Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 49 of 161
Found at i:15022825 original size:63 final size:63
Alignment explanation
Indices: 15022708--15022849 Score: 149
Period size: 63 Copynumber: 2.3 Consensus size: 63
15022698 AATGATTGCA
* * ** * * * * *
15022708 CGTGTTGTGGTGCTTGTGTAAAATAAAATGGTGCTGAATATGTTGATGTAGGGAATGATTATG
1 CGTGTTGTGGTGCTTGCGTAAAATAAAACGGAACTAAAGATGATGATATAGGGAATGAGTATG
* * * *
15022771 CGTGTTGTGGTGGTTGCGTAAAATAAAACGGAACTAAAGGTGATGATATGGGGAATGAGTGTG
1 CGTGTTGTGGTGCTTGCGTAAAATAAAACGGAACTAAAGATGATGATATAGGGAATGAGTATG
* *
15022834 CATGTTGTGATGCTTG
1 CGTGTTGTGGTGCTTG
15022850 TGACAAAAAA
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.27, C:0.06, G:0.34, T:0.33
Consensus pattern (63 bp):
CGTGTTGTGGTGCTTGCGTAAAATAAAACGGAACTAAAGATGATGATATAGGGAATGAGTATG
Found at i:15028443 original size:12 final size:12
Alignment explanation
Indices: 15028426--15028450 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15028416 GGTGTTTATT
15028426 CGGTTAACCGAC
1 CGGTTAACCGAC
15028438 CGGTTAACCGAC
1 CGGTTAACCGAC
15028450 C
1 C
15028451 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:15028625 original size:9 final size:9
Alignment explanation
Indices: 15028611--15028665 Score: 85
Period size: 9 Copynumber: 6.2 Consensus size: 9
15028601 TTTGGTTAAA
*
15028611 AATTACCCG
1 AATTAACCG
*
15028620 AATTACCCG
1 AATTAACCG
15028629 AATTAACCG
1 AATTAACCG
15028638 AATTAACCG
1 AATTAACCG
15028647 AATTAACCG
1 AATTAACCG
15028656 AATT-ACCG
1 AATTAACCG
15028664 AA
1 AA
15028666 AAATACCCGA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
8 6 0.13
9 39 0.87
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (9 bp):
AATTAACCG
Found at i:15039718 original size:15 final size:15
Alignment explanation
Indices: 15039698--15039727 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15039688 TTTCATTTGG
15039698 CCCTCTAAGCAGTAA
1 CCCTCTAAGCAGTAA
15039713 CCCTCTAAGCAGTAA
1 CCCTCTAAGCAGTAA
15039728 ATAGTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.13, T:0.20
Consensus pattern (15 bp):
CCCTCTAAGCAGTAA
Found at i:15044581 original size:37 final size:37
Alignment explanation
Indices: 15044531--15044604 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
15044521 AAATTTAAAC
15044531 CCGATGGCCGTATTGACCGATACAAAGCTCGACTTGT
1 CCGATGGCCGTATTGACCGATACAAAGCTCGACTTGT
15044568 CCGATGGCCGTATTGACCGATACAAAGCTCGACTTGT
1 CCGATGGCCGTATTGACCGATACAAAGCTCGACTTGT
15044605 GGCTAAGGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (37 bp):
CCGATGGCCGTATTGACCGATACAAAGCTCGACTTGT
Found at i:15045037 original size:136 final size:136
Alignment explanation
Indices: 15044793--15045065 Score: 528
Period size: 136 Copynumber: 2.0 Consensus size: 136
15044783 GATTTCCCAC
15044793 CAGGGTTTGAAGAAAACAAGGACCAAGTGTGTAAGTTGAAGAAGTCCTTGTATGGGCTGAAACAA
1 CAGGGTTTGAAGAAAACAAGGACCAAGTGTGTAAGTTGAAGAAGTCCTTGTATGGGCTGAAACAA
*
15044858 TCTCCACGAGCGTGGTTCAGCCGATTTGCAAAAGCTATAACTAGTAGAAATTACATTCAAGGACA
66 TCTCCACGAGCGTGGTTCAGCCGATTTGCAAAAGCTATAACTAGCAGAAATTACATTCAAGGACA
15044923 GGCAGA
131 GGCAGA
15044929 CAGGGTTTGAAGAAAACAAGGACCAAGTGTGTAAGTTGAAGAAGTCCTTGTATGGGCTGAAACAA
1 CAGGGTTTGAAGAAAACAAGGACCAAGTGTGTAAGTTGAAGAAGTCCTTGTATGGGCTGAAACAA
*
15044994 TCTCCACGAGCGTGGTTCAGCCGATTTGCAAAAGCTATGACTAGCAGAAATTACATTCAAGGACA
66 TCTCCACGAGCGTGGTTCAGCCGATTTGCAAAAGCTATAACTAGCAGAAATTACATTCAAGGACA
15045059 GGCAGA
131 GGCAGA
15045065 C
1 C
15045066 CACACCATGT
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.22
Consensus pattern (136 bp):
CAGGGTTTGAAGAAAACAAGGACCAAGTGTGTAAGTTGAAGAAGTCCTTGTATGGGCTGAAACAA
TCTCCACGAGCGTGGTTCAGCCGATTTGCAAAAGCTATAACTAGCAGAAATTACATTCAAGGACA
GGCAGA
Found at i:15046891 original size:21 final size:21
Alignment explanation
Indices: 15046867--15046907 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
15046857 TTAATTGGGG
15046867 AAAGGTATGAAATTTCCCTCC
1 AAAGGTATGAAATTTCCCTCC
15046888 AAAGGTATGAAATTTCCCTC
1 AAAGGTATGAAATTTCCCTC
15046908 TAAATAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (21 bp):
AAAGGTATGAAATTTCCCTCC
Found at i:15047117 original size:2 final size:2
Alignment explanation
Indices: 15047110--15047159 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
15047100 ACGTACATTT
15047110 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
15047152 TC TC TC TC
1 TC TC TC TC
15047160 AAGCTTTAGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:15047289 original size:21 final size:21
Alignment explanation
Indices: 15047264--15047305 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15047254 ACGAAAAGCT
*
15047264 CCTCTTGTGAAACTAAAGCAA
1 CCTCTTGCGAAACTAAAGCAA
15047285 CCTCTTGCGAAACTAAAGCAA
1 CCTCTTGCGAAACTAAAGCAA
15047306 TCATTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.21
Consensus pattern (21 bp):
CCTCTTGCGAAACTAAAGCAA
Found at i:15052202 original size:16 final size:18
Alignment explanation
Indices: 15052162--15052207 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
15052152 ATTAAACTAA
*
15052162 ATATATCTTGAATTGATC
1 ATATATCTTGAATTGAGC
15052180 ATATATCTTGAATTGAGC
1 ATATATCTTGAATTGAGC
15052198 -T-TATCTTGAA
1 ATATATCTTGAA
15052208 GATGTTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 9 0.33
17 1 0.04
18 17 0.63
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (18 bp):
ATATATCTTGAATTGAGC
Found at i:15055573 original size:19 final size:20
Alignment explanation
Indices: 15055551--15055603 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
15055541 ACTCAAGGGG
*
15055551 ACTT-TACCGATACAAGTCC
1 ACTTCTACCCATACAAGTCC
* *
15055570 ACTTCTA-CTATACAGGTCC
1 ACTTCTACCCATACAAGTCC
15055589 ACTTCTACCCATACA
1 ACTTCTACCCATACA
15055604 TCTTGTGAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 21 0.72
20 8 0.28
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (20 bp):
ACTTCTACCCATACAAGTCC
Found at i:15056023 original size:28 final size:29
Alignment explanation
Indices: 15055980--15056034 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
15055970 GATTGTAAAA
*
15055980 GGTTTCTAGTTGAGCCACAAAAGCTAGAT
1 GGTTTCTAGTTGAGCCACAAAAACTAGAT
* *
15056009 GGTTT-TAGTTTAGCCATAAAAACTAG
1 GGTTTCTAGTTGAGCCACAAAAACTAG
15056035 GGGAGAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (29 bp):
GGTTTCTAGTTGAGCCACAAAAACTAGAT
Found at i:15064176 original size:352 final size:352
Alignment explanation
Indices: 15063488--15064191 Score: 982
Period size: 352 Copynumber: 2.0 Consensus size: 352
15063478 AAGTCCCACA
* * * *
15063488 TGCCTAGTAAATTTTGGGGTGAGTCTGTATTAACTGCCTATTTGTTGATAAATTGACTACCTACT
1 TGCCTAGTAAATTTTGGGGTAAGACTGTATTAACTGCATATTTGTTGATAAATTAACTACCTACT
* * ** *
15063553 CCTCTCTTGTATTGGAACTTTCCTTTTGAAATTTTATATAGTAAACCTCCTGATCTTTCTCATCT
66 CCTCTCTTGCATTAGAACAGTCCTTTTGAAATTTTATATAGTAAACCTCCAGATCTTTCTCATCT
* * * * * *
15063618 AAAAGTGTTTGGATGTCTTTGTTATGCTACCATACCTAATTATCATGATAATTTTTCTCCTAAGG
131 AAAAGTATTTGGATGTCTTTGCTATGCTACCACACCCAATTATCATGATAAATTTTCTCCTAAAG
*
15063683 CTATTCCTTCTGTGTTTATGGGATACTCTAATGTTTAGAAAGGTTACTTGTTATTCAATCTTGAA
196 CTATTCCTTCTGTGTTTATGGGATACTCTAATGTTCAGAAAGGTTACTTGTTATTCAATCTTGAA
15063748 AAAAAAATTTCCTTGTTAATCGAGATGCAATATTTCATGAGACTGTGTTTCCTTTTGTATTTCCT
261 AAAAAAATTTCCTTGTTAATCGAGATGCAATATTTCATGAGACTGTGTTTCCTTTTGTATTTCCT
*
15063813 ACAAAACA-TTTTTTATTTTTCCCTAC
326 ACAAAACATTTTTTTACTTTTCCCTAC
* * * *
15063839 TGCCTAGTAAATTTTGGGGTAAGAGTGTATTAACTGTATGTTTTTTTGATAAATTAACTACCTAC
1 TGCCTAGTAAATTTTGGGGTAAGACTGTATTAACTGCAT-ATTTGTTGATAAATTAACTACCTAC
* * * * *
15063904 TCCTCTCTTGCATTAGAAGAGTCCTTTTGAACTTTTATATCGTAAACCTCCAGATCTTTCTCGTT
65 TCCTCTCTTGCATTAGAACAGTCCTTTTGAAATTTTATATAGTAAACCTCCAGATCTTTCTCATC
*
15063969 TAAAAGTATTTGGTTGTCTTTGCTATGCTACCACACCCAATTATCATGATAAATTTTCTCCTAAA
130 TAAAAGTATTTGGATGTCTTTGCTATGCTACCACACCCAATTATCATGATAAATTTTCTCCTAAA
* *
15064034 GCTATTCCTTCTGTGTTTATGGGATATTCTACTGTTCAGAAAGGTTACTTGTTATTCAATCTTGA
195 GCTATTCCTTCTGTGTTTATGGGATACTCTAATGTTCAGAAAGGTTACTTGTTATTCAATCTTGA
* ** ** * * *** * *
15064099 AACAAATTTTTTTTTGTTAATTGCGATGTTGTATTTCATGATA-TCGTGTTTCCTTTT-TCCTTT
260 AAAAAAAATTTCCTTGTTAATCGAGATGCAATATTTCATGAGACT-GTGTTTCCTTTTGT-ATTT
*
15064162 CTTACAAAACATTTTTTTACTTTTCCCTAC
323 CCTACAAAACATTTTTTTACTTTTCCCTAC
15064192 AGTTGATAGC
Statistics
Matches: 307, Mismatches: 42, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
351 36 0.12
352 254 0.83
353 17 0.06
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (352 bp):
TGCCTAGTAAATTTTGGGGTAAGACTGTATTAACTGCATATTTGTTGATAAATTAACTACCTACT
CCTCTCTTGCATTAGAACAGTCCTTTTGAAATTTTATATAGTAAACCTCCAGATCTTTCTCATCT
AAAAGTATTTGGATGTCTTTGCTATGCTACCACACCCAATTATCATGATAAATTTTCTCCTAAAG
CTATTCCTTCTGTGTTTATGGGATACTCTAATGTTCAGAAAGGTTACTTGTTATTCAATCTTGAA
AAAAAAATTTCCTTGTTAATCGAGATGCAATATTTCATGAGACTGTGTTTCCTTTTGTATTTCCT
ACAAAACATTTTTTTACTTTTCCCTAC
Found at i:15067157 original size:23 final size:23
Alignment explanation
Indices: 15067127--15067170 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
15067117 TAAATGTTTC
15067127 ATAATATAAATAAGAATATTTTA
1 ATAATATAAATAAGAATATTTTA
* *
15067150 ATAATATAAATATGAGTATTT
1 ATAATATAAATAAGAATATTT
15067171 ATCCCATCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
ATAATATAAATAAGAATATTTTA
Found at i:15067863 original size:24 final size:25
Alignment explanation
Indices: 15067831--15067880 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
15067821 AAACTATGGT
*
15067831 ATTCTTATGAAGTGAGTCTT-TTTA
1 ATTCTTATGAAGTGAATCTTATTTA
15067855 ATTCTTATGAAGTGAATCTTATTTA
1 ATTCTTATGAAGTGAATCTTATTTA
15067880 A
1 A
15067881 AAACTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTTATGAAGTGAATCTTATTTA
Found at i:15069834 original size:41 final size:41
Alignment explanation
Indices: 15069789--15069983 Score: 250
Period size: 41 Copynumber: 4.8 Consensus size: 41
15069779 CACTGGTACA
*
15069789 AAGCCTTCTAGGCTCAAGGCCTGATACAATACACCGACACG
1 AAGCCTACTAGGCTCAAGGCCTGATACAATACACCGACACG
* * *
15069830 AAGCCTACTAGGCTCACA-GCTTGATACAATACACCGGCATG
