Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 47 of 161
Found at i:14215037 original size:17 final size:16
Alignment explanation
Indices: 14215015--14215048 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14215005 GGGGATGGTG
14215015 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
14215032 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
14215048 T
1 T
14215049 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:14222469 original size:10 final size:10
Alignment explanation
Indices: 14222454--14222483 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
14222444 ACTGATAATC
14222454 TGGAGCGAGA
1 TGGAGCGAGA
14222464 TGGAGCGAGA
1 TGGAGCGAGA
14222474 TGGA-CGAGA
1 TGGAGCGAGA
14222483 T
1 T
14222484 CGGTGGAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.30, C:0.10, G:0.47, T:0.13
Consensus pattern (10 bp):
TGGAGCGAGA
Found at i:14224093 original size:21 final size:21
Alignment explanation
Indices: 14224069--14224110 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14224059 AGTAAATTAC
14224069 TAAA-AAAATTAATACATAAAA
1 TAAATAAAA-TAATACATAAAA
* *
14224090 TAAATACAATAATAGATAAAA
1 TAAATAAAATAATACATAAAA
14224111 CGAGATGCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAATAAAATAATACATAAAA
Found at i:14225328 original size:11 final size:11
Alignment explanation
Indices: 14225312--14225336 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14225302 GGGTGCGATG
14225312 TTTATCCTTAA
1 TTTATCCTTAA
14225323 TTTATCCTTAA
1 TTTATCCTTAA
14225334 TTT
1 TTT
14225337 TGTCATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTATCCTTAA
Found at i:14225349 original size:21 final size:21
Alignment explanation
Indices: 14225323--14225367 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
14225313 TTATCCTTAA
14225323 TTTATCCTTAATTTTGTCATG
1 TTTATCCTTAATTTTGTCATG
14225344 TTTATCCTTAATTTTGTCATG
1 TTTATCCTTAATTTTGTCATG
14225365 TTT
1 TTT
14225368 TGGTACTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (21 bp):
TTTATCCTTAATTTTGTCATG
Found at i:14230024 original size:3 final size:3
Alignment explanation
Indices: 14230016--14230048 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14230006 GAAAGAAAAG
14230016 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
14230049 CCTCTTTCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14233399 original size:14 final size:16
Alignment explanation
Indices: 14233380--14233411 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
14233370 AAATCAAAGC
14233380 AAATCCA-AAATT-TA
1 AAATCCAGAAATTATA
14233394 AAATCCAGAAATTATA
1 AAATCCAGAAATTATA
14233410 AA
1 AA
14233412 GGCCTTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 5 0.31
16 4 0.25
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (16 bp):
AAATCCAGAAATTATA
Found at i:14242884 original size:26 final size:26
Alignment explanation
Indices: 14242851--14242902 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14242841 TTGCCATACA
14242851 TGTAAACATATTCAAATCAACAACTT
1 TGTAAACATATTCAAATCAACAACTT
14242877 TGTAAACATATTCAAATCAACAACTT
1 TGTAAACATATTCAAATCAACAACTT
14242903 GGTACATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (26 bp):
TGTAAACATATTCAAATCAACAACTT
Found at i:14252072 original size:41 final size:41
Alignment explanation
Indices: 14252016--14252359 Score: 315
Period size: 41 Copynumber: 8.4 Consensus size: 41
14252006 GCTTTAGAGA
* * *
14252016 CGTTTTTCATGAAGCGTCGCTAATGCTCGGGGTTTTAGCGG
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
*
14252057 CGTTTTTGATAAAGCGCCGCTAATGCT--GGATTTTAGCGG
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
* * *
14252096 CGTTTTCGATGAAGCGCCGCTAATGCTCTGGGTTTTAGCGG
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
* * * *
14252137 CGTTTTCGATGAAGCGCCGCTAATGCTCAGGGTTTTAGCGA
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
* * * *
14252178 CATTTAAT-ACTAAA-CACCGCTAATGCTGGGGGTTTTAGCGG
1 CGTTT-TTGA-TAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
* * *** *
14252219 CGTTTTTAGA-GAAGCGCTGCTAATGCTTTAGATTTTAGCGG
1 CGTTTTT-GATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
* * * * * *
14252260 CGTTTTTGAGAAAGTGCTGCTAATGGTTGGGTTTTTAG-GAG
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCG-G
* * *
14252301 CGTTTTTGAAAAAGCACCGCTAATGCTCGGGTTTTTAGCGG
1 CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
*
14252342 TGTTTTTG-TGAAAGCGCC
1 CGTTTTTGAT-AAAGCGCC
14252360 TCAAAAAATA
Statistics
Matches: 251, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
39 36 0.14
40 6 0.02
41 204 0.81
42 5 0.02
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (41 bp):
CGTTTTTGATAAAGCGCCGCTAATGCTCGGGGTTTTAGCGG
Found at i:14252348 original size:123 final size:123
Alignment explanation
Indices: 14252019--14252348 Score: 347
Period size: 123 Copynumber: 2.7 Consensus size: 123
14252009 TTAGAGACGT
* * *
14252019 TTTTC-ATGAAGCGTCGCTAATGCTCGGGGTTTTAGCG-GCGTTTTTGATAAAGCGCCGCTAATG
1 TTTTCGATGAAGCGCCGCTAATGCT-AGGGTTTTAGCGAGCGTTTTTGATAAAGCACCGCTAATG
* * *
14252082 CT-GGATTTTAGCGGCG-TTTTCGATGAAGCGCCGCTAATGCTCTGGGTTTTAGCGGCG
65 CTGGGATTTTAGCGGCGTTTTTAGATGAAGCGCCGCTAATGCTCTAGATTTTAGCGGCG
* *
14252139 TTTTCGATGAAGCGCCGCTAATGCTCAGGGTTTTAGCGA-CATTTAAT-ACTAAA-CACCGCTAA
1 TTTTCGATGAAGCGCCGCTAATGCT-AGGGTTTTAGCGAGCGTTT-TTGA-TAAAGCACCGCTAA
* * *
14252201 TGCTGGGGGTTTTAGCGGCGTTTTTAGA-GAAGCGCTGCTAATGCTTTAGATTTTAGCGGCG
63 TGCT-GGGATTTTAGCGGCGTTTTTAGATGAAGCGCCGCTAATGCTCTAGATTTTAGCGGCG
* * * * * *
14252262 TTTTTGA-GAAAGTGCTGCTAATGGTTGGGTTTTTAG-GAGCGTTTTTGAAAAAGCACCGCTAAT
1 TTTTCGATG-AAGCGCCGCTAATGCTAGGG-TTTTAGCGAGCGTTTTTGATAAAGCACCGCTAAT
* *
14252325 GCTCGGGTTTTTAGCGGTGTTTTT
64 GCT-GGGATTTTAGCGGCGTTTTT
14252349 GTGAAAGCGC
Statistics
Matches: 176, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
120 5 0.03
121 47 0.27
122 15 0.09
123 103 0.59
124 6 0.03
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (123 bp):
TTTTCGATGAAGCGCCGCTAATGCTAGGGTTTTAGCGAGCGTTTTTGATAAAGCACCGCTAATGC
TGGGATTTTAGCGGCGTTTTTAGATGAAGCGCCGCTAATGCTCTAGATTTTAGCGGCG
Found at i:14252842 original size:14 final size:13
Alignment explanation
Indices: 14252799--14252854 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
14252789 GATTTAATGT
*
14252799 TTAGGGGTTAGGG
1 TTAGGGGTTAGAG
*
14252812 TTA-GGGTTAGACA
1 TTAGGGGTTAGA-G
14252825 TTAGGGGTTAAGAG
1 TTAGGGGTT-AGAG
*
14252839 TTAGGGATTTAGAG
1 TTAGGG-GTTAGAG
14252853 TT
1 TT
14252855 TAGCTAGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
12 7 0.20
13 6 0.17
14 17 0.49
15 5 0.14
ACGTcount: A:0.25, C:0.02, G:0.39, T:0.34
Consensus pattern (13 bp):
TTAGGGGTTAGAG
Found at i:14253262 original size:21 final size:22
Alignment explanation
Indices: 14253230--14253270 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14253220 AGGGTAACAG
*
14253230 GTTTATGAGTTTGGGGTTTAGA
1 GTTTATGAGTTTAGGGTTTAGA
14253252 GTTTA-GAGTTTAGGGTTTA
1 GTTTATGAGTTTAGGGTTTA
14253271 TGATTTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (22 bp):
GTTTATGAGTTTAGGGTTTAGA
Found at i:14253784 original size:14 final size:14
Alignment explanation
Indices: 14253765--14253792 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14253755 GTATCAAAAT
14253765 TTTAAATAATATTA
1 TTTAAATAATATTA
14253779 TTTAAATAATATTA
1 TTTAAATAATATTA
14253793 ATAATGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAAATAATATTA
Found at i:14254077 original size:84 final size:82
Alignment explanation
Indices: 14253945--14254175 Score: 336
Period size: 84 Copynumber: 2.8 Consensus size: 82
14253935 GCGTTTGGTC
*
14253945 AAAAACGCCGCAAAAAATATATTTAAAATTTAACAAAACGGATACGTTTCATTGATGAATTAAAT
1 AAAAACGCCGCAAAAAATATATTAAAAATTTAACAAAACGG-TACGTTTCATTGATGAATTAAAT
*
14254010 ATCAGTGGCGTTTTGTAT
65 ATCAGTGGCGTTTTCTAT
* * *
14254028 ACAAACGCCGCAAAAAAATATATTAAAAATTTAATAAAACGGTGTCGTTTCATTGATGAATTAAA
1 AAAAACGCCGC-AAAAAATATATTAAAAATTTAACAAAACGGT-ACGTTTCATTGATGAATTAAA
*
14254093 TATTAGTGGCGTTTTCTAT
64 TATCAGTGGCGTTTTCTAT
* * * *
14254112 AAAAATGCCGCAAAAAATATATTAAAAATTTAACAAAATGGCACTGTTTCATTGACGAATTAAA
1 AAAAACGCCGCAAAAAATATATTAAAAATTTAACAAAACGGTAC-GTTTCATTGATGAATTAAA
14254176 GCAAAAGTTA
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
82 1 0.01
83 57 0.43
84 74 0.56
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (82 bp):
AAAAACGCCGCAAAAAATATATTAAAAATTTAACAAAACGGTACGTTTCATTGATGAATTAAATA
TCAGTGGCGTTTTCTAT
Found at i:14256643 original size:21 final size:21
Alignment explanation
Indices: 14256619--14256662 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
14256609 TAGTTGGAGT
14256619 TTCTAGTTTTATAGTTTCTAA
1 TTCTAGTTTTATAGTTTCTAA
14256640 TTCTAGTTTTATAGTTTCTAA
1 TTCTAGTTTTATAGTTTCTAA
14256661 TT
1 TT
14256663 TTACCCGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.59
Consensus pattern (21 bp):
TTCTAGTTTTATAGTTTCTAA
Found at i:14256744 original size:33 final size:33
Alignment explanation
Indices: 14256702--14256767 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
14256692 TGATTCCTAT
14256702 ATTTTGGTCATCCAAATTATATTTTAAAGTATA
1 ATTTTGGTCATCCAAATTATATTTTAAAGTATA
14256735 ATTTTGGTCATCCAAATTATATTTTAAAGTATA
1 ATTTTGGTCATCCAAATTATATTTTAAAGTATA
14256768 GATCAGGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (33 bp):
ATTTTGGTCATCCAAATTATATTTTAAAGTATA
Found at i:14258996 original size:111 final size:111
Alignment explanation
Indices: 14258863--14259081 Score: 429
Period size: 111 Copynumber: 2.0 Consensus size: 111
14258853 AACTGATAGG
*
14258863 TCAAATGTGATGGTTGAATGGTACATCGTGTAACTAATACTTTAATGATTCAATTACAGATATCA
1 TCAAATGTGATGGTTGAATGGTACAGCGTGTAACTAATACTTTAATGATTCAATTACAGATATCA
14258928 GAAATTAAGAGTTATAAGCATGAAATGTTAATTATAGAAGAATGAT
66 GAAATTAAGAGTTATAAGCATGAAATGTTAATTATAGAAGAATGAT
14258974 TCAAATGTGATGGTTGAATGGTACAGCGTGTAACTAATACTTTAATGATTCAATTACAGATATCA
1 TCAAATGTGATGGTTGAATGGTACAGCGTGTAACTAATACTTTAATGATTCAATTACAGATATCA
14259039 GAAATTAAGAGTTATAAGCATGAAATGTTAATTATAGAAGAAT
66 GAAATTAAGAGTTATAAGCATGAAATGTTAATTATAGAAGAAT
14259082 ATTTTTATAT
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 107 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (111 bp):
TCAAATGTGATGGTTGAATGGTACAGCGTGTAACTAATACTTTAATGATTCAATTACAGATATCA
GAAATTAAGAGTTATAAGCATGAAATGTTAATTATAGAAGAATGAT
Found at i:14264293 original size:25 final size:25
Alignment explanation
Indices: 14264259--14264345 Score: 90
Period size: 25 Copynumber: 3.5 Consensus size: 25
14264249 TATTGATTCA
*
14264259 AGCTCTTATGAGCTTACCGA-TACTC
1 AGCTCATATGAGCTTACC-ATTACTC
*
14264284 AGCTCATATGAGCTTACCATTATTC
1 AGCTCATATGAGCTTACCATTACTC
* *
14264309 AGCTCAGAAGAGCTTACCATTTA-TC
1 AGCTCATATGAGCTTACCA-TTACTC
*
14264334 -GCTCGTATGAGC
1 AGCTCATATGAGC
14264346 ATACATGTAC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
24 10 0.19
25 40 0.75
26 3 0.06
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (25 bp):
AGCTCATATGAGCTTACCATTACTC
Found at i:14271898 original size:26 final size:25
Alignment explanation
Indices: 14271835--14271902 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
14271825 TATCGATTCA
* *
14271835 AGCTCTTATGAGCTTACCGATACTC
1 AGCTCATAAGAGCTTACCGATACTC
* * *
14271860 AGCTCATATGAGCTTACCGTTATTTC
1 AGCTCATAAGAGCTTACCGATA-CTC
14271886 AGCTCGA-AAGAGCTTAC
1 AGCTC-ATAAGAGCTTAC
14271903 TGTTTATCGC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 20 0.54
26 16 0.43
27 1 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
AGCTCATAAGAGCTTACCGATACTC
Found at i:14276359 original size:69 final size:69
Alignment explanation
Indices: 14276248--14276674 Score: 356
Period size: 69 Copynumber: 6.2 Consensus size: 69
14276238 AAATGTTACC
* * *
14276248 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTTCAGCATGGTTAGCAAGAACAAAGCTCC
1 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTCC
*
14276313 CAGT
66 CAAT
* * * * *
14276317 TGTAAAATTAAGGTTTGCAGGTGAAGAGCCGCGACCTCCAGCACAAGTAATG--AGAGCAAAGCT
1 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCA-TAGTTA-GCAAGAGCAAAGCT
* **
14276380 CCTAGC
64 CCCAAT
* * * * * * * *
14276386 TATAAAATTAAGGGTTGCAGGCGAAGAGGCACAACCTCCAGCATAGGTAGCGAGAGCAAAGTTCC
1 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTCC
14276451 CAAT
66 CAAT
* ** * * *
14276455 TGTAAAATTAAGGTTCACAGGCGAAGAGGTGTAACCTCCAGCACAGTTAGCAAGAGCAAAGCTCT
1 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTCC
14276520 CAAT
66 CAAT
** * * * * * **
14276524 TGTAAAATTAAGGCCTATAGGCGAAGAGCCACGACCTGCAACATAGTTAGTGAGAGCAAAGCTCC
1 TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTCC
14276589 C-AT
66 CAAT
* ** * * *** * * * * * *
14276592 CTGTAAAACTAAGGTTCGCAGGTGAAGTGCCATGACCTCTAACACAGTTAGCGAGGGAAAAGCTC
1 -TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTC
*
14276657 CCAAC
65 CCAAT
14276662 TGTAAAATTAAGG
1 TGTAAAATTAAGG
14276675 ACCCCAGGCA
Statistics
Matches: 285, Mismatches: 67, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
67 1 0.00
68 5 0.02
69 274 0.96
70 4 0.01
71 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (69 bp):
TGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTCCAGCATAGTTAGCAAGAGCAAAGCTCC
CAAT
Found at i:14276630 original size:138 final size:135
Alignment explanation
Indices: 14276247--14276674 Score: 444
Period size: 138 Copynumber: 3.1 Consensus size: 135
14276237 AAAATGTTAC
* * * * * *
14276247 CTGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTTCAGCATGGTTAGCAAGAACAAAGCTC
1 CTGTAAAATTAAGGCTTACAGGCGAAGAGCCACAACCTCCAGCATAGTTAGCGAGAGCAAAGCTC
* * *
14276312 CCAGTTGTAAAATTAAGGTTTGCAGGTGAAGAGCCGCGACCTCCAGCACAAGTAATG-AGAGCAA
66 CCA-TTGTAAAATTAAGGTTCGCAGGTGAAGAGCCGTGACCTCCAGCAC-AGTTA-GCAGAGCAA
*
14276376 AGCTCCTAG
128 AGCTCC-AA
