* * * * *
13730154 AAATGCCGCTATAGACCTTGGTCTTTAGCGGCGCTTAACAAAC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
*
13730197 AAACGCCGCTATAG-CTCATGGTTTTTAGCGGCGCTT
1 AAACGCCGCTATAGAC-CATGGTCTTTAGCGGCGCTT
13730233 TTAGAAAAAC
Statistics
Matches: 451, Mismatches: 44, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
40 29 0.06
41 6 0.01
42 7 0.02
43 407 0.90
44 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
Found at i:13730608 original size:21 final size:20
Alignment explanation
Indices: 13730551--13730609 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
13730541 TTTAAGCTGT
13730551 TCTGCTTCCATCGCTGCAACC
1 TCTGCTTCC-TCGCTGCAACC
* * * *
13730572 TCTACTTCCCTTGCTGTAGCC
1 TCTGCTT-CCTCGCTGCAACC
13730593 TCTGCTTCTCTCGCTGC
1 TCTGCTTC-CTCGCTGC
13730610 CGCATCTGCT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 1 0.03
21 26 0.90
22 2 0.07
ACGTcount: A:0.08, C:0.41, G:0.15, T:0.36
Consensus pattern (20 bp):
TCTGCTTCCTCGCTGCAACC
Found at i:13730767 original size:87 final size:87
Alignment explanation
Indices: 13730590--13730758 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 87
13730580 CCTTGCTGTA
* * *
13730590 GCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGTTGCTGCTGGAGTTGTTCATACTTTCGTTG
1 GCCTCTGCTCCTCTCACTGCCGCATCTGCTTTAAGTTGCTGCTGGAGTTCTTCATACTTTCGTTG
13730655 AACCTCAGCTTCTCTCGCAGCT
66 AACCTCAGCTTCTCTCGCAGCT
* *
13730677 GCCTTTGCTCCTCTCACTGCCGCATCTGCTTTAAGTTG-TAGCTGGAGTTCTTCATATCTTT-TT
1 GCCTCTGCTCCTCTCACTGCCGCATCTGCTTTAAGTTGCT-GCTGGAGTTCTTCATA-CTTTCGT
13730740 TGAACCTCAGCTTCTCTCG
64 TGAACCTCAGCTTCTCTCG
13730759 ATGTTGCCTC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
86 1 0.01
87 70 0.93
88 4 0.05
ACGTcount: A:0.12, C:0.30, G:0.19, T:0.38
Consensus pattern (87 bp):
GCCTCTGCTCCTCTCACTGCCGCATCTGCTTTAAGTTGCTGCTGGAGTTCTTCATACTTTCGTTG
AACCTCAGCTTCTCTCGCAGCT
Found at i:13733824 original size:23 final size:23
Alignment explanation
Indices: 13733781--13733825 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13733771 TGCTTTTGTA
*
13733781 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
13733804 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
13733826 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:13734599 original size:23 final size:23
Alignment explanation
Indices: 13734556--13734600 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13734546 TGCTTTTGTA
*
13734556 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
13734579 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
13734601 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:13735146 original size:772 final size:781
Alignment explanation
Indices: 13733453--13736042 Score: 4139
Period size: 772 Copynumber: 3.2 Consensus size: 781
13733443 AATAAATGCC
*
13733453 ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAATTTATTTTATTT
1 ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
* *
13733518 GTCTTTATTTATAAGTTTAATGATTTTTAATAGA-TTTTT-TTTT-ATAATTGTTATGACATTAT
66 GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
*
13733580 TTTAAATTGATACATTAATATGCATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
131 TTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
13733645 TAACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCC
196 TAACATATATGCATAGATATATATCGTGGCATATA-TATATATATAACCCTGTCACTTATAATCC
13733710 TATATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAATTTTTTTTTTTGCT
260 ----TATATACTAGTGAC--AAT-A-AAGT--AAAGCAGAAAGAA-TTT--TTTTTTTTTTTGCT
13733775 TTTGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAA
312 TTTGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAA
* *
13733840 CCCTAGCTAACTCGTATTCTTCATGCAAATCCGAACACAAAAACCAAGCATTGTAACATTCAAAT
377 CCCTAGCTAACTCATATTCTTCATGCAAACCCGAACACAAAAACCAAGCATTGTAACATTCAAAT
*
13733905 CAATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATTAATATA
442 CAATAAGGGTAAACCATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATT-ATATA
13733970 TCTTATAAGCCGTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTC
506 TCTTATAAGCCGTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTC
* * *
13734035 AAACTGTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCTTAAATTAATAAACATTATG
571 AAGCCGTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATG
13734100 TATCGAACCCTAAAACCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAA
636 TATCGAACCCTAAAACCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAA
13734165 TACATAACTTTCATTTGCGGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAAA
701 TACATAACTTTCATTTGCGGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAAA
13734230 CGAAGTCGTTTCGGTT
766 CGAAGTCGTTTCGGTT
13734246 ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
1 ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
13734311 GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
66 GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
*
13734376 TTTAAATTGATACATTAATATGCATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
131 TTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
13734441 TAACATATATGCATAGATATATATCGTGGCATATAT-TATATATAACCCTGTCACTTATAATCCT
196 TAACATATATGCATAGATATATATCGTGGCATATATATATATATAACCCTGTCACTTATAATCCT
13734505 ATATACTAGTGAC-AT-AA-T-AAGCAGAAAG-A-TTTTTTTTTTTTTGCTTTTGTACCCTAAAA
261 ATATACTAGTGACAATAAAGTAAAGCAGAAAGAATTTTTTTTTTTTTTGCTTTTGTACCCTAAAA
13734564 CCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACCCTAGCTAACTCA
326 CCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACCCTAGCTAACTCA
13734629 TATTCTTCATGCAAACCCGAACACAAAAACCAAGCATTGTAACATTCAAATCAATAAGGGTAAAC
391 TATTCTTCATGCAAACCCGAACACAAAAACCAAGCATTGTAACATTCAAATCAATAAGGGTAAAC
* *
13734694 CATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCA-T-TACATCTTATAAGCCGTAA
456 CATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATTATATATCTTATAAGCCGTAA
*
13734757 ACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCATAAACCTAA
521 ACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCGTAAACCTAA
*
13734822 ACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTATCAAACCCTAAAA
586 ACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTATCGAACCCTAAAA
13734887 CCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAATACATAACTTTCATT
651 CCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAATACATAACTTTCATT
13734952 TGCGGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
716 TGCGGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
13735017 T
781 T
* *
13735018 ACAAATCTTGTTCTATAGCGGCGTTTTCTATATAAACGTCGCTAATTTTTCAATTTATTTTATTT
1 ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
13735083 GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
66 GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
*
13735148 TTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAATATA
131 TTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
* *
13735213 TAACATATATGCATAGATATATATCGTGGCATAT-TATATATATAACCCTGTCTCTTATAATCAT
196 TAACATATATGCATAGATATATATCGTGGCATATATATATATATAACCCTGTCACTTATAATCCT
*
13735277 ATATA-TCAGTGACATAATAAGAAGTAAAAAGTAGAAAGAATTTTAATTTTTTTTTTGCTTTTGT
261 ATATACT-AGTGAC--AAT-A-AAGT--AAAGCAGAAAGAATTTT--TTTTTTTTTTGCTTTTGT
*
13735341 ACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAGGGCTAAACCCTA
317 ACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACCCTA
*
13735406 GCTAACTCATATTCTTCATGCAAACCCAAACACAAAAACCAAGCATTGTAACATTCAAATCAATA
382 GCTAACTCATATTCTTCATGCAAACCCGAACACAAAAACCAAGCATTGTAACATTCAAATCAATA
*
13735471 AGGGTAAACCATAAACCATAAACATCAAGCCATAAAACAATAAATTTGATCATTAATATATCTTA
447 AGGGTAAACCATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATT-ATATATCTTA
*
13735536 TAAGCCGTAAACCTCGCATTAAAACTAACATGTAAACTCAAATCCTAAACCCCATTCCTCAAGCC
511 TAAGCCGTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCC
* *
13735601 GTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAAAATTATGTATTG
576 GTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTATCG
* * *
13735666 AACCCTAAAACCCCAAACCGTATACAATAAAACTTAAATATTAATCCCAAAACCCTAAAATACAT
641 AACCCTAAAACCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAATACAT
13735731 AACTTTCATTTGCGGCGTTTTTACAAAAAAACGCCTATAAAAACGTCACTAATACCAATAAACAG
706 AACTTTCATTTGCGGCGTTTTTAC-AAAAAACG-C--------CG---CTAATACCAATAAACAG
13735796 TATAAAAA-GAAGTCGTTTCGGTTACACATTTTGTGGCGTTTTTGCAATAAAT
758 TATAAAAACGAA---G--TC-G---------TT-T--CG-----G---T---T
* *
13735848 GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
1 ---ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTA
*
13735913 TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
63 TTTGTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
*
13735978 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
128 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATATATAAT
13736043 TTAAATATAA
Statistics
Matches: 1692, Mismatches: 38, Indels: 94
0.93 0.02 0.05
Matches are distributed among these distances:
771 2 0.00
772 536 0.32
774 1 0.00
775 199 0.12
777 2 0.00
778 2 0.00
779 2 0.00
780 10 0.01
782 9 0.01
783 2 0.00
784 5 0.00
786 196 0.12
787 3 0.00
789 219 0.13
790 22 0.01
791 1 0.00
793 96 0.06
794 32 0.02
795 5 0.00
796 119 0.07
799 2 0.00
801 3 0.00
802 25 0.01
804 1 0.00
806 2 0.00
807 1 0.00
816 2 0.00
817 1 0.00
819 2 0.00
824 1 0.00
827 1 0.00
830 1 0.00
833 187 0.11
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (781 bp):
ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
GTCTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
TTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATATATAATATA
TAACATATATGCATAGATATATATCGTGGCATATATATATATATAACCCTGTCACTTATAATCCT
ATATACTAGTGACAATAAAGTAAAGCAGAAAGAATTTTTTTTTTTTTTGCTTTTGTACCCTAAAA
CCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACCCTAGCTAACTCA
TATTCTTCATGCAAACCCGAACACAAAAACCAAGCATTGTAACATTCAAATCAATAAGGGTAAAC
CATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATTATATATCTTATAAGCCGTAA
ACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCGTAAACCTAA
ACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTATCGAACCCTAAAA
CCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAATACATAACTTTCATT
TGCGGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
T
Found at i:13735385 original size:23 final size:23
Alignment explanation
Indices: 13735342--13735386 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13735332 TGCTTTTGTA
*
13735342 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
13735365 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
13735387 AATTAAGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:13736344 original size:277 final size:277
Alignment explanation
Indices: 13735848--13736401 Score: 1090
Period size: 277 Copynumber: 2.0 Consensus size: 277
13735838 TGCAATAAAT
13735848 GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
1 GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
13735913 TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
66 TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
13735978 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
131 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
*
13736043 TTAAATATAACCAACATCATAATTTATAACTTATTGAAATTATTCAAATTAATATAATGTATAAC
196 TTAAATATAACCAACATCATAATTTATAACTTACTGAAATTATTCAAATTAATATAATGTATAAC
13736108 AATTTTAATTTAGATCC
261 AATTTTAATTTAGATCC
13736125 GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
1 GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
13736190 TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
66 TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
13736255 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
131 TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
*
13736320 TTAAATATAACCAACATTATAATTTATAACTTACTGAAATTATTCAAATTAATATAATGTATAAC
196 TTAAATATAACCAACATCATAATTTATAACTTACTGAAATTATTCAAATTAATATAATGTATAAC
13736385 AATTTTAATTTAGATCC
261 AATTTTAATTTAGATCC
13736402 CAATATATGC
Statistics
Matches: 275, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
277 275 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (277 bp):
GCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTTAATTTATTTTA
TTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACAT
TATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAAT
TTAAATATAACCAACATCATAATTTATAACTTACTGAAATTATTCAAATTAATATAATGTATAAC
AATTTTAATTTAGATCC
Found at i:13736606 original size:41 final size:41
Alignment explanation
Indices: 13736561--13736639 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
13736551 TAGATTTTCT
* * *
13736561 AATTAGCGCCGTTTTTACACAAACGCCGCTATAGACCGAAG
1 AATTACCGCCGCTGTTACACAAACGCCGCTATAGACCGAAG
*
13736602 AATTACCGGCGCTGTTACACAAACGCCGCTATAGACCG
1 AATTACCGCCGCTGTTACACAAACGCCGCTATAGACCG
13736640 GAACATTAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (41 bp):
AATTACCGCCGCTGTTACACAAACGCCGCTATAGACCGAAG
Found at i:13737606 original size:131 final size:131
Alignment explanation
Indices: 13737384--13737633 Score: 430
Period size: 131 Copynumber: 1.9 Consensus size: 131
13737374 GAATTTGGGC
* *
13737384 AACTACTGTTATATCTATATTTTTGTTTTGCCTATATATCGGCTAGACACATTGAGTTATAAGCT
1 AACTACTGTTATATCTATATTGTTGTTTTGCCTATATATCGGCTACACACATTGAGTTATAAGCT
* * *
13737449 CATACTTTTTGTTGACTGAATTGCAGGAAATCTATAAACTTAAGGGGCTTGACACTGAATTTCGA
66 CACACTTTTTGTTGACTGAATTGCAGGAAATCTACAAACTTAAGAGGCTTGACACTGAATTTCGA
13737514 A
131 A
13737515 AACTACTGTTATATCTATATTGTTGTTTTGCCTATATATCGGCTACACACATTG-GTTTATAAGC
1 AACTACTGTTATATCTATATTGTTGTTTTGCCTATATATCGGCTACACACATTGAG-TTATAAGC
*
13737579 TCACACTTTTTGTTGACTGAATTGCAGGAAATCTACAGACTTAAGAGGCTTGACA
65 TCACACTTTTTGTTGACTGAATTGCAGGAAATCTACAAACTTAAGAGGCTTGACA
13737634 TGTTGGGAGC
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
130 1 0.01
131 111 0.99
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (131 bp):
AACTACTGTTATATCTATATTGTTGTTTTGCCTATATATCGGCTACACACATTGAGTTATAAGCT
CACACTTTTTGTTGACTGAATTGCAGGAAATCTACAAACTTAAGAGGCTTGACACTGAATTTCGA
A
Found at i:13739552 original size:188 final size:189
Alignment explanation
Indices: 13739231--13739608 Score: 587
Period size: 188 Copynumber: 2.0 Consensus size: 189
13739221 GTCGAAAAAC
* * * * *
13739231 TTGAACTGTATGTCGCCACATCGTGAGGTGGAATTGCGTCATCGGGACAAAAAAGGATCACATCG
1 TTGAACTGCACGTCGCAACATCGTGACGTGGAATTACGTCATCGGGACAAAAAAGGATCACATCG
* * ** * * * *
13739296 TGAAGATTAGTGTTTTCTTTTCGTCGTGATGTCGACTGCTCGTTGGGACAAAGAACACTTCCTCG
66 TGAAGATAAGTGCTTTCTTTTCACCGTGACGTCGACTACTCATTGGGACAAAGAACACTTCATCG
13739361 TTGCGACGTTACACAATTTTTAGTCTAAAATGCGTGGCATAACTCCACATTAGTGCTAA
131 TTGCGACGTTACACAATTTTTAGTCTAAAATGCGTGGCATAACTCCACATTAGTGCTAA
*
13739420 TTGAACTGCACGTCGCAACATCGTGACGTGGAATTAC-TCATCGGGACGAAAAAGGATCACATCG
1 TTGAACTGCACGTCGCAACATCGTGACGTGGAATTACGTCATCGGGACAAAAAAGGATCACATCG
**
13739484 TGAAGATAAGTGCTTTCTTTTCACCGTGACGTCGACTACTCATTGGGACAAAGAACGGTTCATCG
66 TGAAGATAAGTGCTTTCTTTTCACCGTGACGTCGACTACTCATTGGGACAAAGAACACTTCATCG
* *
13739549 TTGCGACGTTACACACTTTTTAGTCTAAAATGTGTGGCATAACTCCACATTAGTGCTAA
131 TTGCGACGTTACACAATTTTTAGTCTAAAATGCGTGGCATAACTCCACATTAGTGCTAA
13739608 T
1 T
13739609 CGTAAGAGTC