1 AAGCCTACTAGGCTCA-AGGCCTGATACAATACACCGACACG
* * * *
15069871 AAGCCTGCTAGGCTCAAGGCCTGATATAATACATCGACACA
1 AAGCCTACTAGGCTCAAGGCCTGATACAATACACCGACACG
* * *
15069912 AAGCCTGCTAGGCTCAAGTCCTGATACAATAGACC-AGCACG
1 AAGCCTACTAGGCTCAAGGCCTGATACAATACACCGA-CACG
*
15069953 AAGCCTACTAGGCTCAAGGCCTGACACAATA
1 AAGCCTACTAGGCTCAAGGCCTGATACAATA
15069984 TCTCCGGTAT
Statistics
Matches: 132, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 2 0.02
41 129 0.98
42 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (41 bp):
AAGCCTACTAGGCTCAAGGCCTGATACAATACACCGACACG
Found at i:15084383 original size:22 final size:22
Alignment explanation
Indices: 15084358--15084399 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
15084348 TATTGTTCGG
15084358 ATGACTAAT-AGAAAAGCAATAA
1 ATGACTAATGA-AAAAGCAATAA
15084380 ATGACTAATGAAAAAGCAAT
1 ATGACTAATGAAAAAGCAAT
15084400 TCAACATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.19
Consensus pattern (22 bp):
ATGACTAATGAAAAAGCAATAA
Found at i:15085932 original size:24 final size:24
Alignment explanation
Indices: 15085773--15085933 Score: 112
Period size: 24 Copynumber: 6.6 Consensus size: 24
15085763 TCCCGTAAAC
* *
15085773 CCACCTGTTCCAATCTATAAACCT
1 CCACCAGTTCCAGTCTATAAACCT
15085797 CCACCAGTTCCAGTCTATAAACCT
1 CCACCAGTTCCAGTCTATAAACCT
* *
15085821 CCTCCAGTTCCAG--TAAAACCACTTCCT
1 CCACCAGTTCCAGTCTATAA--A---CCT
* * *
15085848 CCACCTGTTCCAATCTACAAACCT
1 CCACCAGTTCCAGTCTATAAACCT
** ** * * *
15085872 CCACCAGTTGAAAAACCA-CATCCT
1 CCACCAGTT-CCAGTCTATAAACCT
*
15085896 CCACCTGTTCCAGTCTATAAACCT
1 CCACCAGTTCCAGTCTATAAACCT
15085920 CCACCAGTTCCAGT
1 CCACCAGTTCCAGT
15085934 ATACAAGAAG
Statistics
Matches: 104, Mismatches: 24, Indels: 18
0.71 0.16 0.12
Matches are distributed among these distances:
22 4 0.04
23 3 0.03
24 75 0.72
25 4 0.04
27 14 0.13
29 4 0.04
ACGTcount: A:0.29, C:0.39, G:0.07, T:0.25
Consensus pattern (24 bp):
CCACCAGTTCCAGTCTATAAACCT
Found at i:15085963 original size:57 final size:56
Alignment explanation
Indices: 15085794--15086284 Score: 304
Period size: 48 Copynumber: 8.9 Consensus size: 56
15085784 AATCTATAAA
*
15085794 CCTCCACCAGTTCCAGTCTATAAACCTCCTCCAGTTCCAG--T--AA-AACCACT-T
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAACCA-TAT
* * * *
15085845 CCTCCACCTGTTCCAATCTACAAACCTCCACCAGTT---G---A-AA-AACCACAT
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAACCATAT
* *
15085893 CCTCCACCTGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAAGCCATGT
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAA-CCATAT
* * * **
15085950 CCTCCACCAGTTCCAGTCTATAAATCTCCTCCGGTTCCAGTATACAAGAAACCGCAT
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAG-AACCATAT
* *
15086007 CCTCCTCCAGTTCCAGTCTATAAGAAACCACATCCACCTCCAGTTCCAGTATACAAGAAACCATG
1 CCTCCACCAGTTCCAGTCTAT---AAA-C-C-TCCA---CCAGTTCCAGTATACAAG-AACCATA
15086072 T
56 T
* * * *
15086073 CCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC-G-------GAACCACAT
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAACCATAT
* *
15086121 CCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCTCCAGTTCCAGTATACAAGAAACCATG
1 CCTCCACCAGTTCCAGTCTAT---AAA-C-C-TCCA---CCAGTTCCAGTATACAAG-AACCATA
15086186 T
56 T
* * * *
15086187 CCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC-G-------GAACCACAT
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAACCATAT
* * * * *
15086235 CCTCCGCCAGTTCCAGTCCATAAGCCTCCTCCAGTTCCGGTATACAAGAA
1 CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAA
15086285 AAGAGTCCCT
Statistics
Matches: 351, Mismatches: 42, Indels: 89
0.73 0.09 0.18
Matches are distributed among these distances:
48 109 0.31
49 3 0.01
51 36 0.10
53 1 0.00
54 4 0.01
55 2 0.01
56 7 0.02
57 95 0.27
58 3 0.01
60 9 0.03
61 2 0.01
62 1 0.00
63 9 0.03
65 1 0.00
66 69 0.20
ACGTcount: A:0.28, C:0.37, G:0.11, T:0.23
Consensus pattern (56 bp):
CCTCCACCAGTTCCAGTCTATAAACCTCCACCAGTTCCAGTATACAAGAACCATAT
Found at i:15086020 original size:33 final size:33
Alignment explanation
Indices: 15085975--15086089 Score: 158
Period size: 33 Copynumber: 3.5 Consensus size: 33
15085965 GTCTATAAAT
* *
15085975 CTCCTCCGGTTCCAGTATACAAGAAACCGCATC
1 CTCCTCCAGTTCCAGTATACAAGAAACCACATC
* *
15086008 CTCCTCCAGTTCCAGTCTATAAGAAACCACATC
1 CTCCTCCAGTTCCAGTATACAAGAAACCACATC
* **
15086041 CACCTCCAGTTCCAGTATACAAGAAACCATGTC
1 CTCCTCCAGTTCCAGTATACAAGAAACCACATC
*
15086074 CTCCCCCAGTTCCAGT
1 CTCCTCCAGTTCCAGT
15086090 CTATAAATCT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.28, C:0.37, G:0.12, T:0.23
Consensus pattern (33 bp):
CTCCTCCAGTTCCAGTATACAAGAAACCACATC
Found at i:15086026 original size:114 final size:110
Alignment explanation
Indices: 15085885--15086257 Score: 486
Period size: 114 Copynumber: 3.3 Consensus size: 110
15085875 CCAGTTGAAA
* * *
15085885 AACCACATCCTCCACCTGTTCCAGTCTAT-AAA-C-C-TCCA-CCAGTTCCAGTATACAAGAAGC
1 AACCACATCCTCCGCCAGTTCCAGTCTATAAAACCACATCCACCCAGTTCCAGTATACAAGAAAC
* *
15085945 CATGTCCTCCACCAGTTCCAGTCTATAAATCTCCTCCGGTTCCAGTATACAAG
66 CATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC-G-------G
* *
15085998 AAACCGCATCCTCCTCCAGTTCCAGTCTATAAGAAACCACATCCACCTCCAGTTCCAGTATACAA
1 -AACCACATCCTCCGCCAGTTCCAGTCTAT-A-AAACCACATCCA-C-CCAGTTCCAGTATACAA
15086063 GAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCCGG
61 GAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCCGG
15086113 AACCACATCCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCTCCAGTTCCAGTATACAAG
1 AACCACATCCTCCGCCAGTTCCAGTCTAT-A-AAACCACATCCA-C-CCAGTTCCAGTATACAAG
15086178 AAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCCGG
62 AAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCCGG
*
15086227 AACCACATCCTCCGCCAGTTCCAGTCCATAA
1 AACCACATCCTCCGCCAGTTCCAGTCTATAA
15086258 GCCTCCTCCA
Statistics
Matches: 241, Mismatches: 9, Indels: 20
0.89 0.03 0.07
Matches are distributed among these distances:
112 1 0.00
113 1 0.00
114 166 0.69
115 1 0.00
117 3 0.01
118 1 0.00
119 1 0.00
120 4 0.02
122 1 0.00
123 62 0.26
ACGTcount: A:0.28, C:0.37, G:0.11, T:0.23
Consensus pattern (110 bp):
AACCACATCCTCCGCCAGTTCCAGTCTATAAAACCACATCCACCCAGTTCCAGTATACAAGAAAC
CATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCCGG
Found at i:15086151 original size:33 final size:33
Alignment explanation
Indices: 15086113--15086209 Score: 131
Period size: 33 Copynumber: 2.9 Consensus size: 33
15086103 CCAGTTCCGG
*
15086113 AACCACATCCTCCGCCAGTTCCAGTCTATAAGA
1 AACCACATCCTCCCCCAGTTCCAGTCTATAAGA
* * * *
15086146 AACCACATCCACCTCCAGTTCCAGTATACAAGA
1 AACCACATCCTCCCCCAGTTCCAGTCTATAAGA
**
15086179 AACCATGTCCTCCCCCAGTTCCAGTCTATAA
1 AACCACATCCTCCCCCAGTTCCAGTCTATAA
15086210 ATCTCCTCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.31, C:0.37, G:0.10, T:0.22
Consensus pattern (33 bp):
AACCACATCCTCCCCCAGTTCCAGTCTATAAGA
Found at i:15086239 original size:24 final size:24
Alignment explanation
Indices: 15086212--15086274 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
15086202 GTCTATAAAT
* *
15086212 CTCCTCCAGTTCCGGAACCA-CATC
1 CTCCTCCAGTTCCGG-ACCATAAGC
* * *
15086236 CTCCGCCAGTTCCAGTCCATAAGC
1 CTCCTCCAGTTCCGGACCATAAGC
15086260 CTCCTCCAGTTCCGG
1 CTCCTCCAGTTCCGG
15086275 TATACAAGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
23 3 0.10
24 28 0.90
ACGTcount: A:0.17, C:0.44, G:0.16, T:0.22
Consensus pattern (24 bp):
CTCCTCCAGTTCCGGACCATAAGC
Found at i:15086258 original size:114 final size:114
Alignment explanation
Indices: 15085923--15086258 Score: 537
Period size: 114 Copynumber: 2.9 Consensus size: 114
15085913 TAAACCTCCA
* * *
15085923 CCAGTTCCAGTATACAAGAAGCCATGTCCTCCACCAGTTCCAGTCTATAAATCTCCTCCGGTTCC
1 CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
* *
15085988 AGTATACAAGAAACCGCATCCTCCTCCAGTTCCAGTCTATAAGAAACCACATCCACCT
66 -G-------G-AACCACATCCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCT
15086046 CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
1 CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
15086111 GGAACCACATCCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCT
66 GGAACCACATCCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCT
15086160 CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
1 CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
*
15086225 GGAACCACATCCTCCGCCAGTTCCAGTCCATAAG
66 GGAACCACATCCTCCGCCAGTTCCAGTCTATAAG
15086259 CCTCCTCCAG
Statistics
Matches: 207, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
114 143 0.69
115 1 0.00
122 1 0.00
123 62 0.30
ACGTcount: A:0.28, C:0.37, G:0.12, T:0.23
Consensus pattern (114 bp):
CCAGTTCCAGTATACAAGAAACCATGTCCTCCCCCAGTTCCAGTCTATAAATCTCCTCCAGTTCC
GGAACCACATCCTCCGCCAGTTCCAGTCTATAAGAAACCACATCCACCT
Found at i:15086353 original size:57 final size:57
Alignment explanation
Indices: 15086256--15086363 Score: 144
Period size: 57 Copynumber: 1.9 Consensus size: 57
15086246 TCCAGTCCAT
* * * * * *
15086256 AAGCCTCCTCCAGTTCCGGTATACAAGAAAAGAGTCCCTCCTCCGGTTCCAATCTAC
1 AAGCCCCCTCCAGTTCCGGTATACAACAAAACACTACCTCCCCCGGTTCCAATCTAC
* *
15086313 AAGCCCCCTCCAGTTCCTGTATACAACAAACCACTACCTCCCCCGGTTCCA
1 AAGCCCCCTCCAGTTCCGGTATACAACAAAACACTACCTCCCCCGGTTCCA
15086364 GTGTATACGA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 43 1.00
ACGTcount: A:0.26, C:0.40, G:0.13, T:0.21
Consensus pattern (57 bp):
AAGCCCCCTCCAGTTCCGGTATACAACAAAACACTACCTCCCCCGGTTCCAATCTAC
Found at i:15086463 original size:18 final size:18
Alignment explanation
Indices: 15086440--15086475 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
15086430 TACAAGCCAC
15086440 TCCCTCCACTTCCC-AAGA
1 TCCCTCCA-TTCCCTAAGA
15086458 TCCCTCCATTCCCTAAGA
1 TCCCTCCATTCCCTAAGA
15086476 AGCCATGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.22, C:0.47, G:0.06, T:0.25
Consensus pattern (18 bp):
TCCCTCCATTCCCTAAGA
Found at i:15086547 original size:60 final size:60
Alignment explanation
Indices: 15086483--15086602 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