* * * * * *
14276385 CTATAAAATTAAGGGTTGCAGGCGAAGAGGCACAACCTCCAGCATAGGTAGCGAGAGCAAAGTTC
1 CTGTAAAATTAAGGCTTACAGGCGAAGAGCCACAACCTCCAGCATAGTTAGCGAGAGCAAAGCTC
* * ** *
14276450 CCAATTGTAAAATTAAGGTTCACAGGCGAAGAGGTGTAACCTCCAGCACAGTTAGCAAGAGCAAA
66 CC-ATTGTAAAATTAAGGTTCGCAGGTGAAGAGCCGTGACCTCCAGCACAGTTAGC-AGAGCAAA
14276515 GCTCTCAA
129 GCTC-CAA
* * * * * * *
14276523 TTGTAAAATTAAGGCCTATAGGCGAAGAGCCACGACCTGCAACATAGTTAGTGAGAGCAAAGCTC
1 CTGTAAAATTAAGGCTTACAGGCGAAGAGCCACAACCTCCAGCATAGTTAGCGAGAGCAAAGCTC
* * * * * * *
14276588 CCATCTGTAAAACTAAGGTTCGCAGGTGAAGTGCCATGACCTCTAACACAGTTAGCGAGGGAAAA
66 CCAT-TGTAAAATTAAGGTTCGCAGGTGAAGAGCCGTGACCTCCAGCACAGTTAGC-AGAGCAAA
14276653 GCTCCCAA
129 GCT-CCAA
14276661 CTGTAAAATTAAGG
1 CTGTAAAATTAAGG
14276675 ACCCCAGGCA
Statistics
Matches: 237, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
136 1 0.00
137 6 0.03
138 227 0.96
139 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (135 bp):
CTGTAAAATTAAGGCTTACAGGCGAAGAGCCACAACCTCCAGCATAGTTAGCGAGAGCAAAGCTC
CCATTGTAAAATTAAGGTTCGCAGGTGAAGAGCCGTGACCTCCAGCACAGTTAGCAGAGCAAAGC
TCCAA
Found at i:14276646 original size:207 final size:206
Alignment explanation
Indices: 14276247--14276674 Score: 491
Period size: 207 Copynumber: 2.1 Consensus size: 206
14276237 AAAATGTTAC
* * **
14276247 CTGTAAAATTAAGGTTTACAGGCGAAGAGCCGCAACCTTCAGCATGGTTAGCAAGAACAAAGCTC
1 CTGTAAAATTAAGGTTCACAGGCGAAGAGCCGCAACCTCCAGCACAGTTAGCAAGAACAAAGCTC
* ** * * *
14276312 CCAGTTGTAAAATTAAGGTTTGCAGGTGAAGAGCCGCGACCTCCAGCACAAGTAATGAGAGCAAA
66 CCAATTGTAAAATTAAGGCCTACAGGCGAAGAGCCACGACCTCCA-CACAAGTAATGAGAGCAAA
* * * * *
14276377 GCTCCTAGCTATAAAATTAAGGGTTGCAGGCGAAGAGGCACAACCTCCAGCATAGGTAGCGAGAG
130 GCTCCCAGCTATAAAACTAAGGGTTGCAGGCGAAGAGCCACAACCTCCAACACAGGTAGCGAGAG
* *
14276442 CAAAGTTCCCAA
195 AAAAGCTCCCAA
* ** * *
14276454 TTGTAAAATTAAGGTTCACAGGCGAAGAGGTGTAACCTCCAGCACAGTTAGCAAGAGCAAAGCTC
1 CTGTAAAATTAAGGTTCACAGGCGAAGAGCCGCAACCTCCAGCACAGTTAGCAAGAACAAAGCTC
* * * *
14276519 TCAATTGTAAAATTAAGGCCTATAGGCGAAGAGCCACGACCTGCA-ACATAGTTAGTGAGAGCAA
66 CCAATTGTAAAATTAAGGCCTACAGGCGAAGAGCCACGACCTCCACACA-AG-TAATGAGAGCAA
* * * * ** * *
14276583 AGCTCCCATCTGTAAAACTAA-GGTTCGCAGGTGAAGTGCCATGACCTCTAACACAGTTAGCGAG
129 AGCTCCCAGCTATAAAACTAAGGGTT-GCAGGCGAAGAGCCACAACCTCCAACACAGGTAGCGAG
*
14276647 GGAAAAGCTCCCAA
193 AGAAAAGCTCCCAA
14276661 CTGTAAAATTAAGG
1 CTGTAAAATTAAGG
14276675 ACCCCAGGCA
Statistics
Matches: 182, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
205 3 0.02
206 6 0.03
207 173 0.95
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (206 bp):
CTGTAAAATTAAGGTTCACAGGCGAAGAGCCGCAACCTCCAGCACAGTTAGCAAGAACAAAGCTC
CCAATTGTAAAATTAAGGCCTACAGGCGAAGAGCCACGACCTCCACACAAGTAATGAGAGCAAAG
CTCCCAGCTATAAAACTAAGGGTTGCAGGCGAAGAGCCACAACCTCCAACACAGGTAGCGAGAGA
AAAGCTCCCAA
Found at i:14276692 original size:138 final size:138
Alignment explanation
Indices: 14276295--14276749 Score: 328
Period size: 138 Copynumber: 3.3 Consensus size: 138
14276285 TCAGCATGGT
* * * * * *** *
14276295 TAGCAAGAACAAAGCTCCCAGT-TGTAAAATTAAGGTTTGCAGGTGAAGAGCCGCGACCTCCAGC
1 TAGCGAGAGCAAAGCTCCCA-TCTGTAAAACTAAGGTTCGCAGGCGAAGAGCCATAACCTCCAAC
* * * * * ** * * * * *
14276359 ACAAGTAATG--AGAGCAAAGCTCCTAGCTATAAAATTAAGGGTTGCAGGCGAAGAGGCACAACC
65 AC-AGTTA-GCAAGAGAAAAGCTCCCAACTGTAAAATTAAGGCCTACAGGCAAAAAGCCACGACC
* * *
14276422 TCCAGCATAGG
128 TCTAACATAGC
* * * *** *
14276433 TAGCGAGAGCAAAGTTCCCAAT-TGTAAAATTAAGGTTCACAGGCGAAGAGGTGTAACCTCCAGC
1 TAGCGAGAGCAAAGCTCCC-ATCTGTAAAACTAAGGTTCGCAGGCGAAGAGCCATAACCTCCAAC
* * * * * *
14276497 ACAGTTAGCAAGAGCAAAGCTCTCAATTGTAAAATTAAGGCCTATAGGCGAAGAGCCACGACCTG
65 ACAGTTAGCAAGAGAAAAGCTCCCAACTGTAAAATTAAGGCCTACAGGCAAAAAGCCACGACCT-
*
14276562 C-AACATAGT
129 CTAACATAGC
* * * * *
14276571 TAGTGAGAGCAAAGCTCCCATCTGTAAAACTAAGGTTCGCAGGTGAAGTGCCATGACCTCTAACA
1 TAGCGAGAGCAAAGCTCCCATCTGTAAAACTAAGGTTCGCAGGCGAAGAGCCATAACCTCCAACA
* * * *
14276636 CAGTTAGCGAGGGAAAAGCTCCCAACTGTAAAATTAAGGACC-CCAGGCAAAAAGCCATGACCTC
66 CAGTTAGCAAGAGAAAAGCTCCCAACTGTAAAATTAAGG-CCTACAGGCAAAAAGCCACGACCTC
* * *
14276700 TAGCACAAC
130 TAACATAGC
* * * *
14276709 TAGCGAGAGCAAAGCTCCTAGCTATAAAACCAAGGTTCGCA
1 TAGCGAGAGCAAAGCTCCCATCTGTAAAACTAAGGTTCGCA
14276750 TAAAAAAATG
Statistics
Matches: 255, Mismatches: 55, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
136 1 0.00
137 7 0.03
138 243 0.95
139 4 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (138 bp):
TAGCGAGAGCAAAGCTCCCATCTGTAAAACTAAGGTTCGCAGGCGAAGAGCCATAACCTCCAACA
CAGTTAGCAAGAGAAAAGCTCCCAACTGTAAAATTAAGGCCTACAGGCAAAAAGCCACGACCTCT
AACATAGC
Found at i:14276693 original size:69 final size:68
Alignment explanation
Indices: 14276368--14276726 Score: 270
Period size: 69 Copynumber: 5.2 Consensus size: 68
14276358 CACAAGTAAT
* * * *** * ** * * * *
14276368 GAGAGCAAAGCTCCTAGCTATAAAATTAAGGGTTGCAGGCGAAGAGGCACAACCTCCAGCATAGG
1 GAGAGCAAAGCTCCCAACTGTAAAATTAA-GGCCACAGGCGAAGAGCCATGACCTCTAACACAGT
14276433 TAGC
65 TAGC
* * * *** * * *
14276437 GAGAGCAAAGTTCCCAATTGTAAAATTAAGGTTCACAGGCGAAGAGGTGTAACCTCCAGCACAGT
1 GAGAGCAAAGCTCCCAACTGTAAAATTAAGG-CCACAGGCGAAGAGCCATGACCTCTAACACAGT
14276502 TAGC
65 TAGC
* * * * * *
14276506 AAGAGCAAAGCTCTCAATTGTAAAATTAAGGCCTATAGGCGAAGAGCCACGACCTGC-AACATAG
1 GAGAGCAAAGCTCCCAACTGTAAAATTAAGGCC-ACAGGCGAAGAGCCATGACCT-CTAACACAG
*
14276570 TTAGT
64 TTAGC
* * * * * *
14276575 GAGAGCAAAGCTCCCATCTGTAAAACTAAGGTTCGCAGGTGAAGTGCCATGACCTCTAACACAGT
1 GAGAGCAAAGCTCCCAACTGTAAAATTAAGG-CCACAGGCGAAGAGCCATGACCTCTAACACAGT
14276640 TAGC
65 TAGC
* * * * * * **
14276644 GAGGGAAAAGCTCCCAACTGTAAAATTAAGGACCCCAGGCAAAAAGCCATGACCTCTAGCACAAC
1 GAGAGCAAAGCTCCCAACTGTAAAATTAAGG-CCACAGGCGAAGAGCCATGACCTCTAACACAGT
14276709 TAGC
65 TAGC
14276713 GAGAGCAAAGCTCC
1 GAGAGCAAAGCTCC
14276727 TAGCTATAAA
Statistics
Matches: 231, Mismatches: 54, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
68 4 0.02
69 225 0.97
70 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (68 bp):
GAGAGCAAAGCTCCCAACTGTAAAATTAAGGCCACAGGCGAAGAGCCATGACCTCTAACACAGTT
AGC
Found at i:14279479 original size:24 final size:24
Alignment explanation
Indices: 14279452--14279501 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
14279442 GAATTGTTAG
14279452 GATTTGGGAACCAATAGAACGAAT
1 GATTTGGGAACCAATAGAACGAAT
* * * *
14279476 GATTTTGGACCCGATAGAATGAAT
1 GATTTGGGAACCAATAGAACGAAT
14279500 GA
1 GA
14279502 CTGATAGGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (24 bp):
GATTTGGGAACCAATAGAACGAAT
Found at i:14279606 original size:22 final size:22
Alignment explanation
Indices: 14279581--14279624 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14279571 TTAGCTGAGG
* *
14279581 ACCTCGCAGGACTGCAAGATGT
1 ACCTCACAGGAATGCAAGATGT
14279603 ACCTCACAGGAATGCAAGATGT
1 ACCTCACAGGAATGCAAGATGT
14279625 TCGCAGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
ACCTCACAGGAATGCAAGATGT
Found at i:14282405 original size:39 final size:39
Alignment explanation
Indices: 14282350--14282424 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
14282340 TAATTGTCGA
14282350 ATTATGATAATACAATTTAACTACCAAACAAACTTCCTT
1 ATTATGATAATACAATTTAACTACCAAACAAACTTCCTT
* *
14282389 ATTATGATAATGCAATTTAACTGCCAAACAAACTTC
1 ATTATGATAATACAATTTAACTACCAAACAAACTTC
14282425 TGCCAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (39 bp):
ATTATGATAATACAATTTAACTACCAAACAAACTTCCTT
Found at i:14282864 original size:16 final size:18
Alignment explanation
Indices: 14282833--14282868 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
14282823 TAACAATTCT
14282833 TTATATTATAATTTTTTA
1 TTATATTATAATTTTTTA
14282851 TTATA-TAT-ATTTTTTA
1 TTATATTATAATTTTTTA
14282867 TT
1 TT
14282869 TATCTATATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 3 0.17
18 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATATTATAATTTTTTA
Found at i:14282871 original size:17 final size:17
Alignment explanation
Indices: 14282832--14282877 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
14282822 ATAACAATTC
14282832 TTTATATTATAATTTTTTA
1 TTTATA-TAT-ATTTTTTA
14282851 -TTATATATATTTTTTA
1 TTTATATATATTTTTTA
*
14282867 TTTATCTATAT
1 TTTATATATAT
14282878 CTTAGTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 8 0.32
17 12 0.48
18 5 0.20
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATATATTTTTTA
Found at i:14288677 original size:25 final size:25
Alignment explanation
Indices: 14288643--14288690 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14288633 ACGCATGATA
14288643 TGATAACATTAAAAGTAATTTTGAC
1 TGATAACATTAAAAGTAATTTTGAC
14288668 TGATAACATTAAAAGTAATTTTG
1 TGATAACATTAAAAGTAATTTTG
14288691 TTTATGTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (25 bp):
TGATAACATTAAAAGTAATTTTGAC
Found at i:14302454 original size:71 final size:71
Alignment explanation
Indices: 14302368--14302509 Score: 266
Period size: 71 Copynumber: 2.0 Consensus size: 71
14302358 GAGTTCTTTT
*
14302368 TATTTGGGTTATGACTAGTTTCTTTATAATAAGGAACTAACTTTTTGTTGACATATTTTCTAGGT
1 TATTTGGGTTATGACTAGTTTCTTTATAATAAGAAACTAACTTTTTGTTGACATATTTTCTAGGT
14302433 TGAAAA
66 TGAAAA
*
14302439 TATTTGGGTTATGACTGGTTTCTTTATAATAAGAAACTAACTTTTTGTTGACATATTTTCTAGGT
1 TATTTGGGTTATGACTAGTTTCTTTATAATAAGAAACTAACTTTTTGTTGACATATTTTCTAGGT
14302504 TGAAAA
66 TGAAAA
14302510 AGGAAGGGCA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (71 bp):
TATTTGGGTTATGACTAGTTTCTTTATAATAAGAAACTAACTTTTTGTTGACATATTTTCTAGGT
TGAAAA
Found at i:14303168 original size:39 final size:39
Alignment explanation
Indices: 14303103--14303253 Score: 151
Period size: 39 Copynumber: 3.7 Consensus size: 39
14303093 ACGTTGTTTG
* * *
14303103 AAATTATA-TTTAAGTCTTTAAATAAATTATATTAAGTT
1 AAATTATATTTTAAGCCTCTAATTAAATTATATTAAGTT
* * *
14303141 AAATTATATTTTAAACCTCTAAGTAAATTATGTTAAGTT
1 AAATTATATTTTAAGCCTCTAATTAAATTATATTAAGTT
* *
14303180 AACAATTAAATTATGTTGAACCCTCTAATTAAATTATATTAAGTT
1 -A-AATT--A-TAT-TTTAAGCCTCTAATTAAATTATATTAAGTT
* *
14303225 ACATTATATTTTAAGTCTCTAATTAAATT
1 AAATTATATTTTAAGCCTCTAATTAAATT
14303254 TGTGTGATGA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
38 8 0.09
39 42 0.45
40 4 0.04
41 5 0.05
43 4 0.04
44 4 0.04
45 26 0.28
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (39 bp):
AAATTATATTTTAAGCCTCTAATTAAATTATATTAAGTT
Found at i:14318595 original size:7 final size:7
Alignment explanation
Indices: 14318584--14318617 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
14318574 GTTTTGTTAT
*
14318584 AAAATTT
1 AAAATTC
14318591 AAAATTC
1 AAAATTC
14318598 AAAATTC
1 AAAATTC
14318605 AAAATTC
1 AAAATTC
14318612 AAAATT
1 AAAATT
14318618 TTTTTGTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (7 bp):
AAAATTC
Found at i:14323036 original size:18 final size:16
Alignment explanation
Indices: 14323007--14323129 Score: 56
Period size: 17 Copynumber: 7.2 Consensus size: 16
14322997 TCCCATATCC
14323007 TTTAATTAAATTCTATT
1 TTTAATTAAATT-TATT
14323024 TTTAATATAAATTTATT
1 TTTAAT-TAAATTTATT
* *
14323041 ACTTTAAATATAA-TTATCC
1 --TTTAATTA-AATTTAT-T
*
14323060 TATAATT-AA-TTA-T
1 TTTAATTAAATTTATT
*
14323073 TTTAATTTTAATTTATT
1 TTTAA-TTAAATTTATT
* *
14323090 GCTTTAAATATAATTTATCA
1 --TTTAATTA-AATTTAT-T
14323110 TTTAATTAAATTCTATT
1 TTTAATTAAATT-TATT
14323127 TTT
1 TTT
14323130 TATTTTAAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 28
0.68 0.09 0.23
Matches are distributed among these distances:
13 4 0.05
14 2 0.02
15 7 0.09
16 3 0.04
17 23 0.28
18 23 0.28
19 19 0.23
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.56
Consensus pattern (16 bp):
TTTAATTAAATTTATT
Found at i:14323055 original size:19 final size:18
Alignment explanation
Indices: 14323006--14323107 Score: 60
Period size: 19 Copynumber: 5.9 Consensus size: 18
14322996 GTCCCATATC
*
14323006 CTTTAATTA-AATTCTATT
1 CTTTAAATATAATT-TATT
14323024 -TTT-AATATAAATTTATT
1 CTTTAAATAT-AATTTATT
*
14323041 ACTTTAAATATAA-TTATC
1 -CTTTAAATATAATTTATT
*
14323059 CTAT-AAT-TAA-TTA-T
1 CTTTAAATATAATTTATT
* *
14323073 -TTTAATTTTAATTTATT
1 CTTTAAATATAATTTATT
14323090 GCTTTAAATATAATTTAT
1 -CTTTAAATATAATTTAT
14323108 CATTTAATTA
Statistics
Matches: 65, Mismatches: 8, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
13 2 0.03
14 2 0.03
15 9 0.14
16 9 0.14
17 11 0.17
18 8 0.12
19 19 0.29
20 5 0.08
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (18 bp):
CTTTAAATATAATTTATT
Found at i:14323131 original size:55 final size:53
Alignment explanation
Indices: 14323002--14323154 Score: 188
Period size: 49 Copynumber: 2.9 Consensus size: 53
14322992 GCCCGTCCCA
* * *
14323002 TATCCTTTAATTAAATTCTATTTTTAATATAAATTTATTACTTTAAATATAAT
1 TATCCTTTAATTAAATTCTATTTTTAATTTTAATTTATTGCTTTAAATATAAT
*
14323055 TATCCTATAATT-AA-T-TA-TTTTAATTTTAATTTATTGCTTTAAATATAATT
1 TATCCTTTAATTAAATTCTATTTTTAATTTTAATTTATTGCTTTAAATATAA-T
* * * *
14323105 TATCATTTAATTAAATTCTATTTTTTATTTTAAATTTCTTGTTTTAAATA
1 TATCCTTTAATTAAATTCTATTTTTAATTTT-AATTTATTGCTTTAAATA
14323155 ATTTTTTAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
49 28 0.33
50 13 0.15
51 3 0.04
52 3 0.04
53 13 0.15
54 9 0.11
55 16 0.19
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.56
Consensus pattern (53 bp):
TATCCTTTAATTAAATTCTATTTTTAATTTTAATTTATTGCTTTAAATATAAT
Found at i:14324824 original size:11 final size:11
Alignment explanation
Indices: 14324808--14324859 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
14324798 TATCTTTAAT
14324808 AATAATAATAC
1 AATAATAATAC
14324819 AATAATAATAC
1 AATAATAATAC
* **
14324830 TTATAAT-ATTT
1 -AATAATAATAC
14324841 AATAATAATAC
1 AATAATAATAC
14324852 AATAATAA
1 AATAATAA
14324860 AAATATGTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 5 0.15
11 23 0.70
12 5 0.15
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAATAC
Found at i:14324849 original size:33 final size:34
Alignment explanation
Indices: 14324784--14324859 Score: 111
Period size: 33 Copynumber: 2.2 Consensus size: 34
14324774 AAATATATTG
*
14324784 AATAATAATACTTATATCTTTAATAATAATAATAC
1 AATAATAATACTTATATCATT-ATAATAATAATAC
14324819 AATAATAATACTTATAAT-ATT-TAATAATAATAC
1 AATAATAATACTTAT-ATCATTATAATAATAATAC
14324852 AATAATAA
1 AATAATAA
14324860 AAATATGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
33 20 0.51
35 17 0.44
36 2 0.05
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (34 bp):
AATAATAATACTTATATCATTATAATAATAATAC
Found at i:14325636 original size:14 final size:14
Alignment explanation
Indices: 14325617--14325644 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14325607 ACGAAATCCC
14325617 ATATGTTCTTGCAT
1 ATATGTTCTTGCAT
14325631 ATATGTTCTTGCAT
1 ATATGTTCTTGCAT
14325645 TCGACCAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
ATATGTTCTTGCAT
Found at i:14329400 original size:22 final size:22
Alignment explanation
Indices: 14329370--14329417 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
14329360 TTTATTTTAT
*
14329370 TTTTTTTCCATTATTAGTGTTA
1 TTTTATTCCATTATTAGTGTTA
14329392 TTTTATTCCATTATTAGTGTTA
1 TTTTATTCCATTATTAGTGTTA
14329414 TTTT
1 TTTT
14329418 TTTTAAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65
Consensus pattern (22 bp):
TTTTATTCCATTATTAGTGTTA
Found at i:14340058 original size:143 final size:142
Alignment explanation
Indices: 14339739--14340204 Score: 596
Period size: 143 Copynumber: 3.3 Consensus size: 142
14339729 ACTACGGTGA
* * *
14339739 ATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGATTTAAGCCACCAGCCTTATCTTCCTGAAGTCG
1 ATCTTATCTTCC-TGAAGTTGCAGTAGAGCAGATTGAAGCCACCAGCCTTATC-TCCTGAAGTTG
* * * *
14339803 CAGCAGAGCAGACTGAAGGTAATGAATCTTATTTCCCTGACGTTGTAGT-GAACAGATTAAAGCT
64 CAGCGGAGCAGACTGAAGATAACGAATCTTATTTCCCTGGCGTTGTAGTGGAACAGATTAAAGCT
**
14339867 ACAAATTATGATGG
129 ACAAATTATGGCGG
*
14339881 ATCTTATCTTCCTGAAGTTGCAGTAGAGTAGATTGAAGCCACCAGCCTTATCTCCGTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACCAGCCTTATCTCC-TGAAGTTGC
* * * * *
14339946 AGCGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACATATTAAAGCTA
65 AGCGGAGCAGACTGAAGATAACGAATCTTATTTCCCTGGCGTTGTAGTGGAACAGATTAAAGCTA
14340011 CAAATTATGGCGG
130 CAAATTATGGCGG
* * * ** *
14340024 ATCTTATC-TCCTTGAAGTTGTAATAGAGCAGATTGATGTTACCAGCCTTATCTCCCTGAAATTG
1 ATCTTATCTTCC-TGAAGTTGCAGTAGAGCAGATTGAAGCCACCAGCCTTATCT-CCTGAAGTTG
* * * *
14340088 CAGCGGAGCAGACTGAAGACATCAAATCTTATTTCCCTGGCGTTGTAGTGGAATAGATTAAAGCT
64 CAGCGGAGCAGACTGAAGATAACGAATCTTATTTCCCTGGCGTTGTAGTGGAACAGATTAAAGCT
14340153 ACAAATTATGGCGG
129 ACAAATTATGGCGG
* * ** *
14340167 ACCTTATCTTCCTGAAGTTACAGCGGAGCAGACTGAAG
1 ATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAG
14340205 ACAACGAATC
Statistics
Matches: 280, Mismatches: 38, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
141 3 0.01
142 96 0.34
143 176 0.63
144 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (142 bp):
ATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCCACCAGCCTTATCTCCTGAAGTTGCA
GCGGAGCAGACTGAAGATAACGAATCTTATTTCCCTGGCGTTGTAGTGGAACAGATTAAAGCTAC
AAATTATGGCGG
Found at i:14340199 original size:99 final size:99
Alignment explanation
Indices: 14340069--14340297 Score: 350
Period size: 99 Copynumber: 2.3 Consensus size: 99
14340059 ATGTTACCAG
* * * *
14340069 CCTTATCTCCCTGAAATTGCAGCGGAGCAGACTGAAGACATCAAATCTTATTTCCCTGGCGTTGT
1 CCTTATCTTCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTGGCATTGT
*
14340134 AGTGGAATAGATTAAAGCTACAAATTATGGCGGA
66 AATGGAATAGATTAAAGCTACAAATTATGGCGGA
* * *
14340168 CCTTATCTTCCTGAAGTTACAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGGTATTGT
1 CCTTATCTTCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTGGCATTGT
*
14340233 AATGGAATAGATTAAAGCTACAAATTATGGTGGA
66 AATGGAATAGATTAAAGCTACAAATTATGGCGGA
* * *
14340267 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGA
1 CCTTATCTTCCTGAAGTTGCAGCGGAGCAGA
14340298 TCGAAACCAC
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 117 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (99 bp):
CCTTATCTTCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTGGCATTGT
AATGGAATAGATTAAAGCTACAAATTATGGCGGA
Found at i:14340331 original size:44 final size:45
Alignment explanation
Indices: 14340268--14340373 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 45
14340258 TATGGTGGAT
* *
14340268 CTTATCTTCCTAAAGTTGCAGTGGAGCAGATCGAAACCAC-AATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAACCACTAATC
* * **
14340312 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACTAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAACCACTAATC
*
14340357 CTTATCTCCTTGAAGTT
1 CTTATCTCCCTGAAGTT
14340374 ATAGCGGAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 34 0.63
45 20 0.37
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAACCACTAATC
Found at i:14340396 original size:242 final size:242
Alignment explanation
Indices: 14339926--14340398 Score: 549
Period size: 242 Copynumber: 2.0 Consensus size: 242
14339916 AAGCCACCAG
* * *
14339926 CCTTATCTCCGTGAAGTTGCAGCGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGGCATTGC
1 CCTTATCTCCGTGAAGTTACAGCGGAGCAGACTAAAGACAACGAATCTTATTTCCCTGGCATTGC
* * * *
14339991 AGTGGAACATATTAAAGCTACAAATTATGGCGGATCTTATCTCCTTGAAGTTGTAATAGAGCAGA
66 AATGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTCCTTAAAGTTGCAATAGAGCAGA
* **** * *
14340056 TTGATGTTACCAGCCTTATCTCCCTGAAATTGCAGCGGAGCAGACTGAAGACATCAAATCTTATT
131 TCGAAACCACAAGCCTTATCTCCCTGAAATTGCAGCGGAGCAGACTGAAGACATCAAATCTTATC
** * * *
14340121 TCCCTGGCGTTGTAGTGGAATAGATTAAAGCTACAAATTATGGCGGA
196 TCCCTGAAGTTATAGCGGAATAGATCAAAGCTACAAATTATGGCGGA
* *
14340168 CCTTATCTTCC-TGAAGTTACAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGGTATTG
1 CCTTATC-TCCGTGAAGTTACAGCGGAGCAGACTAAAGACAACGAATCTTATTTCCCTGGCATTG
* * * * *
14340232 TAATGGAATAGATTAAAGCTACAAATTATGGTGGATCTTATCTTCC-TAAAGTTGCAGTGGAGCA
65 CAATGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATC-TCCTTAAAGTTGCAATAGAGCA
* * * ** * *
14340296 GATCGAAACCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-A-TTACTAATCCT
129 GATCGAAACCACAAGCCTTATCTCCCTGAAATTGCAGCGGAGCAGACTGAAGACAT-CAAAT-CT
* * * *
14340359 TATCTCCTTGAAGTTATAGCGGAGTGGATCGAAGCTACAA
192 TATCTCCCTGAAGTTATAGCGGAATAGATCAAAGCTACAA
14340399 GTCTCTTTTC
Statistics
Matches: 190, Mismatches: 37, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
240 1 0.01
241 5 0.03
242 178 0.94
243 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (242 bp):
CCTTATCTCCGTGAAGTTACAGCGGAGCAGACTAAAGACAACGAATCTTATTTCCCTGGCATTGC
AATGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTCCTTAAAGTTGCAATAGAGCAGA
TCGAAACCACAAGCCTTATCTCCCTGAAATTGCAGCGGAGCAGACTGAAGACATCAAATCTTATC
TCCCTGAAGTTATAGCGGAATAGATCAAAGCTACAAATTATGGCGGA
Found at i:14341863 original size:21 final size:22
Alignment explanation
Indices: 14341839--14341879 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14341829 TTAAGTTAAT
14341839 ATTATTT-TTATTTTTATATCC
1 ATTATTTATTATTTTTATATCC
*
14341860 ATTATTTATTTTTTTTATAT
1 ATTATTTATTATTTTTATAT
14341880 ATCTAAATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (22 bp):
ATTATTTATTATTTTTATATCC
Found at i:14342115 original size:18 final size:17
Alignment explanation
Indices: 14342085--14342118 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14342075 TAAATCTATC
14342085 TTATATTAGTTTTTATT
1 TTATATTAGTTTTTATT
*
14342102 TTATCATTATTTTTTAT
1 TTAT-ATTAGTTTTTAT
14342119 ATTGGCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (17 bp):
TTATATTAGTTTTTATT
Found at i:14343746 original size:41 final size:41
Alignment explanation
Indices: 14343701--14343794 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 41
14343691 CATTAGTGGT
* * * *
14343701 GTTTTTTCTATAAACGCTGTAAAAGGTAAAACAATAACGGC
1 GTTTTTCCTATAAAAGCAGCAAAAGGTAAAACAATAACGGC
* * **
14343742 GTTTTACCTATAAAAGCAGCAAAAGTTAAAGTAATAACGGC
1 GTTTTTCCTATAAAAGCAGCAAAAGGTAAAACAATAACGGC
*
14343783 GTTTTTCATATA
1 GTTTTTCCTATA
14343795 GCGCGAATTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (41 bp):
GTTTTTCCTATAAAAGCAGCAAAAGGTAAAACAATAACGGC
Found at i:14350840 original size:23 final size:23
Alignment explanation
Indices: 14350821--14350905 Score: 98
Period size: 23 Copynumber: 3.7 Consensus size: 23
14350811 TATTTTAGTT
*
14350821 TTATCATGTATTTTTATTTAAAG
1 TTATCATGTATTATTATTTAAAG
* *
14350844 TTATCATGTATTATTATTTTGAAT
1 TTATCATGTATTATTA-TTTAAAG
* * * *
14350868 TTATCATCTATGATCATTTAAAT
1 TTATCATGTATTATTATTTAAAG
14350891 TTATCATGTATTATT
1 TTATCATGTATTATT
14350906 TTATGCATCC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 33 0.65
24 18 0.35
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (23 bp):
TTATCATGTATTATTATTTAAAG
Found at i:14350886 original size:24 final size:23
Alignment explanation
Indices: 14350836--14350897 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 23
14350826 ATGTATTTTT
* * * *
14350836 ATTTAAAGTTATCATGTATTATT
1 ATTTAAATTTATCATCTATGATC
*
14350859 ATTTTGAATTTATCATCTATGATC
1 A-TTTAAATTTATCATCTATGATC
14350883 ATTTAAATTTATCAT
1 ATTTAAATTTATCAT
14350898 GTATTATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 14 0.44
24 18 0.56
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTAAATTTATCATCTATGATC
Found at i:14350898 original size:47 final size:47
Alignment explanation
Indices: 14350793--14350905 Score: 131
Period size: 47 Copynumber: 2.4 Consensus size: 47
14350783 TATATTATTC
** * * ** *
14350793 TAAATTTATCAT-TAACATTATTTTAGTTTTATCATGTATTTTTATT
1 TAAATTTATCATGTATTATTATTTTAGATTTATCATCTATGATCATT
*
14350839 TAAAGTTATCATGTATTATTATTTT-GAATTTATCATCTATGATCATT
1 TAAATTTATCATGTATTATTATTTTAG-ATTTATCATCTATGATCATT
14350886 TAAATTTATCATGTATTATT
1 TAAATTTATCATGTATTATT
14350906 TTATGCATCC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
46 12 0.21
47 44 0.79
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (47 bp):
TAAATTTATCATGTATTATTATTTTAGATTTATCATCTATGATCATT
Found at i:14355108 original size:43 final size:44
Alignment explanation
Indices: 14355047--14355142 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 44
14355037 GCATTTTCCC
* * * * *
14355047 ACAAACACTGCTATAGAACATGATCTTTAGCGGCACTTTTA-CT
1 ACAAACGCCGCTAAAGAACATGATCTTTAGCGGCAATTCTAGCT
*
14355090 ACAAACGCCGCTAAAGAACATGATCTTTTGCGGCAATTCTAGCT
1 ACAAACGCCGCTAAAGAACATGATCTTTAGCGGCAATTCTAGCT
14355134 ACAAACGCC
1 ACAAACGCC
14355143 ACAACATGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 35 0.76
44 11 0.24
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (44 bp):
ACAAACGCCGCTAAAGAACATGATCTTTAGCGGCAATTCTAGCT
Found at i:14358724 original size:35 final size:35
Alignment explanation
Indices: 14358685--14358756 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
14358675 GAGAGAAAGA
14358685 AAATCAACACAAGTTTGTTAACACAGTTTGAATTT
1 AAATCAACACAAGTTTGTTAACACAGTTTGAATTT
14358720 AAATCAACACAAGTTTGTTAACACAGTTTGAATTT
1 AAATCAACACAAGTTTGTTAACACAGTTTGAATTT
14358755 AA
1 AA
14358757 TAATCATATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (35 bp):
AAATCAACACAAGTTTGTTAACACAGTTTGAATTT
Found at i:14359478 original size:31 final size:30
Alignment explanation
Indices: 14359421--14359479 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14359411 GTAAATACTC
* *
14359421 AAAATTTGAAGGGTTAAAATGTAAATATGA
1 AAAATTTGAAGGATCAAAATGTAAATATGA
*
14359451 AAAATTTGAAGGATCAATAGTGTAAATAT
1 AAAATTTGAAGGATCAA-AATGTAAATAT
14359480 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.49, C:0.02, G:0.19, T:0.31
Consensus pattern (30 bp):
AAAATTTGAAGGATCAAAATGTAAATATGA
Found at i:14361070 original size:26 final size:26
Alignment explanation
Indices: 14361034--14361090 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
14361024 GCATGAAATG
*
14361034 AATAGCTTGTTGTGAGTAAATAAGTA
1 AATAGCTTGTTGTAAGTAAATAAGTA
14361060 AATAGCTTGTTGTAAGTAAATAAGTA
1 AATAGCTTGTTGTAAGTAAATAAGTA
14361086 AATAG
1 AATAG
14361091 TGGTAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (26 bp):
AATAGCTTGTTGTAAGTAAATAAGTA
Found at i:14361249 original size:249 final size:250
Alignment explanation
Indices: 14360803--14361285 Score: 878
Period size: 249 Copynumber: 1.9 Consensus size: 250
14360793 ACCATGACTG
* * *
14360803 AAGTGAATAGCTTGTTGTGAGTAAATAAGTTAATAGTGGTAATATATATATCAAGGATGTGGAAT
1 AAGTAAATAGCTTGTTGTAAGTAAATAAGTAAATAGTGGTAATATATATATCAAGGATGTGGAAT
14360868 GGAGTGGAGGAGGAGGAAAAATAATATATGTGAATATTCAGCTAATATGAGTTTAATTTAAAATA
66 GGAGT-G-GGAGGAGGAAAAATAATATATGTGAATATTCAGCTAATATGAGTTTAATTTAAAATA
*
14360933 GCTAATTTACATGTTTTAGGTTCAGGGACTAAATTGAATAAAATTAAAATTTTAAGGGTAATTTT
129 GCTAATTTACATGTTTTAGGTTCAGGGACTAAATTGAATAAAAGTAAAATTTTAAGGGTAATTTT
14360998 GTAAAAATGTCAAAAATGGCCAAATTGCATGAAATGAATAGCTTGTTGTGAGTAAAT
194 GTAAAAATGTCAAAAATGGCCAAATTGCATGAAATGAATAGCTTGTTGTGAGTAAAT
14361055 AAGTAAATAGCTTGTTGTAAGTAAATAAGTAAATAGTGGTAATATATATATCAAGGATGTGGAAT
1 AAGTAAATAGCTTGTTGTAAGTAAATAAGTAAATAGTGGTAATATATATATCAAGGATGTGGAAT
* *
14361120 GGAGT-GGAGGAGGAAAAATAATATATGTGAATATTCAGCTAATATGAGTTTATTTTACAATAGC
66 GGAGTGGGAGGAGGAAAAATAATATATGTGAATATTCAGCTAATATGAGTTTAATTTAAAATAGC
*
14361184 TAATTTACATGTTTTTGGTTCAGGGACTAAATTGAATAAAAGTAAAATTTTAAGGGTAATTTTGT
131 TAATTTACATGTTTTAGGTTCAGGGACTAAATTGAATAAAAGTAAAATTTTAAGGGTAATTTTGT
14361249 AAAAATGTCAAAAATGGCCAAATTGCATGAAATGAAT
196 AAAAATGTCAAAAATGGCCAAATTGCATGAAATGAAT
14361286 TGTTTTATCA
Statistics
Matches: 224, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
249 157 0.70
252 67 0.30
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (250 bp):