Statistics
Matches: 171, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
188 139 0.81
189 32 0.19
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (189 bp):
TTGAACTGCACGTCGCAACATCGTGACGTGGAATTACGTCATCGGGACAAAAAAGGATCACATCG
TGAAGATAAGTGCTTTCTTTTCACCGTGACGTCGACTACTCATTGGGACAAAGAACACTTCATCG
TTGCGACGTTACACAATTTTTAGTCTAAAATGCGTGGCATAACTCCACATTAGTGCTAA
Found at i:13740963 original size:19 final size:19
Alignment explanation
Indices: 13740920--13740964 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
13740910 GAGAAAATAG
13740920 AATTTTATGTATTGGGCTC
1 AATTTTATGTATTGGGCTC
13740939 -ATTTTATGTATTGGG-TGC
1 AATTTTATGTATTGGGCT-C
13740957 AATTTTAT
1 AATTTTAT
13740965 ATGTTATCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.04
18 16 0.67
19 7 0.29
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.51
Consensus pattern (19 bp):
AATTTTATGTATTGGGCTC
Found at i:13747719 original size:2 final size:2
Alignment explanation
Indices: 13747708--13747742 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
13747698 TGAGGTCCAC
*
13747708 TA TA -A TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13747743 AAGATAAGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:13748351 original size:85 final size:87
Alignment explanation
Indices: 13748199--13748463 Score: 290
Period size: 85 Copynumber: 3.1 Consensus size: 87
13748189 TTTAAAAGCA
*
13748199 CCGCTAAA-AGTCATGATCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTT
1 CCGCTAAAGAGTCATGATCTTTAACGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTT
*
13748263 AGCGGCGCTTTTCCCATAAACG
66 AGCGGCGCTTTTCCCACAAACG
* * *
13748285 CCGCTAAAGA-TCATGA-CTTTTAACGGCGCTTTT-CCATAGATGCCGCTAAAGACCATGACCTT
1 CCGCTAAAGAGTCATGATC-TTTAACGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTT
* *
13748347 TAGCGGCGCTTTTCCGACAAATG
65 TAGCGGCGCTTTTCCCACAAACG
* * * * ** * * * * *
13748370 CCGCTAAAGA-CCTTGATCTTTAGCGGCGCATTTATAAAAAACACTGCTAAAGGCCATAACCTTT
1 CCGCTAAAGAGTCATGATCTTTAACGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTT
* *
13748434 AGCGACGCTTTTTCCGA-AAACG
66 AGCGGCGC-TTTTCCCACAAACG
13748456 CCGCTAAA
1 CCGCTAAA
13748464 AACCATGACC
Statistics
Matches: 152, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
85 74 0.49
86 69 0.45
87 9 0.06
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (87 bp):
CCGCTAAAGAGTCATGATCTTTAACGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTT
AGCGGCGCTTTTCCCACAAACG
Found at i:13748419 original size:128 final size:129
Alignment explanation
Indices: 13748199--13748477 Score: 321
Period size: 128 Copynumber: 2.2 Consensus size: 129
13748189 TTTAAAAGCA
** *
13748199 CCGCTAAAAGTCATGATCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTTA
1 CCGCTAAAAACCATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTTA
* * * * * * * * * * *
13748264 GCGGCGCTTTTCCCATAAACGCCGCTAAAGATCATGACTTTTAACGGCGC-TTTTCC-ATAGATG
66 GCGGCGCATTTACAAAAAACACCGCTAAAGACCATAACCTTTAACGACGCTTTTTCCGA-AAACG
* * * *
13748327 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTT-CCGACAAATGCCGCTAAAGACCTTGATCTTT
1 CCGCTAAAAACCATGACCTTTAGCGGCGCTTTTACC-ACAAACGCCGCTAAAGACCATGACCTTT
* * * *
13748391 AGCGGCGCATTTATAAAAAACACTGCTAAAGGCCATAACCTTTAGCGACGCTTTTTCCGAAAACG
65 AGCGGCGCATTTACAAAAAACACCGCTAAAGACCATAACCTTTAACGACGCTTTTTCCGAAAACG
13748456 CCGCTAAAAACCATGACCTTTA
1 CCGCTAAAAACCATGACCTTTA
13748478 ATGACGCTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
127 2 0.02
128 92 0.74
129 30 0.24
130 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (129 bp):
CCGCTAAAAACCATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTTTA
GCGGCGCATTTACAAAAAACACCGCTAAAGACCATAACCTTTAACGACGCTTTTTCCGAAAACG
Found at i:13748486 original size:43 final size:43
Alignment explanation
Indices: 13748210--13748477 Score: 290
Period size: 43 Copynumber: 6.3 Consensus size: 43
13748200 CGCTAAAAGT
* *
13748210 CATGATCTTTAGCGGCGCTTTTACC-ACAAACGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTT-CCGATAAACGCCGCTAAAGAC
* *
13748253 CATGACCTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGAT
1 CATGACCTTTAGCGGCGCTTTTCCGATAAACGCCGCTAAAGAC
* * * *
13748296 CATGACTTTTAACGGCGCTTTTCC-ATAGATGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTCCGATAAACGCCGCTAAAGAC
* *
13748338 CATGACCTTTAGCGGCGCTTTTCCGACAAATGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTCCGATAAACGCCGCTAAAGAC
* * * *** * * * *
13748381 CTTGATCTTTAGCGGCGCATTTATAAAAAACACTGCTAAAGGC
1 CATGACCTTTAGCGGCGCTTTTCCGATAAACGCCGCTAAAGAC
* * *
13748424 CATAACCTTTAGCGACGCTTTTTCCGA-AAACGCCGCTAAAAAC
1 CATGACCTTTAGCGGCGC-TTTTCCGATAAACGCCGCTAAAGAC
13748467 CATGACCTTTA
1 CATGACCTTTA
13748478 ATGACGCTTA
Statistics
Matches: 186, Mismatches: 36, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
42 39 0.21
43 143 0.77
44 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTCCGATAAACGCCGCTAAAGAC
Found at i:13752281 original size:32 final size:33
Alignment explanation
Indices: 13752245--13752309 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
13752235 TCAAATAAAA
13752245 CCCCAA-AGAAAGCATCTAACATGAAGTGCAAT
1 CCCCAAGAGAAAGCATCTAACATGAAGTGCAAT
13752277 CCCCAAGAGAAAGCATCTAACATGAAGTGCAAT
1 CCCCAAGAGAAAGCATCTAACATGAAGTGCAAT
13752310 AAACTTACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.19
33 26 0.81
ACGTcount: A:0.43, C:0.25, G:0.17, T:0.15
Consensus pattern (33 bp):
CCCCAAGAGAAAGCATCTAACATGAAGTGCAAT
Found at i:13753789 original size:7 final size:7
Alignment explanation
Indices: 13753776--13753811 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
13753766 AACCCTAGAT
13753776 CCCTAAC
1 CCCTAAC
*
13753783 TCCTAAC
1 CCCTAAC
13753790 CCCTAAC
1 CCCTAAC
13753797 CCCTAAC
1 CCCTAAC
13753804 CCCTAAC
1 CCCTAAC
13753811 C
1 C
13753812 TAAACCTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.28, C:0.56, G:0.00, T:0.17
Consensus pattern (7 bp):
CCCTAAC
Found at i:13753790 original size:21 final size:20
Alignment explanation
Indices: 13753766--13753811 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
13753756 CGACCCTTGA
* *
13753766 AACCCTAGATCCCTAACTCCT
1 AACCCTA-ACCCCTAACCCCT
13753787 AACCCCTAACCCCTAACCCCT
1 AA-CCCTAACCCCTAACCCCT
13753808 AACC
1 AACC
13753812 TAAACCTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 15 0.68
22 5 0.23
ACGTcount: A:0.30, C:0.50, G:0.02, T:0.17
Consensus pattern (20 bp):
AACCCTAACCCCTAACCCCT
Found at i:13754154 original size:14 final size:14
Alignment explanation
Indices: 13754135--13754177 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
13754125 CTAAACCTGG
13754135 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
*
13754149 CCCTAACCCTTAAA
1 CCCTAAACCTTAAA
* *
13754163 CCATAAACCATAAA
1 CCCTAAACCTTAAA
13754177 C
1 C
13754178 AATAATCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (14 bp):
CCCTAAACCTTAAA
Found at i:13754408 original size:236 final size:236
Alignment explanation
Indices: 13754115--13754587 Score: 883
Period size: 236 Copynumber: 2.0 Consensus size: 236
13754105 AAACCCCTAA
* *
13754115 CCCCTAAATCCTAAACCTGGCCCTAAACCTTAAACCCTAACCCTTAAACCATAAACCATAAACAA
1 CCCCTAAATCCTAAACCTGACCCTAAACCTTAAACCCCAACCCTTAAACCATAAACCATAAACAA
* *
13754180 TAATCCCTAAACTATAATGATAATTAATTTAATATTTTAAAATTAATACTATCTCTTTTACGATT
66 TAATCCCTAAACTATAATGACAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACGATT
13754245 ATATAAAATATTTTTAATATATAAATATCAAACACGTCATAGACACTTAAAACTTTGAGATAGTT
131 ATATAAAATATTTTTAATATATAAATATCAAACACGTCATAGACACTTAAAACTTTGAGATAGTT
13754310 ATACTATTTTTTTTCACTTATAGGAACCTCATATACTCAAC
196 ATACTATTTTTTTTCACTTATAGGAACCTCATATACTCAAC
*
13754351 CCCCTAAATCCTAAACCTGACCCTAAACCTTAAACCCCAACCCTTAAACCGTAAACCATAAACAA
1 CCCCTAAATCCTAAACCTGACCCTAAACCTTAAACCCCAACCCTTAAACCATAAACCATAAACAA
* *
13754416 TAATCCCTAAACTATAATTACAATTAATTCAATCTTTTAAAATTAATACTATCTCTTTTACGATT
66 TAATCCCTAAACTATAATGACAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACGATT
13754481 ATATAAAATATTTTTAATATATAAATATCAAACACGTCATAGACACTTAAAACTTTGAGATAGTT
131 ATATAAAATATTTTTAATATATAAATATCAAACACGTCATAGACACTTAAAACTTTGAGATAGTT
13754546 ATACTATTTTTTTTCACTTATAGGAACCTCATATACTCAAC
196 ATACTATTTTTTTTCACTTATAGGAACCTCATATACTCAAC
13754587 C
1 C
13754588 ACTGCAAGTC
Statistics
Matches: 230, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
236 230 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.34
Consensus pattern (236 bp):
CCCCTAAATCCTAAACCTGACCCTAAACCTTAAACCCCAACCCTTAAACCATAAACCATAAACAA
TAATCCCTAAACTATAATGACAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACGATT
ATATAAAATATTTTTAATATATAAATATCAAACACGTCATAGACACTTAAAACTTTGAGATAGTT
ATACTATTTTTTTTCACTTATAGGAACCTCATATACTCAAC
Found at i:13755216 original size:41 final size:41
Alignment explanation
Indices: 13755154--13755386 Score: 358
Period size: 41 Copynumber: 5.7 Consensus size: 41
13755144 ATATTTTTTA
* *
13755154 CGGCGCTTTTTTAAAAACGCCGCTAAAGACCTGAGCATTAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
* *
13755195 CGGCACTTTTTCAAAAACGCCGCTAAAGACCCCAGCATTAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
*
13755236 TGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
* *
13755277 CGGCACTTTTTCAAAAACGTCGCTAAAGACCCGAGCATTAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
* * *
13755318 CGACGCTTTTTTAAAAACGCTGCTAAAGACCCGAGCATTAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
* *
13755359 CGGCGCTTTTCCAAAAATGCCGCTAAAG
1 CGGCGCTTTTTCAAAAACGCCGCTAAAG
13755387 CCCTGAAAAA
Statistics
Matches: 172, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 172 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (41 bp):
CGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAG
Found at i:13755486 original size:39 final size:38
Alignment explanation
Indices: 13755443--13755557 Score: 131
Period size: 40 Copynumber: 2.9 Consensus size: 38
13755433 CGCTTTCTGG
* *
13755443 AAAACACCGCTAATGCTCATTTTTAGCGGCTTTTTCCAA
1 AAAACGCCGCTAATGCTGATTTTTAGCGGCTTTTTCC-A
* * *
13755482 AAAACGCCGCTAATACTGGATCTTTAGCGGCGTTTTTCCT
1 AAAACGCCGCTAATGCT-GATTTTTAGCGGC-TTTTTCCA
* *
13755522 AAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTT
1 AAAACGCCGCTAATGC-TGATTTTTAGCGGCTTTTT
13755558 GTATCCAAAC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
39 19 0.30
40 37 0.58
41 8 0.12
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (38 bp):
AAAACGCCGCTAATGCTGATTTTTAGCGGCTTTTTCCA
Found at i:13763440 original size:7 final size:7
Alignment explanation
Indices: 13763428--13763463 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
13763418 AAGAGAACCC
13763428 CTTATTT
1 CTTATTT
13763435 CTTATTT
1 CTTATTT
*
13763442 CTTGTTT
1 CTTATTT
13763449 ACTTATTT
1 -CTTATTT
13763457 CTTATTT
1 CTTATTT
13763464 ATTTTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (7 bp):
CTTATTT
Found at i:13763455 original size:15 final size:15
Alignment explanation
Indices: 13763428--13763464 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
13763418 AAGAGAACCC
13763428 CTTATTT-CTTATTT
1 CTTATTTACTTATTT
*
13763442 CTTGTTTACTTATTT
1 CTTATTTACTTATTT
13763457 CTTATTTA
1 CTTATTTA
13763465 TTTTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.16, C:0.14, G:0.03, T:0.68
Consensus pattern (15 bp):
CTTATTTACTTATTT
Found at i:13763471 original size:22 final size:22
Alignment explanation
Indices: 13763428--13763471 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
13763418 AAGAGAACCC
*
13763428 CTTATTTCTTATTTCTTGTTTA
1 CTTATTTCTTATTTATTGTTTA
*
13763450 CTTATTTCTTATTTATTTTTTA
1 CTTATTTCTTATTTATTGTTTA
13763472 AAAGAGTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.02, T:0.70
Consensus pattern (22 bp):
CTTATTTCTTATTTATTGTTTA
Found at i:13764617 original size:24 final size:25
Alignment explanation
Indices: 13764584--13764634 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
13764574 CAAAAATTGA
13764584 ATAATCAAAT-AAAGACTAAGACATT
1 ATAATCAAATCAAAGA-TAAGACATT
*
13764609 ATAA-CAAATCCAAGATAAGACATT
1 ATAATCAAATCAAAGATAAGACATT
13764633 AT
1 AT
13764635 CTAGAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.24
Consensus pattern (25 bp):
ATAATCAAATCAAAGATAAGACATT
Found at i:13768063 original size:105 final size:100
Alignment explanation
Indices: 13767885--13768100 Score: 272
Period size: 105 Copynumber: 2.1 Consensus size: 100
13767875 AATTAACGGA
* * * *
13767885 TAAGACCATGGTTGGACCATGGTAGTTCTTAAATGTAAGACCATAGATGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATTATTAAATGTAAGACCATAGATGGGCTATGGCATTCTAA
** *
13767950 TGAAAAGACCATAA-CTGGGTTATGGCACCTTGAACG
66 TGAAAAGACCATAATC-GGGTTATGGCA-CTACAAAG
* *
13767986 TAAGACCATGGTTGGACCATGGCAATATATATACATGTGTAAGACCATAGCTGGGCTATGGCATT
1 TAAGACCATGGTTGGACCATGGCAAT-TAT-TA-A-ATGTAAGACCATAGATGGGCTATGGCATT
* *
13768051 CTGATGATAAGACCATAATCGGGTTATGGCACTACAAAG
62 CTAATGAAAAGACCATAATCGGGTTATGGCACTACAAAG
13768090 TAAGACCATGG
1 TAAGACCATGG
13768101 CAGGGTCATA
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
101 24 0.24
102 2 0.02
103 2 0.02
104 17 0.17
105 53 0.54
106 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (100 bp):
TAAGACCATGGTTGGACCATGGCAATTATTAAATGTAAGACCATAGATGGGCTATGGCATTCTAA
TGAAAAGACCATAATCGGGTTATGGCACTACAAAG
Found at i:13774293 original size:13 final size:13
Alignment explanation
Indices: 13774275--13774302 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13774265 AGCCATTGAT
13774275 AAAGAGTGAAGTG
1 AAAGAGTGAAGTG
13774288 AAAGAGTGAAGTG
1 AAAGAGTGAAGTG
13774301 AA
1 AA
13774303 CTAAAGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.36, T:0.14
Consensus pattern (13 bp):
AAAGAGTGAAGTG
Found at i:13776741 original size:26 final size:25
Alignment explanation
Indices: 13776678--13776743 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 25
13776668 TTTGGCCCGA
13776678 ATATA-TTATATTATAAAAAATTATAT
1 ATATATTTATA-T-TAAAAAATTATAT
* * *
13776704 TTATTATATATATTAAATAATTATTAT
1 ATA-TATTTATATTAAAAAATTA-TAT
13776731 ATATATTTATATT
1 ATATATTTATATT
13776744 TATATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
26 20 0.62
27 8 0.25
28 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATATTTATATTAAAAAATTATAT
Found at i:13776755 original size:26 final size:26
Alignment explanation
Indices: 13776678--13776755 Score: 72
Period size: 28 Copynumber: 3.0 Consensus size: 26
13776668 TTTGGCCCGA
*
13776678 ATATA-TTATA-TTATAAAAAATTAT
1 ATATATTTATATTTATAATAAATTAT
*
13776702 ATTTATTATATATATTA-AATAATTATTAT
1 ATATATT-TATAT-TTATAATAA--ATTAT
*
13776731 ATATATTTATATTTATATTAAATTA
1 ATATATTTATATTTATAATAAATTA
13776756 CCAACCCAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
24 4 0.09
25 1 0.02
26 8 0.19
27 7 0.16
28 12 0.28
29 11 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
ATATATTTATATTTATAATAAATTAT
Found at i:13778489 original size:21 final size:21
Alignment explanation
Indices: 13778461--13778610 Score: 113
Period size: 21 Copynumber: 7.1 Consensus size: 21
13778451 CGTGTTTACT
*
13778461 TTCCGTTTAGCTCTTACGAGC
1 TTCCGTTTAGCTCTTATGAGC
* * * *
13778482 TTCTGTTTAACTCATATGAGT
1 TTCCGTTTAGCTCTTATGAGC
*
13778503 TTCCGTTCAGCTC-TATTGAGC
1 TTCCGTTTAGCTCTTA-TGAGC
* * * * *
13778524 TTCTGTTTAACCCTTATGGGT
1 TTCCGTTTAGCTCTTATGAGC
* *