15086473 AGAAGCCATG
15086483 CCCTCCCCTTCCTAAGCTACCTCCTCTTCCC-AAGATTCCTCCCAAGTATTTCCACCACCA
1 CCCTCCCCTTCCTAAGCTACCTCCTC-TCCCTAAGATTCCTCCCAAGTATTTCCACCACCA
15086543 CCCTCCCCTTCCTAAGCTACCTCCTCTCCCTAAGATTCCTCCCAAGTATTTCCACCACCA
1 CCCTCCCCTTCCTAAGCTACCTCCTCTCCCTAAGATTCCTCCCAAGTATTTCCACCACCA
15086603 TCCCAAGTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
59 4 0.07
60 55 0.93
ACGTcount: A:0.20, C:0.48, G:0.05, T:0.27
Consensus pattern (60 bp):
CCCTCCCCTTCCTAAGCTACCTCCTCTCCCTAAGATTCCTCCCAAGTATTTCCACCACCA
Found at i:15091793 original size:29 final size:29
Alignment explanation
Indices: 15091710--15091797 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
15091700 GTTTAGAGGG
** *
15091710 TCTGAAAAAATAA-TTTGTACAAGATGGAT
1 TCTGAAAAAATAATTTTG-AGGAGATGGGT
* *
15091739 TCTGAAAAAATAGTTTTGAGGGGATGGGT
1 TCTGAAAAAATAATTTTGAGGAGATGGGT
* *
15091768 TCTGAAGAAATAATTTTGATGAGATGGGT
1 TCTGAAAAAATAATTTTGAGGAGATGGGT
15091797 T
1 T
15091798 GAGTTTTGTA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (29 bp):
TCTGAAAAAATAATTTTGAGGAGATGGGT
Found at i:15100618 original size:290 final size:290
Alignment explanation
Indices: 15100098--15100676 Score: 1158
Period size: 290 Copynumber: 2.0 Consensus size: 290
15100088 CCGTCCGGGT
15100098 TAGATCCTTTTTACCGTCAATTTCTTTTCAGAGATCCATCAAATTTTCCTTCCATTCAATCGGGA
1 TAGATCCTTTTTACCGTCAATTTCTTTTCAGAGATCCATCAAATTTTCCTTCCATTCAATCGGGA
15100163 TTTCTTCACCTTTTTATCAAATATATCAATGTTTCATCAATTTTCATATAATGAACATTCAAATC
66 TTTCTTCACCTTTTTATCAAATATATCAATGTTTCATCAATTTTCATATAATGAACATTCAAATC
15100228 ATATTCACATCAACAACAAACATTTCAAGCATTTAAGTTTATAATTCAAGTTACACGAACTTACC
131 ATATTCACATCAACAACAAACATTTCAAGCATTTAAGTTTATAATTCAAGTTACACGAACTTACC
15100293 TCGATACTTGTTCGTAAACAAAAATCTACTAATCCCAAACTTTTTTTTTCCTCGATCTAGCTTCG
196 TCGATACTTGTTCGTAAACAAAAATCTACTAATCCCAAACTTTTTTTTTCCTCGATCTAGCTTCG
15100358 TATTTGAACTTTCTGGATCTAGATAAATAC
261 TATTTGAACTTTCTGGATCTAGATAAATAC
15100388 TAGATCCTTTTTACCGTCAATTTCTTTTCAGAGATCCATCAAATTTTCCTTCCATTCAATCGGGA
1 TAGATCCTTTTTACCGTCAATTTCTTTTCAGAGATCCATCAAATTTTCCTTCCATTCAATCGGGA
15100453 TTTCTTCACCTTTTTATCAAATATATCAATGTTTCATCAATTTTCATATAATGAACATTCAAATC
66 TTTCTTCACCTTTTTATCAAATATATCAATGTTTCATCAATTTTCATATAATGAACATTCAAATC
15100518 ATATTCACATCAACAACAAACATTTCAAGCATTTAAGTTTATAATTCAAGTTACACGAACTTACC
131 ATATTCACATCAACAACAAACATTTCAAGCATTTAAGTTTATAATTCAAGTTACACGAACTTACC
15100583 TCGATACTTGTTCGTAAACAAAAATCTACTAATCCCAAACTTTTTTTTTCCTCGATCTAGCTTCG
196 TCGATACTTGTTCGTAAACAAAAATCTACTAATCCCAAACTTTTTTTTTCCTCGATCTAGCTTCG
15100648 TATTTGAACTTTCTGGATCTAGATAAATA
261 TATTTGAACTTTCTGGATCTAGATAAATA
15100677 AATTTAATCA
Statistics
Matches: 289, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
290 289 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (290 bp):
TAGATCCTTTTTACCGTCAATTTCTTTTCAGAGATCCATCAAATTTTCCTTCCATTCAATCGGGA
TTTCTTCACCTTTTTATCAAATATATCAATGTTTCATCAATTTTCATATAATGAACATTCAAATC
ATATTCACATCAACAACAAACATTTCAAGCATTTAAGTTTATAATTCAAGTTACACGAACTTACC
TCGATACTTGTTCGTAAACAAAAATCTACTAATCCCAAACTTTTTTTTTCCTCGATCTAGCTTCG
TATTTGAACTTTCTGGATCTAGATAAATAC
Found at i:15102724 original size:26 final size:28
Alignment explanation
Indices: 15102695--15102751 Score: 91
Period size: 26 Copynumber: 2.1 Consensus size: 28
15102685 TTGAGCTTTG
15102695 ACTATTAGCATAGCAACTAACT-AC-TA
1 ACTATTAGCATAGCAACTAACTGACTTA
*
15102721 ACTATTAGCATAGCAGCTAACTGACTTA
1 ACTATTAGCATAGCAACTAACTGACTTA
15102749 ACT
1 ACT
15102752 GACTTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 21 0.75
27 2 0.07
28 5 0.18
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (28 bp):
ACTATTAGCATAGCAACTAACTGACTTA
Found at i:15110956 original size:5 final size:5
Alignment explanation
Indices: 15110948--15110997 Score: 73
Period size: 5 Copynumber: 10.0 Consensus size: 5
15110938 TTCTTTTTAG
* * *
15110948 AATTT AATTT AATTT AATTT AATTT AATTT AATTT GATTT GATTT GATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT
15110998 TCTTTTACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:15112537 original size:16 final size:18
Alignment explanation
Indices: 15112508--15112540 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
15112498 AGTTAAATTT
15112508 ATTATCATACTAATTAAA
1 ATTATCATACTAATTAAA
15112526 ATTAT-ATA-TAATTAA
1 ATTATCATACTAATTAA
15112541 TGAAAGGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTATCATACTAATTAAA
Found at i:15114595 original size:26 final size:26
Alignment explanation
Indices: 15114524--15114595 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 26
15114514 TTTATGATTA
* *
15114524 ACTACCATTAAATAAGATACTCTTTT
1 ACTACCATTAAATAAGATACTCTGTC
* * *
15114550 TC-ATCATCATAAT-A-AT-CTCTGTC
1 ACTACCATTA-AATAAGATACTCTGTC
15114573 ACTACCATTAAATAAGATACTCT
1 ACTACCATTAAATAAGATACTCT
15114596 TTTTCATCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
23 9 0.27
24 8 0.24
25 8 0.24
26 8 0.24
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (26 bp):
ACTACCATTAAATAAGATACTCTGTC
Found at i:15114596 original size:49 final size:49
Alignment explanation
Indices: 15114524--15114621 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
15114514 TTTATGATTA
15114524 ACTACCATTAAATAAGATACTCTTTTTCATCATCATAATAATCTCTGTC
1 ACTACCATTAAATAAGATACTCTTTTTCATCATCATAATAATCTCTGTC
15114573 ACTACCATTAAATAAGATACTCTTTTTCATCATCATAATAATCTCTGTC
1 ACTACCATTAAATAAGATACTCTTTTTCATCATCATAATAATCTCTGTC
15114622 TACCTGGGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (49 bp):
ACTACCATTAAATAAGATACTCTTTTTCATCATCATAATAATCTCTGTC
Found at i:15114612 original size:26 final size:26
Alignment explanation
Indices: 15114534--15114613 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
15114524 ACTACCATTA
15114534 AATAAGATACTCTTTTTCATCATCAT
1 AATAAGATACTCTTTTTCATCATCAT
* ** * *
15114560 AAT-A-AT-CTCTGTCACTACCATTA-
1 AATAAGATACTCTTTTTC-ATCATCAT
15114583 AATAAGATACTCTTTTTCATCATCAT
1 AATAAGATACTCTTTTTCATCATCAT
15114609 AATAA
1 AATAA
15114614 TCTCTGTCTA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
23 9 0.23
24 8 0.21
25 8 0.21
26 14 0.36
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.39
Consensus pattern (26 bp):
AATAAGATACTCTTTTTCATCATCAT
Found at i:15115315 original size:19 final size:19
Alignment explanation
Indices: 15115283--15115335 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
15115273 ACCATTGTTC
*
15115283 TTTTTT-TCATTTTTGAGT
1 TTTTTTATCAATTTTGAGT
*
15115301 TTTTTTATCAATTTT-TGT
1 TTTTTTATCAATTTTGAGT
*
15115319 TTTTTTAATCTATTTTG
1 TTTTTT-ATCAATTTTG
15115336 TCTAATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.15, C:0.06, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTTTATCAATTTTGAGT
Found at i:15115336 original size:18 final size:18
Alignment explanation
Indices: 15115277--15115325 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
15115267 CTATTAACCA
*
15115277 TTGTTCTTTTTTTC-ATTT
1 TTGTT-TTTTTATCAATTT
15115295 TTGAGTTTTTTTATCAATTT
1 TT--GTTTTTTTATCAATTT
15115315 TTGTTTTTTTA
1 TTGTTTTTTTA
15115326 ATCTATTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 11 0.41
19 7 0.26
20 9 0.33
ACGTcount: A:0.12, C:0.06, G:0.08, T:0.73
Consensus pattern (18 bp):
TTGTTTTTTTATCAATTT
Found at i:15121271 original size:63 final size:63
Alignment explanation
Indices: 15121191--15121314 Score: 185
Period size: 63 Copynumber: 2.0 Consensus size: 63
15121181 TTACAACTCT
* * *
15121191 ATTCTATTATAGCTTTATTCCATTCCAGTAAACCAAACATACCGTTAGAGAATGAATCCACAC
1 ATTCTATTACAGCTTTATTCCATTCCAGTAAACCAAACATACCATTAGAGAATGAAGCCACAC
* * * *
15121254 ATTCTATTACAGTTTTATTTCATTCCAGTGAACCAAACATGCCATTAGAGAATGAAGCCAC
1 ATTCTATTACAGCTTTATTCCATTCCAGTAAACCAAACATACCATTAGAGAATGAAGCCAC
15121315 GCACCCCATC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (63 bp):
ATTCTATTACAGCTTTATTCCATTCCAGTAAACCAAACATACCATTAGAGAATGAAGCCACAC
Found at i:15126340 original size:44 final size:45
Alignment explanation
Indices: 15126252--15126349 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 45
15126242 AAGACTTGTA
* **
15126252 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
* *
15126297 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
15126341 TCTTCGATC
1 TCTTCGATC
15126350 AATTCTACTG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 32 0.67
45 16 0.33
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (45 bp):
TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
Found at i:15126646 original size:45 final size:44
Alignment explanation
Indices: 15126594--15127021 Score: 195
Period size: 45 Copynumber: 9.6 Consensus size: 44
15126584 TACATGAAAA
*
15126594 CAAGATCTGCTTTCTTTGATTTGCTTCGCCACGAATATGGGTAGG
1 CAAGATCTGCTTTCTTTGATCTGCTTCGCCAC-AATATGGGTAGG
* * * * * *** * *
15126639 CAAGATCTGGTATCTCTGATCTACTTCACGC-CAATACATGAAGA
1 CAAGATCTGCTTTCTTTGATCTGCTTCGC-CACAATATGGGTAGG
* * *
15126683 CAATATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGTAGG
1 CAAGATCTGCTTTCTTTGATCTGCTTCGCCA-CAATATGGGTAGG
* * * * *** * *
15126728 CAAGATCTAG-TATCTCTGATCTACTTCACGC-CAATACATGAAGA
1 CAAGATCT-GCTTTCTTTGATCTGCTTCGC-CACAATATGGGTAGG
* * * *
15126772 CAAGATTTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGG
1 CAAGATCTGCTTTCTTTGATCTGCTTCGCCA-CAATATGGGTAGG
* * * * * * *
15126817 CAAGATCTGGTATCTCTGATCTACTTTACGCCA-ATACAT--GAAGA
1 CAAGATCTGCTTTCTTTGATCTGC-TT-CGCCACA-ATATGGGTAGG
* * * *
15126861 CAAGATCTGCTTTCTTTGATCTACTCCGCCACCAGTATGGGAAGG
1 CAAGATCTGCTTTCTTTGATCTGCTTCGCCA-CAATATGGGTAGG
* * * * * *** * **
15126906 CAAGATCTGGTATCTCTGATCTACTTCACGC-CAATACATGAAAA
1 CAAGATCTGCTTTCTTTGATCTGCTTCGC-CACAATATGGGTAGG
* * *
15126950 CAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGG
1 CAAGATCTGCTTTCTTTGATCTGCTTCGCCA-CAATATGGGTAGG
* * * *
15126995 CAAGATCTGGTATCTATGATCTACTTC
1 CAAGATCTGCTTTCTTTGATCTGCTTC
15127022 ACGCCAGTAC
Statistics
Matches: 274, Mismatches: 91, Indels: 36
0.68 0.23 0.09
Matches are distributed among these distances:
42 5 0.02
43 7 0.03
44 113 0.41