AAGTAAATAGCTTGTTGTAAGTAAATAAGTAAATAGTGGTAATATATATATCAAGGATGTGGAAT
GGAGTGGGAGGAGGAAAAATAATATATGTGAATATTCAGCTAATATGAGTTTAATTTAAAATAGC
TAATTTACATGTTTTAGGTTCAGGGACTAAATTGAATAAAAGTAAAATTTTAAGGGTAATTTTGT
AAAAATGTCAAAAATGGCCAAATTGCATGAAATGAATAGCTTGTTGTGAGTAAAT
Found at i:14361669 original size:57 final size:57
Alignment explanation
Indices: 14361593--14361701 Score: 175
Period size: 57 Copynumber: 1.9 Consensus size: 57
14361583 GATCCTATCC
*
14361593 TGATATAGCCCTCCCGAAGAATATGTGTGAAAA-GGATATAGCCCGGACGGGTGATCT
1 TGATATAGCCCTCCCGAAGAATATGT-AGAAAATGGATATAGCCCGGACGGGTGATCT
* *
14361650 TGATATAGCCCTCCCGAAGAATATGTAGAAAATGGATTTAGCCCGGATGGGT
1 TGATATAGCCCTCCCGAAGAATATGTAGAAAATGGATATAGCCCGGACGGGT
14361702 AATCCGAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
56 5 0.10
57 43 0.90
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (57 bp):
TGATATAGCCCTCCCGAAGAATATGTAGAAAATGGATATAGCCCGGACGGGTGATCT
Found at i:14361835 original size:67 final size:67
Alignment explanation
Indices: 14361721--14361846 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
14361711 TAGGGTCTGA
*
14361721 ATTTAGCCTGGACTGGTAATCCCTCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCTTGCAGG
1 ATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCTTGCAGG
14361786 GG
66 GG
14361788 ATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTT-AGCGGGAGTGTGCTCTCT
1 ATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCA-CGGGAGTGTGCTCTCT
14361847 GAATTGGGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 1 0.02
67 56 0.98
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (67 bp):
ATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTCTTGCAGG
GG
Found at i:14362017 original size:26 final size:26
Alignment explanation
Indices: 14361959--14362017 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
14361949 ATAAAAATAG
14361959 AAAATGATAAGTACTTGAAATACATA
1 AAAATGATAAGTACTTGAAATACATA
* * * *
14361985 GAAATGATAATTATTTGATATAC-TA
1 AAAATGATAAGTACTTGAAATACATA
14362010 AAATATGA
1 AAA-ATGA
14362018 CATGGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (26 bp):
AAAATGATAAGTACTTGAAATACATA
Found at i:14363510 original size:49 final size:49
Alignment explanation
Indices: 14363449--14363575 Score: 182
Period size: 49 Copynumber: 2.6 Consensus size: 49
14363439 TGTGATTTTT
* *
14363449 GTGTAAGGCCATAGCTGGACTATGGCATCAGTAAGTGATATGTGATTCC
1 GTGTAAGACCATAGCTGGACTATGGCATCAGTAAGTGATATGTGATTAC
** ** *
14363498 GTGTAAGACCATAGCTGGGTTATGGCATTGGTATGTGATATGTGATTAC
1 GTGTAAGACCATAGCTGGACTATGGCATCAGTAAGTGATATGTGATTAC
*
14363547 GTGTAAGACCATAGTTGGACTATGGCATC
1 GTGTAAGACCATAGCTGGACTATGGCATC
14363576 GAGAAAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (49 bp):
GTGTAAGACCATAGCTGGACTATGGCATCAGTAAGTGATATGTGATTAC
Found at i:14367262 original size:67 final size:67
Alignment explanation
Indices: 14367154--14367280 Score: 218
Period size: 67 Copynumber: 1.9 Consensus size: 67
14367144 TTTATATTAC
* * *
14367154 AGGGGATTTAGCCTGGACTGGTAATCCTGCTGTAAGAAATGAGGTTTGCGGGAGTATGCTCTCTT
1 AGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTATGCTCTCTT
14367219 GT
66 GT
*
14367221 AGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTGTGCT
1 AGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTATGCT
14367281 ATCTGAATTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.28
Consensus pattern (67 bp):
AGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTATGCTCTCTT
GT
Found at i:14368563 original size:28 final size:30
Alignment explanation
Indices: 14368509--14368564 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14368499 GGTATTGACT
*
14368509 AAATTATAAATATATGAAAAGTTTAAGGTC
1 AAATTATAAATATATCAAAAGTTTAAGGTC
*
14368539 AAATTGTAAATAT-TCAAAAG-TTAAGG
1 AAATTATAAATATATCAAAAGTTTAAGG
14368565 GATTGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.25
29 6 0.25
30 12 0.50
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (30 bp):
AAATTATAAATATATCAAAAGTTTAAGGTC
Found at i:14378346 original size:13 final size:15
Alignment explanation
Indices: 14378320--14378351 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
14378310 TTGGTTATTT
14378320 TGTGTTTTGTTTTTA
1 TGTGTTTTGTTTTTA
14378335 TGTG-TTTG-TTTTA
1 TGTGTTTTGTTTTTA
14378348 TGTG
1 TGTG
14378352 CAGCGAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 4 0.24
15 4 0.24
ACGTcount: A:0.06, C:0.00, G:0.25, T:0.69
Consensus pattern (15 bp):
TGTGTTTTGTTTTTA
Found at i:14396538 original size:95 final size:94
Alignment explanation
Indices: 14396361--14396793 Score: 326
Period size: 95 Copynumber: 4.6 Consensus size: 94
14396351 CTTTACAAAT
* * * * *
14396361 TTTAGATAAGTGTCTTAAGTGGCTTAGCAGTGTATCTAG-TATTAGACTTAGCGAGCAGTTTCCT
1 TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATATCT-GCTATTAGACTTAGTGAGCAGTTTCCT
* **
14396425 CTCAAG-TTGTCTGTTTTATAACTTCATTGA-A
65 CT-AAGAGTGTCTACTTTATAA-TT-ATTGACA
* * * *
14396456 TTTAGCTAAGTGCCCTAATAGGCTTAGCAGTATATCTGCTATTAGAATTAGTGAGTAGTTTCCTC
1 TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATATCTGCTATTAGACTTAGTGAGCAGTTTCCTC
* * *
14396521 TAAGAGTATCTACTTTATAAATATTGACT
66 TAAGAGTGTCTACTTTATAATTATTGACA
* * * * * ** *
14396550 TTTGGCTAAGTGCCTTAAGAGGC-TAGAAGCA-ATTCTTCTATTACACTTAGTGATTAGTTTCTT
1 TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATA-TCTGCTATTAGACTTAGTGAGCAGTTTCCT
** * * *
14396613 CTCGGTGTGTCTACTTTAAAACTTTGTTGA-A
65 CTAAGAGTGTCTACTTTATAA--TTATTGACA
* * * * *
14396644 TTTAGCTACGTGCCTTAAGAGGCTTAGCAATATA-CTTGCTGTTAGACTTAGTGAACAGTTCCCT
1 TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATATC-TGCTATTAGACTTAGTGAGCAGTTTCCT
* * * * **
14396708 CT-TGAATTGTCTGCTCTATAGA-TATTGATT
65 CTAAG-AGTGTCTACTTTATA-ATTATTGACA
* * **
14396738 TTTGGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTGCTATTAGTTTTAGTGAGC
1 TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATATCTGCTATTAGACTTAGTGAGC
14396794 TTGAAAGGCG
Statistics
Matches: 264, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
92 1 0.00
93 57 0.22
94 94 0.36
95 110 0.42
96 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (94 bp):
TTTAGCTAAGTGCCTTAAGAGGCTTAGCAGTATATCTGCTATTAGACTTAGTGAGCAGTTTCCTC
TAAGAGTGTCTACTTTATAATTATTGACA
Found at i:14396839 original size:20 final size:20
Alignment explanation
Indices: 14396797--14396841 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14396787 AGTGAGCTTG
* *
14396797 AAAGGCGATGTCGAGCATGA
1 AAAGGCAATGTCGAGCATAA
14396817 AAAGGCAATGTCGAGTC-TAA
1 AAAGGCAATGTCGAG-CATAA
14396837 AAAGG
1 AAAGG
14396842 TAGTGTCGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.31, T:0.16
Consensus pattern (20 bp):
AAAGGCAATGTCGAGCATAA
Found at i:14397871 original size:21 final size:21
Alignment explanation
Indices: 14397847--14398071 Score: 73
Period size: 20 Copynumber: 11.0 Consensus size: 21
14397837 GGAGATTAAT
14397847 AGTTTTCTCTAGGAGTTAAGC
1 AGTTTTCTCTAGGAGTTAAGC
* * *
14397868 AGTTTTCTTTAGGAATT-TGAC
1 AGTTTTCTCTAGGAGTTAAG-C
*
14397889 AGTCTTT-TCAAGGAGTTAAG-
1 AGT-TTTCTCTAGGAGTTAAGC
* * *
14397909 AGTTTTCCCTAGAAGTTTAGC
1 AGTTTTCTCTAGGAGTTAAGC
* * *
14397930 AATCTTTC-ATAGGAGTTAA-T
1 AGT-TTTCTCTAGGAGTTAAGC
*** * * *
14397950 AACATTCCCTAAGAGTTAA-T
1 AGTTTTCTCTAGGAGTTAAGC
* * *
14397970 AGTTTT-TCCTAGTAGTTTAGG
1 AGTTTTCT-CTAGGAGTTAAGC
*
14397991 AGTCTTC-CTTA-GATGTTAA-C
1 AGTTTTCTC-TAGGA-GTTAAGC
*
14398011 AGTTTTCTCTAAGAGTT-A-C
1 AGTTTTCTCTAGGAGTTAAGC
*
14398030 AATTTT-TCCTAGGAGTTAAGC
1 AGTTTTCT-CTAGGAGTTAAGC
* *
14398051 AGTTTTC-CCAGGAGTTTAGC
1 AGTTTTCTCTAGGAGTTAAGC
14398071 A
1 A
14398072 ATCTTCACAA
Statistics
Matches: 148, Mismatches: 38, Indels: 37
0.66 0.17 0.17
Matches are distributed among these distances:
18 1 0.01
19 21 0.14
20 62 0.42
21 56 0.38
22 8 0.05
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (21 bp):
AGTTTTCTCTAGGAGTTAAGC
Found at i:14397936 original size:41 final size:42
Alignment explanation
Indices: 14397856--14397948 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 42
14397846 TAGTTTTCTC
** *
14397856 TAGGAGTTAAGCAGTTTTCTTTAGGAATTTGACAGTCTTTTCA
1 TAGGAGTTAAGCAGTTTTCCCTAGGAATTTGACAATC-TTTCA
14397899 -AGGAGTTAAG-AGTTTTCCCTA-GAAGTTT-AGCAATCTTTCA
1 TAGGAGTTAAGCAGTTTTCCCTAGGAA-TTTGA-CAATCTTTCA
14397939 TAGGAGTTAA
1 TAGGAGTTAA
14397949 TAACATTCCC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
40 9 0.20
41 25 0.57
42 10 0.23
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
TAGGAGTTAAGCAGTTTTCCCTAGGAATTTGACAATCTTTCA
Found at i:14411194 original size:137 final size:138
Alignment explanation
Indices: 14410947--14411249 Score: 437
Period size: 137 Copynumber: 2.2 Consensus size: 138
14410937 CACAAATAAA
* * * *
14410947 TAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTTATACAAAATATTGATTGTAT
1 TAATATTCTTTTGGAAAGAATATAATTAACATATGAATTTGATTCATACAAAATATTAACTGTAT
* * * *
14411012 ATATTTTACCAAATTTATTATTATAAACAATTGTATTAATTAATTTTGGTCAAAATATAAAAGAA
66 ATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGAA
14411077 ATAGAAAT
131 ATAGAAAT
** **
14411085 TAATATTCTTACGGAAAGAATATAATTAACATATTCA-TTGATTCATACAAAATATTAACTGTAT
1 TAATATTCTTTTGGAAAGAATATAATTAACATATGAATTTGATTCATACAAAATATTAACTGTAT
* * *
14411149 ATATTTTATCGAATTTATTAATATAAAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGAC
66 ATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGAA
**
14411214 ATTTAAAT
131 ATAGAAAT
*
14411222 TAATATTCTTTTGGAAAGAATACAATTA
1 TAATATTCTTTTGGAAAGAATATAATTA
14411250 CTTTTTCCAA
Statistics
Matches: 145, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
137 113 0.78
138 32 0.22
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
TAATATTCTTTTGGAAAGAATATAATTAACATATGAATTTGATTCATACAAAATATTAACTGTAT
ATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGAA
ATAGAAAT
Found at i:14411360 original size:75 final size:75
Alignment explanation
Indices: 14411224--14411370 Score: 199
Period size: 75 Copynumber: 2.0 Consensus size: 75
14411214 ATTTAAATTA
* * **
14411224 ATATTCTTTTGGAAAGAATACAATTACTTTTTCCAATTTTCCATTTGTCTTCTTTGTTAATAAGA
1 ATATTCTTTTGGAAAGAATACAATTACTTTTTCCAACTTTCCATTTGCCTTCTCAGTTAATAAGA
14411289 GAATAATCCT
66 GAATAATCCT
* *
14411299 ATATTCTTTTGGAAAGAATATAATT-CTTTTTTCTAACTTTCCATTTGCCTTCTCCAG-TAATAA
1 ATATTCTTTTGGAAAGAATACAATTAC-TTTTTCCAACTTTCCATTTGCCTTCT-CAGTTAATAA
*
14411362 GGGAATAAT
64 GAGAATAAT
14411371 AATGGTTTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
74 1 0.02
75 61 0.97
76 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (75 bp):
ATATTCTTTTGGAAAGAATACAATTACTTTTTCCAACTTTCCATTTGCCTTCTCAGTTAATAAGA
GAATAATCCT
Found at i:14438121 original size:15 final size:16
Alignment explanation
Indices: 14438094--14438123 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14438084 AATTACAATT
14438094 AATATATATTATATAA
1 AATATATATTATATAA
14438110 AATATA-ATTATATA
1 AATATATATTATATA
14438124 TTAGTTGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:14469261 original size:41 final size:41
Alignment explanation
Indices: 14469197--14469292 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
14469187 TCGAGTTTTT
* ** *
14469197 AGCCTAGCAGGCTTTATGCCGGTGAATTATTTCAGGCTTTA
1 AGCCTAGCAGGCTTAATGCCGGTGAACCATATCAGGCTTTA
* *
14469238 TA-CCTAGCAGGCTTAATGTCGGTGTACCATATCAGGCTTTA
1 -AGCCTAGCAGGCTTAATGCCGGTGAACCATATCAGGCTTTA
14469279 AGCCTAGCAGGCTT
1 AGCCTAGCAGGCTT
14469293 GGTGCCGATA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.02
41 45 0.96
42 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (41 bp):
AGCCTAGCAGGCTTAATGCCGGTGAACCATATCAGGCTTTA
Found at i:14472634 original size:17 final size:17
Alignment explanation
Indices: 14472586--14472627 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
14472576 CCTAAAGGGA
14472586 TTATGAAAGAAAAATAT
1 TTATGAAAGAAAAATAT
14472603 TTATGAAAGAAAAATAT
1 TTATGAAAGAAAAATAT
14472620 TTATGAAA
1 TTATGAAA
14472628 TGTAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.31
Consensus pattern (17 bp):
TTATGAAAGAAAAATAT
Found at i:14475182 original size:27 final size:27
Alignment explanation
Indices: 14475127--14475189 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
14475117 CCAAAAAGGT
* *
14475127 TATTCTTTCATAATTTTCCACAAAGGC
1 TATTCTTTCATAATTATCCACAAAAGC
*
14475154 TATTCTTTCATAATTCAT-CATAAAAGC
1 TATTCTTTCATAATT-ATCCACAAAAGC
14475181 TATTCTTTC
1 TATTCTTTC
14475190 CTGTCATGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (27 bp):
TATTCTTTCATAATTATCCACAAAAGC
Found at i:14480110 original size:243 final size:243
Alignment explanation
Indices: 14479681--14480166 Score: 909
Period size: 243 Copynumber: 2.0 Consensus size: 243
14479671 ATTCATCACT
14479681 CTACCTGATGGATCTCGTGCTCCAAATCCGGCGGCTCAAGTCTTTACGCAGCAAGATCAACTGCT
1 CTACCTGATGGATCTCGTGCTCCAAATCCGGCGGCTCAAGTCTTTACGCAGCAAGATCAACTGCT
14479746 AATGTCCTGGCTTCTTTCTACTGTAACTTCCTCTCATCAATCCTCCTTTGATGATGCTTGCACGG
66 AATGTCCTGGCTTCTTTCTACTGTAACTTCCTCTCATCAATCCTCCTTTGATGATGCTTGCACGG
* * * *
14479811 CGTGTGACATATGGAGCATGGCCGGTAATCTTTTTGCCGCTGATACGGGGGCCAAGCAGTCGAGG
131 CGTGCGACATATGGAGCATGGCCGATAATCTTTTTACCGCTGATACGGGCGCCAAGCAGTCGAGG
14479876 ATTCGGCATGAACTTCACGCGTTGAAGAAAGGTAATCTTTCGATTAAG
196 ATTCGGCATGAACTTCACGCGTTGAAGAAAGGTAATCTTTCGATTAAG
* *
14479924 CTACCTGATTGATCTCGTGCTCCAAATTCGGCGGCTCAAGTCTTTACGCAGCAAGATCAACTGCT
1 CTACCTGATGGATCTCGTGCTCCAAATCCGGCGGCTCAAGTCTTTACGCAGCAAGATCAACTGCT
14479989 AATGTCCTGGCTTCTTTCTACTGTAACTTCCTCTCATCAATCCTCCTTTGATGATGCTTGCACGG
66 AATGTCCTGGCTTCTTTCTACTGTAACTTCCTCTCATCAATCCTCCTTTGATGATGCTTGCACGG
14480054 CGTGCGACATATGGAGCATGGCCGATAATCTTTTTACCGCTGATACGGGCGCCAAGCAGTCGAGG
131 CGTGCGACATATGGAGCATGGCCGATAATCTTTTTACCGCTGATACGGGCGCCAAGCAGTCGAGG
*
14480119 ATTCGGCATGAACTTCACTCGTTGAAGAAAGGTAATCTTTCGATTAAG