13778545 TTCCGTTCAGCTCTTACGAGC
1 TTCCGTTTAGCTCTTATGAGC
* * * * *
13778566 TTCCATTCAACTCTTACGAGT
1 TTCCGTTTAGCTCTTATGAGC
*
13778587 TTCCGTTTAGCTCTCATGAGC
1 TTCCGTTTAGCTCTTATGAGC
13778608 TTC
1 TTC
13778611 AGTTCAGCCT
Statistics
Matches: 96, Mismatches: 31, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
20 2 0.02
21 92 0.96
22 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.41
Consensus pattern (21 bp):
TTCCGTTTAGCTCTTATGAGC
Found at i:13778524 original size:42 final size:42
Alignment explanation
Indices: 13778460--13778610 Score: 178
Period size: 42 Copynumber: 3.6 Consensus size: 42
13778450 TCGTGTTTAC
* *
13778460 TTTCCGTTTAGCTCTTACGAGCTTCTGTTTAACTCATATGAG
1 TTTCCGTTCAGCTCTTACGAGCTTCTGTTTAACTCTTATGAG
* * *
13778502 TTTCCGTTCAGCTC-TATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTTA-CGAGCTTCTGTTTAACTCTTATGAG
** * *
13778544 TTTCCGTTCAGCTCTTACGAGCTTCCATTCAACTCTTACGAG
1 TTTCCGTTCAGCTCTTACGAGCTTCTGTTTAACTCTTATGAG
* * *
13778586 TTTCCGTTTAGCTCTCATGAGCTTC
1 TTTCCGTTCAGCTCTTACGAGCTTC
13778611 AGTTCAGCCT
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
41 2 0.02
42 88 0.96
43 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.41
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTTACGAGCTTCTGTTTAACTCTTATGAG
Found at i:13783386 original size:41 final size:41
Alignment explanation
Indices: 13783329--13783445 Score: 216
Period size: 41 Copynumber: 2.9 Consensus size: 41
13783319 AATATTTTTT
13783329 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTA
*
13783370 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTA
*
13783411 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGA
13783446 AAAATAAAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTA
Found at i:13785302 original size:16 final size:17
Alignment explanation
Indices: 13785281--13785313 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13785271 AGAGACTTGA
13785281 AACTGA-AGGTGATGAG
1 AACTGAGAGGTGATGAG
*
13785297 AACTGAGTGGTGATGAG
1 AACTGAGAGGTGATGAG
13785314 CTTTATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.21
Consensus pattern (17 bp):
AACTGAGAGGTGATGAG
Found at i:13787270 original size:8 final size:8
Alignment explanation
Indices: 13787257--13787333 Score: 50
Period size: 8 Copynumber: 9.1 Consensus size: 8
13787247 TGTAATTTTA
13787257 TTATATTT
1 TTATATTT
13787265 TTATATTT
1 TTATATTT
13787273 TTATAACCTTT
1 TTAT-A--TTT
13787284 TTA-ATTT
1 TTATATTT
13787291 ATTAT-TTT
1 -TTATATTT
* *
13787299 ATATAAATT
1 TTAT-ATTT
13787308 TTATCATTT
1 TTAT-ATTT
* *
13787317 TAATAATT
1 TTATATTT
13787325 TTATATTT
1 TTATATTT
13787333 T
1 T
13787334 ATTTTAACAA
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
7 6 0.11
8 28 0.53
9 13 0.25
11 6 0.11
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (8 bp):
TTATATTT
Found at i:13787336 original size:40 final size:40
Alignment explanation
Indices: 13787292--13787367 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
13787282 TTTTAATTTA
* * *
13787292 TTATTTTATATAAATTTTATCA-TTTTAATAATTTTATATT
1 TTATTTTA-ACAAATTTTATAATTTTTAAAAATTTTATATT
13787332 TTATTTTAACAAATTTTATAATTTTTAAAAATTTTA
1 TTATTTTAACAAATTTTATAATTTTTAAAAATTTTA
13787368 CAATATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 11 0.34
40 21 0.66
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (40 bp):
TTATTTTAACAAATTTTATAATTTTTAAAAATTTTATATT
Found at i:13787339 original size:21 final size:23
Alignment explanation
Indices: 13787313--13787356 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
13787303 AAATTTTATC
*
13787313 ATTTTAA-TAATTTTAT-ATTTT
1 ATTTTAACAAATTTTATAATTTT
13787334 ATTTTAACAAATTTTATAATTTT
1 ATTTTAACAAATTTTATAATTTT
13787357 TAAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 8 0.40
23 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTTTAACAAATTTTATAATTTT
Found at i:13787349 original size:10 final size:10
Alignment explanation
Indices: 13787334--13787382 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 10
13787324 TTTATATTTT
13787334 ATTTTAACAA
1 ATTTTAACAA
*
13787344 ATTTT-ATAA
1 ATTTTAACAA
*
13787353 TTTTTAA-AA
1 ATTTTAACAA
13787362 ATTTT-ACAA
1 ATTTTAACAA
13787371 TATTTTAACAA
1 -ATTTTAACAA
13787382 A
1 A
13787383 AATTATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
8 1 0.03
9 15 0.47
10 12 0.38
11 4 0.12
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTTTAACAA
Found at i:13787363 original size:18 final size:18
Alignment explanation
Indices: 13787288--13787378 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 18
13787278 ACCTTTTTAA
* *
13787288 TTTATTATTTTATATAAAT
1 TTTATAATTTT-TAAAAAT
* *
13787307 TTTATCA-TTTTAATAAT
1 TTTATAATTTTTAAAAAT
*
13787324 TTTATATTTTATTTTAACAAAT
1 TTTATA--AT-TTTTAA-AAAT
13787346 TTTATAATTTTTAAAAAT
1 TTTATAATTTTTAAAAAT
*
13787364 TTTACAATATTTTAA
1 TTTATAAT-TTTTAA
13787379 CAAAAATTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
17 10 0.17
18 14 0.24
19 18 0.31
20 1 0.02
21 6 0.10
22 9 0.16
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATAATTTTTAAAAAT
Found at i:13798944 original size:20 final size:20
Alignment explanation
Indices: 13798919--13798967 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
13798909 CTATACGTCT
13798919 TGGACACACGGGACATGGCC
1 TGGACACACGGGACATGGCC
13798939 TGGACACACGGGACATGGCC
1 TGGACACACGGGACATGGCC
13798959 TGGACACAC
1 TGGACACAC
13798968 AGGCATGTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.10
Consensus pattern (20 bp):
TGGACACACGGGACATGGCC
Found at i:13802609 original size:73 final size:73
Alignment explanation
Indices: 13802523--13802674 Score: 286
Period size: 73 Copynumber: 2.1 Consensus size: 73
13802513 AGTTCTTGTC
13802523 GATTGTGAATTAAAGGTAATTACTTAAATAATGGGAGACACCTAGTCTTTCGTACTTTAAAAATT
1 GATTGTGAATTAAAGGTAATTACTTAAATAATGGGAGACACCTAGTCTTTCGTACTTTAAAAATT
13802588 TCAGCTTG
66 TCAGCTTG
* *
13802596 GATTGTGAATTAAAGGTAATTACTTAAATAATGGGAGGCACCTAGTCTTTCGTACTTTAAAAGTT
1 GATTGTGAATTAAAGGTAATTACTTAAATAATGGGAGACACCTAGTCTTTCGTACTTTAAAAATT
13802661 TCAGCTTG
66 TCAGCTTG
13802669 GATTGT
1 GATTGT
13802675 TTGAATCTTT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (73 bp):
GATTGTGAATTAAAGGTAATTACTTAAATAATGGGAGACACCTAGTCTTTCGTACTTTAAAAATT
TCAGCTTG
Found at i:13805434 original size:15 final size:15
Alignment explanation
Indices: 13805414--13805442 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
13805404 GTATTGTTGC
13805414 TTGATAACACGGTGA
1 TTGATAACACGGTGA
13805429 TTGATAACACGGTG
1 TTGATAACACGGTG
13805443 TGTAAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:13814388 original size:92 final size:92
Alignment explanation
Indices: 13814231--13814421 Score: 310
Period size: 92 Copynumber: 2.1 Consensus size: 92
13814221 ATTTGGAATG
* * *
13814231 ACTTCTAGCTGCCTGAACCTGGAGATGGGAGGGTCTCGTGTCAAAACATTAATATTAGATGGACT
1 ACTTCTAGCTACCAGAACCTAGAGATGGGAGGGTCTCGTGTCAAAACATTAATATTAGATGGACT
*
13814296 ATGGTGAATCAGTTAATTAATGAAGAT
66 ATGGTGAATCAATTAATTAATGAAGAT
* * * *
13814323 ACTTCTAGCTACCAGAACCTAGAGATGGGAGGGTCTTGTGTCAGACCATTGATATTAGATGGACT
1 ACTTCTAGCTACCAGAACCTAGAGATGGGAGGGTCTCGTGTCAAAACATTAATATTAGATGGACT
13814388 ATGGTGAATCAATTAATTAATGAAGAT
66 ATGGTGAATCAATTAATTAATGAAGAT
13814415 ACTTCTA
1 ACTTCTA
13814422 CTTGGAATGC
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (92 bp):
ACTTCTAGCTACCAGAACCTAGAGATGGGAGGGTCTCGTGTCAAAACATTAATATTAGATGGACT
ATGGTGAATCAATTAATTAATGAAGAT
Found at i:13823242 original size:23 final size:23
Alignment explanation
Indices: 13823207--13823250 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
13823197 AGTAATTTTT
*
13823207 TCATTAAATTA-TTAATAAATTAA
1 TCATTAAACTATTTAA-AAATTAA
*
13823230 TCATTGAACTATTTAAAAATT
1 TCATTAAACTATTTAAAAATT
13823251 TTCATTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (23 bp):
TCATTAAACTATTTAAAAATTAA
Found at i:13836892 original size:9 final size:9
Alignment explanation
Indices: 13836878--13836926 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
13836868 GTAGTGATTC
*
13836878 AATTTGGTT
1 AATTCGGTT
*
13836887 AATTTGGTT
1 AATTCGGTT
*
13836896 AATTCGGGT
1 AATTCGGTT
13836905 AATTCGGTT
1 AATTCGGTT
13836914 AATTCGGTT
1 AATTCGGTT
13836923 AATT
1 AATT
13836927 TTTAACCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.24, C:0.06, G:0.22, T:0.47
Consensus pattern (9 bp):
AATTCGGTT
Found at i:13839056 original size:17 final size:17
Alignment explanation
Indices: 13839034--13839077 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
13839024 ATTTGAGGTT
*
13839034 AGATCGAGGAAAGAATA
1 AGATCGAAGAAAGAATA
13839051 AGATCGAAGAAAGAATA
1 AGATCGAAGAAAGAATA
13839068 AGATCGAAGA
1 AGATCGAAGA
13839078 CTAAGTGGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.55, C:0.07, G:0.27, T:0.11
Consensus pattern (17 bp):
AGATCGAAGAAAGAATA
Found at i:13839413 original size:50 final size:50
Alignment explanation
Indices: 13839303--13839598 Score: 292
Period size: 50 Copynumber: 5.8 Consensus size: 50
13839293 ATTTGGGTAA
* * *
13839303 AGAGATCCCATGTAAGACCATGTCTGGGACATGGTATTGACATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATG
* * *
13839359 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGTACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
13839409 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * * *
13839459 AAAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
13839509 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
13839558 AAACATCCCATGTAAGACCATGTCT-GGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13839599 TGTTATTATC
Statistics
Matches: 205, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
48 14 0.07
49 25 0.12
50 124 0.60
53 3 0.01
55 2 0.01
56 37 0.18
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:13847084 original size:116 final size:115
Alignment explanation
Indices: 13846880--13847110 Score: 444
Period size: 116 Copynumber: 2.0 Consensus size: 115
13846870 CGACGACAGT
13846880 TCGAGTTACGCACTGGGTCCTAAATCTCGCCCAACGCCAAAGAAGGATTTTGTCCCTCACGAGAA
1 TCGAGTTACGCACTGGGTCCTAAATCTCGCCCAACGCCAAAGAAGGATTTTGTCCCTCACGAGAA
13846945 TCGCACCCAAATTAATACTGTAGCGAAAAACTTCAAAATGATAGGGAAAG
66 TCGCACCCAAATTAATACTGTAGCGAAAAACTTCAAAATGATAGGGAAAG
13846995 NTCGAGTTACGCACTGGGTCCTAAATCTCGCCCAACGCCAAAGAAGGATTTTGTCCCTCACGAGA
1 -TCGAGTTACGCACTGGGTCCTAAATCTCGCCCAACGCCAAAGAAGGATTTTGTCCCTCACGAGA
*
13847060 ATCGCACCCAAATTAATACTGTAGCGAAAAACTTCAAAATGATATGGAAAG
65 ATCGCACCCAAATTAATACTGTAGCGAAAAACTTCAAAATGATAGGGAAAG
13847111 AAATAAAAAA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.21
Consensus pattern (115 bp):
TCGAGTTACGCACTGGGTCCTAAATCTCGCCCAACGCCAAAGAAGGATTTTGTCCCTCACGAGAA
TCGCACCCAAATTAATACTGTAGCGAAAAACTTCAAAATGATAGGGAAAG
Found at i:13847588 original size:13 final size:13
Alignment explanation
Indices: 13847570--13847594 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13847560 CAAGCAGGAC
13847570 AACATTAAACTAA
1 AACATTAAACTAA
13847583 AACATTAAACTA
1 AACATTAAACTA
13847595 CTCTTTCGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (13 bp):
AACATTAAACTAA
Found at i:13850992 original size:30 final size:30
Alignment explanation
Indices: 13850958--13851023 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
13850948 CACATGGCTG
* * * *
13850958 TGTGTCGCACACGGCTTACTCACACGGTCA
1 TGTGTCACACACGGCCTACTCACACAGCCA
*
13850988 TGTGTCACACATGGCCTACTCACACAGCCA
1 TGTGTCACACACGGCCTACTCACACAGCCA
13851018 TGTGTC
1 TGTGTC
13851024 TTATTGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (30 bp):
TGTGTCACACACGGCCTACTCACACAGCCA
Found at i:13857178 original size:15 final size:16
Alignment explanation
Indices: 13857158--13857187 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13857148 AAGTTATTTT
13857158 TATTTTAGCT-TATTG
1 TATTTTAGCTATATTG
13857173 TATTTTAGCTATATT
1 TATTTTAGCTATATT
13857188 AGACAATCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.23, C:0.07, G:0.10, T:0.60
Consensus pattern (16 bp):
TATTTTAGCTATATTG
Found at i:13858830 original size:41 final size:42
Alignment explanation
Indices: 13858769--13858901 Score: 162
Period size: 42 Copynumber: 3.2 Consensus size: 42
13858759 AAATGGTTTT
*
13858769 ATAAGTTATGTATCAGTGAAGCTCCCCT-CGTGAGCTT-AGTG
1 ATAAGTTGTGTATCAGTGAAGCT-CCCTACGTGAGCTTAAGTG
* * *
13858810 ATAAGTTGTGTATCAATGAAGCTCCCTACATGAGCTTAAGGG
1 ATAAGTTGTGTATCAGTGAAGCTCCCTACGTGAGCTTAAGTG
* * * *
13858852 AAAAGTTGTGTGTCAGCGAAGCTCCCTGCGTGAGCTTAAGTG
1 ATAAGTTGTGTATCAGTGAAGCTCCCTACGTGAGCTTAAGTG
*
13858894 ACAAGTTG
1 ATAAGTTG
13858902 AATGTCAGCA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 4 0.05
41 29 0.37
42 45 0.58
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
ATAAGTTGTGTATCAGTGAAGCTCCCTACGTGAGCTTAAGTG
Found at i:13858873 original size:42 final size:41
Alignment explanation
Indices: 13858771--13858919 Score: 147
Period size: 42 Copynumber: 3.6 Consensus size: 41
13858761 ATGGTTTTAT
* * *
13858771 AAGTTATGTATCAGTGAAGCTCCCCTCGTGAGCTT-AGTGAT
1 AAGTTGTGTATCAGCGAAGCT-CCCTCGTGAGCTTAAGTGAA
** * *
13858812 AAGTTGTGTATCAATGAAGCTCCCTACATGAGCTTAAGGGAA
1 AAGTTGTGTATCAGCGAAGCTCCCT-CGTGAGCTTAAGTGAA
* *
13858854 AAGTTGTGTGTCAGCGAAGCTCCCTGCGTGAGCTTAAGTGAC
1 AAGTTGTGTATCAGCGAAGCTCCCT-CGTGAGCTTAAGTGAA
** * *
13858896 AAGTTGAATGTCAGCAAAGCTCCC
1 AAGTTGTGTATCAGCGAAGCTCCC
13858920 CATGCGAGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 4 0.04
41 27 0.30
42 60 0.66
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
AAGTTGTGTATCAGCGAAGCTCCCTCGTGAGCTTAAGTGAA
Found at i:13861994 original size:25 final size:25
Alignment explanation
Indices: 13861977--13862034 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
13861967 AAGCTCCTCT
13861977 GAGCTGAATAACGATAAGCTCATAC
1 GAGCTGAATAACGATAAGCTCATAC
* *
13862002 GAGCTGAGTATCGATAAGCTCATAC
1 GAGCTGAATAACGATAAGCTCATAC
13862027 GAGCTGAA
1 GAGCTGAA
13862035 ATCGGTAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (25 bp):
GAGCTGAATAACGATAAGCTCATAC
Found at i:13865922 original size:29 final size:30
Alignment explanation
Indices: 13865889--13865951 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
13865879 TAACATAATG
*
13865889 TTTAAATA-CAAGATAAACATTAAATTTAA
1 TTTAAATATCAAGATAAACATTAAAATTAA
* *
13865918 TTT-AATATTAAGATAAATATTAAAATTAA
1 TTTAAATATCAAGATAAACATTAAAATTAA
*
13865947 ATTAA
1 TTTAA
13865952 TATTAAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.14
29 23 0.82
30 1 0.04
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (30 bp):
TTTAAATATCAAGATAAACATTAAAATTAA
Found at i:13865945 original size:18 final size:17
Alignment explanation
Indices: 13865919--13865958 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
13865909 TAAATTTAAT
*
13865919 TTAATATTAAGATAAATA
1 TTAAAATTAA-ATAAATA
*
13865937 TTAAAATTAAATTAATA
1 TTAAAATTAAATAAATA
13865954 TTAAA
1 TTAAA
13865959 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
TTAAAATTAAATAAATA
Found at i:13865952 original size:29 final size:29
Alignment explanation
Indices: 13865898--13865961 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
13865888 GTTTAAATAC
* *
13865898 AAGATAAACATTAAATTTAATTTAATATT
1 AAGATAAACATTAAAATTAAATTAATATT
*
13865927 AAGATAAATATTAAAATTAAATTAATATT