45 137 0.50
46 7 0.03
47 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CAAGATCTGCTTTCTTTGATCTGCTTCGCCACAATATGGGTAGG
Found at i:15126713 original size:89 final size:89
Alignment explanation
Indices: 15126584--15127055 Score: 784
Period size: 89 Copynumber: 5.3 Consensus size: 89
15126574 TTCACACCGG
* * * * * *
15126584 TACATGAAAACAAGATCTGCTTTCTTTGATTTGCTTCGCCACGAATATGGGTAGGCAAGATCTGG
1 TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
15126649 TATCTCTGATCTACTTCACGCCAA
66 TATCTCTGATCTACTTCACGCCAA
* * *
15126673 TACATGAAGACAATATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGTAGGCAAGATCTAG
1 TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
15126738 TATCTCTGATCTACTTCACGCCAA
66 TATCTCTGATCTACTTCACGCCAA
*
15126762 TACATGAAGACAAGATTTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
1 TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
*
15126827 TATCTCTGATCTACTTTACGCCAA
66 TATCTCTGATCTACTTCACGCCAA
*
15126851 TACATGAAGACAAGATCTGCTTTCTTTGATCTACTCCGCCACCAGTATGGGAAGGCAAGATCTGG
1 TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
15126916 TATCTCTGATCTACTTCACGCCAA
66 TATCTCTGATCTACTTCACGCCAA
*
15126940 TACATGAAAACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
1 TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
* *
15127005 TATCTATGATCTACTTCACGCCAG
66 TATCTCTGATCTACTTCACGCCAA
*
15127029 TACATGAAGACATGATCTG-TTATCTTT
1 TACATGAAGACAAGATCTGCTT-TCTTT
15127056 CAACCTGCTC
Statistics
Matches: 361, Mismatches: 21, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
88 2 0.01
89 359 0.99
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (89 bp):
TACATGAAGACAAGATCTGCTTTCTTTGATCTGCTCCGCCACCAGTATGGGAAGGCAAGATCTGG
TATCTCTGATCTACTTCACGCCAA
Found at i:15129288 original size:762 final size:762
Alignment explanation
Indices: 15127825--15129348 Score: 2823
Period size: 762 Copynumber: 2.0 Consensus size: 762
15127815 CCCTTTTCGG
15127825 GTTTTCAACTCAAATCCCCTTTGGTCTTAAGGTGCCCTTTACGGGTTTTCACCCTAGCCTCTTTT
1 GTTTTCAACTCAAATCCCCTTTGGTCTTAAGGTGCCCTTTACGGGTTTTCACCCTAGCCTCTTTT
15127890 TTTTTGGAATCAAAGCGCCATTTGCGGGTTTTCACCTTGGTTCCTTCCCTTCTTCAAGTAAAGTA
66 TTTTTGGAATCAAAGCGCCATTTGCGGGTTTTCACCTTGGTTCCTTCCCTTCTTCAAGTAAAGTA
*
15127955 CCTCTTCACCGAATCTGAATTTACCGGATTAGGCAAGTTTCTTCCATTCATTTCAGCCAAGATCA
131 CCTCTTCACCGAATCTGAATTTACCGGATTAGGCAAGTTTCTTCCATCCATTTCAGCCAAGATCA
* *
15128020 GGGCTCCTCCAGAAAAGACCTTTTTTACAACATAAGGACCCTCCCAATTCGGCATCCATTTCCCC
196 AGGCTCATCCAGAAAAGACCTTTTTTACAACATAAGGACCCTCCCAATTCGGCATCCATTTCCCC
15128085 CTAAAATCCTTTTGTAGAGGAAGAATTTTTCTCAACACCAGGTCCCCATCGTGAAATTCTCTGGG
261 CTAAAATCCTTTTGTAGAGGAAGAATTTTTCTCAACACCAGGTCCCCATCGTGAAATTCTCTGGG
15128150 TCGGACTTTCTTGTTGTAGGCTCGCATCATTCTTTTCTAGTACATCTGACCATGCTGAATAGCCT
326 TCGGACTTTCTTGTTGTAGGCTCGCATCATTCTTTTCTAGTACATCTGACCATGCTGAATAGCCT
* * ** *
15128215 TTAGCCTTTTTCCCTCTATCAAGTTCAACTGATCGTATCGAGATTGAATTCATTCTACTTTATCC
391 TTAGCCTCTTTCCCTCTATCAAGTTCAACTGATCGTATCGAGATTAAACCCATTCTACTTCATCC
*
15128280 AATTGTAGCTCAGTCAAAACCCGAAGAGAAGGAATTTCAACTTCGATGGGCAAGACTGCCTCCAT
456 AATTGTAGCTCAGACAAAACCCGAAGAGAAGGAATTTCAACTTCGATGGGCAAGACTGCCTCCAT
*
15128345 GCCATAAACTAAGGAGAAAGGCGTTGCCCCGGTGGAGGTCCTGGTTGACGTTCGATAAGTAAGGA
521 GCCATAAACTAAGGAGAAAGGCGTTGCCCCGGTGGAGGTCCTGGTTGACGTTCGATAAGCAAGGA
* *
15128410 GGGCAAACGGTAATTTTTTGTGCCAGTCCCTGTAAGTCTCAGTCATCTTCCCTACAATCTTCTTT
586 GGGCAAACGGTAATTTATCGTGCCAGTCCCTGTAAGTCTCAGTCATCTTCCCTACAATCTTCTTT
* *
15128475 ATATTTTTATTTGCCACTTCTACTGGACCATTCATTTTCGGGCGATACGGCGACGAATTGTGATG
651 ATATTTTTATTGGCCACTTCTACTGCACCATTCATTTTCGGGCGATACGGCGACGAATTGTGATG
*
15128540 TCTGATCTTGAATTGACTGCAGACCTCTGCTATTGAGCTGTTGTTCA
716 TCTGATCTTGAATTGACTGCAGACCTCTGCTATTGAGCTATTGTTCA
15128587 GTTTTCAACTCAAATCCCCTTTGGTCTTAAGGTGCCCTTTACGGGTTTTCACCCTAGCCTCTTTT
1 GTTTTCAACTCAAATCCCCTTTGGTCTTAAGGTGCCCTTTACGGGTTTTCACCCTAGCCTCTTTT
15128652 TTTTTGGAATCAAAGCGCCATTTGCGGGTTTTCACCTTGGTTCCTTCCCTTCTTCAAGTAAAGTA
66 TTTTTGGAATCAAAGCGCCATTTGCGGGTTTTCACCTTGGTTCCTTCCCTTCTTCAAGTAAAGTA
* *
15128717 CCTCTTCACCGAATCTGAATTTACCGGATTAGGCAAGTTTTTTCCATCCATTTCAGCCAGGATCA
131 CCTCTTCACCGAATCTGAATTTACCGGATTAGGCAAGTTTCTTCCATCCATTTCAGCCAAGATCA
**
15128782 AGGCTCATCCAGAAAAGGTCTTTTTTACAACATAAGGACCCTCCCAATTCGGCATCCATTTCCCC
196 AGGCTCATCCAGAAAAGACCTTTTTTACAACATAAGGACCCTCCCAATTCGGCATCCATTTCCCC
15128847 CTAAAATCCTTTTGTAGAGGAAGAATTTTTCTCAACACCAGGTCCCCATCGTGAAATTCTCTGGG
261 CTAAAATCCTTTTGTAGAGGAAGAATTTTTCTCAACACCAGGTCCCCATCGTGAAATTCTCTGGG
*
15128912 TCGGACTTTCTTGTTGTAGGCTCGCATCATTCTTTTCTGGTACATCTGACCATGCTGAATAGCCT
326 TCGGACTTTCTTGTTGTAGGCTCGCATCATTCTTTTCTAGTACATCTGACCATGCTGAATAGCCT
* *
15128977 TTAGCCTCTTTCCGTCTATCAAGTTCAACTGATCGTATCGAGATTAAACCCATTCTGCTTCATCC
391 TTAGCCTCTTTCCCTCTATCAAGTTCAACTGATCGTATCGAGATTAAACCCATTCTACTTCATCC
* *
15129042 AATTGTAGCTCAGACAAAACCCGGAGAGAAGGGATTTCAACTTCGATGGGCAAGACTGCCTCCAT
456 AATTGTAGCTCAGACAAAACCCGAAGAGAAGGAATTTCAACTTCGATGGGCAAGACTGCCTCCAT
15129107 GCCATAAACTAAGGAGAAAGGCGTTGCCCCGGTGGAGGTCCTGGTTGACGTTCGATAAGCAAGGA
521 GCCATAAACTAAGGAGAAAGGCGTTGCCCCGGTGGAGGTCCTGGTTGACGTTCGATAAGCAAGGA
15129172 GGGCAAACGGTAATTTATCGTGCCAGTCCCTGTAAGTCTCAGTCATCTTCCCTACAATCTTCTTT
586 GGGCAAACGGTAATTTATCGTGCCAGTCCCTGTAAGTCTCAGTCATCTTCCCTACAATCTTCTTT
*
15129237 ATATTTTTATTGGCCGCTTCTACTGCACCATTCATTTTCGGGCGATACGGCGACGAATTGTGATG
651 ATATTTTTATTGGCCACTTCTACTGCACCATTCATTTTCGGGCGATACGGCGACGAATTGTGATG
15129302 TCTGATCTTGAATTGACTGCAGACCTCTGCTATTGAGCTATTGTTCA
716 TCTGATCTTGAATTGACTGCAGACCTCTGCTATTGAGCTATTGTTCA
15129349 AATTCAACGC
Statistics
Matches: 737, Mismatches: 25, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
762 737 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (762 bp):
GTTTTCAACTCAAATCCCCTTTGGTCTTAAGGTGCCCTTTACGGGTTTTCACCCTAGCCTCTTTT
TTTTTGGAATCAAAGCGCCATTTGCGGGTTTTCACCTTGGTTCCTTCCCTTCTTCAAGTAAAGTA
CCTCTTCACCGAATCTGAATTTACCGGATTAGGCAAGTTTCTTCCATCCATTTCAGCCAAGATCA
AGGCTCATCCAGAAAAGACCTTTTTTACAACATAAGGACCCTCCCAATTCGGCATCCATTTCCCC
CTAAAATCCTTTTGTAGAGGAAGAATTTTTCTCAACACCAGGTCCCCATCGTGAAATTCTCTGGG
TCGGACTTTCTTGTTGTAGGCTCGCATCATTCTTTTCTAGTACATCTGACCATGCTGAATAGCCT
TTAGCCTCTTTCCCTCTATCAAGTTCAACTGATCGTATCGAGATTAAACCCATTCTACTTCATCC
AATTGTAGCTCAGACAAAACCCGAAGAGAAGGAATTTCAACTTCGATGGGCAAGACTGCCTCCAT
GCCATAAACTAAGGAGAAAGGCGTTGCCCCGGTGGAGGTCCTGGTTGACGTTCGATAAGCAAGGA
GGGCAAACGGTAATTTATCGTGCCAGTCCCTGTAAGTCTCAGTCATCTTCCCTACAATCTTCTTT
ATATTTTTATTGGCCACTTCTACTGCACCATTCATTTTCGGGCGATACGGCGACGAATTGTGATG
TCTGATCTTGAATTGACTGCAGACCTCTGCTATTGAGCTATTGTTCA
Found at i:15137317 original size:20 final size:20
Alignment explanation
Indices: 15137292--15137330 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15137282 TACTTTCTTC
15137292 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
15137312 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
15137331 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:15144201 original size:20 final size:21
Alignment explanation
Indices: 15144159--15144202 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
15144149 AACATCTTTC
**
15144159 TTTTATCTTTTATTTACTTAA
1 TTTTATCTTTTATTTACCAAA
15144180 TTTT-TCTTTTATTTACCAAA
1 TTTTATCTTTTATTTACCAAA
15144200 TTT
1 TTT
15144203 CTACTTTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTATCTTTTATTTACCAAA
Found at i:15150110 original size:26 final size:26
Alignment explanation
Indices: 15150080--15150137 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
15150070 AGCTCATCAA
15150080 ACCAAACATAAAATTCAAAAGCACAT
1 ACCAAACATAAAATTCAAAAGCACAT
15150106 ACCAAACATAAAATTCAAAAGCACAT
1 ACCAAACATAAAATTCAAAAGCACAT
15150132 ACCAAA
1 ACCAAA
15150138 TCAACCATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.59, C:0.24, G:0.03, T:0.14
Consensus pattern (26 bp):
ACCAAACATAAAATTCAAAAGCACAT
Found at i:15151238 original size:19 final size:20
Alignment explanation
Indices: 15151201--15151238 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15151191 CTTTCTTTTA
15151201 TCTTTTATATACTTAAATTT
1 TCTTTTATATACTTAAATTT
*
15151221 TCTTTTATTTAC-TAAATT
1 TCTTTTATATACTTAAATT
15151239 ACTACTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
TCTTTTATATACTTAAATTT
Found at i:15158379 original size:25 final size:24
Alignment explanation
Indices: 15158322--15158384 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 24
15158312 TCTGAGCGTG
15158322 CCGTATATAGCTCTTTGTGAGCTTA
1 CCGT-TATAGCTCTTTGTGAGCTTA
* *
15158347 TCGATTATAGCCTCTTTGTGAGCTTC
1 CCG-TTATAG-CTCTTTGTGAGCTTA
*
15158373 CCGTTATTGCTC
1 CCGTTATAGCTC
15158385 ACTTGAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
24 3 0.09
25 12 0.38
26 17 0.53
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (24 bp):
CCGTTATAGCTCTTTGTGAGCTTA
Found at i:15160710 original size:28 final size:28
Alignment explanation
Indices: 15160657--15160710 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
15160647 CTCTTTCCTT
* *
15160657 TTGTCCTAGCGGACTTACATTGTGTTTA
1 TTGTCCCAGCGGACTTACATTCTGTTTA
15160685 TTGTCCCAGCGGACTT-CATCTCTGTT
1 TTGTCCCAGCGGACTTACAT-TCTGTT
15160711 CCGTTTTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (28 bp):
TTGTCCCAGCGGACTTACATTCTGTTTA
Found at i:15179402 original size:34 final size:34
Alignment explanation
Indices: 15179314--15179410 Score: 108
Period size: 34 Copynumber: 2.9 Consensus size: 34
15179304 GGACCTCTCG
* * *
15179314 TGTTTATTGTCCCGACAGACTTA-CTTTATTCCG
1 TGTTTATTGTCCTGACAGACTTATCTCTATTCCA
* * *
15179347 TATTTATTATCCTTGA-GGACTTATCTCTATTCCA
1 TGTTTATTGTCC-TGACAGACTTATCTCTATTCCA
*
15179381 TGTTTACTGTCCTGACAGACTTATCTCTAT
1 TGTTTATTGTCCTGACAGACTTATCTCTAT
15179411 GGATGCTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
33 19 0.37
34 32 0.63
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44
Consensus pattern (34 bp):
TGTTTATTGTCCTGACAGACTTATCTCTATTCCA
Found at i:15182432 original size:33 final size:32
Alignment explanation
Indices: 15182395--15182477 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 32
15182385 ATTGTCATGG