196 ATTCGGCATGAACTTCACGCGTTGAAGAAAGGTAATCTTTCGATTAAG
14480167 GCGTATGTTG
Statistics
Matches: 236, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
243 236 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (243 bp):
CTACCTGATGGATCTCGTGCTCCAAATCCGGCGGCTCAAGTCTTTACGCAGCAAGATCAACTGCT
AATGTCCTGGCTTCTTTCTACTGTAACTTCCTCTCATCAATCCTCCTTTGATGATGCTTGCACGG
CGTGCGACATATGGAGCATGGCCGATAATCTTTTTACCGCTGATACGGGCGCCAAGCAGTCGAGG
ATTCGGCATGAACTTCACGCGTTGAAGAAAGGTAATCTTTCGATTAAG
Found at i:14488853 original size:21 final size:21
Alignment explanation
Indices: 14488827--14488869 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
14488817 TCCGGGTGGA
14488827 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTATGAGCTTCTGT
*
14488848 TCAGCTTTTATGAGCTTCTGT
1 TCAGCTCTTATGAGCTTCTGT
14488869 T
1 T
14488870 GGAATGTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.47
Consensus pattern (21 bp):
TCAGCTCTTATGAGCTTCTGT
Found at i:14505741 original size:43 final size:43
Alignment explanation
Indices: 14505678--14505764 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
14505668 TTGCCAGATA
*
14505678 TAGAATTCGTGGTTTGTATTCTTTAACTATCGACCTAGATTCT
1 TAGAATTCGTGGTTTCTATTCTTTAACTATCGACCTAGATTCT
*
14505721 TAGAATTCGTGGTTTCTATTCTTTAACTATCGACTTAGATTCT
1 TAGAATTCGTGGTTTCTATTCTTTAACTATCGACCTAGATTCT
14505764 T
1 T
14505765 TCTTACTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46
Consensus pattern (43 bp):
TAGAATTCGTGGTTTCTATTCTTTAACTATCGACCTAGATTCT
Found at i:14507298 original size:14 final size:13
Alignment explanation
Indices: 14507278--14507311 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14507268 AATCAAGCAA
14507278 AAAAAATTAGAATT
1 AAAAAATTA-AATT
*
14507292 TAAAAATTAAATT
1 AAAAAATTAAATT
14507305 AAAAAAT
1 AAAAAAT
14507312 ATTAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AAAAAATTAAATT
Found at i:14507315 original size:15 final size:15
Alignment explanation
Indices: 14507277--14507324 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
14507267 GAATCAAGCA
*
14507277 AAAAAAATTAGAATT
1 AAAAAAATTAAAATT
*
14507292 -TAAAAATT-AAATT
1 AAAAAAATTAAAATT
14507305 AAAAAATATTAAAATT
1 AAAAAA-ATTAAAATT
14507321 AAAA
1 AAAA
14507325 TTAAAATGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 4 0.15
14 11 0.41
15 3 0.11
16 9 0.33
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (15 bp):
AAAAAAATTAAAATT
Found at i:14509063 original size:47 final size:48
Alignment explanation
Indices: 14508953--14509069 Score: 125
Period size: 47 Copynumber: 2.5 Consensus size: 48
14508943 TTAAAAATTG
* *
14508953 ATGAT-AATTTAAAAATAATAATACGTGATAAATTCAAAATAATAATAT
1 ATGATAAATTT-AAAATAATAATACATGATAAACTCAAAATAATAATAT
* * * **
14509001 ATGTTAACTTT-AAATAAAAATACATGATAAAC-CTAAAATAATGTTA-
1 ATGATAAATTTAAAATAATAATACATGATAAACTC-AAAATAATAATAT
14509047 ATGATAAATTTAAAATAATAATA
1 ATGATAAATTTAAAATAATAATA
14509070 TATTATAATA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
46 10 0.18
47 38 0.68
48 4 0.07
49 4 0.07
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (48 bp):
ATGATAAATTTAAAATAATAATACATGATAAACTCAAAATAATAATAT
Found at i:14509083 original size:24 final size:23
Alignment explanation
Indices: 14508923--14509087 Score: 124
Period size: 24 Copynumber: 7.2 Consensus size: 23
14508913 ATAAATTTGG
*
14508923 AATAATAATACATGATAAATTTA
1 AATAATAATACATGATAAATTAA
* *
14508946 AA-AAT--T-GATGATAATTTAAA
1 AATAATAATACATGATAAATT-AA
*
14508966 AATAATAATACGTGATAAATTCAA
1 AATAATAATACATGATAAATT-AA
* * * *
14508990 AATAATAATATATGTTAACTTTA
1 AATAATAATACATGATAAATTAA
* *
14509013 AATAAAAATACATGATAAACCTAA
1 AATAATAATACATGATAAA-TTAA
**
14509037 AATAATGTTA-ATGATAAATTTAA
1 AATAATAATACATGATAAA-TTAA
* *
14509060 AATAATAATATATTATAATATTAA
1 AATAATAATACATGATAA-ATTAA
14509084 AATA
1 AATA
14509088 GTATTGATAA
Statistics
Matches: 108, Mismatches: 26, Indels: 15
0.72 0.17 0.10
Matches are distributed among these distances:
19 9 0.08
20 4 0.04
21 3 0.03
22 3 0.03
23 38 0.35
24 50 0.46
25 1 0.01
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (23 bp):
AATAATAATACATGATAAATTAA
Found at i:14510609 original size:45 final size:45
Alignment explanation
Indices: 14510560--14510663 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 45
14510550 TTAATCTACT
* *
14510560 CCACTATAACTTCAAGGACATAAGA-TTCACCATCTTTAGTCTGCC
1 CCACTGTAACTTCAAGGACATAAGACTT-ACCATCTTCAGTCTGCC
* * ** * * *
14510605 CCACTGCAACTTCAGGGGGATAAGACTTGCTATCTTCAGTCTGCT
1 CCACTGTAACTTCAAGGACATAAGACTTACCATCTTCAGTCTGCC
14510650 CCACTGTAACTTCA
1 CCACTGTAACTTCA
14510664 GGGAGATAGG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
45 46 0.96
46 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (45 bp):
CCACTGTAACTTCAAGGACATAAGACTTACCATCTTCAGTCTGCC
Found at i:14510860 original size:51 final size:50
Alignment explanation
Indices: 14510794--14511319 Score: 518
Period size: 51 Copynumber: 10.8 Consensus size: 50
14510784 CTATTGTAAT
* * *
14510794 GCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* *
14510845 GCCAAGGAAATAAGATTCGCTGTCTTCAGCTCTAATC--T--ACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * *
14510891 GCC-AGAGAAATAAGATTTGCTGCCTTCAGCATTAATCTGTTCCACTGTAAC
1 GCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * * *
14510942 ACCAATGAAACAAGATTCGCTGCCTTTAGCTTTAATC--T--ATTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * *
14510988 GCCAGGGAAACAAG--TCACTGCCTTCAGCTTTAATCTATTCCACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * * *
14511037 GGCAAGGAAATAAGATCCGTTGCCATT-AGCTTTAATC--T--ATTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCC-TTCAGCTTTAATCTTTCCACTGCAAC
* * * * *
14511083 G-CAAGGGAAACAAGATTTGCTACCTTTAGCTTTAATCTGTTCCACTGCAAT
1 GCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
*
14511134 GCCAAGGAAATAAGATTCGCTGTCTTCAGCTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* * *
14511185 GCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTGCACTACAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TTCCACTGCAAC
* *
14511236 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA--TAT--ATTGCAAC
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
* * *
14511282 GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCT
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
14511320 ATTGCAACGC
Statistics
Matches: 394, Mismatches: 56, Indels: 53
0.78 0.11 0.11
Matches are distributed among these distances:
44 19 0.05
45 7 0.02
46 124 0.31
47 1 0.00
48 5 0.01
49 21 0.05
51 211 0.54
52 6 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTCCACTGCAAC
Found at i:14510926 original size:97 final size:97
Alignment explanation
Indices: 14510775--14511319 Score: 682
Period size: 97 Copynumber: 5.6 Consensus size: 97
14510765 TGTGACTTAT
** * *
14510775 AGCTTTAGCCTATTGTAATGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* *
14510840 ACAACGCCAAGGAAATAAGATTCGCTGTCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * * *
14510872 AGCTCTAATCTACTGCAACGCCAGAGAAATAAGATTTGCTGCCTTCAGCATTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * * * *
14510937 GTAACACCAATGAAACAAGATTCGCTGCCTTT
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* *
14510969 AGCTTTAATCTATTGCAACGCCAGGGAAACAAG--TCACTGCCTTCAGCTTTAATCTATTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * *
14511032 GCAACGGCAAGGAAATAAGATCCGTTGCCATT-
66 GCAACGCCAAGGAAATAAGATTCGCTGCC-TTC
* * * *
14511064 AGCTTTAATCTATTGCAACGCAAGGGAAACAAGATTTGCTACCTTTAGCTTTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* *
14511129 GCAATGCCAAGGAAATAAGATTCGCTGTCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * *
14511161 AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTATT
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* *
14511226 GCACTACAACGCCAAGGAAATAAGATTCGCTGCCTTC
61 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* *
14511263 AGCTTTAATATATTGCAACGCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCT
14511320 ATTGCAACGC
Statistics
Matches: 379, Mismatches: 60, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
95 80 0.21
96 4 0.01
97 209 0.55
99 1 0.00
100 1 0.00
102 84 0.22
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (97 bp):
AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
Found at i:14513079 original size:27 final size:27
Alignment explanation
Indices: 14513049--14513113 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
14513039 CCACAATGAA
* *
14513049 CATTTCTTTTAG-GTACGCCACGAAAG
1 CATTTCTTTTAGAGTACCCCACAAAAG
* *
14513075 CCA-TTCCTTCAGAGTACCCCACAAAAG
1 -CATTTCTTTTAGAGTACCCCACAAAAG
14513102 CATTTCTTTTAG
1 CATTTCTTTTAG
14513114 TTTATCGCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (27 bp):
CATTTCTTTTAGAGTACCCCACAAAAG
Found at i:14513182 original size:27 final size:27
Alignment explanation
Indices: 14513145--14513220 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
14513135 CTTTGAGAGA
* *
14513145 TCACCAAAAAGGTTATTCTTTCATAAT
1 TCACCACAAAGGCTATTCTTTCATAAT
**
14513172 TTGCCACAAAGGCTATTCTTTCATAAT
1 TCACCACAAAGGCTATTCTTTCATAAT
*
14513199 TCATCACAAAGGCTATTCTTTC
1 TCACCACAAAGGCTATTCTTTC
14513221 CTGTCATGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (27 bp):
TCACCACAAAGGCTATTCTTTCATAAT
Found at i:14515362 original size:29 final size:29
Alignment explanation
Indices: 14515320--14515375 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
14515310 TGCCCATTGA
14515320 GGTGTGCATTATGCTATTTTAGCTTTTGG
1 GGTGTGCATTATGCTATTTTAGCTTTTGG
14515349 GGTGTGCATTATGCTATTTTAGCTTTT
1 GGTGTGCATTATGCTATTTTAGCTTTT
14515376 TTTATCTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.50
Consensus pattern (29 bp):
GGTGTGCATTATGCTATTTTAGCTTTTGG
Found at i:14520741 original size:26 final size:24
Alignment explanation
Indices: 14520712--14520759 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
14520702 TAAAAAGTGA
*
14520712 TGATAATTTAAAAAATTAATAATACG
1 TGATAAATT-AAAAA-TAATAATACG
*
14520738 TGATAAATTCAAAATAATAATA
1 TGATAAATTAAAAATAATAATA
14520760 TATGTTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 4 0.20
26 8 0.40
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
TGATAAATTAAAAATAATAATACG
Found at i:14522426 original size:44 final size:44
Alignment explanation
Indices: 14522229--14522485 Score: 191
Period size: 44 Copynumber: 5.9 Consensus size: 44
14522219 CGTCTTGTTT
** * * * * *
14522229 CTTCAATCCACTCTACTGCAACTTCAAGGTGATAGGATTATTGG
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTACTAG
* * * * *
14522273 CTTTAATCTGCTCTACTGCAACTTCAAGGACATAAGATTCACCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT-ACTAG
* * * * * * *
14522318 CTTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTACTAG
* * * * *
14522363 CTTCAGTCTGCTCCACTGCAACTTCAAGGAAATAGGATTATTGG
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTACTAG
* *
14522407 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-C--G
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTACTAG
* *
14522448 CCTT-GATCTGCTCTACTGCAACTTC-AGAGAGATAAGAT
1 -CTTCAATCTGCTCCACTGCAACTTCAAG-GAGATAAGAT
14522486 CTGTGACTTA
Statistics
Matches: 170, Mismatches: 39, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.01
41 30 0.18
42 3 0.02
44 70 0.41
45 64 0.38
46 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTACTAG
Found at i:14522469 original size:41 final size:42
Alignment explanation
Indices: 14522278--14522485 Score: 170
Period size: 45 Copynumber: 4.8 Consensus size: 42
14522268 ATTGGCTTTA
* * * *
14522278 ATCTGCTCTACTGCAACTTCAAGGACATAAGATTCACCATCTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-GC-TCTTC
* * *
14522322 AGTCTACCCCACTGCAACTTCAGGGGGATAAGACTT-GCTATCTTC
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGC--TCTTC
* * * * *
14522367 AGTCTGCTCCACTGCAACTTCAAGGAAATAGGATTATTGGCT-TTA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATA--A-GATTCGCTCTTC
*
14522412 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC-CTTG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTCTTC
* *
14522453 ATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
14522486 CTGTGACTTA
Statistics
Matches: 135, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
41 38 0.28
42 1 0.01
44 28 0.21
45 59 0.44
46 3 0.02
47 3 0.02
48 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTCTTC
Found at i:14522547 original size:46 final size:46
Alignment explanation
Indices: 14522497--14523376 Score: 724
Period size: 46 Copynumber: 18.3 Consensus size: 46
14522487 TGTGACTTAT
* *
14522497 AGCTTTAATCTATTGCAATGCCAGGGAAACAAGATTTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * * * *
14522543 AGCTTTAATCTGTTCCACTACAACGCCAAGGAAATAAGATTAGCTGTCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * * *
14522594 AGCTCTAATTTACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * * * * * *
14522640 AGCATTAATCTGTTCCACTACAACACCAAGGAAATAAGATTTGCTGTCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* *
14522691 AGCTTTAATCTATTGCAACGCGAGGGAAACAAGATTCACTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
*
14522737 AGCTTCAATCTATTGCAACGCCAGGGAAACAAG--TCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * * * *
14522781 AGCTTTAATCTGTTCCACTGCAACGGCAAGGAAATAAGATTCGTTGCCATC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* *
14522832 AGCTTTAATCTATTGCAACGCAAGGGAAACAAGATTTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * *
14522878 AGCTTTAATCTGTT-CCACTGCAACACCGAGGACATAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAAC-GC--CA--G-GGAAACAAGATTCGCTGCCTTC
*
14522929 AGCTTTAATCTATTGCAACGCTAGGGAAACAAGA-TCTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTC-GCTGCCTTC