1 AAGATAAACATTAAAATTAAATTAATATT
13865956 AA-ATAA
1 AAGATAA
13865962 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (29 bp):
AAGATAAACATTAAAATTAAATTAATATT
Found at i:13865975 original size:25 final size:24
Alignment explanation
Indices: 13865919--13865975 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
13865909 TAAATTTAAT
13865919 TTAATATTAAGATAAATATTAAAA
1 TTAATATTAAGATAAATATTAAAA
*
13865943 TTAA-ATTAATATTAAATAATTAAAA
1 TTAATATTAAGA-TAAAT-ATTAAAA
13865968 -TAATATTA
1 TTAATATTA
13865976 TTTGTTTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.21
24 12 0.41
25 11 0.38
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
TTAATATTAAGATAAATATTAAAA
Found at i:13870845 original size:18 final size:17
Alignment explanation
Indices: 13870814--13870864 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
13870804 TTAGAATATA
* *
13870814 AAAAAATATTAAAAAGTG
1 AAAAAATA-GAAAAAATG
13870832 AAAAAATAGAAAAATATG
1 AAAAAATAGAAAAA-ATG
13870850 AAAAAA-AGAAAAAAT
1 AAAAAATAGAAAAAAT
13870865 TTAAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 12 0.40
18 16 0.53
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.16
Consensus pattern (17 bp):
AAAAAATAGAAAAAATG
Found at i:13870871 original size:26 final size:26
Alignment explanation
Indices: 13870815--13870864 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13870805 TAGAATATAA
* **
13870815 AAAAATATTAAAAAGTGAAAAAATAG
1 AAAAATATGAAAAAAAGAAAAAATAG
13870841 AAAAATATGAAAAAAAGAAAAAAT
1 AAAAATATGAAAAAAAGAAAAAAT
13870865 TTAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (26 bp):
AAAAATATGAAAAAAAGAAAAAATAG
Found at i:13872358 original size:129 final size:129
Alignment explanation
Indices: 13872123--13872374 Score: 423
Period size: 129 Copynumber: 2.0 Consensus size: 129
13872113 TCCGACAAGA
* *
13872123 TGAAGAGACTACCATGGTGCAGTTTTTGGATGGCTTGAACGTTTCAATAGCTAATGCAACATCTT
1 TGAAGAGACTACCATGGTGCAGTTTGTGGATGGCTTGAACGTTTCAATAGCCAATGCAACATCTT
**
13872188 CAAAAATGTTAATCTCGTCCATTTGGTGCATCACAAAATTATAGAGGTACGAGTTCTACCATGG
66 CAAAAACATTAATCTCGTCCATTTGGTGCATCACAAAATTATAGAGGTACGAGTTCTACCATGG
* * *
13872252 TGAAGAGACTACCATTGTGCAGTTTGTGGATGGCTTGAACGTTTCAATAGCCAATGTAACATTTT
1 TGAAGAGACTACCATGGTGCAGTTTGTGGATGGCTTGAACGTTTCAATAGCCAATGCAACATCTT
* *
13872317 CAATAACATTAATCTCGTCCATTTGGTGCATCACAATATTATAGAGGTACGAGTTCTA
66 CAAAAACATTAATCTCGTCCATTTGGTGCATCACAAAATTATAGAGGTACGAGTTCTA
13872375 ATTCTACTTT
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 114 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (129 bp):
TGAAGAGACTACCATGGTGCAGTTTGTGGATGGCTTGAACGTTTCAATAGCCAATGCAACATCTT
CAAAAACATTAATCTCGTCCATTTGGTGCATCACAAAATTATAGAGGTACGAGTTCTACCATGG
Found at i:13880144 original size:18 final size:18
Alignment explanation
Indices: 13880118--13880160 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
13880108 TAAATATTAA
*
13880118 TTCACTTTCATATAACAC
1 TTCACTTTCATAAAACAC
*
13880136 TTTACTTTCATAAAACAC
1 TTCACTTTCATAAAACAC
13880154 TTCACTT
1 TTCACTT
13880161 AATATTTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.42
Consensus pattern (18 bp):
TTCACTTTCATAAAACAC
Found at i:13881358 original size:41 final size:41
Alignment explanation
Indices: 13881242--13881359 Score: 218
Period size: 41 Copynumber: 2.9 Consensus size: 41
13881232 TTAATTTAAA
*
13881242 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
13881284 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
13881325 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGC
13881360 TTATAATATA
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
41 71 0.95
42 4 0.05
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:13887745 original size:41 final size:41
Alignment explanation
Indices: 13887624--13887734 Score: 195
Period size: 41 Copynumber: 2.7 Consensus size: 41
13887614 TTAATTTAAA
* *
13887624 CAGATTCACCGGCACTTAGCCTACTAGGCTTATAACCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
13887666 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
13887707 CAGATCACCGGCACTTAGCCTGCTAGGC
1 CAGATCACCGGCACTTAGCCTGCTAGGC
13887735 GCTAAGCCTG
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 63 0.94
42 4 0.06
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:13889712 original size:37 final size:37
Alignment explanation
Indices: 13889655--13889760 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
13889645 TATGATCACT
*
13889655 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
13889690 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
*
13889727 TATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
13889761 GAAGCTATCA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 6 0.09
36 4 0.06
37 54 0.84
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:13889802 original size:52 final size:52
Alignment explanation
Indices: 13889723--13889841 Score: 193
Period size: 52 Copynumber: 2.2 Consensus size: 52
13889713 TAAGTGTAGC
* *
13889723 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
13889776 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
13889828 CACTTTGTCACTTG
1 CACTTT-TCACTTG
13889842 ATCAGAAGTA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
52 46 0.74
53 16 0.26
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:13893859 original size:17 final size:17
Alignment explanation
Indices: 13893837--13893871 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13893827 ACGAAGATAC
13893837 AACAGAAAGTTATACCT
1 AACAGAAAGTTATACCT
*
13893854 AACAGAATGTTATACCT
1 AACAGAAAGTTATACCT
13893871 A
1 A
13893872 TGTACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (17 bp):
AACAGAAAGTTATACCT
Found at i:13895150 original size:15 final size:15
Alignment explanation
Indices: 13895125--13895157 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13895115 CTTCTTCTTC
13895125 TTTCTTTTTGTTTCGT
1 TTTCTTTTTGTTTC-T
13895141 TTTC-TTTTGTTTCT
1 TTTCTTTTTGTTTCT
13895155 TTT
1 TTT
13895158 ACATTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 9 0.53
16 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.09, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTGTTTCT
Found at i:13895459 original size:57 final size:57
Alignment explanation
Indices: 13895371--13895484 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
13895361 TGGTTCGTAA
13895371 GGCATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTCCCCAAATTTTTTATATT
1 GGCATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTCCCCAAATTTTTTATATT
* *
13895428 GGCATTTACTCTTCTGGTGAGTGAGGATTTTAGTAATTTCCCCAAATTTTTTATATT
1 GGCATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTCCCCAAATTTTTTATATT
13895485 CCTCTATTTC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.45
Consensus pattern (57 bp):
GGCATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTCCCCAAATTTTTTATATT
Found at i:13896212 original size:804 final size:803
Alignment explanation
Indices: 13894658--13896228 Score: 2129
Period size: 804 Copynumber: 2.0 Consensus size: 803
13894648 TACCTCCTAA
* * * * * *
13894658 AATTTTCCCAAATTATTTACGTTCCTCTGTTTCCATTACTTTCATTTCTTTTTTCCATTTTCTGT
1 AATTTCCCCAAATTATTTACATTCCTCTATTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGT
* * *
13894723 TCATTTGACGTTATTTTTTCTTCTTATTTCTTTCTGTTTCATTTTTCTTTCATTTCTTTTACATT
66 TCATCTAACGTTATTTTTTCTTCTTATTTCTTTCTGTCTCATTTTTCTTTCATTTCTTTTACATT
* * ** * *
13894788 TATTGTCATATTCCCTTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGTCGACTTATCTTTTATT
131 TATTGTCATATTCCCTTGTTGTCATCTCTTGCTATTATTTCTTCATTACCGACCTATCTTCTATT
*
13894853 GTGCCACCATTTAGACTGCATTGGTGTAATTAATAAACTCTTTAGGTAAGTATAATTCGTTAGCT
196 GTGCCACCATTTAGACT-CATTGGTGTAATTAATAAACTCTTTAAGTAAGTATAATTCGTTAGCT
* * **
13894918 TCATTTTATGCTGGTTGTTTTTAAATCTTTAGAAGGTATTTTGGTTTTATTAGTTGTGATTTTGC
260 TCATTTTAGGCTGGTTGTTCTTAAATCTTTAGAAGGTATTTTGGTTTTATTAAATGTGATTTTGC
* * * * * *
13894983 TAGGAGTGGTTCATGAGGCGTTTACTCTTCTGACGAGTGAGTATTTTAGTAGTTTTCCCAAATTT
325 TAGGAGTGATTCATGAGGCATTTACTCTTCTGACGAGTGAGGATTTTAGCAATTTCCCCAAATTT
* *
13895048 TTTACGTTCCTCTCTTTCCACTACTTCCATTACGTTTTCCCTTTTTTTGTTCATCTGACGTTATT
390 TTTACGTTCCTCTCTTTCCACTACTTCCATTACGTTTTCCCATTTTCTGTTCATCTGACGTTATT
* * * *
13895113 TTCTTCTTCTTCTTTCTTTTTGTTTCGTTTTCTTTTGTTTCTTTTACATTTGTTGCCTTATTCCC
455 TTCTTCTTCTTCTTTCTTTCTGTTTCATTTTCTTTTATTTCTTTTACATTTGTTGCCATATTCCC
* * *
13895178 CTATTGTCGTCTCTTGCTACTATTACTTCATTGCCTACCCATCTTCTGTTGTGCCGACATTTAGA
520 CTATTCTCGTCTCTTGCTACTATTACTTCATTGCCAACCCATCTTCTCTTGTGCCGACATTTAGA
* * * * *
13895243 CTACGTTGGTGTTCTTAAAATCTTCAGGTAAGAATAATTCGTTCGTTTCATTTTAGGGTGGTTGT
585 CTACATCGGTGTTATTAAAATCTTCAGGTAAGAATAATTCATTAGTTTCATTTTAGGGTGGTTGT
*
13895308 CATGATATCATTGGAAGGTCTTTTGATTTCATTAGTTGTGATTTTACTAAGGCTGGTTCGTAAGG
650 CATGATATCATTGGAAGGCCTTTTGATTTCATTAGTTGTGATTTTACTAAGGCTGGTTCGTAAGG
* * *
13895373 CATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTCCCCAAATTTTTTATATTGGCATTTACT
715 CATTTACTCTTCTAGCGAATGAAGATTTTAGCAATTTCCCCAAATTTTTTATATTGGCATTTACT
13895438 CTTCTGGTGAGTGAGGATTTTAGT
780 CTTCTGGTGAGTGAGGATTTTAGT
* * *
13895462 AATTTCCCCAAATTTTTTATATTCCTCTATTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGT
1 AATTTCCCCAAATTATTTACATTCCTCTATTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGT
* * * *
13895527 TCCTCTAATGTTATTTTCTTCTTCTTCTTCTTTCTTTCTGTCTCATTTTTCTTTCGTTTCTTTTA
66 TCATCTAACGTTA--TT-TT-TTCTTCTTATTTCTTTCTGTCTCATTTTTCTTTCATTTCTTTTA
*
13895592 CATTTGTTGTCATATTCCCCTT-TTGTCATCTCTTGCTATTATTTCTTCATTACCGACCTATCTT
127 CATTTATTGTCATATT-CCCTTGTTGTCATCTCTTGCTATTATTTCTTCATTACCGACCTATCTT
* ** * *
13895656 CTGTTGTGCCGTCATTTAGACT-ATGTCGGTGTTATT-A-AAA-TCTTTAAGTAAGTATAATTTG
191 CTATTGTGCCACCATTTAGACTCAT-T-GGTGTAATTAATAAACTCTTTAAGTAAGTATAATTCG
* * * * * * * *
13895717 TTTGTTTCATTTTAGGGTGGTTG-TCTTGATTCTTTGGGAGGTCTTTTGGTTTTATTAAATGTGA
254 TTAGCTTCATTTTAGGCTGGTTGTTCTTAAATCTTTAGAAGGTATTTTGGTTTTATTAAATGTGA
** * *
13895781 TTTTGCTA-GAGGTGATTTGTGAGGCATTTACTCTTTTGGCGAGTGAGGATTTTAGCAATTTCCC
319 TTTTGCTAGGA-GTGATTCATGAGGCATTTACTCTTCTGACGAGTGAGGATTTTAGCAATTTCCC
* * * * * *
13895845 CAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTGT
383 CAAATTTTTTACGTTCCTCTCTTTCCACTACTTCCATTACGTTTTCCCATTTTCTGTTCATCTGA
* * *
13895910 TGTTATTTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTCTTTTATTTCTTTTATATTTGTTGCCA
448 CGTTATTTTCTTCTTCTTCTTTCTTTCTGTTTCATTTTCTTTTATTTCTTTTACATTTGTTGCCA
* * * * *
13895975 TATTCCCTTCTTCTCGTCTCTTGCTATCGT-TT-CTTCATTGCCAACCTATTTTCTCTTTTGCCG
513 TATTCCCCTATTCTCGTCTCTTGCTA-C-TATTACTTCATTGCCAACCCATCTTCTCTTGTGCCG
*
13896038 CCATTTAGACTACATCGGTGTTATTAAAATCTTCAGGTAA-ATATAATTCATTAGTTTCATTTTA
576 ACATTTAGACTACATCGGTGTTATTAAAATCTTCAGGTAAGA-ATAATTCATTAGTTTCATTTTA
* * * * *
13896102 GGGTGGTTGTCTTGATATCTTTGGAAGGCCTTTTGGTTTTATTAGTTGTGATTTTGCTAGAGG-T
640 GGGTGGTTGTCATGATATCATTGGAAGGCCTTTTGATTTCATTAGTTGTGATTTTACTA-AGGCT
* *
13896166 GGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAAGATTTTAGCAATTTCCCCAAATTTTTTAT
704 GGTTCGTAAGGCATTTACTCTTCTAGCGAATGAAGATTTTAGCAATTTCCCCAAATTTTTTAT
13896229 GTTCCTCTCT
Statistics
Matches: 664, Mismatches: 91, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
803 3 0.00
804 481 0.72
805 44 0.07
806 8 0.01
807 4 0.01
808 119 0.18
809 5 0.01
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (803 bp):
AATTTCCCCAAATTATTTACATTCCTCTATTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGT
TCATCTAACGTTATTTTTTCTTCTTATTTCTTTCTGTCTCATTTTTCTTTCATTTCTTTTACATT
TATTGTCATATTCCCTTGTTGTCATCTCTTGCTATTATTTCTTCATTACCGACCTATCTTCTATT
GTGCCACCATTTAGACTCATTGGTGTAATTAATAAACTCTTTAAGTAAGTATAATTCGTTAGCTT
CATTTTAGGCTGGTTGTTCTTAAATCTTTAGAAGGTATTTTGGTTTTATTAAATGTGATTTTGCT
AGGAGTGATTCATGAGGCATTTACTCTTCTGACGAGTGAGGATTTTAGCAATTTCCCCAAATTTT
TTACGTTCCTCTCTTTCCACTACTTCCATTACGTTTTCCCATTTTCTGTTCATCTGACGTTATTT
TCTTCTTCTTCTTTCTTTCTGTTTCATTTTCTTTTATTTCTTTTACATTTGTTGCCATATTCCCC
TATTCTCGTCTCTTGCTACTATTACTTCATTGCCAACCCATCTTCTCTTGTGCCGACATTTAGAC
TACATCGGTGTTATTAAAATCTTCAGGTAAGAATAATTCATTAGTTTCATTTTAGGGTGGTTGTC
ATGATATCATTGGAAGGCCTTTTGATTTCATTAGTTGTGATTTTACTAAGGCTGGTTCGTAAGGC
ATTTACTCTTCTAGCGAATGAAGATTTTAGCAATTTCCCCAAATTTTTTATATTGGCATTTACTC
TTCTGGTGAGTGAGGATTTTAGT
Found at i:13896225 original size:372 final size:370
Alignment explanation
Indices: 13895428--13897292 Score: 1693
Period size: 373 Copynumber: 4.9 Consensus size: 370
13895418 TTTTTATATT
* * * *
13895428 GGCATTTACTCTTCTGGTGAGTGAGGATTTTAGTAATTTCCCCAAATTTTTTATATTCCTCTATT
1 GGCATTTACTCTTCTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
13895493 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTATTTTCTTCTTCTTCTTCT
66 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTA-TTT-TT-TTCTTCTTCT
* *
13895558 TTCTTTCTGTCTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCCCCTTTTGTCATCT
128 TTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATT-CCCTTTT-TCGTCT
* * * **
13895623 CTTGCTATTATTTCTTCATTACCGACCTATCTTCTGTTGTGCCGTCATTTAGACTATGTCGGTGT
191 CTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGTCATTTAGACTACATCGGTGT
* * * *
13895688 TATTAAAATCTTTAAGTAAGTATAATTTGTTTGTTTCATTTTAGGGTGGTTGTCTTGAT-TCTTT
256 TATTAAAATC-TTCAGTAAATATAATTCGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTT
* ** *
13895752 GGGAGGTCTTTTGGTTTTATTAAATGTGATTTTGCTAGAGGTGATTTGTGA
320 GGAAGGTCTTTTGGTTTTATTAGTTGTGATTTTGCTAGAGGTGATTCGTGA
* *
13895803 GGCATTTACTCTTTTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCTTCTCTT
1 GGCATTTACTCTTCTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
* **
13895868 TCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTGTTGTTATTTTTTTCTTCTTCTTTC
66 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTATTTTTTTCTTCTTCTTTC
** * *
13895933 TTTCTGTTTCA-TTTTCTTTTATTTCTTTTATATTTGTTGCCATATTCCCTTCTTCTCGTCTCTT
131 TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCCCTT-TT-TCGTCTCTT
* * * * * *
13895997 GCTATCGTTTCTTCATTGCCAACCTATTTTCTCTTTTGCCGCCATTTAGACTACATCGGTGTTAT
194 GCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGTCATTTAGACTACATCGGTGTTAT
*
13896062 TAAAATCTTCAGGTAAATATAATTCATTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTGGA
259 TAAAATCTTCA-GTAAATATAATTCGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTGGA
* *
13896127 AGGCCTTTTGGTTTTATTAGTTGTGATTTTGCTAGAGGTGGTTCGTGA
323 AGGTCTTTTGGTTTTATTAGTTGTGATTTTGCTAGAGGTGATTCGTGA
* *
13896175 GGCATTTACTCTTCTAGCGAGTGAAGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
1 GGCATTTACTCTTCTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
* * *
13896240 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTATTTTTTTATTTTTCTTTC
66 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTATTTTTTTCTTCTTCTTTC
13896305 TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCACCTGTTTTCGTCTCTT
131 TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTC-CCT-TTTTCGTCTCTT
* * * * *
13896370 ACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTTAGACTGCTTCGGTGTTAT
194 GCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGTCATTTAGACTACATCGGTGTTAT
* * ** * *
13896435 CAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGTTGTCTTGATATCTTTGAA
259 TAAAATCTTCAGTAAA-TATAATTCGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTGGA
* * ** * *
13896500 AGGTCTTTTGGTTTCATTAGTTGTTATTAAAAATGGAATTATTTTTGCTAAATCCTCATGT-GTC
323 AGGTCTTTTGGTTTTATTAGTTG----------T-G----A-TTTTGCTAGA-GGTGAT-TCGTG
13896564 A
370 A
** * * * * * * * * * ** **** **
13896565 CCCATCTAGTGGTATTTGG-G-TTGGATTTGAACTTTAGAAAATTATCCAAA-AAAATA-CCTCC
1 GGCATTTACT-CT-TCTGGCGAGT-GA---GGATTTTAGCAATTTCCCCAAATTTTTTATGTTCC
*** * * * ** * * ** * *
13896626 TAAAATTTACC-CAAATT--TTTTACGTTCCTCTC-TTTCCACTACTTCCAT-TTATTTTCCCAT
60 T-CTCTTT-CCACTACTTCCATTT-C-TTTTTCCCATTT---TTTGTTCC-TCTAATGTT---A-
* * * * *
13896686 TTTTTGTTCGTTTGACGTTATTTTTTTCTTCTTCTTTCTTTCTATTTCATTTTTCTTTCATTTCT
113 TTTTT-TTC--TT--C-----TTCTTTC-T-TTCTGT--TTC-ATTT-TTC----TTTCGTTTCT
* * * * *
13896751 TTTACATTTGTTGCCATATTCCTTTGTTATCGTCTCTTGCTACTATTTCTTCATTGCCGACTTAT
158 TTTACATTTGTTGTCATATTCCCTT-TT-TCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTAT
** * * * * * *
13896816 CTTCTATTGTGCCACCATTTAAACTGCGTTGGTGTTATTATTAAAATATTCAGGTAAGTATAATT
221 CTTCTATTGTGCCGTCATTTAGACTACATCGGTG---TTATTAAAATCTTCA-GTAAATATAATT
* * * * * * * **
13896881 TGTTAGTTTCATTTTAGGGTGGTTATTTTTAAATCTTTGGAAGGTATTTTTGTTACATTAGTTGT
282 CGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTTATTAGTTGT
* * *
13896946 GATTTTGCTAGGGGTGGTTCATGA
347 GATTTTGCTAGAGGTGATTCGTGA
* * * * *
13896970 GGCATTTACTCTTCTAGCGAGTGAGTATTTCAGTAATTTCCCTAAATTTTTTATGTTCCTCTCTT
1 GGCATTTACTCTTCTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
* * *
13897035 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTATTTTTTTATTTTTCTTTC
66 TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTATTTTTTTCTTCTTCTTTC
13897100 TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCACCTGTTTTCGTCTCTT
131 TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTC-CCT-TTTTCGTCTCTT
* * * * *
13897165 ACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTTAGACTGCTTCGGTGTTAT
194 GCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGTCATTTAGACTACATCGGTGTTAT
* * ** *
13897230 CAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGTTGTCTTGATATCTTTG
259 TAAAATCTTCAGTAAA-TATAATTCGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTG
13897293 AAAGTTCCCT
Statistics
Matches: 1182, Mismatches: 226, Indels: 166
0.75 0.14 0.11
Matches are distributed among these distances:
370 8 0.01
371 143 0.12
372 211 0.18
373 222 0.19
374 8 0.01
375 104 0.09
376 88 0.07
377 4 0.00
378 1 0.00
380 1 0.00
381 4 0.00
382 3 0.00
383 1 0.00
384 6 0.01
385 1 0.00
386 6 0.01
388 1 0.00
389 9 0.01
390 12 0.01
391 8 0.01
392 11 0.01
393 16 0.01
394 17 0.01
395 11 0.01
396 6 0.01
397 1 0.00
398 1 0.00
399 6 0.01
400 11 0.01
401 16 0.01
402 16 0.01
403 11 0.01
404 8 0.01
405 11 0.01
406 8 0.01
407 1 0.00
409 6 0.01
410 1 0.00
411 6 0.01
412 1 0.00
413 3 0.00
414 4 0.00
415 1 0.00
417 1 0.00
418 4 0.00
419 88 0.07
422 72 0.06
423 3 0.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (370 bp):
GGCATTTACTCTTCTGGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
TCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAATGTTATTTTTTTCTTCTTCTTTC
TTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCCCTTTTTCGTCTCTTGC
TATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGTCATTTAGACTACATCGGTGTTATTA
AAATCTTCAGTAAATATAATTCGTTAGTTTCATTTTAGGGTGGTTGTCTTGATATCTTTGGAAGG
TCTTTTGGTTTTATTAGTTGTGATTTTGCTAGAGGTGATTCGTGA
Found at i:13896320 original size:21 final size:22
Alignment explanation
Indices: 13896294--13896340 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
13896284 TTATTTTTTT
13896294 ATTTTTCTTTC-TTTCTGTTT-C
1 ATTTTTCTTTCGTTTCT-TTTAC
13896315 ATTTTTCTTTCGTTTCTTTTAC
1 ATTTTTCTTTCGTTTCTTTTAC
13896337 ATTT
1 ATTT
13896341 GTTGTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTCTTTCGTTTCTTTTAC
Found at i:13896323 original size:17 final size:15
Alignment explanation
Indices: 13896301--13896334 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
13896291 TTTATTTTTC
13896301 TTTCTTTCTGTTTCATT
1 TTTCTTTC-GTTTC-TT
13896318 TTTCTTTCGTTTCTT
1 TTTCTTTCGTTTCTT
13896333 TT
1 TT
13896335 ACATTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.03, C:0.18, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTCTTTCGTTTCTT
Found at i:13896742 original size:17 final size:15
Alignment explanation
Indices: 13896714--13896753 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
13896704 TATTTTTTTC
13896714 TTCTTCTTTCTTTCTAT
1 TTCTT-TTTCTTTC-AT
13896731 TTCATTTTTCTTTCAT
1 TTC-TTTTTCTTTCAT
13896747 TTCTTTT
1 TTCTTTT
13896754 ACATTTGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 5 0.23
17 11 0.50
18 2 0.09
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.72
Consensus pattern (15 bp):
TTCTTTTTCTTTCAT
Found at i:13896743 original size:21 final size:22
Alignment explanation
Indices: 13896717--13896759 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
13896707 TTTTTTCTTC
13896717 TTCTTTC-TTTCTATTT-CATTT
1 TTCTTTCATTTCT-TTTACATTT
13896738 TTCTTTCATTTCTTTTACATTT
1 TTCTTTCATTTCTTTTACATTT
13896760 GTTGCCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.70
Consensus pattern (22 bp):
TTCTTTCATTTCTTTTACATTT
Found at i:13896983 original size:795 final size:792
Alignment explanation
Indices: 13895837--13897296 Score: 2449
Period size: 795 Copynumber: 1.8 Consensus size: 792
13895827 GGATTTTAGC
* * * *
13895837 AATTTCCCCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGT
1 AATTTACCCAAATTTTTTACGTTCCTCTCTTTCCACTACTTCCATTTCATTTTCCCATTTTCTGT
** * * *
13895902 TCCTCTGTTGTTATTTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTCTTTTATTTCTTTTATATT
66 TCCTCTGACGTTATTTTTTTCTTCTTCTTTCTTTCTATTTCATTTTCTTTCATTTCTTTTACATT
* * * *
13895967 TGTTGCCATATTCCCTTCTTCTCGTCTCTTGCTATCGTTTCTTCATTGCCAACCTATTTTCTCTT
131 TGTTGCCATATTCCCTTCTTATCGTCTCTTGCTATCATTTCTTCATTGCCAACCTATCTTCTATT
* * * *
13896032 TTGCCGCCATTTAGACTACATCGGTGTTATTAAAATCTTCAGGTAAATATAATTCATTAGTTTCA
196 GTGCCACCATTTAAACTACATCGGTGTTATTAAAATATTCAGGTAAATATAATTCATTAGTTTCA
* * * **
13896097 TTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGCCTTTTGGTTTTATTAGTTGTGATTTTGCTAG
261 TTTTAGGGTGGTTATCTTGAAATCTTTGGAAGGCATTTTGGTTACATTAGTTGTGATTTTGCTAG
* *
13896162 AGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAAG-ATTTTAGCAATTTCCCCAAATTTTT
326 AGGTGGTTCATGAGGCATTTACTCTTCTAGCGAGTG-AGTATTTCAGCAATTTCCCCAAATTTTT
13896226 TATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTATTTT
390 TATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTATTTT
13896291 TTTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCACC
455 TTTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCACC
13896356 TGTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTTAGAC
520 TGTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTTAGAC
13896421 TGCTTCGGTGTTATCAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGTTGTC
585 TGCTTCGGTGTTATCAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGTTGTC
13896486 TTGATATCTTTGAAAGGTCTTTTGGTTTCATTAGTTGTTATTAAAAATGGAATTATTTTTGCTAA
650 TTGATATCTTTGAAAGGTCTTTTGGTTTCATTAGTTGTTATTAAAAATGGAATTATTTTTGCTAA
13896551 ATCCTCATGTGTCACCCATCTAGTGGTATTTGGGTTGGATTTGAACTTTAGAAAATTATCCAAAA
715 ATCCTCATGTGTCACCCATCTAGTGGTATTTGGGTTGGATTTGAACTTTAGAAAATTATCCAAAA
13896616 AAATACCTCCTAA
780 AAATACCTCCTAA
*
13896629 AATTTACCCAAATTTTTTACGTTCCTCTCTTTCCACTACTTCCATTT-ATTTTCCCATTTTTTGT
1 AATTTACCCAAATTTTTTACGTTCCTCTCTTTCCACTACTTCCATTTCATTTTCCCATTTTCTGT
* *
13896693 TCGTTTGACGTTATTTTTTTCTTCTTCTTTCTTTCTATTTCATTTTTCTTTCATTTCTTTTACAT
66 TCCTCTGACGTTATTTTTTTCTTCTTCTTTCTTTCTATTTCA-TTTTCTTTCATTTCTTTTACAT
* * * *
13896758 TTGTTGCCATATTCCTTTGTTATCGTCTCTTGCTA-CTATTTCTTCATTGCCGACTTATCTTCTA
130 TTGTTGCCATATTCCCTTCTTATCGTCTCTTGCTATC-ATTTCTTCATTGCCAACCTATCTTCTA
* * * * **
13896822 TTGTGCCACCATTTAAACTGCGTTGGTGTTATTATTAAAATATTCAGGTAAGTATAATTTGTTAG
194 TTGTGCCACCATTTAAACTACATCGGTG---TTATTAAAATATTCAGGTAAATATAATTCATTAG
* * * *
13896887 TTTCATTTTAGGGTGGTTATTTTTAAATCTTTGGAAGGTATTTTTGTTACATTAGTTGTGATTTT
256 TTTCATTTTAGGGTGGTTATCTTGAAATCTTTGGAAGGCATTTTGGTTACATTAGTTGTGATTTT
* * *
13896952 GCTAGGGGTGGTTCATGAGGCATTTACTCTTCTAGCGAGTGAGTATTTCAGTAATTTCCCTAAAT
321 GCTAGAGGTGGTTCATGAGGCATTTACTCTTCTAGCGAGTGAGTATTTCAGCAATTTCCCCAAAT
13897017 TTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTA
386 TTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTA
13897082 TTTTTTTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATT
451 TTTTTTTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATT
13897147 CACCTGTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTT
516 CACCTGTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTT
13897212 AGACTGCTTCGGTGTTATCAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGT
581 AGACTGCTTCGGTGTTATCAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGT
13897277 TGTCTTGATATCTTTGAAAG
646 TGTCTTGATATCTTTGAAAG
13897297 TTCCCTACAT
Statistics
Matches: 618, Mismatches: 44, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
791 53 0.09
792 140 0.23
794 2 0.00
795 423 0.68
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (792 bp):
AATTTACCCAAATTTTTTACGTTCCTCTCTTTCCACTACTTCCATTTCATTTTCCCATTTTCTGT
TCCTCTGACGTTATTTTTTTCTTCTTCTTTCTTTCTATTTCATTTTCTTTCATTTCTTTTACATT
TGTTGCCATATTCCCTTCTTATCGTCTCTTGCTATCATTTCTTCATTGCCAACCTATCTTCTATT
GTGCCACCATTTAAACTACATCGGTGTTATTAAAATATTCAGGTAAATATAATTCATTAGTTTCA
TTTTAGGGTGGTTATCTTGAAATCTTTGGAAGGCATTTTGGTTACATTAGTTGTGATTTTGCTAG
AGGTGGTTCATGAGGCATTTACTCTTCTAGCGAGTGAGTATTTCAGCAATTTCCCCAAATTTTTT
ATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGTTATTTTT
TTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGTCATATTCACCT
GTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGTGCTGTCATTTAGACT
GCTTCGGTGTTATCAAAATCTTCAGAAAAGTATAATTCGTTAGTTTTGTTTTATGGTGGTTGTCT
TGATATCTTTGAAAGGTCTTTTGGTTTCATTAGTTGTTATTAAAAATGGAATTATTTTTGCTAAA
TCCTCATGTGTCACCCATCTAGTGGTATTTGGGTTGGATTTGAACTTTAGAAAATTATCCAAAAA
AATACCTCCTAA
Found at i:13897115 original size:21 final size:22
Alignment explanation
Indices: 13897089--13897135 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
13897079 TTATTTTTTT
13897089 ATTTTTCTTTC-TTTCTGTTT-C
1 ATTTTTCTTTCGTTTCT-TTTAC
13897110 ATTTTTCTTTCGTTTCTTTTAC
1 ATTTTTCTTTCGTTTCTTTTAC
13897132 ATTT
1 ATTT
13897136 GTTGTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTCTTTCGTTTCTTTTAC
Found at i:13897118 original size:17 final size:15
Alignment explanation
Indices: 13897096--13897129 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
13897086 TTTATTTTTC
13897096 TTTCTTTCTGTTTCATT
1 TTTCTTTC-GTTTC-TT
13897113 TTTCTTTCGTTTCTT
1 TTTCTTTCGTTTCTT
13897128 TT
1 TT
13897130 ACATTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.03, C:0.18, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTCTTTCGTTTCTT
Found at i:13897521 original size:283 final size:286
Alignment explanation
Indices: 13897007--13897579 Score: 854
Period size: 283 Copynumber: 2.0 Consensus size: 286
13896997 TTTCAGTAAT
* *
13897007 TTCCCTAAATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTTGTTCC
1 TTCCCTAAATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTTTTGTTCC
*
13897072 TCTAACGTTATTTTTTTATTTTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTG
66 TCTAACGTTA----TTTATTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTG
* * * *
13897137 TTGTCATATTCACCTGTTTTCGTCTCTTACTATTGTTTCTTTATTGCCGACCTATCTTCTATTGT
127 TTGCCATATTCACCTGTTATCGTCTCTTACTACTGTTTCTTCATTGCCGACCTATCTTCTATTGT
* * *
13897202 GCTGTCATTTAGACTGCTTCGGTGTTATCAAAATCTTC-AGAAAAGTATAATTCGTTAGTTTTGT
192 GCTGACATTTAGACTACTTCGGTGTTATCAAAATCTTCTAG-AAAGTATAATTCGTTAGTTTTCT
* *
13897266 TTTATGGTGGTTGTCTTGATATCTTTGAAAG
256 TTTAGGGTGGTTGTCTTGATATCGTTGAAAG
*
13897297 TTCCCTACATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTTTTGTTCC
1 TTCCCTAAATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTTTTGTTCC
*
13897362 TCTAACGTTA-TT-TTCTTCTTTCTTTCTGTTTCGTTTTAT-TTT-GTTTCTTTTACATTTGTTG
66 TCTAACGTTATTTATTCTTCTTTCTTTCTGTTTCATTTT-TCTTTCGTTTCTTTTACATTTGTTG
* *
13897423 CCATATTCCCCTGTTATCGTCTCTTGCTACTGTTTCTTCATTGCCGACCTATCTTCTATTGTGGC
130 CCATATTCACCTGTTATCGTCTCTTACTACTGTTTCTTCATTGCCGACCTATCTTCTATTGT-GC
* * *
13897488 -GACATTTAGATTACGTT-GGTGTTATTAAAATCTTCTAGTAAGTATAATTCGTTAGTTTTCTTT
194 TGACATTTAGACTAC-TTCGGTGTTATCAAAATCTTCTAGAAAGTATAATTCGTTAGTTTTCTTT
13897551 TAGGGTGGTTGTCTTGATATCGTTGAAAG
258 TAGGGTGGTTGTCTTGATATCGTTGAAAG
13897580 GTCTTTTGGT
Statistics
Matches: 260, Mismatches: 19, Indels: 15
0.88 0.06 0.05
Matches are distributed among these distances:
283 153 0.59
284 32 0.12
285 3 0.01
290 72 0.28
ACGTcount: A:0.16, C:0.20, G:0.12, T:0.52
Consensus pattern (286 bp):
TTCCCTAAATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTTTTGTTCC
TCTAACGTTATTTATTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGC
CATATTCACCTGTTATCGTCTCTTACTACTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCTG
ACATTTAGACTACTTCGGTGTTATCAAAATCTTCTAGAAAGTATAATTCGTTAGTTTTCTTTTAG
GGTGGTTGTCTTGATATCGTTGAAAG
Found at i:13897772 original size:17 final size:15
Alignment explanation
Indices: 13897746--13897785 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
13897736 TCTTTTCTTC
13897746 TTCTTCTTTCTTTCTGT
1 TTCTT-TTTCTTTC-GT
13897763 TTCATTTTTCTTTCGT
1 TTC-TTTTTCTTTCGT
13897779 TTCTTTT
1 TTCTTTT
13897786 ACATTTGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 5 0.23
17 11 0.50
18 2 0.09
ACGTcount: A:0.03, C:0.20, G:0.05, T:0.72
Consensus pattern (15 bp):
TTCTTTTTCTTTCGT
Found at i:13897775 original size:21 final size:22
Alignment explanation
Indices: 13897749--13897791 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
13897739 TTTCTTCTTC
13897749 TTCTTTC-TTTCTGTTT-CATTT
1 TTCTTTCGTTTCT-TTTACATTT
13897770 TTCTTTCGTTTCTTTTACATTT
1 TTCTTTCGTTTCTTTTACATTT
13897792 GTTGCCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.07, C:0.19, G:0.05, T:0.70
Consensus pattern (22 bp):
TTCTTTCGTTTCTTTTACATTT
Found at i:13898223 original size:371 final size:370
Alignment explanation
Indices: 13897305--13902584 Score: 4032
Period size: 370 Copynumber: 14.0 Consensus size: 370
13897295 AGTTCCCTAC
* * *
13897305 ATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTTTTGTTCCTCTAACGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
*
13897370 TA----TT-TTCTTCTTTCTTTCTGTTTCGTTTTAT-TTT-GTTTCTTTTACATTTGTTGCCATA
66 TATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTT-TCTTTCGTTTCTTTTACATTTGTTGCCATA
* * *
13897428 TTCCCCTGTTATCGTCTCTTGCTACTGTTTCTTCATTGCCGACCTATCTTCTATTGTGGCGA-CA
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGT-GCCACCA
* *
13897492 TTTAGATTACGTTGGTGTTATTAAAATCTTCTA-GTAAGTATAATTCGTTAGTTTTCTTTTAGGG
194 TTTAGACTGCGTTGGTGTTATTAAAATCTTC-AGGTAAGTATAATTCGTTAG-TTTCTTTTAGGG
* *
13897556 TGGTTGTCTTGATATCGTTGAAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTT
257 TGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTA-GGGTGGTT
* * * * *
13897621 CATGAGGCATTTACTCTTTTAGCGAGTAAAGATTTTAGCAATTTTCCCAA
321 CGTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * *** * * *
13897671 ATTTTTTATATTTCTCTCTTTCTGTTGCTTCCATTTCTTTTTCCCATTTTATGTTCGTCTAACGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