* *
15182395 CCCAGCCATGGTCTTACATTCGTACA-GCCATAA
1 CCCAGCTATGGTCTTACATTAG-A-ATGCCATAA
*
15182428 CCCAGTTATGGTCTTATCATTAGAATGCCATAA
1 CCCAGCTATGGTCTTA-CATTAGAATGCCATAA
*
15182461 CCCAGCTATAGTCTTAC
1 CCCAGCTATGGTCTTAC
15182478 TTATAAATAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
32 2 0.05
33 36 0.84
34 5 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (32 bp):
CCCAGCTATGGTCTTACATTAGAATGCCATAA
Found at i:15182568 original size:101 final size:101
Alignment explanation
Indices: 15182387--15182612 Score: 254
Period size: 101 Copynumber: 2.2 Consensus size: 101
15182377 ACACATGCAT
* * * ** ** * * * *
15182387 TGTCATGGCCCAGCCATGGTCTTACATTCGTACAGCCATAACCCAGTTATGGTCTTATCATTAGA
1 TGTCATGGTCCAACCATGGTCTTACGTTCAAAGTGTCATAACCCAATTATGCTCTTATCATTAAA
* *
15182452 ATGCCATAACCCAGCTATAGTCTTACTTATAAATAC
66 ATGCCATAACCCAGCTATAGTCTTACATATAAACAC
* * * *
15182488 TGTCATGGTCCAACCATTGTCTTACGTTCAAAGTGTCATAATCCAATTATGCTCTTTTTATTAAA
1 TGTCATGGTCCAACCATGGTCTTACGTTCAAAGTGTCATAACCCAATTATGCTCTTATCATTAAA
* * * * *
15182553 ATGTCATATCCCAGCTATGGTTTTACATATAAACAT
66 ATGCCATAACCCAGCTATAGTCTTACATATAAACAC
15182589 TGTCATGGTCCAACCATGGTCTTA
1 TGTCATGGTCCAACCATGGTCTTA
15182613 TTCGTCAATT
Statistics
Matches: 102, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (101 bp):
TGTCATGGTCCAACCATGGTCTTACGTTCAAAGTGTCATAACCCAATTATGCTCTTATCATTAAA
ATGCCATAACCCAGCTATAGTCTTACATATAAACAC
Found at i:15189992 original size:33 final size:33
Alignment explanation
Indices: 15189955--15190096 Score: 90
Period size: 33 Copynumber: 4.2 Consensus size: 33
15189945 AACCTAGTTG
*
15189955 TGGTCTTATCATCAAAATGTCATAGCCCAACTA
1 TGGTCTTATCATCAAAATGCCATAGCCCAACTA
* ** * *
15189988 TGGTCTTACTTAT-AAATACTATCATAGTCCAACCA
1 TGGTCTTA-TCATCAAA-A-TGCCATAGCCCAACTA
* * * **
15190023 TGGTCTTA-CATTCAAAGTGCCATAACTCAGTTA
1 TGGTCTTATCA-TCAAAATGCCATAGCCCAACTA
* * * **
15190056 TGGTCTTTTCATTAAAATGCCACAGCCCAGGTA
1 TGGTCTTATCATCAAAATGCCATAGCCCAACTA
15190089 TGGTCTTA
1 TGGTCTTA
15190097 CATATAGACA
Statistics
Matches: 81, Mismatches: 22, Indels: 12
0.70 0.19 0.10
Matches are distributed among these distances:
33 50 0.62
34 7 0.09
35 24 0.30
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (33 bp):
TGGTCTTATCATCAAAATGCCATAGCCCAACTA
Found at i:15190060 original size:101 final size:101
Alignment explanation
Indices: 15189921--15190131 Score: 255
Period size: 101 Copynumber: 2.1 Consensus size: 101
15189911 TCGCTCAAAG
** * * * *
15189921 ATGGTCTTACATTCGTAGTGTCATAACCTAGTTGTGGTCTTATCATCAAAATGTCATAGCCCAAC
1 ATGGTCTTACATTCAAAGTGCCATAACCTAGTTATGGTCTTATCATCAAAATGCCACAGCCCAAC
* *
15189986 TATGGTCTTACTTATAAATACTATC-ATAGTCCAACC
66 TATGGTCTTACATATAAACA-TATCTATAGTCCAACC
* * *
15190022 ATGGTCTTACATTCAAAGTGCCATAA-CTCAGTTATGGTCTTTTCATTAAAATGCCACAGCCCAG
1 ATGGTCTTACATTCAAAGTGCCATAACCT-AGTTATGGTCTTATCATCAAAATGCCACAGCCCAA
* * * *
15190086 GTATGGTCTTACATATAGACATTTCTATGGTCCAACC
65 CTATGGTCTTACATATAAACATATCTATAGTCCAACC
15190123 ATGGTCTTA
1 ATGGTCTTA
15190132 TCCGTCAATT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
100 5 0.05
101 88 0.95
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (101 bp):
ATGGTCTTACATTCAAAGTGCCATAACCTAGTTATGGTCTTATCATCAAAATGCCACAGCCCAAC
TATGGTCTTACATATAAACATATCTATAGTCCAACC
Found at i:15190844 original size:17 final size:18
Alignment explanation
Indices: 15190822--15190862 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
15190812 ACCTAGTTGT
*
15190822 AAAAATCTCAA-AAATAA
1 AAAAATATCAAGAAATAA
15190839 AAAAATATCAAGAAATAA
1 AAAAATATCAAGAAATAA
15190857 ACAAAA
1 A-AAAA
15190863 ATTGAACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 7 0.33
19 4 0.19
ACGTcount: A:0.73, C:0.10, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAATATCAAGAAATAA
Found at i:15200748 original size:142 final size:142
Alignment explanation
Indices: 15200492--15200771 Score: 497
Period size: 142 Copynumber: 2.0 Consensus size: 142
15200482 TTTTGGGTGG
* * *
15200492 AAGATATCTGCAAGTTTATGAATGATTTTTATTTGGACAATTTTACGGAGCAATAAAAACTACAC
1 AAGATATCTGCAAGTTTATGAATGATTTTTATTCGAACAATTTTACAGAGCAATAAAAACTACAC
* * * *
15200557 ATGAAGATTCAATTGGAGTTTTTTCAACTTGATGCTTATCAAAGCACAGAGTTGTAGAAAGCTAC
66 ATGAAGATTCAATTGGAGTATTTTCAACTTGATGATCATCAAAGCACAGAGTTGCAGAAAGCTAC
15200622 TACAGTTGCAGA
131 TACAGTTGCAGA
15200634 AAGATATCTGCAAGTTTATGAATGATTTTTATTCGAACAATTTTACAGAGCAATAAAAACTACAC
1 AAGATATCTGCAAGTTTATGAATGATTTTTATTCGAACAATTTTACAGAGCAATAAAAACTACAC
15200699 ATGAAGATTCAATTGGAGTATTTTCAACTTGATGATCATCAAAGCACAGAGTTGCAGAAAGCTAC
66 ATGAAGATTCAATTGGAGTATTTTCAACTTGATGATCATCAAAGCACAGAGTTGCAGAAAGCTAC
15200764 TACAGTTG
131 TACAGTTG
15200772 TTGAGTTGTG
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 131 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (142 bp):
AAGATATCTGCAAGTTTATGAATGATTTTTATTCGAACAATTTTACAGAGCAATAAAAACTACAC
ATGAAGATTCAATTGGAGTATTTTCAACTTGATGATCATCAAAGCACAGAGTTGCAGAAAGCTAC
TACAGTTGCAGA
Found at i:15201041 original size:40 final size:40
Alignment explanation
Indices: 15200945--15201142 Score: 202
Period size: 40 Copynumber: 5.0 Consensus size: 40
15200935 GAGCTATGAC
* * * * *
15200945 AAAAACGCCGCAAAAGGTCAAGCATTAGTGGCG-TTTCTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
* * * *
15200984 AAACAAACGTCGCTATAGGTCGAGCATTAGCGGCACTTTTTG
1 -AA-AAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
**
15201026 AAAAACGCCGCTATAGATTGAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
* * * * *
15201066 AAAAACGTCGCTATAGATCAAGCATTAACGACGCTTCTCG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
* *
15201106 AAAAATGCCACTATAGATCAAGCATTAGC-GCGCTTTT
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTT
15201143 CAAAAAGCAC
Statistics
Matches: 132, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.05
40 94 0.71
41 27 0.20
42 5 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
Found at i:15201297 original size:41 final size:40
Alignment explanation
Indices: 15201193--15201301 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 40
15201183 AGCTTTAGTG
* ** *
15201193 GCATTAGCGGCGCTTTTTTAAAAAACGCTGCAATAGATCGA
1 GCATTAGCGGCGC-TTTTTGAAAAACGCCACAATAGATCAA
* *
15201234 GCATTAGCGGCGCTATTTGAAAAACGCCACTATAGATCAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCACAATAGATCAA
* * *
15201274 GCATTAGAGGCACTTTTTGGAAAACGCC
1 GCATTAGCGGCGCTTTTTGAAAAACGCC
15201302 GCAAAAAAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
40 45 0.78
41 13 0.22
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCACAATAGATCAA
Found at i:15201378 original size:149 final size:145
Alignment explanation
Indices: 15201047--15201411 Score: 471
Period size: 149 Copynumber: 2.5 Consensus size: 145
15201037 TATAGATTGA
* * * * *
15201047 GCATTAGCGGCGCTTTTTGAAAAACGTCGCTATAGATCAAGCATTAACGACGCTTCTCGAAAAAT
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTT-TTGAAAAAC
* *
15201112 GCCACTATAGATCAAGCATTAGCGCGCTTTTCAAAAAGCACCGTAAAAAAGTTGAGCAAAACACG
65 GCCACTATAGATCAAGCATTAGCGCACTTTTCAAAAAGCACCGCAAAAAAGTTGAGCAAAACACG
15201177 TTGTTGAGCTTTAGTG
130 TTGTTGAGCTTTAGTG
* * * *
15201193 GCATTAGCGGCGCTTTTTTAAAAAACGCTGCAATAGATCGAGCATTAGCGGCGCTATTTGAAAAA
1 GCATTAGCGGCGC-TTTTTGAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCT-TTTGAAAAA
* ** *
15201258 CGCCACTATAGATCAAGCATTAGAGGCACTTTTTGGAAAA-CGCCGCAAAAAAGTTGAGCAAAAC
64 CGCCACTATAGATCAAGCATTAG-CGCAC-TTTTCAAAAAGCACCGCAAAAAAGTTGAGCAAAAC
*
15201322 GATGTTGTTGAGCTTTAGTG
127 -ACGTTGTTGAGCTTTAGTG
* * *
15201342 GCATTAGCGGCGCTTTTTCGAAAAATGCCGCTATAGATCTAGAATTAGCGGCGCTTTTTGGAAAA
1 GCATTAGCGGCGCTTTTT-GAAAAACGCCGCTATAGATCAAGCATTAGCGGCGC-TTTT-GAAAA
15201407 ACGCC
63 ACGCC
15201412 GCAAAAAAGT
Statistics
Matches: 189, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
146 13 0.07
147 63 0.33
148 31 0.16
149 71 0.38
150 11 0.06
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (145 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTGAAAAACG
CCACTATAGATCAAGCATTAGCGCACTTTTCAAAAAGCACCGCAAAAAAGTTGAGCAAAACACGT
TGTTGAGCTTTAGTG
Found at i:15201476 original size:104 final size:105
Alignment explanation
Indices: 15201234--15201510 Score: 325
Period size: 104 Copynumber: 2.6 Consensus size: 105
15201224 AATAGATCGA
* * * *
15201234 GCATTAGCGGCGCTATTTG-AAAAACGCCACTATAGATCAAGCATTAGAGGCACTTTTTGG-AAA
1 GCATTAGCGGCGCT-TTTGTAAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTGGAAAA
*
15201297 ACGCCGCAAAAAAGTTGAGCAAAACGATGTTGTTGAGCTTTAGTG
65 ACGCCGCAAAAAAGTTGAGCAAAACGA---T-TTGAGCTTTAGAG
* *
15201342 GCATTAGCGGCGCTTTT-TCGAAAAATGCCGCTATAGATCTAGAATTAGCGGCGCTTTTTGGAAA
1 GCATTAGCGGCGCTTTTGT--AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTGGAAA
*
15201406 AACGCCGCAAAAAAGTTGAGCAAAGC-A-TTGAGCTTTAGAG
64 AACGCCGCAAAAAAGTTGAGCAAAACGATTTGAGCTTTAGAG
* * * *
15201446 GCATTAGCGGCGCTTTTGTAAAAAACGCCGCAATAGATCGAGAATTAGCAGCG-TTGTT-GAAAA
1 GCATTAGCGGCGCTTTTGT-AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTGGAAAA
15201509 AC
65 AC
15201511 ACGCTATAGA
Statistics
Matches: 150, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
102 7 0.05
103 4 0.03
104 58 0.39
105 1 0.01
107 3 0.02
108 14 0.09
109 36 0.24
110 27 0.18
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (105 bp):
GCATTAGCGGCGCTTTTGTAAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTGGAAAAA
CGCCGCAAAAAAGTTGAGCAAAACGATTTGAGCTTTAGAG
Found at i:15201774 original size:21 final size:21
Alignment explanation
Indices: 15201725--15201775 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
15201715 TGTTTATTAT
15201725 TTTGGGG-TTAGAGTTTAGAG
1 TTTGGGGTTTAGAGTTTAGAG
**
15201745 TTTATGGTTTATG-GTTTAGAG
1 TTTGGGGTTTA-GAGTTTAGAG
15201766 TTTGGGGTTT
1 TTTGGGGTTT
15201776 GGGATTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 5 0.20
21 19 0.76
22 1 0.04
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (21 bp):
TTTGGGGTTTAGAGTTTAGAG
Found at i:15201783 original size:21 final size:20
Alignment explanation