* * * * *
14522975 AGCTTTAATCTGTTCCACTACAATGCCAAGGAAATAAGATTCGCTACCTTC
1 AGCTTTAATCTATTGCA--AC---GCCAGGGAAACAAGATTCGCTGCCTTC
* * * *
14523026 AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * *
14523077 AGCTTTAATCTATTGCAATGCTAGGGAAACAAGATTCGCTGACTTT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * *
14523123 AGCTTTAATCTATTGGAATGCCAGAGAAACAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * * *
14523169 AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* *
14523220 AACTTTAATCTATTGCAATGCCAGGGAAACAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * ** * *
14523266 AGCTTTAATCTGTTCCACTACAACGCCAAAGAAATAATATTCGCTGCCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* * *
14523317 AGGTTTAATCTATTACAACGCCAGGGAGACAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* *
14523363 ATCTTTAATGTATT
1 AGCTTTAATCTATT
14523377 CCACTGCAAC
Statistics
Matches: 674, Mismatches: 114, Indels: 92
0.77 0.13 0.10
Matches are distributed among these distances:
44 19 0.03
45 5 0.01
46 336 0.50
47 2 0.00
48 9 0.01
49 23 0.03
50 1 0.00
51 268 0.40
52 5 0.01
54 3 0.00
56 3 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (46 bp):
AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
Found at i:14522628 original size:97 final size:96
Alignment explanation
Indices: 14522510--14523403 Score: 752
Period size: 97 Copynumber: 9.2 Consensus size: 96
14522500 TTTAATCTAT
* * * *
14522510 TGCAATGCCAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTACAACGCCAAGGA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT--ACTGCAACGCCAAGGA
* * * *
14522575 AATAAGATTAGCTGTCTTCAGCTCTAA-T-TT-AC
62 AACAAGATTCGCTGCCTTCAGCTTTAACTGTTCAC
* * * *
14522607 TGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGCATTAATCTGTTCCACTACAACACCAAGGA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT--ACTGCAACGCCAAGGA
* * * * *
14522672 AATAAGATTTGCTGTCTTCAGCTTTAA-T-CT-AT
62 AACAAGATTCGCTGCCTTCAGCTTTAACTGTTCAC
* * * * * *
14522704 TGCAACGCGAGGGAAACAAGATTCACTGCCTTCAGCTTCAATC-TATTGCAACGCCAGGGAAACA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAGGAAACA
14522768 AG--TCGCTGCCTTCAGCTTTAATCTGTTCCAC
66 AGATTCGCTGCCTTCAGCTTTAA-CTGTT-CAC
* * * * *
14522799 TGCAACGGCAAGGAAATAAGATTCGTTGCCATCAGCTTTAATC-TATTGCAACG-CAAGGGAAAC
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAA-GGAAAC
*
14522862 AAGATTTGCTGCCTTCAGCTTTAATCTGTTCCAC
65 AAGATTCGCTGCCTTCAGCTTTAA-CTGTT-CAC
* * * * *
14522896 TGCAACACC-GAGGACATAAGATTCGCTGCCTTCAGCTTTAATC-TATTGCAACGCTAGGGAAAC
1 TGCAACGCCAG-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAGGAAAC
14522959 AAGA-TCTGCTGCCTTCAGCTTTAATCTGTTCCAC
65 AAGATTC-GCTGCCTTCAGCTTTAA-CTGTT-CAC
* * * *
14522993 TACAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT--ACTGCAACGCCAAGGA
* * * *
14523058 AATAAGATTCTCTGCCTTCAGCTTTAA-T-CT-AT
62 AACAAGATTCGCTGCCTTCAGCTTTAACTGTTCAC
* * * * * * * *
14523090 TGCAATGCTAGGGAAACAAGATTCGCTGACTTTAGCTTTAATC-TATTGGAATGCC-AGAGAAAC
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAG-GAAAC
14523153 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
65 AAGATTCGCTGCCTTCAGCTTTAA-CTGTT-CAC
* * * * * *
14523187 TGCAACGCCAAGGAAATAAGATTCACTGCCTTCAACTTTAATC-TATTGCAATGCCAGGGAAACA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAGGAAACA
14523251 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
66 AGATTCGCTGCCTTCAGCTTTAA-CTGTT-CAC
* ** * * * * * *
14523284 TACAACGCCAAAGAAATAATATTCGCTGCCTTCAGGTTTAATC-TATTACAACGCCAGGGAGACA
1 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAGGAAACA
*
14523348 AGATTCGCTGCCTTCATCTTTAA-TGTATTCCAC
66 AGATTCGCTGCCTTCAGCTTTAACTG--TT-CAC
* * *
14523381 TGCAACACCCGGGAAAAAAGATT
1 TGCAACGCCAGGGAAATAAGATT
14523404 TGCCATAATG
Statistics
Matches: 674, Mismatches: 96, Indels: 54
0.82 0.12 0.07
Matches are distributed among these distances:
90 17 0.03
91 2 0.00
92 53 0.08
93 1 0.00
94 5 0.01
95 58 0.09
96 1 0.00
97 495 0.73
98 2 0.00
99 1 0.00
100 2 0.00
102 35 0.05
103 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (96 bp):
TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTACTGCAACGCCAAGGAAACA
AGATTCGCTGCCTTCAGCTTTAACTGTTCAC
Found at i:14523031 original size:194 final size:194
Alignment explanation
Indices: 14522521--14523386 Score: 883
Period size: 194 Copynumber: 4.5 Consensus size: 194
14522511 GCAATGCCAG
* * * * * * *
14522521 GGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTACAACGCCAAGGAAATAAGATTAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCG
* * * * *
14522586 CTGTCTTCAGCTCTAA--T-TT--ACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGCATT
61 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT
* * * * * * *
14522646 AATCTGTTCCACTACAACACCAAGGAAATAAGATTTGCTGTCTTCAGCTTTAATC---T--ATTG
126 AATCTATTGCA--AC-GCA--AGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTG
*
14522706 CAAC-GCGA
186 CAACACCGA
* * *
14522714 GGGAAACAAGATTCACTGCCTTCAGCTTCAATCTATTGCAACGCCAGGGAAACAAG--TCGCTGC
1 -GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGC
* * *
14522777 CTTCAGCTTTAATCTGTTCCACTGCAACGGCAAGGAAATAAGATTCGTTGCCATCAGCTTTAATC
65 CTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC
14522842 TATTGCAACGCAAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCGA
130 TATTGCAACGCAAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCGA
* *
14522907 GGACATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCTAGGGAAACAAGA-TCTGCTGC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTC-GCTGC
* * *
14522971 CTTCAGCTTTAATCTGTTCCACTACAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATC
65 CTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC
* * * * *
14523036 TGTTCCACTGCAACGCCAA-GGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTATTGCAATGC-
130 ---T--ATTGCAACG-CAAGGGAAACAAGATT-TGCTGCCTTCAGCTTTAATCTGTTCCACTGCA
*
14523098 -TA--G-
188 ACACCGA
* * * * * *
14523101 GGAAACAAGATTCGCTGACTTTAGCTTTAATCTATTGGAATGCCAGAGAAACAAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCC
* *
14523166 TTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAACTTTAATCT
66 TTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
* * * * * *
14523231 ATTGCAATGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAACGCCAA
131 ATTGCAACGCAAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCGA
* * * * *
14523295 AGAAATAATATTCGCTGCCTTCAGGTTTAATCTATTACAACGCCAGGGAGACAAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCC
* * *
14523360 TTCATCTTTAATGTATTCCACTGCAAC
66 TTCAGCTTTAATCTGTTCCACTGCAAC
14523387 ACCCGGGAAA
Statistics
Matches: 564, Mismatches: 80, Indels: 56
0.81 0.11 0.08
Matches are distributed among these distances:
187 47 0.08
188 2 0.00
189 64 0.11
190 5 0.01
191 2 0.00
192 101 0.18
193 5 0.01
194 284 0.50
195 3 0.01
197 2 0.00
199 45 0.08
200 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (194 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCC
TTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
ATTGCAACGCAAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCGA
Found at i:14524656 original size:14 final size:15
Alignment explanation
Indices: 14524632--14524667 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
14524622 GCCTCTCTAT
14524632 TTTTTACTTTTTTCA
1 TTTTTACTTTTTTCA
14524647 TTTTTA-TTTTTTCA
1 TTTTTACTTTTTTCA
14524661 TTTTTAC
1 TTTTTAC
14524668 GACTCAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTACTTTTTTCA
Found at i:14530933 original size:13 final size:14
Alignment explanation
Indices: 14530902--14530936 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
14530892 ATGAAACGAA
14530902 TTAAAATAAATCAAT
1 TTAAAA-AAATCAAT
14530917 TTAAAAAAATC-AT
1 TTAAAAAAATCAAT
14530930 TTAAAAA
1 TTAAAAA
14530937 TACATGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
14 5 0.25
15 6 0.30
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (14 bp):
TTAAAAAAATCAAT
Found at i:14531266 original size:18 final size:19
Alignment explanation
Indices: 14531232--14531275 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
14531222 TTGGAATAAT
14531232 AATACATGATAAATTTAAAA
1 AATA-ATGATAAATTTAAAA
*
14531252 ATTAATGAT-AATTTAAAA
1 AATAATGATAAATTTAAAA
14531270 AATAAT
1 AATAAT
14531276 AATACGTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 14 0.64
19 5 0.23
20 3 0.14
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (19 bp):
AATAATGATAAATTTAAAA
Found at i:14536277 original size:24 final size:24
Alignment explanation
Indices: 14536249--14536298 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
14536239 AGGTCCTCAG
14536249 TCATTCATTCTATCGGTTCCAAAA
1 TCATTCATTCTATCGGTTCCAAAA
* *
14536273 TCATTCGTTCTATCGGTTCCCAAA
1 TCATTCATTCTATCGGTTCCAAAA
14536297 TC
1 TC
14536299 CTAACAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.10, T:0.38
Consensus pattern (24 bp):
TCATTCATTCTATCGGTTCCAAAA
Found at i:14539041 original size:126 final size:129
Alignment explanation
Indices: 14538812--14539043 Score: 319
Period size: 126 Copynumber: 1.8 Consensus size: 129
14538802 TGCATTTTTT
* *** *
14538812 TTGCAATGAAGAGTGTTATTGTGAGCTATCTCATACTTCGAAAGATTTTTTTGTAAAATATTTTC
1 TTGCAATGAAGAGCGTTATTGTGAGCTATCTCATACTTCGAAAGAACATTTTGGAAAATATTTTC
*
14538877 GTATGCGAACCTTGGTTTTACAGCTTGAAGCTTCGCTCTCGTGAACTATGATGTGGCTCTTCGCA
66 -TATGCGAACCTTGGTTTTACAGCTAGAAGCTTCGCTCTCGTGAACTATGATGTGGCTCTTCGCA
* * *
14538942 TTGCAATGAAGAGCGTTGTTGTGAGCTATTTTATACTT-GAAA-AACATTTTGGAAACAT-TTTT
1 TTGCAATGAAGAGCGTTATTGTGAGCTATCTCATACTTCGAAAGAACATTTTGGAAA-ATATTTT
* *
14539004 -TATGCGAACCTTGGTTTTACAGCTAGGAGCTTTGCTCTCG
65 CTATGCGAACCTTGGTTTTACAGCTAGAAGCTTCGCTCTCG
14539044 CTAGCTGTGC
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
126 37 0.41
128 13 0.14
129 6 0.07
130 34 0.38
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (129 bp):
TTGCAATGAAGAGCGTTATTGTGAGCTATCTCATACTTCGAAAGAACATTTTGGAAAATATTTTC
TATGCGAACCTTGGTTTTACAGCTAGAAGCTTCGCTCTCGTGAACTATGATGTGGCTCTTCGCA
Found at i:14539129 original size:69 final size:69
Alignment explanation
Indices: 14539009--14539508 Score: 396
Period size: 69 Copynumber: 7.2 Consensus size: 69
14538999 TTTTTTATGC
** * * * * *
14539009 GAACCTTGGTTTTACAGCTAGGAGCTTTGCTCTCGCTAGCTGTGCTAGAGGTTGTGGCTTTTTGC
1 GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCGC
*
14539074 CTGG
66 CTGT
** * * ** * *
14539078 GGTCCTTAATTTTACAGTTGGGAGCTTTGCCCTCGCTAACTGTGTTAGAGGTCATGGCACTTCAC
1 GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCGC
*
14539143 CTGC
66 CTGT
* * * * * *
14539147 GAACCTTAGTTTTACAGATGGGAGCTTTGCTCTCACTAACTATG-TTGCAGGTCGTGGCTCTTCG
1 GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAG-AGGTTGTGGCTCTTCG
*
14539211 CCTAT
65 CCTGT
* * * * **** *
14539216 -AGACCTTAATTTTACAATTGAGAGCTTTGCTCTTGCTAACTGTGCTGGAGGTTACACCTCTTTG
1 GA-ACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCG
14539280 CCTGT
65 CCTGT
* * * * *
14539285 GAACCTTAATTTTACAGTTGGGAACTTTGCTCTCGCTACCTATGCTGGAGGTTGTGCCTCTTCGC
1 GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCGC
14539350 CTG-
66 CTGT
* * * * * * * ** * * *
14539353 CAACCCTTAATTTTATAGCTAGGAGATTTGTTCTCGTTAGTTGTGCTGGAGGTCGTGGCTCTTCA
1 GAA-CCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCG
*
14539418 CCTGC
65 CCTGT
* ** * * ***
14539423 AAACCTTAATTTTACAACTGGGAGCTTTGCTCTTGCTAACTGTGCT-GAAGGTCGCAACTCTTCG
1 GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAG-AGGTTGTGGCTCTTCG
14539487 CCTGT
65 CCTGT
*
14539492 AAACCTTAATTTTACAG
1 GAACCTTAATTTTACAG
14539509 GTAACATTTT
Statistics
Matches: 340, Mismatches: 84, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
68 6 0.02
69 329 0.97
70 5 0.01
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (69 bp):
GAACCTTAATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTGTGCTAGAGGTTGTGGCTCTTCGC
CTGT
Found at i:14539254 original size:138 final size:137
Alignment explanation
Indices: 14539006--14539508 Score: 463
Period size: 138 Copynumber: 3.6 Consensus size: 137
14538996 ACATTTTTTA
** * * * * * *
14539006 TGCGAACCTTGGTTTTACAGCTAGGAGCTTTGCTCTCGCTAGCTGTGCTAGAGGTTGTGGCTTTT
1 TGCGAACCTTAATTTTACAGATGGGAGCTTTGCTCTCGCTAACTATGCT-GAGGTCGTGGCTCTT
* ** * * * * *
14539071 TGCCTGGGGTCCTTAATTTTACAGTTGGGAGCTTTGCCCTCGCTAACTGTGTTAGAGGTCATGGC
65 CGCCTGTAGACCTTAATTTTACAGTTGAGAGCTTTGCTCTCGCTAACTGTGCTGGAGGTCATGGC
*
14539136 ACTTCACC
130 TCTTCACC
* * *
14539144 TGCGAACCTTAGTTTTACAGATGGGAGCTTTGCTCTCACTAACTATGTTGCAGGTCGTGGCTCTT
1 TGCGAACCTTAATTTTACAGATGGGAGCTTTGCTCTCGCTAACTATGCTG-AGGTCGTGGCTCTT
* * * * ***
14539209 CGCCTATAGACCTTAATTTTACAATTGAGAGCTTTGCTCTTGCTAACTGTGCTGGAGGTTACACC
65 CGCCTGTAGACCTTAATTTTACAGTTGAGAGCTTTGCTCTCGCTAACTGTGCTGGAGGTCATGGC
**
14539274 TCTTTGCC
130 TCTTCACC
* * * * * *
14539282 TGTGAACCTTAATTTTACAGTTGGGAACTTTGCTCTCGCTACCTATGCTGGAGGTTGTGCCTCTT
1 TGCGAACCTTAATTTTACAGATGGGAGCTTTGCTCTCGCTAACTATGCT-GAGGTCGTGGCTCTT
* * * * * * ** *
14539347 CGCCTGCA-ACCCTTAATTTTATAGCT-AGGAGATTTGTTCTCGTTAGTTGTGCTGGAGGTCGTG
65 CGCCTGTAGA-CCTTAATTTTACAGTTGA-GAGCTTTGCTCTCGCTAACTGTGCTGGAGGTCATG
14539410 GCTCTTCACC
128 GCTCTTCACC
* * * ***
14539420 TGCAAACCTTAATTTTACA-ACTGGGAGCTTTGCTCTTGCTAACTGTGCTGAAGGTCGCAACTCT
1 TGCGAACCTTAATTTTACAGA-TGGGAGCTTTGCTCTCGCTAACTATGCTG-AGGTCGTGGCTCT
*
14539484 TCGCCTGTAAACCTTAATTTTACAG
64 TCGCCTGTAGACCTTAATTTTACAG
14539509 GTAACATTTT
Statistics
Matches: 291, Mismatches: 67, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
137 4 0.01
138 285 0.98
139 2 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (137 bp):
TGCGAACCTTAATTTTACAGATGGGAGCTTTGCTCTCGCTAACTATGCTGAGGTCGTGGCTCTTC
GCCTGTAGACCTTAATTTTACAGTTGAGAGCTTTGCTCTCGCTAACTGTGCTGGAGGTCATGGCT
CTTCACC