*
13897736 TCTTTTCTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * * * *
13897801 TTCCTCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTTCCGATCAATCTTCTGTTGTGCTACCAT
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCAT
* * * * * *
13897866 TTTGATTGTGTTGGTGTTATTAAAATCATCAAGTAAGTATAATTTGTTAGTTTCATTTTAGGGTG
195 TTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGTG
* * ** * ** * ** *
13897931 GTTATCTTGATATCTTTGGAAGGCCTTTTACTATCATTAGTACTAATTTTTTTAGGGTGATTCGT
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGTGGTTCGT
* * *
13897996 GAGGCATTTACTCTTCTGGTGAATGAGGATTTTAGCAATTTTCCTAA
324 GAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * * * *
13898043 ATTTTTTATGTTCCTCTCTTTCCACAACTTCTATTTCTTTTTCCCCTTTTATGTTCCTCTAATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
* * * *
13898108 TATTTTTTCTTCTTCTTCCTTTTTGTTTCATTTTTCCTTCGTTTCTTTTACATTTGTTGCTATAT
66 TATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATAT
** * * * * *
13898173 TCCTTTGTTGTCATCTCTTACTATTGTTTCTTTATTGCTGACATATCTTCTATTGTGCCACCATT
131 TCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCATT
* * * * *
13898238 TAGACTGTGTTAGTGTTCTTAAAATCATT-AGGTAAGTATAATTCGTTAGTTTCGTTTTAGGATA
196 TAGACTGCGTTGGTGTTATTAAAATC-TTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGTG
* * * *
13898302 GTTGTCTTGATATCATTGGAAGGTCTTTTGCTTTCATTAGTTGTGATTTTGCTAGGGAGGTTCAT
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGTGGTTCGT
* * * * *
13898367 GAGGCATTTAATCTTTTGGCGAATGAGGATTTTAGCAA-TTTCTCCAA
324 GAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTC-CCAA
* * * * * *
13898414 ATTTTTTATTTTCTTCTCTTTCCACTACTTCAATTTCTTTTTCTCATTCTCTGTTCCTCTAATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
* * *
13898479 TATTTTTTCTTCTTCTTTC-TTCTAGTTTC-GTTTTCTTTTGTTTCTTTTACATTTGTTTCCATA
66 TATTTTTTCTTCTTCTTTCTTTCT-GTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * * * * * ***
13898542 TTCTCCTATTGACGTCTCTTACTATTGTTTCTTCATTACCGACCTATATTCTGTTGTGTTGCCAT
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCAT
** * * *
13898607 TTAGACTGCGTCAGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTTGTTTTAGAGTA
195 TTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGGTG
*
13898672 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAG-TGTTGATTTTGCTAAGGGTGGTTA
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTG-TGATTTTGCT-AGGGTGGTTC
* * * * *
13898736 TTGAGGCATTTAATTTTCTGGTGAGTGAGGATTTTAGCAATTTTCACAA
322 GTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* *
13898785 ATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
** * *
13898850 TATTTTCTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTTATTTCTTTTAAATTTGTTGTCATA
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * *
13898915 TTCCCTTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTTTTATGCCACCAT
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCAT
* *
13898980 TTAGACTGCGTTGGTGTTATTATTAAAATTTTCAGGTAAGTATAATTCATTAGTTTCGTTTTAGG
195 TTAGACTGCGTTGGTG---TTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGG
* * * * *
13899045 GTGGTTGTTTTTAAATCTTTGGAAGGTATTTTGGTTTCTTTAGTTGTGATTTTGCTAGGGGTGGT
256 GTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTA-GGGTGGT
* * * * * * *
13899110 TCATGAGGCTTTTACTCTT-TGGCGAGTGAGTATTTCAGCAATTTCCCCAA
320 TCGTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * * *
13899160 ATCTTTTACGTTCCTCTGTTTCCACTACTTCCATTTCTTTTTCCCATTTT-TGGTTCCTCTGAC-
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCT-GTTCCTCTAACG
* * * *
13899223 TT-TATTTTCTTCTTCTTTATTTATG-TTCTATTTTAT-TTT-GTTTCTTTTACATTTGTTGTCA
65 TTATTTTTTCTTCTTCTTTCTTTCTGTTTC-ATTTT-TCTTTCGTTTCTTTTACATTTGTTGCCA
* * * * *
13899284 TATTCCCCTGTTGACGTCTCTTGCTACTGTTTCTTTATTGCCGACCTATCTTCTGTTGTGCCGCC
128 TATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACC
* * * *
13899349 ATTTAGACTGTGTTGGTGTTATTAAAATCTTTATGTAAGTATAATTCGTTACTTTTCTTTTAGGG
193 ATTTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTA-GTTTCTTTTAGGG
13899414 TGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAG-TGTTGATTTTGCTAGGGGTGGT
257 TGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTG-TGATTTTGCTA-GGGTGGT
* * * *
13899478 TCGTGAGGCGTTTACTTTTCTAATGAGTTAGGATTTTAGCAATTTTCCCAA
320 TCGTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * * *
13899529 ATTTTTTATGTTCCTCTCTTTCCACTAATTCCATTTCTTTTTCCCAGTTTCGGTTTCTCTAACGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
13899594 TATTTTCTTCTTCTTCTTTCTTTCTGTTT--TGTTTTCTTTCGTTTCTTTTACATTTGTTGCCAT
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCAT-TTTTCTTTCGTTTCTTTTACATTTGTTGCCAT
* * * * * * ** *
13899657 ATTCTCCTGTTGTCGTTTCTTGCTATTGCTTCTTCGTTACCGACCTATCTTCTGTTGTGCTGCTA
129 ATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCA
* *
13899722 TTTAGACTGCATTGGTGTTATTAAAATCTTCTGGTAAGTATAATTCGTTAGTTTTCTTTTAGGGT
194 TTTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGGT
* * **
13899787 GGTTGTCTTGATATCTTCTATTGTGCGACCATTTAGACTGTGTTGGTGTTC-TTAAAAT-T-A-T
258 GGTTGTCTTGATA---TC--TT-TG-GA--A---GGTCT-T-TTGGT-TTCATT-AGTTGTGATT
* * ** ** * *
13899848 TAGGTAAGTATAATTCGTTA---ATATT-CT-TT-TAG-G-GTG-GTTG-TCTTA--ATATCTTT
307 TTGCT-AGGGTGGTTCGTGAGGCAT-TTACTCTTCTAGTGAGTGAG--GATTTTAGCA-AT-TTT
**
13899901 -GGAA
366 CCCAA
* * * ** ** * * * * **** * * *
13899905 GGTTTTTTCCT-TTCAT-TAGTTGTAAT-TTTGCTAGGGGTGGTTC-GTGAGGCGTTTACTCTT-
1 -ATTTTTT-ATGTTCCTCTCTTTCCACTACTT-CCA----T--TTCTTTTTCCCATTTTCTGTTC
* ** ** ** ** * *
13899965 CTAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTT-TTTATGTTCTTC-TCTTTCCACTACTTC
57 CT--CTAACG-TTATTTTTTC---TTCTTC---TTTCTTTCTG-T-TTCAT-TTT----T-CTTT
* * * * * * * * **
13900028 CATTTCTTTTTACCATTTTATGTTCCTCTAACGTTATCTTCTTCTTCTTCTTCCTTTCTGTTTTA
105 CGTTTC-TTTTA-CA--TT-TGTTGC-C--A---TA--TTC-CCCTGTT-GTCGTCTCT-TGCTA
* * ** * * * * * * * *
13900093 TT-TTTCTTTCGTTTCTTTTACATTTTTTACCATAT-T-CC-CCTATTGTCGTCTCTTACTATTG
154 TTGTTTC-TTCATTGC--CGACCTATCTT-CTAT-TGTGCCACC-ATT-TAG--AC-TGC-GTTG
* ** * * ** ** * ** **** * * * *
13900154 TTGCTTCATTGCCAACCTGC-CTTCTGT-T-CTGTCGCCA-TTTAGACTACGTTGG-TGCTATTA
208 GTG-TT-ATT-AAAATCTTCAGGTAAGTATAAT-TCGTTAGTTTCTTTTAGGGTGGTTG-TCTTG
* * * * * * * * * **
13900214 AAAT-ATT-CAA-GTATAATTCG---C--TAGTT-T-AATTT--TAGGGTGGTTATCTTAATATC
268 ATATCTTTGGAAGGTCT-TTTGGTTTCATTAGTTGTGATTTTGCTAGGGTGG-T-TCGTGA-GGC
* * ** *** ** * * *
13900267 -TTTGGAAT-GTCTTTTG-GT-TTCATTAGTT-GTGATTTTTCTAG
329 ATTT--ACTCTTCTAGTGAGTGAGGATT--TTAGCAATTTTCCCAA
* * ** ** * * * * * *** ** * *
13900308 GTTGGTTCGTGAGGCGTTTACTTTTCTAGCGAGTAAGGACTTTAGAATTTCCCCAAATTTTTTAT
1 ATT-TTTTATG-TTCCTCT-C-TTTCCA-CTACT-TCCA-TTT--CTTTTTCCC--A--TTTTCT
* * * * *
13900373 GTTCCTCTCTTTCCACTACTTTCATTTCCTTTTCCCATTTTTTGTTCCTCTAACGTTATTTTTTT
53 GTT-C-CTC--T--A--ACGTT-A-TT--TTTT--C-----TTCTT-CT-T-TC--T-TTCTGTT
* *
13900438 TC-TTCTTTCTTTCTGTTTTATTTTCTTTTGTTTTTTTACATTTGTTGCCATATTCCCCTATTAT
93 TCATT-TTTCTTTC-G------TTTC--------TTTTACATTTGTTGCCATATTCCCCTGTTGT
* * * * * * * * *
13900502 CGTCTCTTGCTACTGTTTTTTCGTTACCGACATATTTTCTATTGTGCCGCCATGTAGACTGGGTT
142 CGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCATTTAGACTGCGTT
* *
13900567 GGTGTTATTAAACTCTTTAGGTAAGTATAATTCGTTAGTTTTCTTTTAGGGTGGTTGTCTTGATA
207 GGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGGTGGTTGTCTTGATA
*
13900632 TCTTTGGGAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTCGTGAGGCATTTAC
271 TCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTA-GGGTGGTTCGTGAGGCATTTAC
* * *
13900697 TCTTCTGGCGAGTGAGGATTTTTA-CAA-TTTCCCCA
335 TCTTCTAGTGAGTGAGGA-TTTTAGCAATTTTCCCAA
* * * * *
13900732 TTTTTTTATATTCCTCTCTTTCTACTACTTTCATTT-TGTTTTCCCATTTT-TCTTCCTCTAACG
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCT-TTTTCCCATTTTCTGTTCCTCTAACG
* * * * *
13900795 TCATTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCCTTCGTTTCTATTACATTTGTTGCTATA
65 TTATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
*** * *
13900860 TTCTTTTGTTGTTGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGCCAT
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCAT
* *
13900925 TTAGACTGTGTTGGTGTTATTAAAATCATT-AGGTAAGTATAATTAGTTAGTTTTCTTTTAGGGT
195 TTAGACTGCGTTGGTGTTATTAAAATC-TTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGGT
13900989 GGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTC
258 GGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTA-GGGTGGTTC
* * * *
13901054 GTGAGACGTTTACTTTTCTAGCGAGTGAGGATTTTAGCAA-TTTCCACAA
322 GTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCC-CAA
* * *
13901103 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCAATTTTCAGTTCCTCTAATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
* * * * * *
13901168 TATTTTTTTTTCTTCTTCTTCCATTCTGTTTTATATTTCTTTCGTTTCTTTTACATTTATTTCCA
66 TA---TTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCA
* * * *
13901233 TATTCCCCTGTTATCGTCTCTTTCTATTGTTTCTTCATTGTCGACTTATCTTCTACTT-TGCCAC
128 TATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTA-TTGTGCCAC
* * * *
13901297 CATTTAGACTGCATTGGTGTTCTTAAAATCATT-AGGTAAGTATAATTCATTAATTTCGTTTTAG
192 CATTTAGACTGCGTTGGTGTTATTAAAATC-TTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAG
* * * * *
13901361 GGTGGTTGACTTGATATCTTTAGAAGGTCTTTTGCTTTCATTAGTTGTAATTTTGCTAGAGTGGT
255 GGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGTGGT
* * *
13901426 TCGTGAGGCATTTAGTCTTCTAGTGAGTGAGGATTTTAGCAACTTCCCCAA
320 TCGTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * * *
13901477 ATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCTATTTT-T-TTCCTCTGATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
* * * * *
13901540 TATTTTTTTTCTTCTTTTTTCTTTCTATTT-TTTTTTCTTTTGTTTCTTTTACATTTGTTGTCAT
66 TA--TTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCAT
* * * * * *
13901604 ATTCCCCTGTTGACGCCTCTTGCTATTGTTTCTTCATTGCCGACCTATATTCTGTTGTGCTAGCA
129 ATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCA
* * * * *
13901669 TTTTA-ACTGCATCGGTGTTTTTAAAATCTTCAAGTATGTATAATTCGTTAGTTTCATTTTAGGG
194 -TTTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGG
* * * **
13901733 TGGTTGTTTTGCTATCTTTGGAAGGACTTTTGGTTTCATTAG-TGTTGATTTTTTTAGGGGTGGT
257 TGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTG-TGATTTTGCTA-GGGTGGT
* * * * * *
13901797 TCGTAAGGCGTTTACTTTTCTAGTGAGTAAGGGTTTTAGCAA-TTTCTCAA
320 TCGTGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * *
13901847 ATTTTTTATGTTCCTCTTTTTCCACTACTTCCATTTCTTTTTCCCACTTTCTGTTCCTCTAACTT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
* * **
13901912 TATTTTCTTTTTCTTCTTT-TTTC-ATTTCATTTTGATTTCGTTTCTTTTACATTTGTTGCCATA
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * * * ** * * * *
13901975 TTCCCATGTTTTCATCTCTTGATATTATTTCTTCATTGTAGATCTATCTGCTGTTGTGCCGCCAT
130 TTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCAT
* *
13902040 TTAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCATTAGTTTCATTTTAGGGTG
195 TTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGTG
* * ** * * *
13902105 GTTGTCTTGGTATCTTTGGAAGGTCTTTTGATTTTGTTAGTTATGATTTTGCTAAAGGTGGTTCA
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCT-AGGGTGGTTCG
* ** * * *
13902170 TAAGGTGTTTACTCTTCTAGAGAGTGATGATTTTAGCAA-TTTCCCCA
323 TGAGGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
* * * *
13902217 ATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTGACCTATTTTCTGTTCCTCTGACG
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTT-TCCCATTTTCTGTTCCTCTAACG
* * * **
13902282 TTATTTTTTTCTTCTTCTTTATTTCTGTTTCATTATTCTTTTGTTTCTTTTACATTTGTTATCAT
65 TTA-TTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCAT
* ** * *
13902347 TTTCCCCTGTTGTTATCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTGCCATCA
129 ATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCA
* * * * * *
13902412 TTTAAACTGCATTGGTGTTATTAAAATCCTCAAGTAAGTATAATTTGTTATTTTCATTTTAGGGT
194 TTTAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGT
* * *
13902477 GGTTGTTTTGATATCTTTGGAAGGTTTTTTTGTTTCATTAGTTGTGATTTTGCTAAGGGTGGTTC
258 GGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCT-AGGGTGGTTC
* *
13902542 GTGAGAG-GTTTACTCTTCTGGTGAGTGAGGATTTTAGCAATTT
322 GTGAG-GCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTT
13902585 CTTTTCTCTT
Statistics
Matches: 3918, Mismatches: 738, Indels: 508
0.76 0.14 0.10
Matches are distributed among these distances:
366 56 0.01
367 2 0.00
368 109 0.03
369 105 0.03
370 910 0.23
371 716 0.18
372 401 0.10
373 506 0.13
374 104 0.03
375 305 0.08
376 120 0.03
377 23 0.01
378 9 0.00
379 4 0.00
380 5 0.00
381 11 0.00
382 9 0.00
383 5 0.00
384 16 0.00
385 21 0.01
386 11 0.00
387 9 0.00
388 6 0.00
389 3 0.00
390 6 0.00
391 4 0.00
393 3 0.00
394 3 0.00
395 16 0.00
396 9 0.00
397 5 0.00
398 5 0.00
399 2 0.00
400 9 0.00
401 7 0.00
402 15 0.00
403 8 0.00
404 5 0.00
405 1 0.00
406 5 0.00
407 6 0.00
408 7 0.00
409 8 0.00
410 14 0.00
411 26 0.01
412 8 0.00
413 18 0.00
414 14 0.00
415 23 0.01
416 9 0.00
417 24 0.01
418 18 0.00
419 24 0.01
420 15 0.00
421 19 0.00
422 21 0.01
423 13 0.00
424 19 0.00
425 15 0.00
426 8 0.00
427 14 0.00
428 2 0.00
429 8 0.00
431 1 0.00
432 5 0.00
433 2 0.00
435 2 0.00
436 6 0.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (370 bp):
ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAACGT
TATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATAT
TCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCACCATT
TAGACTGCGTTGGTGTTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTCTTTTAGGGTGGT
TGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGTGGTTCGTGA
GGCATTTACTCTTCTAGTGAGTGAGGATTTTAGCAATTTTCCCAA
Found at i:13899422 original size:744 final size:738
Alignment explanation
Indices: 13897305--13902584 Score: 4479
Period size: 744 Copynumber: 7.0 Consensus size: 738
13897295 AGTTCCCTAC
* *
13897305 ATTTTTTACGTTCCTCTCTTTCCACCACTTCCATTTCTTTTTCCCATTTT-TTGTTCCTCTAACG
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTT-TTCCTCTAACG
*
13897369 TTA----TT-TTCTTCTTTCTTTCTGTTTCGTTTTAT-TTT-GTTTCTTTTACATTTGTTGCCAT
65 TTATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTT-TCTTTCGTTTCTTTTACATTTGTTGCCAT
* * *
13897427 ATTCCCCTGTTATCGTCTCTTGCTACTGTTTCTTCATTGCCGACCTATCTTCTATTGTGGCGA-C
129 ATTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGT-GCCACC
* * *
13897491 ATTTAGATTACGTTGGTGTTATTAAAATCTTCTA-GTAAGTATAATTCGTTAGTTTTCTTTTAGG
193 ATTTAGACTGCGTTGGTGTTATTAAAATATTC-AGGTAAGTATAATTCGTTAG-TTTCTTTTAGG
* *
13897555 GTGGTTGTCTTGATATCGTTGAAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGT
256 GTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGT
* * * * *
13897620 TCATGAGGCATTTACTCTTTTAGCGAGTAAAGATTTTAGCAATTTTCCCAAATTTTTTATATTTC
321 TCATGAGGCATTTACTC-TTTAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCC
*** * * * *
13897685 TCTCTTTCTGTTGCTTCCATTTCTTTTTCCCATTTTATGTTCGTCTAACGT-TCTTTTCTTCTTC
385 TCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTT-TGTTCCTCTGAC-TAT-TATT-TTCTTC
* * * *
13897749 TTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATATTCCTCTGTTGTC
446 TTCTTTCTTTCTGTTTCA-TTTTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGAC
* * * ** * *
13897814 GTCTCTTGCTATTGTTTCTTCATTTCCGATCAATCTTCTGTTGTGCTACCATTTTGATTGTGTTG
510 GTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTG
* * * *
13897879 GTGTTATTAAAATCATCAAGTAAGTATAATTTGTTAGTTTCATTTTAGGGTGGTTATCTTGATAT
575 GTGTTATTAAAATCTTCAAGTAAGTATAATTCGTTATTTTC-TTTTAGGGTGGTTGTCTTGATAT
* ** * ** * * * * *
13897944 CTTTGGAAGGCCTTTTACTATCATTAGTACTAATTTT-TTTAGGGTGATTCGTGAGGCATTTACT
639 CTTTGGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTACT
* *
13898008 CTTCTGGTGAATGAGGATTTTAGCAATTTTC-CTAA
704 TTTCTGGTGAGTGAGGATTTTAGCAATTTTCAC-AA
* * * * * *
13898043 ATTTTTTATGTTCCTCTCTTTCCACAACTTCTATTTCTTTTTCCCCTTTTATGTTCCTCTAATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
* * * *
13898108 TATTTTTTCTTCTTCTTCCTTTTTGTTTCATTTTTCCTTCGTTTCTTTTACATTTGTTGCTATAT
66 TATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATAT
** * * * * * *
13898173 TCCTTTGTTGTCATCTCTTACTATTGTTTCTTTATTGCTGACATATCTTCTATTGTGCCACCATT
131 TCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGTGCCACCATT
* * * * *
13898238 TAGACTGTGTTAGTGTTCTTAAAATCATT-AGGTAAGTATAATTCGTTAGTTTCGTTTTAGGATA
196 TAGACTGCGTTGGTGTTATTAAAAT-ATTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGTG
* * *
13898302 GTTGTCTTGATATCATTGGAAGGTCTTTTGCTTTCATTAGTTGTGATTTTGCTA-GGGAGGTTCA
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTCA
* * * * * *
13898366 TGAGGCATTTAATCTTTTGGCGAATGAGGATTTTAGCAATTTCTCCAAATTTTTTATTTTCTTCT
324 TGAGGCATTTACTC-TTTAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCT
* * * * *
13898431 CTTTCCACTACTTCAATTTCTTTTTCTCATTCTCTGTTCCTCT-AATGTTATTTTTTCTTCTTCT
388 CTTTCCACTACTTCCATTTCTTTTTCCCATT-TTTGTTCCTCTGACTATTA--TTTTCTTCTTCT
* * *
13898495 TTC-TTCTAGTTTCGTTTTCTTTTGTTTCTTTTACATTTGTT-TCCATATTCTCCTATTGACGTC
450 TTCTTTCT-GTTTCATTTTCTTTTGTTTCTTTTACATTTGTTGT-CATATTCCCCTGTTGACGTC
* * * ** * **
13898558 TCTTACTATTGTTTCTTCATTACCGACCTATATTCTGTTGTGTTGCCATTTAGACTGCGTCAGTG
513 TCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGTG
* * * *
13898623 TTATTAAAATCTTCAGGTAAGTATAATTCGTTAGTTTTGTTTTAGAGTAGTTGTCTTGATATCTT
578 TTATTAAAATCTTCAAGTAAGTATAATTCGTTA-TTTTCTTTTAGGGTGGTTGTCTTGATATCTT
** * *
13898688 TGGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTATTGAGGCATTTAATTTT
642 TGGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTACTTTT
13898753 CTGGTGAGTGAGGATTTTAGCAATTTTCACAA
707 CTGGTGAGTGAGGATTTTAGCAATTTTCACAA
*
13898785 ATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
** * *
13898850 TATTTTCTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTTATTTCTTTTAAATTTGTTGTCATA
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * *
13898915 TTCCCTTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTTTTATGCCACCAT
130 TTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGTGCCACCAT
* *
13898980 TTAGACTGCGTTGGTGTTATTATTAAAATTTTCAGGTAAGTATAATTCATTAGTTTCGTTTTAGG
195 TTAGACTGCGTTGGTG---TTATTAAAATATTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGG
* * * * *
13899045 GTGGTTGTTTTTAAATCTTTGGAAGGTATTTTGGTTTCTTTAGTTGTGATTTTGCTAGGGGTGGT
256 GTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGT
* * * * * *
13899110 TCATGAGGCTTTTACTCTTTGGCGAGTGAGTATTTCAGCAATTTCCCCAAATCTTTTACGTTCCT
321 TCATGAGGCATTTACTCTTTAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCT
*
13899175 CTGTTTCCACTACTTCCATTTCTTTTTCCCATTTTTGGTTCCTCTGACT-TTATTTTCTTCTTCT
386 CTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTT-GTTCCTCTGACTATTATTTTCTTCTTCT
* * *
13899239 TTATTTATG-TTCTATTTTATTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACGTCT
450 TTCTTTCTGTTTC-ATTTTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACGTCT
* *
13899303 CTTGCTACTGTTTCTTTATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGTGT
514 CTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGTGT
* *
13899368 TATTAAAATCTTTATGTAAGTATAATTCGTTACTTTTCTTTTAGGGTGGTTGTCTTGATATCTTT
579 TATTAAAATCTTCAAGTAAGTATAATTCGTTA-TTTTCTTTTAGGGTGGTTGTCTTGATATCTTT
*
13899433 GGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAGGGGTGGTTCGTGAGGCGTTTACTTTTC
643 GGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTACTTTTC
** * *
13899498 TAATGAGTTAGGATTTTAGCAATTTTCCCAA
708 TGGTGAGTGAGGATTTTAGCAATTTTCACAA
* * *
13899529 ATTTTTTATGTTCCTCTCTTTCCACTAATTCCATTTCTTTTTCCCAGTTTCGGTTT-CTCTAACG
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTC-TTTTCCTCTAACG
13899593 TTATTTTCTTCTTCTTCTTTCTTTCTGTTT--TGTTTTCTTTCGTTTCTTTTACATTTGTTGCCA
65 TTATTTT-TTCTTCTTCTTTCTTTCTGTTTCAT-TTTTCTTTCGTTTCTTTTACATTTGTTGCCA
* * * * * * * * ** *
13899656 TATTCTCCTGTTGTCGTTTCTTGCTATTGCTTCTTCGTTACCGACCTATCTTCTGTTGTGCTGCT
128 TATTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGTGCCACC
* * *
13899721 ATTTAGACTGCATTGGTGTTATTAAAATCTTCTGGTAAGTATAATTCGTTAGTTTTCTTTTAGGG
193 ATTTAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGG
* *
13899786 TGGTTGTCTTGATATCTTCTATTGTGCGACCATTTAGACTGTGTTGGTGTTCTTAAAATTA-TTA
257 TGGTTGTCTTGATA---TC--TT-TG-GA--A---GGTCT-T-TTGGT-TTC-----ATTAGTT-
* * **** ** * * * ** *
13899850 GGTAAGTATAATTCGTTAATATTCTTTTAGGGTGGTTGTCTTAATATCTTT-G-GA---AGG-TT
301 -GT--G-AT--TTTGCTAGGGGTGGTTCA-TGAGG-CAT-TT-A-CTCTTTAGCGAGTGAGGATT
** * *** * * ** *
13899909 TTTTC-CTTTCATTAGTTGTAATTTTGCTAGGGGTGGTTCGTGAGGCGTTT--ACT-CTT-C-TA
355 TTAGCAATTTCCCCA-----AATTTT-TTA----T-GTTCCT--CTC-TTTCCACTACTTCCATT
* *** **** * * ** * * * **
13899968 GCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCTTC-TCTTTCCACTACTTCCATT
406 TCTTTTTCCCATTTTTG----TTCCTCTGA-CTATTATTTTCTTCTTCTTT---CT--TTCTGTT
* * * * * * * * * * * *** * *
13900032 TCTTTTTACCATTTTATGTTCCTCTAACGTTATCTTCTTCTTCTTCTTCCTTTCTGTTTTATTTT
461 TCATTTT--C--TTT-TGTTTCTTTTACATT-TGTT-GTCATATTC-CCCTGT-TGACGTCTCTT
* **** ** * * *
13900097 TCT-TTCGTTTCTTTTACATTTTTTACCATATTCCCCTATTGT--CGTC-TCTT--ACTATTGTT
517 GCTATT-GTTTC--TT-CATTGCCGACC-TA-TCTTCTGTTGTGCCGCCAT-TTAGACT-GTGTT
* * ** * * ** ** * ** **** * * * *
13900156 GCT-TCATTGCCAACCTGC-CTTCTGT-T-CTGTCGCCA-TTTAGACTACGTTGG-TGCTATTAA
574 GGTGTTATT-AAAATCTTCAAGTAAGTATAAT-TCGTTATTTTCTTTTAGGGTGGTTG-TCTTGA
* * * * * * *
13900215 AAT-ATT-CAA-GTATAATTCGCTAGTTTAATTTTAGGGTGGTT-ATCTTAATATCTTTGGAATG
636 TATCTTTGGAAGGTCT--TT---TGGTTTCA--TTA--GT-GTTGAT-TT--T-GC--T--AA-G
** * * ** * * *
13900276 TCTTTTGGTTTCATTAGTTG-TGATTTTTCTAGGTTGGTTCGTGAGGCGTTTACTTTTCTAGCGA
682 ---GGTGG-TTCGTGAGGCGTTTACTTTTCT-GG-T-G--AGTGA-G-G---A--TTT-TAGC--
*
13900340 GTAAGGACTTTAGAATTTCCCCAA
728 ---A--A---T----TTT-CACAA
* *
13900364 ATTTTTTATGTTCCTCTCTTTCCACTACTTTCATTTCCTTTTCCCATTTT-TTGTTCCTCTAACG
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTT-TTCCTCTAACG
* *
13900428 TTATTTTTT-TTCTTCTTTCTTTCTGTTTTA-TTTTCTTTTGTTT-TTTTACATTTGTTGCCATA
65 TTATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * * * * * *
13900490 TTCCCCTATTATCGTCTCTTGCTACTGTTTTTTCGTTACCGACATATTTTCTATTGTGCCGCCAT
130 TTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGTGCCACCAT
* * * * *
13900555 GTAGACTGGGTTGGTGTTATTAAACTCTTTAGGTAAGTATAATTCGTTAGTTTTCTTTTAGGGTG
195 TTAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCGTTAG-TTTCTTTTAGGGTG
* *
13900620 GTTGTCTTGATATCTTTGGGAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTCG
259 GTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTCA
* * *
13900685 TGAGGCATTTACTCTTCTGGCGAGTGAGGATTTTTA-CAATTTCCCC-ATTTTTTTATATTCCTC
324 TGAGGCATTTACTCTT-TAGCGAGTGAGGA-TTTTAGCAATTTCCCCAAATTTTTTATGTTCCTC
* * * *
13900748 TCTTTCTACTACTTTCATTT-TGTTTTCCCATTTTTCTTCCTCTAACGTCATT-TTTTCTTCTTC
387 TCTTTCCACTACTTCCATTTCT-TTTTCCCATTTTTGTTCCTCTGAC-T-ATTATTTTCTTCTTC
* * * * *** **
13900811 TTCCTTTCTGTTTCATTTTTCCTTCGTTTCTATTACATTTGTTG-CTATATTCTTTTGTTGTTGT
449 TTTCTTTCTGTTTCA-TTTTCTTTTGTTTCTTTTACATTTGTTGTC-ATATTCCCCTGTTGACGT
*
13900875 CTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTGCCGCCATTTAGACTGTGTTGGT
512 CTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGT
* *
13900940 GTTATTAAAATCATT-AGGTAAGTATAATTAGTTAGTTTTCTTTTAGGGTGGTTGTCTTGATATC
577 GTTATTAAAATC-TTCAAGTAAGTATAATTCGTTA-TTTTCTTTTAGGGTGGTTGTCTTGATATC
* *
13901004 TTTGGAAGGTCTTTTGGTTTCATTAGT-TGTGATTTTGCTAGGGGTGGTTCGTGAGACGTTTACT
640 TTTGGAAGGTCTTTTGGTTTCATTAGTGT-TGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTACT
* * *
13901068 TTTCTAGCGAGTGAGGATTTTAGCAATTTCCACAA
704 TTTCTGGTGAGTGAGGATTTTAGCAATTTTCACAA
* ** *
13901103 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCAATTTTCAGTTCCTCTAATGT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
* * * * * *
13901168 TATTTTTTTTTCTTCTTCTTCCATTCTGTTTTATATTTCTTTCGTTTCTTTTACATTTATTTCCA
66 TA---TTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCA
* *
13901233 TATTCCCCTGTTATCGTCTCTTTCTATTGTTTCTTCATTGTCGACTTATCTTCTACTT-TGCCAC
128 TATTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTA-TTGTGCCAC
* * * *
13901297 CATTTAGACTGCATTGGTGTTCTTAAAATCATT-AGGTAAGTATAATTCATTAATTTCGTTTTAG
192 CATTTAGACTGCGTTGGTGTTATTAAAAT-ATTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAG
* * * * *
13901361 GGTGGTTGACTTGATATCTTTAGAAGGTCTTTTGCTTTCATTAGTTGTAATTTTGCTA-GAGTGG
255 GGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGG
* * * *
13901425 TTCGTGAGGCATTTAGTCTTCTAGTGAGTGAGGATTTTAGCAACTTCCCCAAATTTTTTATGTTC
320 TTCATGAGGCATTTACTCTT-TAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTC
* * * *
13901490 TTCTCTTTCCACTACTTCCATTTCTTTTTCCTATTTTT-TTCCTCTGATGTTATTTTTTTTCTTC
384 CTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTTGTTCCTCTGA--CTA-TTATTTTCTTC
* * **
13901554 TTTTTTCTTTCTATTTTTTTTTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACG
446 TTCTTTCTTTCTGTTTCATTTTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACG
* * * ** *
13901619 CCTCTTGCTATTGTTTCTTCATTGCCGACCTATATTCTGTTGTGCTAG-CATTTTA-ACTGCATC
511 TCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGC-CGCCA-TTTAGACTGTGTT
* * * * *
13901682 GGTGTTTTTAAAATCTTCAAGTATGTATAATTCGTTAGTTTCATTTTAGGGTGGTTGTTTTGCTA
574 GGTGTTATTAAAATCTTCAAGTAAGTATAATTCGTTATTTTC-TTTTAGGGTGGTTGTCTTGATA
* ** * *
13901747 TCTTTGGAAGGACTTTTGGTTTCATTAGTGTTGATTTTTTTAGGGGTGGTTCGTAAGGCGTTTAC
638 TCTTTGGAAGGTCTTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTAC
* * * *
13901812 TTTTCTAGTGAGTAAGGGTTTTAGCAA-TTTCTCAA
703 TTTTCTGGTGAGTGAGGATTTTAGCAATTTTCACAA
* * * *
13901847 ATTTTTTATGTTCCTCTTTTTCCACTACTTCCATTTCTTTTTCCCACTTTCTGTTCCTCTAACTT
1 ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
* * **
13901912 TATTTTCTTTTTCTTCTTT-TTTC-ATTTCATTTTGATTTCGTTTCTTTTACATTTGTTGCCATA
66 TATTTT-TTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATA
* * * * * ** * * *
13901975 TTCCCATGTTTTCATCTCTTGATATTATTTCTTCATTGTAGA-TCTATCTGCTGTTGTGCCGCCA
130 TTCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACT-TATCTTCTATTGTGCCACCA
*
13902039 TTTAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCATTAGTTTCATTTTAGGGT
194 TTTAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCGTTAGTTTC-TTTTAGGGT
* * ** * **
13902104 GGTTGTCTTGGTATCTTTGGAAGGTCTTTTGATTTTGTTAGTTATGATTTTGCTAAAGGTGGTTC
258 GGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTC
* ** * * *
13902169 ATAAGGTGTTTACTCTTCTAGAGAGTGATGATTTTAGCAATTTCCCC-AATTTTTTATGTTCTTC
323 ATGAGGCATTTACTCTT-TAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTC
* * *
13902233 TCTTTCCACTACTTCCATTTCTTTTGACCTATTTTCTGTTCCTCTGACGTTATTTTTTTCTTCTT
387 TCTTTCCACTACTTCCATTTCTTTT-TCCCATTTT-TGTTCCTCTGAC--TATTATTTTCTTCTT
* * * ***
13902298 CTTTATTTCTGTTTCATTATTCTTTTGTTTCTTTTACATTTGTTATCATTTTCCCCTGTTGTTAT
448 CTTTCTTTCTGTTTCATT-TTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACGT
* * ** * **
13902363 CTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTGCCATCATTTAAACTGCATTGGT
512 CTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGT
* * *
13902428 GTTATTAAAATCCTCAAGTAAGTATAATTTGTTATTTTCATTTTAGGGTGGTTGTTTTGATATCT
577 GTTATTAAAATCTTCAAGTAAGTATAATTCGTTATTTTC-TTTTAGGGTGGTTGTCTTGATATCT
* *
13902493 TTGGAAGGTTTTTTTGTTTCATTAGT-TGTGATTTTGCTAAGGGTGGTTCGTGAGAG-GTTTACT
641 TTGGAAGGTCTTTTGGTTTCATTAGTGT-TGATTTTGCTAAGGGTGGTTCGTGAG-GCGTTTACT
*
13902556 CTTCTGGTGAGTGAGGATTTTAGCAATTT
704 TTTCTGGTGAGTGAGGATTTTAGCAATTT
13902585 CTTTTCTCTT
Statistics
Matches: 3655, Mismatches: 639, Indels: 490
0.76 0.13 0.10
Matches are distributed among these distances:
738 59 0.02
739 71 0.02
740 280 0.08
741 246 0.07
742 191 0.05
743 616 0.17
744 666 0.18
745 447 0.12
746 204 0.06
747 26 0.01
749 2 0.00
752 2 0.00
753 1 0.00
754 9 0.00
755 6 0.00
757 1 0.00
759 2 0.00
760 4 0.00
761 3 0.00
762 4 0.00
763 1 0.00
764 8 0.00
765 4 0.00
766 19 0.01
767 14 0.00
768 1 0.00
769 9 0.00
770 5 0.00
771 6 0.00
772 1 0.00
773 9 0.00
774 1 0.00
775 9 0.00
776 10 0.00
777 7 0.00
778 25 0.01
779 6 0.00
780 13 0.00
781 15 0.00
782 17 0.00
783 28 0.01
784 7 0.00
785 19 0.01
786 15 0.00
787 25 0.01
788 14 0.00
789 21 0.01
790 7 0.00
791 31 0.01
792 14 0.00
793 18 0.00
794 14 0.00
795 22 0.01
796 22 0.01
797 7 0.00
798 3 0.00
799 8 0.00
801 5 0.00
802 4 0.00
803 9 0.00
804 4 0.00
805 3 0.00
806 8 0.00
807 14 0.00
808 10 0.00
809 10 0.00
810 1 0.00
811 2 0.00
812 7 0.00
813 3 0.00
814 1 0.00
817 4 0.00
818 5 0.00
819 4 0.00
820 7 0.00
823 1 0.00
825 2 0.00
826 2 0.00
827 3 0.00
829 2 0.00
830 1 0.00
832 143 0.04
833 32 0.01
834 7 0.00
835 66 0.02
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (738 bp):
ATTTTTTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTTTTCCTCTAACGT
TATTTTTTCTTCTTCTTTCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCCATAT
TCCCCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGCCGACTTATCTTCTATTGTGCCACCATT
TAGACTGCGTTGGTGTTATTAAAATATTCAGGTAAGTATAATTCGTTAGTTTCTTTTAGGGTGGT
TGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTGGTTCATG
AGGCATTTACTCTTTAGCGAGTGAGGATTTTAGCAATTTCCCCAAATTTTTTATGTTCCTCTCTT
TCCACTACTTCCATTTCTTTTTCCCATTTTTGTTCCTCTGACTATTATTTTCTTCTTCTTTCTTT
CTGTTTCATTTTCTTTTGTTTCTTTTACATTTGTTGTCATATTCCCCTGTTGACGTCTCTTGCTA
TTGTTTCTTCATTGCCGACCTATCTTCTGTTGTGCCGCCATTTAGACTGTGTTGGTGTTATTAAA
ATCTTCAAGTAAGTATAATTCGTTATTTTCTTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTC
TTTTGGTTTCATTAGTGTTGATTTTGCTAAGGGTGGTTCGTGAGGCGTTTACTTTTCTGGTGAGT
GAGGATTTTAGCAATTTTCACAA
Found at i:13899866 original size:96 final size:96
Alignment explanation
Indices: 13899702--13899899 Score: 276
Period size: 96 Copynumber: 2.1 Consensus size: 96
13899692 GTTACCGACC
* *
13899702 TATCTTCTGTTGTGCTGCTATTTAGACTGCATTGGTGTTATTAAAATCTTCTGGTAAGTATAATT
1 TATCTTCTATTGTGCTGCCATTTAGACTGCATTGGTGTTATTAAAATCTTCTGGTAAGTATAATT
* * *
13899767 CGTTAGTTTTCTTTTAGGGTGGTTGTCTTGA
66 CGTTAATATTCTTTTAGGGTGGTTGTCTTAA
** *
13899798 TATCTTCTATTGTGC-GACCATTTAGACTGTGTTGGTGTTCTTAAAAT-TAT-TAGGTAAGTATA
1 TATCTTCTATTGTGCTG-CCATTTAGACTGCATTGGTGTTATTAAAATCT-TCT-GGTAAGTATA
13899860 ATTCGTTAATATTCTTTTAGGGTGGTTGTCTTAA
63 ATTCGTTAATATTCTTTTAGGGTGGTTGTCTTAA
13899894 TATCTT
1 TATCTT
13899900 TGGAAGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
95 3 0.03
96 88 0.97
ACGTcount: A:0.21, C:0.11, G:0.20, T:0.47
Consensus pattern (96 bp):
TATCTTCTATTGTGCTGCCATTTAGACTGCATTGGTGTTATTAAAATCTTCTGGTAAGTATAATT
CGTTAATATTCTTTTAGGGTGGTTGTCTTAA