Indices: 15201725--15201783 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
15201715 TGTTTATTAT
* *
15201725 TTTGGGGTTAGAGTTTAGAG
1 TTTGGGGTTTGGGTTTAGAG
** *
15201745 TTTATGGTTTATGGTTTAGAG
1 TTTGGGGTTT-GGGTTTAGAG
15201766 TTTGGGGTTTGGGATTTA
1 TTTGGGGTTTGGG-TTTA
15201784 TTATTTTATA
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.47
Consensus pattern (20 bp):
TTTGGGGTTTGGGTTTAGAG
Found at i:15201991 original size:14 final size:14
Alignment explanation
Indices: 15201974--15202138 Score: 68
Period size: 14 Copynumber: 11.6 Consensus size: 14
15201964 TAAGTTTATA
15201974 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* *
15201988 GTTTAAGGTTTATG
1 GTTTAGGGTTTAAG
* * *
15202002 ATTTAGTGTTTATG
1 GTTTAGGGTTTAAG
* *
15202016 ATTTAGGGTGT-AG
1 GTTTAGGGTTTAAG
*
15202029 GTTTATGGTTT-AG
1 GTTTAGGGTTTAAG
*** *
15202042 TGTTTATAATTTATGG
1 -GTTTAGGGTTTA-AG
* *
15202058 GTTATGGGGCTTAAG
1 GTT-TAGGGTTTAAG
*
15202073 GTTTAGGGTTTAAA
1 GTTTAGGGTTTAAG
** *
15202087 GTTTATAGTTTAGG
1 GTTTAGGGTTTAAG
*
15202101 GTTTAAGAGTTT-AG
1 GTTT-AGGGTTTAAG
*
15202115 GATTTATGGTTT-AG
1 G-TTTAGGGTTTAAG
15202129 TGTTTAGGGT
1 -GTTTAGGGT
15202139 CTAATTTTAA
Statistics
Matches: 112, Mismatches: 32, Indels: 14
0.71 0.20 0.09
Matches are distributed among these distances:
13 11 0.10
14 79 0.71
15 17 0.15
16 5 0.04
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:15202031 original size:34 final size:35
Alignment explanation
Indices: 15201993--15202059 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
15201983 TTAAGGTTTA
*
15201993 AGGTTTATGATTTAGTGTTTATGATTTA-GGGTGT
1 AGGTTTATGATTTAGTGTTTATAATTTATGGGTGT
*
15202027 AGGTTTATGGTTTAGTGTTTATAATTTATGGGT
1 AGGTTTATGATTTAGTGTTTATAATTTATGGGT
15202060 TATGGGGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (35 bp):
AGGTTTATGATTTAGTGTTTATAATTTATGGGTGT
Found at i:15202082 original size:7 final size:7
Alignment explanation
Indices: 15202072--15202138 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
15202062 TGGGGCTTAA
15202072 GGTTTAG
1 GGTTTAG
*
15202079 GGTTTAA
1 GGTTTAG
* *
15202086 AGTTTAT
1 GGTTTAG
*
15202093 AGTTTAG
1 GGTTTAG
15202100 GGTTTAAG
1 GGTTT-AG
*
15202108 AGTTTAG
1 GGTTTAG
* *
15202115 GATTTAT
1 GGTTTAG
15202122 GGTTTAG
1 GGTTTAG
*
15202129 TGTTTAG
1 GGTTTAG
15202136 GGT
1 GGT
15202139 CTAATTTTAA
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
7 40 0.87
8 6 0.13
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:15202113 original size:15 final size:15
Alignment explanation
Indices: 15202093--15202134 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
15202083 TAAAGTTTAT
15202093 AGTTTAGGGTTTAAG
1 AGTTTAGGGTTTAAG
* *
15202108 AGTTTAGGATTTATG
1 AGTTTAGGGTTTAAG
*
15202123 -GTTTAGTGTTTA
1 AGTTTAGGGTTTA
15202135 GGGTCTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48
Consensus pattern (15 bp):
AGTTTAGGGTTTAAG
Found at i:15202135 original size:21 final size:20
Alignment explanation
Indices: 15201967--15202136 Score: 97
Period size: 21 Copynumber: 8.1 Consensus size: 20
15201957 TAGGATGTAA
*
15201967 GTTTATAGTTTAGGGTTTAAG
1 GTTTATGGTTTAGGGTTT-AG
* * *
15201988 GTTTAAGGTTTATGATTTAG
1 GTTTATGGTTTAGGGTTTAG
* *
15202008 TGTTTATGATTTAGGGTGTAG
1 -GTTTATGGTTTAGGGTTTAG
* *
15202029 GTTTATGGTTTAGTGTTTATA
1 GTTTATGGTTTAGGGTTTA-G
* * *
15202050 ATTTATGGGTTATGGGGCTTAAG
1 GTTTAT-GGTT-TAGGG-TTTAG
* ** *
15202073 GTTTAGGGTTTAAAGTTTATA
1 GTTTATGGTTTAGGGTTTA-G
* *
15202094 GTTTAGGGTTTAAGAGTTTAG
1 GTTTATGGTTT-AGGGTTTAG
*
15202115 GATTTATGGTTTAGTGTTTAG
1 G-TTTATGGTTTAGGGTTTAG
15202136 G
1 G
15202137 GTCTAATTTT
Statistics
Matches: 112, Mismatches: 29, Indels: 16
0.71 0.18 0.10
Matches are distributed among these distances:
20 21 0.19
21 57 0.51
22 24 0.21
23 7 0.06
24 3 0.03
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (20 bp):
GTTTATGGTTTAGGGTTTAG
Found at i:15204657 original size:9 final size:9
Alignment explanation
Indices: 15204645--15204700 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
15204635 AAATATATAT
15204645 CATAACTTA
1 CATAACTTA
15204654 CATAACTTA
1 CATAACTTA
*
15204663 CATAA-ATA
1 CATAACTTA
* * *
15204671 TATATCATA
1 CATAACTTA
*
15204680 TCAAAACTTA
1 -CATAACTTA
15204690 CATAACTTA
1 CATAACTTA
15204699 CA
1 CA
15204701 GAATTTTAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 5 0.14
9 27 0.73
10 5 0.14
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
CATAACTTA
Found at i:15204766 original size:21 final size:21
Alignment explanation
Indices: 15204742--15204868 Score: 92
Period size: 21 Copynumber: 6.4 Consensus size: 21
15204732 TCTTAACTTA
15204742 ATAACTTATATATATCATATC
1 ATAACTTATATATATCATATC
15204763 ATAACTTATATA-A-C-TCA-C
1 ATAACTTATATATATCAT-ATC
* * *
15204781 ATAAC--ATACATAAC-T-TA
1 ATAACTTATATATATCATATC
*
15204798 ATAACTTATATATATCATAAC
1 ATAACTTATATATATCATATC
* * * * *
15204819 ATAACTCACATA-ACTTACATG
1 ATAACTTATATATA-TCATATC
15204840 ATAACTTATATATATCATATC
1 ATAACTTATATATATCATATC
15204861 ATAACTTA
1 ATAACTTA
15204869 CATAACTCAC
Statistics
Matches: 79, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
16 4 0.05
17 6 0.08
18 9 0.11
19 9 0.11
20 3 0.04
21 47 0.59
22 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (21 bp):
ATAACTTATATATATCATATC
Found at i:15204775 original size:9 final size:9
Alignment explanation
Indices: 15204762--15204929 Score: 101
Period size: 9 Copynumber: 18.0 Consensus size: 9
15204752 TATATCATAT
15204762 CATAACTTA
1 CATAACTTA
* *
15204771 TATAACTCA
1 CATAACTTA
*
15204780 CATAACATA
1 CATAACTTA
15204789 CATAACTTA
1 CATAACTTA
15204798 -ATAACTTA
1 CATAACTTA
* *
15204806 TATATATCATAA
1 CATA-A-C-TTA
*
15204818 CATAACTCA
1 CATAACTTA
15204827 CATAACTTA
1 CATAACTTA
15204836 CATGATAACTTA
1 C---ATAACTTA
* *
15204848 TATATATCATA
1 CATA-A-CTTA
15204859 TCATAACTTA
1 -CATAACTTA
*
15204869 CATAACTCA
1 CATAACTTA
15204878 CATAACTTA
1 CATAACTTA
15204887 CATAA--TA
1 CATAACTTA
*
15204894 CATAA-ATA
1 CATAACTTA
* * *
15204902 TATATCATA
1 CATAACTTA
15204911 TCATAACTTA
1 -CATAACTTA
15204921 CATAACTTA
1 CATAACTTA
15204930 ATTATACTTA
Statistics
Matches: 125, Mismatches: 21, Indels: 26
0.73 0.12 0.15
Matches are distributed among these distances:
7 7 0.06
8 13 0.10
9 71 0.57
10 12 0.10
11 6 0.05
12 16 0.13
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:15204828 original size:47 final size:46
Alignment explanation
Indices: 15204772--15204927 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 46
15204762 CATAACTTAT
*
15204772 ATAACTCACATAACATACATAACTTAATAACTTATATATATCATAAC
1 ATAACTCACATAAC-TACATAACTTAATAACTTATATATATCATATC
* *
15204819 ATAACTCACATAACT---T-ACATGATAACTTATATATATCATATC
1 ATAACTCACATAACTACATAACTTAATAACTTATATATATCATATC
* *
15204861 ATAACTTACATAACTCACATAACTTACATAATACATAAATATATATCATATC
1 ATAACTCACATAACT-ACATAACTTA-AT-A-AC-T-TATATATATCATATC
*
15204913 ATAACTTACATAACT
1 ATAACTCACATAACT
15204928 TAATTATACT
Statistics
Matches: 92, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
42 37 0.40
43 1 0.01
46 2 0.02
47 17 0.18
48 2 0.02
49 1 0.01
50 2 0.02
51 1 0.01
52 29 0.32
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (46 bp):
ATAACTCACATAACTACATAACTTAATAACTTATATATATCATATC
Found at i:15204850 original size:98 final size:93
Alignment explanation
Indices: 15204742--15204941 Score: 287
Period size: 98 Copynumber: 2.1 Consensus size: 93
15204732 TCTTAACTTA
*
15204742 ATAACTTATATATATCATATCATAACTTATATAACTCACATAACATACATAACTTA-ATAACTTA
1 ATAACTTATATATATCATATCATAACTTACATAACTCACATAACATACATAA--TACATAA---A
15204806 TATATATCATAACATAACTCACATAACTTACATG
61 TATATATCATAACATAACTCACATAACTTA-ATG
*
15204840 ATAACTTATATATATCATATCATAACTTACATAACTCACATAACTTACATAATACATAAATATAT
1 ATAACTTATATATATCATATCATAACTTACATAACTCACATAACATACATAATACATAAATATAT
* * *
15204905 ATCATATCATAACTTACATAACTTAATT
66 ATCATAACATAACTCACATAACTTAATG
15204933 AT-ACTTATA
1 ATAACTTATA
15204942 AATAAACAAC
Statistics
Matches: 96, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
92 7 0.07
93 4 0.04
94 29 0.30
96 2 0.02
97 4 0.04
98 50 0.52
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (93 bp):
ATAACTTATATATATCATATCATAACTTACATAACTCACATAACATACATAATACATAAATATAT
ATCATAACATAACTCACATAACTTAATG
Found at i:15206485 original size:13 final size:14
Alignment explanation
Indices: 15206469--15206497 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15206459 TTTTAAATAT
15206469 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
15206482 TTATAATGGTTTAA
1 TTATAATGGTTTAA
15206496 TT
1 TT
15206498 CGTCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:15207356 original size:43 final size:43
Alignment explanation
Indices: 15207309--15207465 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 43
15207299 TTTAGCGACG
* * *
15207309 TTTGTGATAAAAGCGCCGTTAAAGATCATGTTCTTTAACGGTA
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGTA
* * * *
15207352 TTTGTG---AAA---TCGCTAAAAGTCAT-TCTCTATAGCGGCA
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGT-TCTTTAGCGGTA
* * *
15207389 TTTGTGATAAAAGCGTCGCTAAAGGTCATGTTCTTTAGCGATG
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGTA
**
15207432 TTTGTGATAAAAGTACCGCTAAAGGTCATGTTCT
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCT
15207466 ATAATGGCAT
Statistics
Matches: 91, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
36 1 0.01
37 25 0.27
40 6 0.07
43 58 0.64
44 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGTA
Found at i:15208184 original size:5 final size:5
Alignment explanation
Indices: 15208174--15208202 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15208164 TTGGTGTGAA
15208174 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
15208203 AAAAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:15217301 original size:11 final size:11
Alignment explanation
Indices: 15217285--15217312 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
15217275 CAAAAATATA
15217285 ATAATTATTAT
1 ATAATTATTAT