Found at i:14559708 original size:25 final size:24
Alignment explanation
Indices: 14559680--14559726 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14559670 TAAAAATTGA
*
14559680 TGATAATTTAAAAAATAATAATACG
1 TGATAAATT-AAAAATAATAATACG
*
14559705 TGATAAATTCAAAATAATAATA
1 TGATAAATTAAAAATAATAATA
14559727 TATGTTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (24 bp):
TGATAAATTAAAAATAATAATACG
Found at i:14561354 original size:45 final size:44
Alignment explanation
Indices: 14561208--14561450 Score: 186
Period size: 45 Copynumber: 5.5 Consensus size: 44
14561198 AATCCACTCT
* * * ** * * * *
14561208 ACTGCAACTTCAAGGAGATAGGATTATTGGCTTTAATCTGCACT
1 ACTGCAACTTCAGGGAGATAAGATTACTATCTTCAGTCTGCTCC
* * * * *
14561252 ACTGCAACTTCAAGGACATAAGGTTCACCATCTTCAGTCTGCCCC
1 ACTGCAACTTCAGGGAGATAAGATT-ACTATCTTCAGTCTGCTCC
* *
14561297 ACTGCAACTTCAGGGGGATAAGACTTGCTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGA-TTACTATCTTCAGTCTGCTCC
* * * ** * *
14561342 ACTGCAACTTCAGGGAAATAGGATTATTGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTACTATCTTCAGTCTGCTCC
** * * *
14561386 ACTGCAACTTCAGGGAGATAAGATT-C-GCCTTGA-ACTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTACTATCTTCAGTCTGCTCC
*
14561427 ACTGCAACTTCAGAGAGATAAGAT
1 ACTGCAACTTCAGGGAGATAAGAT
14561451 CTGTGACTTA
Statistics
Matches: 162, Mismatches: 35, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
41 29 0.18
42 5 0.03
44 60 0.37
45 66 0.41
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTACTATCTTCAGTCTGCTCC
Found at i:14561394 original size:44 final size:44
Alignment explanation
Indices: 14561194--14561446 Score: 181
Period size: 44 Copynumber: 5.8 Consensus size: 44
14561184 CGTCTTGTTT
** * *
14561194 CTTCAATCCACTCTACTGCAACTTCAAGGAGATAGGATTATTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGG
* * * * * ****
14561238 CTTTAATCTGCACTACTGCAACTTCAAGGACATAAGG-TTCACCAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-AGGATT-ATTGG
* * * * ** **
14561283 CTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTATTGG
* *
14561328 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAGGATTATTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGG
* * * *
14561372 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TCGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGG
* * *
14561414 CTTGAA-CTGCTCTACTGCAACTTCAGAGAGATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
14561447 AGATCTGTGA
Statistics
Matches: 169, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
41 25 0.15
42 7 0.04
43 1 0.01
44 68 0.40
45 66 0.39
46 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGG
Found at i:14561511 original size:46 final size:46
Alignment explanation
Indices: 14561462--14562387 Score: 823
Period size: 46 Copynumber: 19.3 Consensus size: 46
14561452 TGTGACTTAT
* * *
14561462 AGCTTTAATCTATTGCAATGCCAGGGAAACAAGATTCGCTGCCTTT
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
14561508 AGCTTTAATCTGTTCCACTACAACGCCAAGGAAATAAGATTCGCTGTCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
14561559 AGCTCTAATTTACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * * *
14561605 AGCATTAATCTGTTCCACTGCAACACCAAGGAAATAAGATTTGTTGTCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
14561656 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCACTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
14561702 AGCTTCAATCTATTGCAACGCCAGGGAAACAAGATTCACTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
14561748 AGCTTCAATCTATTGCAACGCCAGGGAAACAAG--TCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * *
14561792 AGCTTTAATCTGTTCCACTGCAACGGCAAGGAAATAAGATTCGTTTCCATC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
14561843 AGCTTTAATCTATTGCAAAGCAAGGGAAACAAGATTTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
14561889 AGCTTTAATTTGTTCCACTGCAACGCCAAGGACATAAGATTCGCTGCCTTC
1 AGCTTTAA-----TCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
14561940 AGCTTTAATCTATTGCAACGCTAGGGAAACAAGA-TCTGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTC-GCTGCCTTC
* * *
14561986 AGCTTTAATCTATTCCACTGCAATGCCAAGGAAATAAGATTCGCTACCTTC
1 AGCTTTAATCTA-T----TGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * ** *
14562037 AGCTTTAATCTGTTCCACTGTAATGCCAAAGAAATAAGATTCTCTGCCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
14562088 AGCTTTAATCTATTGCAACGCTAGGGAAACAAGATTCGCTGACTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
14562134 AGCTTTAATCTATTGGAACGCCAGAGAAACAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
14562180 AGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTC
1 AGCTTTAA-----TCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
14562231 AACTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * ** *
14562277 AGATTTAATCTGTTCCACTACAACGCCAAAGAAATAATATTCGCTGCCTTC
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
14562328 AGGTTTAATCTATTGCAACGCCAGGGAGATAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
*
14562374 AGCTTTAATGTATT
1 AGCTTTAATCTATT
14562388 CCACTGCAAC
Statistics
Matches: 720, Mismatches: 116, Indels: 88
0.78 0.13 0.10
Matches are distributed among these distances:
44 19 0.03
45 2 0.00
46 385 0.53
47 2 0.00
48 5 0.01
49 21 0.03
51 282 0.39
52 2 0.00
54 1 0.00
56 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (46 bp):
AGCTTTAATCTATTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
Found at i:14561613 original size:97 final size:97
Alignment explanation
Indices: 14561462--14562397 Score: 1187
Period size: 97 Copynumber: 9.7 Consensus size: 97
14561452 TGTGACTTAT
* *
14561462 AGCTTTAATCTATTGCAATGCCAGGGAAACAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* *
14561527 ACAACGCCAAGGAAATAAGATTCGCTGTCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * * *
14561559 AGCTCTAATTTACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGCATTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * * *
14561624 GCAACACCAAGGAAATAAGATTTGTTGTCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * *
14561656 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCACTGCCTTCAGCTTCAATC---T--ATT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * *
14561716 GCAACGCCAGGGAAACAAGATTCACTGCCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
*
14561748 AGCTTCAATCTATTGCAACGCCAGGGAAACAAG--TCGCTGCCTTCAGCTTTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * * *
14561811 GCAACGGCAAGGAAATAAGATTCGTTTCCATC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * *
14561843 AGCTTTAATCTATTGCAAAGCAAGGGAAACAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
*
14561908 GCAACGCCAAGGACATAAGATTCGCTGCCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* *
14561940 AGCTTTAATCTATTGCAACGCTAGGGAAACAAGA-TCTGCTGCCTTCAGCTTTAATCTATTCCAC
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTC-GCTGCCTTCAGCTTTAATCTGTTCCAC
* *
14562004 TGCAATGCCAAGGAAATAAGATTCGCTACCTTC
65 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * ** * *
14562037 AGCTTTAATCTGTTCCACTGTAATGCCAAAGAAATAAGATTCTCTGCCTTCAGCTTTAATC---T
1 AGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
14562099 --ATTGCAACGCTAGGGAAACAAGATTCGCTGACTTC
61 CCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * *
14562134 AGCTTTAATCTATTGGAACGCCAGAGAAACAAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
*
14562199 GCAACGCCAAGGAAATAAGATTCACTGCCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* *
14562231 AACTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGATTTAATCTGTTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
* * *
14562296 ACAACGCCAAAGAAATAATATTCGCTGCCTTC
66 GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * *
14562328 AGGTTTAATCTATTGCAACGCCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATGTATTCCACT
1 AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
14562393 GCAAC
66 GCAAC
14562398 ACCCGGGAAA
Statistics
Matches: 718, Mismatches: 102, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
90 19 0.03
92 97 0.14
93 1 0.00
94 2 0.00
95 58 0.08
96 1 0.00
97 502 0.70
99 1 0.00
100 1 0.00
102 34 0.05
103 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (97 bp):
AGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
GCAACGCCAAGGAAATAAGATTCGCTGCCTTC
Found at i:14562284 original size:143 final size:143
Alignment explanation
Indices: 14561475--14562387 Score: 952
Period size: 143 Copynumber: 6.3 Consensus size: 143
14561465 TTTAATCTAT
* * * * * * *
14561475 TGCAATGCCAGGGAAACAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTACAACGCCAAGGA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ATTGCAACGCCAGGGA
* * * * * * *
14561540 AATAAGATTCGCTGTCTTCAGCTCTAATTTACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTC
61 AACAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
*
14561605 AGCATTAATCTGTTCCAC
126 AGCTTTAATCTGTTCCAC
* * * *
14561623 TGCAACACCAAGGAAATAAGATTTGTTGTCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
* * *
14561688 GATTCACTGCCTTCAGCTTCAATCTATTGCAACGCCAGGGAAACAAGATTCACTGCCTTCAGCTT
66 GATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTT
* *
14561753 CAATC---T--AT
131 TAATCTGTTCCAC
* * * * *
14561761 TGCAACGCCAGGGAAACAAG--TCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGGCAAGGA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ATTGCAACGCCAGGGA
* * * * * * *
14561824 AATAAGATTCGTTTCCATCAGCTTTAATCTATTGCAAAGCAAGGGAAACAAGATTTGCTGCCTTC
61 AACAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
*
14561889 AGCTTTAATTTGTTCCAC
126 AGCTTTAATCTGTTCCAC
* *
14561907 TGCAACGCCAAGGACATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCTAGGGAAACAA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
* * * *
14561972 GA-TCTGCTGCCTTCAGCTTTAATCTATTCCACTGCAATGCCAAGGAAATAAGATTCGCTACCTT
66 GATTC-GCTGCCTTCAGCTTTAATCTA-T----TGCAACGCCAGGGAAACAAGATTCGCTGCCTT
14562036 CAGCTTTAATCTGTTCCAC
125 CAGCTTTAATCTGTTCCAC
* * * * *
14562055 TGTAATGCCAAAGAAATAAGATTCTCTGCCTTCAGCTTTAATCTATTGCAACGCTAGGGAAACAA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
* * *
14562120 GATTCGCTGACTTCAGCTTTAATCTATTGGAACGCCAGAGAAACAAGATTCGCTGCCTTCAGCTT
66 GATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTT
*
14562185 TAATTTGTTCCAC
131 TAATCTGTTCCAC
* *
14562198 TGCAACGCCAAGGAAATAAGATTCACTGCCTTCAACTTTAATCTATTGCAACGCCAGGGAAACAA
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
* * * ** * *
14562263 GATTCGCTGCCTTCAGATTTAATCTGTTCCACTACAACGCCAAAGAAATAATATTCGCTGCCTTC
66 GATTCGCTGCCTTCAGCTTTAATC---T--ATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTC
* *
14562328 AGGTTTAATC---T--AT
126 AGCTTTAATCTGTTCCAC
* * *
14562341 TGCAACGCCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATGTATT
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATT
14562388 CCACTGCAAC
Statistics
Matches: 642, Mismatches: 99, Indels: 53
0.81 0.12 0.07
Matches are distributed among these distances:
136 18 0.03
138 18 0.03
139 1 0.00
140 1 0.00
141 76 0.12
142 2 0.00
143 280 0.44
144 2 0.00
145 3 0.00
146 19 0.03
147 1 0.00
148 219 0.34
149 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (143 bp):
TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAA
GATTCGCTGCCTTCAGCTTTAATCTATTGCAACGCCAGGGAAACAAGATTCGCTGCCTTCAGCTT
TAATCTGTTCCAC
Found at i:14563667 original size:14 final size:15
Alignment explanation
Indices: 14563643--14563678 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
14563633 GCCTCTCTAT
14563643 TTTTTACTTTTTTCA
1 TTTTTACTTTTTTCA
*
14563658 TTTTTA-TTTTTTTA
1 TTTTTACTTTTTTCA
14563672 TTTTTAC
1 TTTTTAC
14563679 GACTCAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTACTTTTTTCA
Found at i:14563719 original size:49 final size:50
Alignment explanation
Indices: 14563665--14563764 Score: 146
Period size: 50 Copynumber: 2.0 Consensus size: 50
14563655 TCATTTTTAT
* *
14563665 TTTTTTATTTTTACGACTCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
1 TTTTTTGTTTTAACGACTCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
* * * *
14563715 TTTTTTGTTTTAAGGACTCTAGGCACCCTTTGCGGGTTTTCACCTTGGTC
1 TTTTTTGTTTTAACGACTCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
14563765 CCTTCTCCTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (50 bp):
TTTTTTGTTTTAACGACTCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
Found at i:14564792 original size:10 final size:9
Alignment explanation
Indices: 14564775--14564801 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
14564765 TTTTTAAATA
14564775 TATTTTTTT
1 TATTTTTTT
14564784 TATTTTTTT
1 TATTTTTTT
14564793 TATTTTTTT
1 TATTTTTTT
14564802 GAAACTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
TATTTTTTT
Found at i:14569991 original size:13 final size:14
Alignment explanation
Indices: 14569960--14569994 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
14569950 ATGAAACGAA
14569960 TTAAAATAAATCAAT
1 TTAAAA-AAATCAAT
14569975 TTAAAAAAATC-AT
1 TTAAAAAAATCAAT
14569988 TTAAAAA
1 TTAAAAA
14569995 TACATGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
14 5 0.25
15 6 0.30
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (14 bp):
TTAAAAAAATCAAT
Found at i:14576952 original size:18 final size:19
Alignment explanation
Indices: 14576922--14576975 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 19
14576912 TTTACTTAGC
14576922 ATTTTA-TTAATTTAATTT
1 ATTTTACTTAATTTAATTT
*
14576940 ATTTTACTT-ATTTTA-TT
1 ATTTTACTTAATTTAATTT
* * *
14576957 ATTATGCTTCATTTAATTT
1 ATTTTACTTAATTTAATTT
14576976 TTATTTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 9 0.31
18 16 0.55
19 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTTTACTTAATTTAATTT
Found at i:14576991 original size:21 final size:24
Alignment explanation
Indices: 14576950--14576992 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14576940 ATTTTACTTA
14576950 TTTTATTATTATGCTTCATTTAAT
1 TTTTATTATTATGCTTCATTTAAT
14576974 TTTTATT-TTAT-CTT-ATTTA
1 TTTTATTATTATGCTTCATTTA
14576993 TGATATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 4 0.21
24 7 0.37
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTATTATTATGCTTCATTTAAT
Found at i:14604393 original size:754 final size:754
Alignment explanation
Indices: 14602946--14604447 Score: 3004
Period size: 754 Copynumber: 2.0 Consensus size: 754
14602936 GGTCAGCCAC
14602946 CTTGAGGAGCACTTTGCGAAGGAACAAACATGATAATTGAAGGAAGCTATTATGATTGATTCCCA
1 CTTGAGGAGCACTTTGCGAAGGAACAAACATGATAATTGAAGGAAGCTATTATGATTGATTCCCA
14603011 GAGAACTGTCGAATCAATTAGAGCTTATTATTCTTTATATTTATTTTATTTTGATATTAATCATG
66 GAGAACTGTCGAATCAATTAGAGCTTATTATTCTTTATATTTATTTTATTTTGATATTAATCATG
14603076 TTCACAATTTGTTTTGTTGTTTTTCTATCAACAATGGTAGCTTAATTCTGTTTTGCTAGAATGAT
131 TTCACAATTTGTTTTGTTGTTTTTCTATCAACAATGGTAGCTTAATTCTGTTTTGCTAGAATGAT
14603141 TACATTAATTTGATGAAGTACATTTGATTTATGTTCATAATGTTTTATACCTCAATCAATCATAC
196 TACATTAATTTGATGAAGTACATTTGATTTATGTTCATAATGTTTTATACCTCAATCAATCATAC
14603206 TTTCAATTAAAATCATGCATGTATTTCATCCATTAAAATGTGATTGAATGCATTAGAATTAGTTG
261 TTTCAATTAAAATCATGCATGTATTTCATCCATTAAAATGTGATTGAATGCATTAGAATTAGTTG
14603271 ACCGATCCTATCTAAACAATGATTAATGGACGGAATAATTGAAAGCTGCATGCTTAATTTAGATC
326 ACCGATCCTATCTAAACAATGATTAATGGACGGAATAATTGAAAGCTGCATGCTTAATTTAGATC
14603336 CTAGCCCGATTAAATTAAAGGTTCGTAATAACTCGGGAGAGCTCTATTACCTTGCATAACTTTTA
391 CTAGCCCGATTAAATTAAAGGTTCGTAATAACTCGGGAGAGCTCTATTACCTTGCATAACTTTTA
14603401 GATTTGTGTGATTAAATTGTTTCAAACCTAATTCATCCTTGTTACTTCATATGAATTCTAAGACA
456 GATTTGTGTGATTAAATTGTTTCAAACCTAATTCATCCTTGTTACTTCATATGAATTCTAAGACA
14603466 CCCTTAGTTAAATATGATCATGGTAGTATGCATGTTTTTCTAAGTAAAAGATTCCAAAATGACAA
521 CCCTTAGTTAAATATGATCATGGTAGTATGCATGTTTTTCTAAGTAAAAGATTCCAAAATGACAA
14603531 TATTGGTTTTAAAAAGAGTTCATGAAAGATCGAGTTGCTATGGAATATTTTTCGGAACATTATGA
586 TATTGGTTTTAAAAAGAGTTCATGAAAGATCGAGTTGCTATGGAATATTTTTCGGAACATTATGA
14603596 GCATGATAAAAATGAATTAAGTCAATTGATGTGATTATTCTAGCCTAAACATGTTATTGTTGTTG
651 GCATGATAAAAATGAATTAAGTCAATTGATGTGATTATTCTAGCCTAAACATGTTATTGTTGTTG
14603661 AAATCTTGTGAATTTTGCTGCTAAATCCATCTTGTGAAT
716 AAATCTTGTGAATTTTGCTGCTAAATCCATCTTGTGAAT
14603700 CTTGAGGAGCACTTTGCGAAGGAACAAACATGATAATTGAAGGAAGCTATTATGATTGATTCCCA
1 CTTGAGGAGCACTTTGCGAAGGAACAAACATGATAATTGAAGGAAGCTATTATGATTGATTCCCA
14603765 GAGAACTGTCGAATCAATTAGAGCTTATTATTCTTTATATTTATTTTATTTTGATATTAATCATG
66 GAGAACTGTCGAATCAATTAGAGCTTATTATTCTTTATATTTATTTTATTTTGATATTAATCATG
14603830 TTCACAATTTGTTTTGTTGTTTTTCTATCAACAATGGTAGCTTAATTCTGTTTTGCTAGAATGAT
131 TTCACAATTTGTTTTGTTGTTTTTCTATCAACAATGGTAGCTTAATTCTGTTTTGCTAGAATGAT
14603895 TACATTAATTTGATGAAGTACATTTGATTTATGTTCATAATGTTTTATACCTCAATCAATCATAC
196 TACATTAATTTGATGAAGTACATTTGATTTATGTTCATAATGTTTTATACCTCAATCAATCATAC
14603960 TTTCAATTAAAATCATGCATGTATTTCATCCATTAAAATGTGATTGAATGCATTAGAATTAGTTG
261 TTTCAATTAAAATCATGCATGTATTTCATCCATTAAAATGTGATTGAATGCATTAGAATTAGTTG
14604025 ACCGATCCTATCTAAACAATGATTAATGGACGGAATAATTGAAAGCTGCATGCTTAATTTAGATC
326 ACCGATCCTATCTAAACAATGATTAATGGACGGAATAATTGAAAGCTGCATGCTTAATTTAGATC
14604090 CTAGCCCGATTAAATTAAAGGTTCGTAATAACTCGGGAGAGCTCTATTACCTTGCATAACTTTTA
391 CTAGCCCGATTAAATTAAAGGTTCGTAATAACTCGGGAGAGCTCTATTACCTTGCATAACTTTTA
14604155 GATTTGTGTGATTAAATTGTTTCAAACCTAATTCATCCTTGTTACTTCATATGAATTCTAAGACA
456 GATTTGTGTGATTAAATTGTTTCAAACCTAATTCATCCTTGTTACTTCATATGAATTCTAAGACA
14604220 CCCTTAGTTAAATATGATCATGGTAGTATGCATGTTTTTCTAAGTAAAAGATTCCAAAATGACAA
521 CCCTTAGTTAAATATGATCATGGTAGTATGCATGTTTTTCTAAGTAAAAGATTCCAAAATGACAA
14604285 TATTGGTTTTAAAAAGAGTTCATGAAAGATCGAGTTGCTATGGAATATTTTTCGGAACATTATGA
586 TATTGGTTTTAAAAAGAGTTCATGAAAGATCGAGTTGCTATGGAATATTTTTCGGAACATTATGA
14604350 GCATGATAAAAATGAATTAAGTCAATTGATGTGATTATTCTAGCCTAAACATGTTATTGTTGTTG
651 GCATGATAAAAATGAATTAAGTCAATTGATGTGATTATTCTAGCCTAAACATGTTATTGTTGTTG
14604415 AAATCTTGTGAATTTTGCTGCTAAATCCATCTT
716 AAATCTTGTGAATTTTGCTGCTAAATCCATCTT
14604448 TCATTTTATT
Statistics
Matches: 748, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
754 748 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (754 bp):
CTTGAGGAGCACTTTGCGAAGGAACAAACATGATAATTGAAGGAAGCTATTATGATTGATTCCCA
GAGAACTGTCGAATCAATTAGAGCTTATTATTCTTTATATTTATTTTATTTTGATATTAATCATG
TTCACAATTTGTTTTGTTGTTTTTCTATCAACAATGGTAGCTTAATTCTGTTTTGCTAGAATGAT
TACATTAATTTGATGAAGTACATTTGATTTATGTTCATAATGTTTTATACCTCAATCAATCATAC
TTTCAATTAAAATCATGCATGTATTTCATCCATTAAAATGTGATTGAATGCATTAGAATTAGTTG
ACCGATCCTATCTAAACAATGATTAATGGACGGAATAATTGAAAGCTGCATGCTTAATTTAGATC
CTAGCCCGATTAAATTAAAGGTTCGTAATAACTCGGGAGAGCTCTATTACCTTGCATAACTTTTA
GATTTGTGTGATTAAATTGTTTCAAACCTAATTCATCCTTGTTACTTCATATGAATTCTAAGACA
CCCTTAGTTAAATATGATCATGGTAGTATGCATGTTTTTCTAAGTAAAAGATTCCAAAATGACAA
TATTGGTTTTAAAAAGAGTTCATGAAAGATCGAGTTGCTATGGAATATTTTTCGGAACATTATGA
GCATGATAAAAATGAATTAAGTCAATTGATGTGATTATTCTAGCCTAAACATGTTATTGTTGTTG
AAATCTTGTGAATTTTGCTGCTAAATCCATCTTGTGAAT
Found at i:14612370 original size:19 final size:19
Alignment explanation
Indices: 14612346--14612418 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
14612336 AATCTTCAGG
14612346 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14612365 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14612384 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14612403 GATATGCAATTTTAGA
1 GATATGCAATCTTAGA
14612419 AGATATGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14613254 original size:259 final size:256
Alignment explanation
Indices: 14612795--14613308 Score: 938
Period size: 259 Copynumber: 2.0 Consensus size: 256
14612785 TAATTTGAAT
*
14612795 GGCGTCGTTTAAAGGAGAAGGGAAAATTGCCCTTCAAGGCCCTCTATGTAATTCGAGCGTTCAAT
1 GGCGTCGTTTAAAGGAGAAGGGAAAATTGCCCTTCAAGCCCCTCTATGTAATTCGAGCGTTCAAT
* *
14612860 TAAGTCCTCCAGACTTTATTTATTTGTGAATTTACCCCGGATCTTTACTGGCGATCCAATTTAGT
66 TAAGTCATCCAGACTTTATTTATTTGTGAATTTACCCCGAATCTTTACTGGCGATCCAATTTAGT
14612925 CCATTTTCATATTTTCTTTAAAAATCAATATTTTTGATAATGCAATTGTATTCTTCTAATTTTTA
131 CCATTTTCATATTTTCTTTAAAAATCAATATTTTTGATAATGCAATTGTATTCTTCTAATTTTTA
14612990 TTTTATAATTCTCATATGCAATTATTATTATTTTTTTATATGTATATTTAAGCATGTATTTATC
196 TTTTATAATTCTCATATGC-A--ATTATTATTTTTTTATATGTATATTTAAGCATGTATTTATC
* *
14613054 GGCGTCGTTTAGAGGAGAAGGGAAAATTGCCCTTCCAGCCCCTCTATGTAATTCGAGCGTTCAAT
1 GGCGTCGTTTAAAGGAGAAGGGAAAATTGCCCTTCAAGCCCCTCTATGTAATTCGAGCGTTCAAT
14613119 TAAGTCATCCAGACTTTATTTATTTGTGAATTTACCCCGAATCTTTACTGGCGATCCAATTTAGT
66 TAAGTCATCCAGACTTTATTTATTTGTGAATTTACCCCGAATCTTTACTGGCGATCCAATTTAGT
* *
14613184 TCATTTTCATATTTTCTTTAAAAATCAATATTTTTGATAATGCAATTGTATTCTTTTAATTTTTA
131 CCATTTTCATATTTTCTTTAAAAATCAATATTTTTGATAATGCAATTGTATTCTTCTAATTTTTA
14613249 TTTTATAATTCTCATATGCAATTATTATTTTTTTATATGTATATTTAAGCATGTATTTAT
196 TTTTATAATTCTCATATGCAATTATTATTTTTTTATATGTATATTTAAGCATGTATTTAT
14613309 GTTTTTTATA
Statistics
Matches: 248, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
256 40 0.16
258 1 0.00
259 207 0.83
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (256 bp):
GGCGTCGTTTAAAGGAGAAGGGAAAATTGCCCTTCAAGCCCCTCTATGTAATTCGAGCGTTCAAT
TAAGTCATCCAGACTTTATTTATTTGTGAATTTACCCCGAATCTTTACTGGCGATCCAATTTAGT
CCATTTTCATATTTTCTTTAAAAATCAATATTTTTGATAATGCAATTGTATTCTTCTAATTTTTA
TTTTATAATTCTCATATGCAATTATTATTTTTTTATATGTATATTTAAGCATGTATTTATC
Found at i:14615666 original size:24 final size:24
Alignment explanation
Indices: 14615638--14615683 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14615628 ATCAAAGGAT
*
14615638 GGAAAAGCTA-GAGCAGTTTCAAAA
1 GGAAAAGC-AGGAGCAGCTTCAAAA
*
14615662 GGAAATGCAGGAGCAGCTTCAA
1 GGAAAAGCAGGAGCAGCTTCAA
14615684 CGACAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.41, C:0.15, G:0.28, T:0.15
Consensus pattern (24 bp):
GGAAAAGCAGGAGCAGCTTCAAAA
Found at i:14619812 original size:132 final size:132
Alignment explanation
Indices: 14619638--14620532 Score: 1411
Period size: 132 Copynumber: 6.8 Consensus size: 132
14619628 TTGACAGCGA
*
14619638 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14619703 TCTTCTTCCCTGGACAACAGCGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
14619768 GG
131 AG
* * *
14619770 AGCAGATTGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTCAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
14619835 TCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14619900 AG
131 AG
* * *
14619902 AGCAAATCGAAGATGGCGGATTTTACCTCCCTTTGGGTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
14619967 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
14620032 AA
131 AG
* * *
14620034 AGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14620099 TCTACTTCCTTGGACAACAGTGGAATAGATTGAAGATTTCAGGTATTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14620164 AG
131 AG
*
14620166 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
14620231 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14620296 AG
131 AG
*
14620298 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
** * *
14620362 TCATA-TATCCCTGGTTAGCAGTGGAATAGGTTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
66 TC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
*
14620426 GTGG
129 GTAG
* * * *
14620430 AGCAAATCGAAGATGGTGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14620494 TCATA-TATCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 TC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
14620533 GTAAGTCCTA
Statistics
Matches: 716, Mismatches: 45, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
131 3 0.00
132 713 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
AG
Found at i:14620882 original size:19 final size:19
Alignment explanation
Indices: 14620858--14620968 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
14620848 AATCTTCAGG
14620858 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14620877 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
14620896 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14620915 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14620934 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14620953 GATATGCAATTTTAGA
1 GATATGCAATCTTAGA
14620969 AGATATGATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14620908 original size:38 final size:38
Alignment explanation
Indices: 14620865--14620968 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
14620855 AGGGATATGC
14620865 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
14620903 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
14620941 AATCTTAGATATGATATGCAATTTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
14620969 AGATATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:14624999 original size:132 final size:132
Alignment explanation
Indices: 14624825--14625719 Score: 1411
Period size: 132 Copynumber: 6.8 Consensus size: 132
14624815 TTGACAGCGA
*
14624825 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14624890 TCTTCTTCCCTGGACAACAGCGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
14624955 GG
131 AG
* * *
14624957 AGCAGATTGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTCAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
14625022 TCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14625087 AG
131 AG
* * *
14625089 AGCAAATCGAAGATGGCGGATTTTACCTCCCTTTGGGTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
14625154 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
14625219 AA
131 AG
* * *
14625221 AGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14625286 TCTACTTCCTTGGACAACAGTGGAATAGATTGAAGATTTCAGGTATTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14625351 AG
131 AG
*
14625353 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
14625418 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
14625483 AG
131 AG
*
14625485 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
** * *
14625549 TCATA-TATCCCTGGTTAGCAGTGGAATAGGTTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
66 TC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
*
14625613 GTGG
129 GTAG
* * * *
14625617 AGCAAATCGAAGATGGTGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
14625681 TCATA-TATCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 TC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
14625720 GTAAGTCCTA
Statistics
Matches: 716, Mismatches: 45, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
131 3 0.00
132 713 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
AG
Found at i:14626069 original size:19 final size:19
Alignment explanation
Indices: 14626045--14626155 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
14626035 AATCTTCAGG
14626045 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14626064 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
14626083 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14626102 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14626121 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14626140 GATATGCAATTTTAGA
1 GATATGCAATCTTAGA
14626156 AGATATGATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14626095 original size:38 final size:38
Alignment explanation
Indices: 14626052--14626155 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
14626042 AGGGATATGC
14626052 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
14626090 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
14626128 AATCTTAGATATGATATGCAATTTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
14626156 AGATATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Done.