Found at i:13901392 original size:745 final size:745
Alignment explanation
Indices: 13899798--13902585 Score: 3519
Period size: 745 Copynumber: 3.8 Consensus size: 745
13899788 GTTGTCTTGA
* * * *
13899798 TATCTTCTATTGTGCGACCATTTAGACTGTGTTGGTGTTCTTAAAATTATTAGGTAAGTATAATT
1 TATCTTCTATTGTGCCACCATTTAGACTGCGTTGGTGTTATTAAAATCATTAGGTAAGTATAATT
* * * *
13899863 CGTTAATATTCTTTTAGGGTGGTTGTCTTAATATCTTTGGAAGGTTTTTTCCTTTCATTAGTTGT
66 CATTAAT-TTCTTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGCTTTCATTAGTTGT
*
13899928 AATTTTGCTAGGGGTGGTTCGTGAGGCGTTTACTCTTCTAGCGAGTGAGGATTTTAGCAATTTCC
130 AATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAGGATTTTAGCAATTTCC
*
13899993 CCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTACCATTTTATGTTCCTCTA
195 CCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTATGTTCCTCTA
* * * * *
13900058 ACGTTATCTTCTTCTTCTTCTTCCTTTCTGTTTTATTTTTCTTTCGTTTCTTTTACATTTTTTAC
260 ACGTTATTTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGC
* * * ** * * *
13900123 -CATATTCCCCTATTGTCGTCTCTTACTATTGTTGCTTCATTGCCAACCTGCCTTCTGTTCTGTC
325 TCATATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTGCC
* * * * * *
13900187 GCCATTTAGACTACGTTGGTGCTATTAAAAT-ATT---CAAGTATAATTCGCTAG-TTTAATTTT
390 GCCATTTAGACTGCATTGGTGTTATTAAAATCATTAAGTAAGTATAATTCGTTAGTTTTCATTTT
* * * * *
13900247 AGGGTGGTTATCTTAATATCTTTGGAATGTCTTTTGGTTTCATTAGTTGTGATTTTTCTA-GGTT
455 AGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGT
* * *
13900311 GGTTCGTGAGGCGTTTACTTTTCTAGCGAGTAAGGACTTTAG-AATTTCCCCAAATTTTTTATGT
520 GGTTCGTGAGACGTTTACTTTTCTAGCGAGTAAGGATTTTAGCAATTTCCACAAATTTTTTATGT
* * * *
13900375 TCCTCTCTTTCCACTACTTTCATTTCCTTTTCCCATTTTTTGTTCCTCTAACGTTA-TTTTTTTT
585 TCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAATGTTATTTTTTTTT
* *
13900439 CTTC-TTTCTTTCTGTTTTATTTTCTTTTGTTT-TTTTACATTTGTTGCCATATTCCCCTATTAT
650 CTTCTTTTC-TTCTGTTTTATTTTCTTTCGTTTCTTTTACATTTGTTGCCATATTCCCCTGTTAT
* * * ** *
13900502 CGTCTCTTGCTACTGTTTTTTCGTTACCGACA
714 CGTCTCTTGCTATTGTTTCTTCATTGTCGACT
* * * * * *
13900534 TATTTTCTATTGTGCCGCCATGTAGACTGGGTTGGTGTTATTAAACTCTTTAGGTAAGTATAATT
1 TATCTTCTATTGTGCCACCATTTAGACTGCGTTGGTGTTATTAAAATCATTAGGTAAGTATAATT
* * * *
13900599 CGTTAGTTTTCTTTTAGGGTGGTTGTCTTGATATCTTTGGGAGGTCTTTTGGTTTCATTAGTTGT
66 CATTA-ATTTCTTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGCTTTCATTAGTTGT
* *
13900664 GATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTGGCGAGTGAGGATTTTTA-CAATTTC
130 AATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAGGA-TTTTAGCAATTTC
* * * * * *
13900728 CCC-ATTTTTTTATATTCCTCTCTTTCTACTACTTTCATTT-TGTTTTCCCATTTT-TCTTCCTC
194 CCCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCT-TTTTCCCATTTTATGTTCCTC
* * *
13900790 TAACGTCA-TTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCCTTCGTTTCTATTACATTTGTT
258 TAACGTTATTTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTT
*** * *
13900854 GCT-ATATTCTTTTGTTGTTGTCTCTTGCTATTGTTTCTTCATTGCCGACCTATCTTCTATTGTG
323 GCTCATATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTG
** * *
13900918 CCGCCATTTAGACTGTGTTGGTGTTATTAAAATCATTAGGTAAGTATAATTAGTTAGTTTTC-TT
388 CCGCCATTTAGACTGCATTGGTGTTATTAAAATCATTAAGTAAGTATAATTCGTTAGTTTTCATT
13900982 TTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGG
453 TTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGG
*
13901047 GTGGTTCGTGAGACGTTTACTTTTCTAGCGAGTGAGGATTTTAGCAATTTCCACAAATTTTTTAT
518 GTGGTTCGTGAGACGTTTACTTTTCTAGCGAGTAAGGATTTTAGCAATTTCCACAAATTTTTTAT
* *
13901112 GTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCAATTTTCAGTTCCTCTAATGTTATTTTTTT
583 GTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAATGTTATTTTTTT
* *
13901177 TTCTTCTTCTTCCATTCTGTTTTATATTTCTTTCGTTTCTTTTACATTTATTTCCATATTCCCCT
648 TTCTTCTT-TT-C-TTCTGTTTTAT-TTTCTTTCGTTTCTTTTACATTTGTTGCCATATTCCCCT
*
13901242 GTTATCGTCTCTTTCTATTGTTTCTTCATTGTCGACT
709 GTTATCGTCTCTTGCTATTGTTTCTTCATTGTCGACT
* *
13901279 TATCTTCTACTT-TGCCACCATTTAGACTGCATTGGTGTTCTTAAAATCATTAGGTAAGTATAAT
1 TATCTTCTA-TTGTGCCACCATTTAGACTGCGTTGGTGTTATTAAAATCATTAGGTAAGTATAAT
* *
13901343 TCATTAATTTCGTTTTAGGGTGGTTGACTTGATATCTTTAGAAGGTCTTTTGCTTTCATTAGTTG
65 TCATTAATTTC-TTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGCTTTCATTAGTTG
* * * *
13901408 TAATTTTGCTA-GAGTGGTTCGTGAGGCATTTAGTCTTCTAGTGAGTGAGGATTTTAGCAACTTC
129 TAATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAGGATTTTAGCAATTTC
*
13901472 CCCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCTATTTT-T-TTCCTCT
194 CCCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTATGTTCCTCT
* * * * * * *
13901535 GATGTTATTTTTTTTCTTCTTTTTTCTTTCTATTT-TTTTTTCTTTTGTTTCTTTTACATTTGTT
259 AACGTTA-TTTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTT
* * * * *
13901599 G-TCATATTCCCCTGTTGACGCCTCTTGCTATTGTTTCTTCATTGCCGACCTATATTCTGTTGTG
323 GCTCATATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTG
* * * *
13901663 CTAG-CATTTTA-ACTGCATCGGTGTTTTTAAAATC-TTCAAGTATGTATAATTCGTTAG-TTTC
388 C-CGCCA-TTTAGACTGCATTGGTGTTATTAAAATCATT-AAGTAAGTATAATTCGTTAGTTTTC
* * * **
13901724 ATTTTAGGGTGGTTGTTTTGCTATCTTTGGAAGGACTTTTGGTTTCATTAG-TGTTGATTTTTTT
450 ATTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTG-TGATTTTGCT
* * * * *
13901788 AGGGGTGGTTCGTAAGGCGTTTACTTTTCTAGTGAGTAAGGGTTTTAGCAATTT-CTCAAATTTT
514 AGGGGTGGTTCGTGAGACGTTTACTTTTCTAGCGAGTAAGGATTTTAGCAATTTCCACAAATTTT
* *
13901852 TTATGTTCCTCTTTTTCCACTACTTCCATTTCTTTTTCCCACTTTCTGTTCCTCTAACT-TTATT
579 TTATGTTCCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAA-TGTTATT
* * *
13901916 TTCTTTTTCTTCTTTT-TTC-ATTTCATTTTGATTTCGTTTCTTTTACATTTGTTGCCATATTCC
643 TT-TTTTTCTTCTTTTCTTCTGTTTTATTTT-CTTTCGTTTCTTTTACATTTGTTGCCATATTCC
* * * * * *
13901979 CATGTTTTCATCTCTTGATATTATTTCTTCATTGTAGA-T
706 CCTGTTATCGTCTCTTGCTATTGTTTCTTCATTGTCGACT
* * *
13902018 CTATCTGCTGTTGTGCCGCCATTTAGACTGCGTTGGTGTTATTAAAAT-ATTCAGGTAAGTATAA
1 -TATCTTCTATTGTGCCACCATTTAGACTGCGTTGGTGTTATTAAAATCATT-AGGTAAGTATAA
* * * **
13902082 TTCATTAGTTTCATTTTAGGGTGGTTGTCTTGGTATCTTTGGAAGGTCTTTTGATTTTGTTAGTT
64 TTCATTAATTTC-TTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGCTTTCATTAGTT
* * ** * * ** * *
13902147 ATGATTTTGCTAAAGGTGGTTCATAAGGTGTTTACTCTTCTAGAGAGTGATGATTTTAGCAATTT
128 GTAATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAGGATTTTAGCAATTT
* * *
13902212 CCCC-AATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTGACCTATTTTCTGTTCCT
193 CCCCAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTT-TCCCATTTTATGTTCCT
* ** * *
13902276 CTGACGTTATTTTTTTCTTCTTCTTTATTTCTGTTTCATTATTCTTTTGTTTCTTTTACATTTGT
257 CTAACGTTATTTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGT
* * **
13902341 T-ATCATTTTCCCCTGTTGTTATCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGT
322 TGCTCATATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGT
** * * * *
13902405 GCCATCATTTAAACTGCATTGGTGTTATTAAAATCCTCAAGTAAGTATAATTTGTTA-TTTTCAT
387 GCCGCCATTTAGACTGCATTGGTGTTATTAAAATCATTAAGTAAGTATAATTCGTTAGTTTTCAT
* * * *
13902469 TTTAGGGTGGTTGTTTTGATATCTTTGGAAGGTTTTTTTGTTTCATTAGTTGTGATTTTGCTAAG
452 TTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGG
* * * * *
13902534 GGTGGTTCGTGAGAGGTTTACTCTTCTGGTGAGTGAGGATTTTAGCAATTTC
517 GGTGGTTCGTGAGACGTTTACTTTTCTAGCGAGTAAGGATTTTAGCAATTTC
13902586 TTTTCTCTTC
Statistics
Matches: 1784, Mismatches: 220, Indels: 88
0.85 0.11 0.04
Matches are distributed among these distances:
733 129 0.07
734 18 0.01
735 43 0.02
736 171 0.10
737 80 0.04
738 45 0.03
739 80 0.04
740 238 0.13
741 58 0.03
742 31 0.02
743 258 0.14
744 154 0.09
745 448 0.25
746 31 0.02
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.50
Consensus pattern (745 bp):
TATCTTCTATTGTGCCACCATTTAGACTGCGTTGGTGTTATTAAAATCATTAGGTAAGTATAATT
CATTAATTTCTTTTAGGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGCTTTCATTAGTTGTA
ATTTTGCTAGGGGTGGTTCGTGAGGCATTTACTCTTCTAGCGAGTGAGGATTTTAGCAATTTCCC
CAAATTTTTTATGTTCTTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTATGTTCCTCTAA
CGTTATTTTTTTCTTCTTCTTCCTTTCTGTTTCATTTTTCTTTCGTTTCTTTTACATTTGTTGCT
CATATTCCCCTGTTGTCGTCTCTTGCTATTGTTTCTTCATTGCCAACCTATCTTCTATTGTGCCG
CCATTTAGACTGCATTGGTGTTATTAAAATCATTAAGTAAGTATAATTCGTTAGTTTTCATTTTA
GGGTGGTTGTCTTGATATCTTTGGAAGGTCTTTTGGTTTCATTAGTTGTGATTTTGCTAGGGGTG
GTTCGTGAGACGTTTACTTTTCTAGCGAGTAAGGATTTTAGCAATTTCCACAAATTTTTTATGTT
CCTCTCTTTCCACTACTTCCATTTCTTTTTCCCATTTTCTGTTCCTCTAATGTTATTTTTTTTTC
TTCTTTTCTTCTGTTTTATTTTCTTTCGTTTCTTTTACATTTGTTGCCATATTCCCCTGTTATCG
TCTCTTGCTATTGTTTCTTCATTGTCGACT
Found at i:13901589 original size:16 final size:17
Alignment explanation
Indices: 13901551--13901589 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
13901541 ATTTTTTTTC
13901551 TTCTTTTTTCTTTCTAT
1 TTCTTTTTTCTTTCTAT
*
13901568 TT-TTTTTTCTTT-TGT
1 TTCTTTTTTCTTTCTAT
13901583 TTCTTTT
1 TTCTTTT
13901590 ACATTTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 4 0.20
16 14 0.70
17 2 0.10
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (17 bp):
TTCTTTTTTCTTTCTAT
Found at i:13904027 original size:12 final size:12
Alignment explanation
Indices: 13904006--13904040 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
13903996 TTAGACTTTG
13904006 TTTTCTGTTTTCA
1 TTTTC-GTTTTCA
13904019 TTTTCGTTTTCA
1 TTTTCGTTTTCA
13904031 TTTTCGTTTT
1 TTTTCGTTTT
13904041 GCTTGATGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.06, C:0.14, G:0.09, T:0.71
Consensus pattern (12 bp):
TTTTCGTTTTCA
Found at i:13905099 original size:61 final size:58
Alignment explanation
Indices: 13904962--13905106 Score: 132
Period size: 61 Copynumber: 2.4 Consensus size: 58
13904952 TTTGCCCCAA
* * * *
13904962 CAAA-TTTTGAGAAATTTTAATTTCTCCCTTGAATTCTTTTGAAAATTTTAATTAAGCCC
1 CAAATTTTTGA-AAA-TTTCATTTCTCCATTGAATTCTTTAGAAAACTTTAATTAAGCCC
* *
13905021 CAAAATTTTTTAAAAAATTTCATTTCTCCATTGAAGTT-TTTAGAAAACTTTAATTAGGTCTCC
1 C-AAA-TTTTT-GAAAATTTCATTTCTCCATTGAA-TTCTTTAGAAAACTTTAATTAAG-C-CC
13905084 TCAAATTTTTGAAAATTCTCATT
1 -CAAATTTTTGAAAATT-TCATT
13905107 ATACTTTTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
59 1 0.01
60 3 0.04
61 39 0.56
62 20 0.29
63 6 0.09
64 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (58 bp):
CAAATTTTTGAAAATTTCATTTCTCCATTGAATTCTTTAGAAAACTTTAATTAAGCCC
Found at i:13905744 original size:9 final size:9
Alignment explanation
Indices: 13905730--13905805 Score: 71
Period size: 9 Copynumber: 8.2 Consensus size: 9
13905720 ACGTTTAATT
13905730 AATTTTTAA
1 AATTTTTAA
*
13905739 AATTTTAAA
1 AATTTTTAA
13905748 AATATTTTAA
1 AAT-TTTTAA
*
13905758 TATTTTTAA
1 AATTTTTAA
*
13905767 TATTTTTAA
1 AATTTTTAA
* **
13905776 TATTTTTTT
1 AATTTTTAA
*
13905785 ATTTTTTAAA
1 AATTTTT-AA
13905795 AATTTTTAA
1 AATTTTTAA
13905804 AA
1 AA
13905806 ATTAATTAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
9 42 0.76
10 13 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
AATTTTTAA
Found at i:13905771 original size:28 final size:28
Alignment explanation
Indices: 13905731--13905807 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
13905721 CGTTTAATTA
13905731 ATTTTTAAAATTTTAAAAATATTTTAAT
1 ATTTTTAAAATTTTAAAAATATTTTAAT
* * * * *
13905759 ATTTTTAATATTTTTAATATTTTTTTAT
1 ATTTTTAAAATTTTAAAAATATTTTAAT
13905787 -TTTTTAAAAATTTTTAAAAAT
1 ATTTTT-AAAA-TTTTAAAAAT
13905808 TAATTAAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
27 5 0.13
28 26 0.67
29 8 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
ATTTTTAAAATTTTAAAAATATTTTAAT
Found at i:13905775 original size:18 final size:18
Alignment explanation
Indices: 13905730--13905805 Score: 71
Period size: 19 Copynumber: 4.1 Consensus size: 18
13905720 ACGTTTAATT
* *
13905730 AATTTTTAAAATTTTAAA
1 AATTTTTAATATTTTTAA
13905748 AATATTTTAATATTTTTAA
1 AAT-TTTTAATATTTTTAA
* **
13905767 TATTTTTAATATTTTTTT
1 AATTTTTAATATTTTTAA
* *
13905785 ATTTTTTAAAAATTTTTAA
1 AATTTTT-AATATTTTTAA
13905804 AA
1 AA
13905806 ATTAATTAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
18 21 0.47
19 24 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AATTTTTAATATTTTTAA
Found at i:13905918 original size:19 final size:21
Alignment explanation
Indices: 13905882--13905925 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
13905872 GGTGATTTGA
*
13905882 AAAAATATAAATTTAAAGGCT
1 AAAAATATAAATTTAAAGACT
13905903 AAAAA-ATAAA-TTAAAGACT
1 AAAAATATAAATTTAAAGACT
13905922 AAAA
1 AAAA
13905926 GGATTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.55
20 5 0.23
21 5 0.23
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
AAAAATATAAATTTAAAGACT
Found at i:13906207 original size:15 final size:16
Alignment explanation
Indices: 13906187--13906217 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13906177 CTGGTTTTGA
13906187 ATTTAAT-AATAAGTT
1 ATTTAATAAATAAGTT
13906202 ATTTAATAAATAAGTT
1 ATTTAATAAATAAGTT
13906218 TAAATGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
ATTTAATAAATAAGTT
Found at i:13906781 original size:72 final size:68
Alignment explanation
Indices: 13906662--13906830 Score: 180
Period size: 68 Copynumber: 2.4 Consensus size: 68
13906652 AAATTTTTAA
* * * *
13906662 GGGATTAAAATTAAAC--TTTAATGAAAATAGTGAAGAAGTGAGTTATGATAGTATTCTCTATTA
1 GGGATTAAAATT-AACTTTTTAATGAAAATAATGAAGAAGTGAGCTATGAGAATA-T-TC--TTA
* *
13906725 GTTAATGT
61 GTCAATAT
* * *
13906733 GGGATCAAAATTAACTTTTTAATGAAAATAATTAAGAGGTGAGCTATGAGAATATTCTTAGTCAA
1 GGGATTAAAATTAACTTTTTAATGAAAATAATGAAGAAGTGAGCTATGAGAATATTCTTAGTCAA
13906798 TAT
66 TAT
* *
13906801 GAGATTAAAATTAACTTTTTAACGAAAATA
1 GGGATTAAAATTAACTTTTTAATGAAAATA
13906831 GTAAAAATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
68 36 0.43
70 5 0.06
71 12 0.14
72 31 0.37
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (68 bp):
GGGATTAAAATTAACTTTTTAATGAAAATAATGAAGAAGTGAGCTATGAGAATATTCTTAGTCAA
TAT
Found at i:13910722 original size:13 final size:13
Alignment explanation
Indices: 13910704--13910737 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
13910694 TGTGTAAAAT
**
13910704 GAAATGGTTACTC
1 GAAATGGTTAAAC
13910717 GAAATGGTTAAAC
1 GAAATGGTTAAAC
13910730 GAAATGGT
1 GAAATGGT
13910738 AAAATGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.26
Consensus pattern (13 bp):
GAAATGGTTAAAC
Found at i:13910778 original size:25 final size:25
Alignment explanation
Indices: 13910750--13910797 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13910740 AATGAGATGG
13910750 GTATCAGAAA-GAGTTATATAAATGA
1 GTATCAGAAATGA-TTATATAAATGA
**
13910775 GTATGTGAAATGATTATATAAAT
1 GTATCAGAAATGATTATATAAAT
13910798 CAGTTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.33
Consensus pattern (25 bp):
GTATCAGAAATGATTATATAAATGA
Found at i:13910804 original size:13 final size:13
Alignment explanation
Indices: 13910760--13910820 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
13910750 GTATCAGAAA
13910760 GAGTTATATAAAT
1 GAGTTATATAAAT
*
13910773 GAG-TATGTGAAAT
1 GAGTTATAT-AAAT
13910786 GA-TTATATAAAT
1 GAGTTATATAAAT
*
13910798 CAGTTATATAGAAT
1 GAGTTATATA-AAT
*
13910812 TAGTTATAT
1 GAGTTATAT
13910821 GAAGTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 9 0.22
13 20 0.50
14 11 0.28
ACGTcount: A:0.43, C:0.02, G:0.16, T:0.39
Consensus pattern (13 bp):
GAGTTATATAAAT
Done.