15217296 ATAATTATTAT
1 ATAATTATTAT
15217307 ATAATT
1 ATAATT
15217313 TTCCCTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATAATTATTAT
Found at i:15219212 original size:27 final size:27
Alignment explanation
Indices: 15219143--15219350 Score: 229
Period size: 27 Copynumber: 7.7 Consensus size: 27
15219133 AGATATGTCA
* * *
15219143 GAAATGAAAGCCTTTATGGTGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* * *
15219170 GAAGAGAGAGCATTTGTGGCGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
*
15219197 GAAAAGAAAGCCTTTGTGGTGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* *
15219224 GAAATA-AGAGCCTTGGTGGCGAACCAT
1 GAAA-AGAAAGCCTTTGTGGCGAACCAT
**
15219251 GAAAAGAAAGCCTTTGTGGAAAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* * *
15219278 GAAAAGAAAGTCTTTATGGTGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* * *
15219305 GAAAAGAAATCCTTTGTGGCAAACAAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* *
15219332 GAAATGAAAACCTTTGTGG
1 GAAAAGAAAGCCTTTGTGG
15219351 AAAATCCTGG
Statistics
Matches: 150, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (27 bp):
GAAAAGAAAGCCTTTGTGGCGAACCAT
Found at i:15219324 original size:81 final size:81
Alignment explanation
Indices: 15219143--15219354 Score: 255
Period size: 81 Copynumber: 2.6 Consensus size: 81
15219133 AGATATGTCA
* * * * * * **
15219143 GAAATGAAAGCCTTTATGGTGAACCATGAAGAGAGAGCATTTGTGGCGAACCATGAAAAGAAAGC
1 GAAAAGAAAGCCTTTGTGGCGAACCATGAAAAGAAAGCCTTTGTGGAAAACCATGAAAAGAAAGC
*
15219208 CTTTGTGGTGAACCAT
66 CTTTATGGTGAACCAT
* *
15219224 GAAATA-AGAGCCTTGGTGGCGAACCATGAAAAGAAAGCCTTTGTGGAAAACCATGAAAAGAAAG
1 GAAA-AGAAAGCCTTTGTGGCGAACCATGAAAAGAAAGCCTTTGTGGAAAACCATGAAAAGAAAG
*
15219288 TCTTTATGGTGAACCAT
65 CCTTTATGGTGAACCAT
* * * * *
15219305 GAAAAGAAATCCTTTGTGGCAAACAATGAAATGAAAACCTTTGTGGAAAA
1 GAAAAGAAAGCCTTTGTGGCGAACCATGAAAAGAAAGCCTTTGTGGAAAA
15219355 TCCTGGAAGG
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 109 0.99
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (81 bp):
GAAAAGAAAGCCTTTGTGGCGAACCATGAAAAGAAAGCCTTTGTGGAAAACCATGAAAAGAAAGC
CTTTATGGTGAACCAT
Found at i:15219509 original size:27 final size:27
Alignment explanation
Indices: 15219479--15219530 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
15219469 AAAGGAACAA
* * *
15219479 TACTCATGGTGAACTTTAAAAGAATGG
1 TACTCATAGCGAACTCTAAAAGAATGG
*
15219506 TACTCATAGCGAACTCTAAAGGAAT
1 TACTCATAGCGAACTCTAAAAGAAT
15219531 TGTATACATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (27 bp):
TACTCATAGCGAACTCTAAAAGAATGG
Found at i:15221332 original size:5 final size:5
Alignment explanation
Indices: 15221319--15221356 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
15221309 AAATGAATTG
*
15221319 TATGG TATGA TATGA TATGA TATGA TATGA TATGA TAT
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TAT
15221357 AGTGGATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (5 bp):
TATGA
Found at i:15221655 original size:36 final size:37
Alignment explanation
Indices: 15221612--15221704 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 37
15221602 AACCTATTAA
*
15221612 GGCGTGTTATTGGTTGGATTGGCCCTTATAAACATTT
1 GGCGTGTTATTGGTTGGATTAGCCCTTATAAACATTT
* * * *
15221649 GG-GTGTTATTGGTTGTATTAGCTCTTATGAGCATTT
1 GGCGTGTTATTGGTTGGATTAGCCCTTATAAACATTT
*
15221685 GGCGTGTT-TCGGTTGGATTA
1 GGCGTGTTATTGGTTGGATTA
15221705 CTTGTGTACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 41 0.85
37 7 0.15
ACGTcount: A:0.16, C:0.11, G:0.30, T:0.43
Consensus pattern (37 bp):
GGCGTGTTATTGGTTGGATTAGCCCTTATAAACATTT
Found at i:15227961 original size:50 final size:50
Alignment explanation
Indices: 15227902--15228001 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
15227892 AAATAAAAAA
* * *
15227902 CCGGCCAGCATGCAAAATTGAAAAGATGTGGTGCCAAATATATAAAGTGT
1 CCGGCCAGCATGCAAAATAGAAAAGATATGGTGCCAAATATACAAAGTGT
* * **
15227952 CCGGTCAGCATGCGAAATAGGGAAGATATGGTGCCAAATATACAAAGTGT
1 CCGGCCAGCATGCAAAATAGAAAAGATATGGTGCCAAATATACAAAGTGT
15228002 GGAAGACTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (50 bp):
CCGGCCAGCATGCAAAATAGAAAAGATATGGTGCCAAATATACAAAGTGT
Found at i:15251935 original size:18 final size:18
Alignment explanation
Indices: 15251912--15251953 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
15251902 TAGTAGTTCG
15251912 TATTATGAATTTATTATT
1 TATTATGAATTTATTATT
15251930 TATTATGAATTTATTATT
1 TATTATGAATTTATTATT
15251948 TATTAT
1 TATTAT
15251954 AGGTCCAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTATGAATTTATTATT
Found at i:15254362 original size:21 final size:21
Alignment explanation
Indices: 15254337--15254381 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
15254327 TAAGTAATTG
*
15254337 TAAATTTTAAGAAAGGTCTTT
1 TAAATTTTAAGAAAGGTCCTT
15254358 TAAATTTTAAGAAAGGTCCTT
1 TAAATTTTAAGAAAGGTCCTT
15254379 TAA
1 TAA
15254382 GTAGATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (21 bp):
TAAATTTTAAGAAAGGTCCTT
Found at i:15265502 original size:6 final size:7
Alignment explanation
Indices: 15265468--15265499 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
15265458 TGGCAAGGAT
15265468 GGGGGAA
1 GGGGGAA
15265475 GGGGGAA
1 GGGGGAA
15265482 GGGGGAA
1 GGGGGAA
15265489 GGGGGAA
1 GGGGGAA
15265496 GGGG
1 GGGG
15265500 AAGAGGCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.75, T:0.00
Consensus pattern (7 bp):
GGGGGAA
Found at i:15267689 original size:26 final size:24
Alignment explanation
Indices: 15267636--15267689 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
15267626 AGTATCAAGT
*
15267636 TATTTTAATTATGATTTTTTAAAA
1 TATTTTAATTATGATTTTGTAAAA
*
15267660 -ATTTTAATTATTATGTTTGTAAACA
1 TATTTTAATTATGAT-TTTGTAAA-A
15267685 TATTT
1 TATTT
15267690 ATTAACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 1 0.04
26 4 0.16
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (24 bp):
TATTTTAATTATGATTTTGTAAAA
Found at i:15280222 original size:20 final size:20
Alignment explanation
Indices: 15280178--15280215 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15280168 GCTATGTGGC
* *
15280178 TAGGCTATGTGGAATACCCT
1 TAGGCTGTGTAGAATACCCT
15280198 TAGGCTGTGTAGAATACC
1 TAGGCTGTGTAGAATACC
15280216 TTCAGGCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (20 bp):
TAGGCTGTGTAGAATACCCT
Found at i:15280227 original size:20 final size:20
Alignment explanation
Indices: 15280189--15280227 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15280179 AGGCTATGTG
*
15280189 GAATACCCTTAGGCTGTGTA
1 GAATACCCTTAGGCCGTGTA
15280209 GAATA-CCTTCAGGCCGTGT
1 GAATACCCTT-AGGCCGTGT
15280228 GACATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (20 bp):
GAATACCCTTAGGCCGTGTA
Found at i:15281458 original size:21 final size:19
Alignment explanation
Indices: 15281434--15281476 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
15281424 GAAATTAAAG
15281434 TAAAACAAAAGAAAAAGGAAT
1 TAAAACAAAA-AAAAA-GAAT
* *
15281455 TAAAATAAAACAAAAGAAT
1 TAAAACAAAAAAAAAGAAT
15281474 TAA
1 TAA
15281477 TAAATGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.72, C:0.05, G:0.09, T:0.14
Consensus pattern (19 bp):
TAAAACAAAAAAAAAGAAT
Found at i:15283045 original size:23 final size:24
Alignment explanation
Indices: 15282997--15283043 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15282987 TGAGTATGTT
*
15282997 TGATTGTATTTTGAATAGGTTAAA
1 TGATTGTATTTTGAATAGCTTAAA
*
15283021 TGATTGGT-TTTTGAATTGCTTAA
1 TGATT-GTATTTTGAATAGCTTAA
15283044 TGCCCAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (24 bp):
TGATTGTATTTTGAATAGCTTAAA
Found at i:15283600 original size:29 final size:29
Alignment explanation
Indices: 15283555--15283613 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
15283545 TTTGAAAAGG
* *
15283555 TAAAAGTCCCTAGGTTTGCCGTCTACTAT
1 TAAAAGTCCCTAAGTTTGCCGTCCACTAT
*
15283584 TAAAAGTCCCTAAGTTTGTCGTCCACTAT
1 TAAAAGTCCCTAAGTTTGCCGTCCACTAT
15283613 T
1 T
15283614 TTCTTCTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (29 bp):
TAAAAGTCCCTAAGTTTGCCGTCCACTAT
Found at i:15299582 original size:37 final size:37
Alignment explanation
Indices: 15299532--15299609 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
15299522 ATCAAATCTA
15299532 CTTCTACACCATATATGTATGAGGGAGACAAACCGCT
1 CTTCTACACCATATATGTATGAGGGAGACAAACCGCT
* *
15299569 CTTCTACACCATATATGTATGAGTGAGACAAATCGCT
1 CTTCTACACCATATATGTATGAGGGAGACAAACCGCT
15299606 CTTC
1 CTTC
15299610 CATTTTATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (37 bp):
CTTCTACACCATATATGTATGAGGGAGACAAACCGCT
Found at i:15304046 original size:63 final size:63
Alignment explanation
Indices: 15303965--15304085 Score: 224
Period size: 63 Copynumber: 1.9 Consensus size: 63
15303955 TGTTAGGCTA
*
15303965 TGTAACTCACTGACTCTCATACAAAGGAACCTTCAGATGACACATGGCTGTGTCGCCAAACTG
1 TGTAACTCACTGACTCTCATACAAAGGAACCCTCAGATGACACATGGCTGTGTCGCCAAACTG
*
15304028 TGTAACTCACTGACTCTCATACAAAGGAACCCTCAGATGACACATGGTTGTGTCGCCA
1 TGTAACTCACTGACTCTCATACAAAGGAACCCTCAGATGACACATGGCTGTGTCGCCA
15304086 GGCCATGTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (63 bp):
TGTAACTCACTGACTCTCATACAAAGGAACCCTCAGATGACACATGGCTGTGTCGCCAAACTG
Found at i:15307127 original size:16 final size:16
Alignment explanation
Indices: 15307106--15307137 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15307096 GTTTTATTGC
*
15307106 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
15307122 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
15307138 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:15307423 original size:51 final size:52
Alignment explanation
Indices: 15307359--15307502 Score: 168
Period size: 51 Copynumber: 2.8 Consensus size: 52
15307349 GATACCGGTT
* *
15307359 CACAGAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCAGCTATCCGATA
* * * * *
15307410 CACGTAGTAGCCTGCATATAGTACTACACACGTGATCGA--AGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATCAGCTATCCGATA
* *
15307461 CGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC-ATCA
15307503 TTCTGGTAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
50 2 0.03
51 70 0.93
52 2 0.03
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (52 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCAGCTATCCGATA
Found at i:15307792 original size:17 final size:16
Alignment explanation
Indices: 15307760--15307790 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15307750 CAATCTAGTC
15307760 GAAAAATCACATTTTG
1 GAAAAATCACATTTTG
*
15307776 GAAAAATTACATTTT
1 GAAAAATCACATTTT
15307791 TGCCCCTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (16 bp):
GAAAAATCACATTTTG
Found at i:15311370 original size:15 final size:16
Alignment explanation
Indices: 15311342--15311371 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15311332 GTTGGACTAA
15311342 ATTGAATGTGAGTTAT
1 ATTGAATGTGAGTTAT
15311358 ATTGAAT-TGAGTTA
1 ATTGAATGTGAGTTA
15311372 ATTCATTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.43
Consensus pattern (16 bp):
ATTGAATGTGAGTTAT
Found at i:15312136 original size:16 final size:16
Alignment explanation
Indices: 15312097--15312137 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
15312087 TCTTTTTATG
*
15312097 ATTAAAACTAATTGTC
1 ATTAAAATTAATTGTC
*
15312113 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTC
15312129 ATTAAAATT
1 ATTAAAATT
15312138 CTATCAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (16 bp):
ATTAAAATTAATTGTC
Found at i:15313645 original size:25 final size:26
Alignment explanation
Indices: 15313613--15313676 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 26
15313603 TTTAAACTAA
*
15313613 CCAG-AATACAGATTGAACATACAAT
1 CCAGAAATACAGATTAAACATACAAT
*
15313638 CCA-AAATACAAATTAAACATACAAT
1 CCAGAAATACAGATTAAACATACAAT
15313663 CCAGAAA-ACAGATT
1 CCAGAAATACAGATT
15313677 CCAAAATTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.53, C:0.20, G:0.08, T:0.19
Consensus pattern (26 bp):
CCAGAAATACAGATTAAACATACAAT
Found at i:15315488 original size:9 final size:9
Alignment explanation
Indices: 15315474--15315503 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
15315464 CCATCGATTT
15315474 TATATTGTC
1 TATATTGTC
15315483 TATATTGTC
1 TATATTGTC
15315492 TATATTGTC
1 TATATTGTC
15315501 TAT
1 TAT
15315504 TTACCGCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (9 bp):
TATATTGTC
Found at i:15315762 original size:45 final size:45
Alignment explanation
Indices: 15315693--15315806 Score: 122
Period size: 45 Copynumber: 2.5 Consensus size: 45
15315683 AAACTTAGTG
* * * * *
15315693 AGACCACAGCTAAAAGTTGTTATGGCATAAGGA-CAACAATGAGTA
1 AGACCATAGCTAAAAGATGCTATGGCATAAGGACCAA-AATCAATA
* * *
15315738 AGACCATAGCAAAAAGATGCTATGGCATCATGACCAAAATCAATA
1 AGACCATAGCTAAAAGATGCTATGGCATAAGGACCAAAATCAATA
* *
15315783 AGACCATGGCTAAAAGACGCTATG
1 AGACCATAGCTAAAAGATGCTATG
15315807 ACATCATGGT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 54 0.95
46 3 0.05
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (45 bp):
AGACCATAGCTAAAAGATGCTATGGCATAAGGACCAAAATCAATA
Found at i:15316077 original size:56 final size:57
Alignment explanation
Indices: 15315968--15316093 Score: 193
Period size: 56 Copynumber: 2.2 Consensus size: 57
15315958 GTTATATTTT
* * *
15315968 GTAAGACCATAACTGAAAGATGTTGTGACAACAAGAGATGATTTGACAGTAAAACGA
1 GTAAGACCATAGCTAAAAGATGTTGTGACAACAAGAGATGATTTGACAATAAAACGA
*
15316025 GTAAGACCATAGCTAAAAGATGTATG-G-CAACAAGAGATGATTTGATAATAAAACGA
1 GTAAGACCATAGCTAAAAGATGT-TGTGACAACAAGAGATGATTTGACAATAAAACGA
15316081 GTAAGACCATAGC
1 GTAAGACCATAGC
15316094 ATCTTTCAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
56 40 0.62
57 22 0.34
58 2 0.03
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (57 bp):
GTAAGACCATAGCTAAAAGATGTTGTGACAACAAGAGATGATTTGACAATAAAACGA
Found at i:15325899 original size:16 final size:16
Alignment explanation
Indices: 15325874--15325904 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15325864 TGATATATGT
*
15325874 TTGTTTGAATGATAAG
1 TTGTTGGAATGATAAG
15325890 TTGTTGGAATGATAA
1 TTGTTGGAATGATAA
15325905 AATTTATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (16 bp):
TTGTTGGAATGATAAG
Found at i:15328790 original size:37 final size:37
Alignment explanation
Indices: 15328733--15328897 Score: 165
Period size: 37 Copynumber: 4.2 Consensus size: 37
15328723 TATGATCACT
*
15328733 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCAAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
*
15328768 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCC-AC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
15328804 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A--AC
* *
15328850 TTATCACTTTGTCTCTTGATCAGATAAGTATAGACGAAGC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAG-CCAA-C
15328890 TATCACTT
1 TATCACTT
15328898 ATCACTTTTC
Statistics
Matches: 111, Mismatches: 5, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
35 6 0.05
36 6 0.05
37 52 0.47
39 9 0.08
40 1 0.01
41 1 0.01
42 1 0.01
46 34 0.31
47 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
Found at i:15328868 original size:46 final size:46
Alignment explanation
Indices: 15328801--15329949 Score: 1983
Period size: 46 Copynumber: 24.6 Consensus size: 46
15328791 TAAGTGTAGC
* * * **
15328801 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * *
15328847 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGACGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
15328893 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
15328945 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
15328997 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329043 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329089 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329135 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329181 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329227 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329273 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329319 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329365 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329411 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329457 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329503 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329549 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329595 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329641 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329687 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329733 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329779 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329825 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * ** *
15329871 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
15329923 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
15329950 AGTACTCAAA
Statistics
Matches: 1071, Mismatches: 19, Indels: 26
0.96 0.02 0.02
Matches are distributed among these distances:
46 934 0.87
47 3 0.00
48 1 0.00
50 1 0.00
51 3 0.00
52 129 0.12
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:15340775 original size:20 final size:20
Alignment explanation
Indices: 15340750--15340852 Score: 80
Period size: 20 Copynumber: 5.2 Consensus size: 20
15340740 ACTTTGGCCC
15340750 CCCCTGAATGCACATACGTG
1 CCCCTGAATGCACATACGTG
* * * ** *
15340770 CCCCTGATTGTACTTTGGTA
1 CCCCTGAATGCACATACGTG
*
15340790 CCCCTGAATGCACATGCGTG
1 CCCCTGAATGCACATACGTG
* ** * ** *
15340810 CCCCTGATTATACTTTGGTA
1 CCCCTGAATGCACATACGTG
15340830 CCCCTGAATGCACATACGTG
1 CCCCTGAATGCACATACGTG
15340850 CCC
1 CCC
15340853 TATTTGTACT
Statistics
Matches: 57, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.20, C:0.33, G:0.19, T:0.27
Consensus pattern (20 bp):
CCCCTGAATGCACATACGTG
Found at i:15340811 original size:81 final size:80
Alignment explanation
Indices: 15340673--15340877 Score: 261
Period size: 81 Copynumber: 2.6 Consensus size: 80
15340663 AATTATTATA
* * * * * *
15340673 TGAATGCACATATGTGCCCCTGATTGTACTTCGATACCCTTGAATGCACATATGTGCCATTGATT
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGCACATACGTGCCACTGATT
* *
15340738 GTACTTTGGCCCCCCC
66 ATACTTTGG-CACCCC
* *
15340754 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGCACATGCGTGCCCCTGATT
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGCACATACGTGCCACTGATT
*
15340819 ATACTTTGGTACCCC
66 ATACTTTGGCACCCC
**
15340834 TGAATGCACATACGTG-CCCT-ATTTGTACTTTGGTAGTCCTGAAT
1 TGAATGCACATACGTGCCCCTGA-TTGTACTTTGGTACCCCTGAAT
15340878 TAAATAATAC
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 24 0.22
80 20 0.18
81 65 0.59
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGCACATACGTGCCACTGATT
ATACTTTGGCACCCC
Found at i:15340875 original size:39 final size:40
Alignment explanation
Indices: 15340673--15340877 Score: 261
Period size: 40 Copynumber: 5.1 Consensus size: 40
15340663 AATTATTATA
* * * *
15340673 TGAATGCACATATGTGCCCCTGATTGTACTTCGATACCCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCC
* ** **
15340713 TGAATGCACATATGTGCCATTGATTGTACTTTGGCCCCCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGG-TACCCC
15340754 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCC
* *
15340794 TGAATGCACATGCGTGCCCCTGATTATACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCC
**
15340834 TGAATGCACATACGTG-CCCT-ATTTGTACTTTGGTAGTCC
1 TGAATGCACATACGTGCCCCTGA-TTGTACTTTGGTACCCC
15340873 TGAAT
1 TGAAT
15340878 TAAATAATAC
Statistics
Matches: 145, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 23 0.16
40 87 0.60
41 34 0.23
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTTGGTACCCC
Found at i:15342134 original size:17 final size:18
Alignment explanation
Indices: 15342102--15342136 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15342092 CTAAGATAAG
15342102 TAAACATAAGAATAAAAA
1 TAAACATAAGAATAAAAA
*
15342120 TAAACA-AATAATAAAAA
1 TAAACATAAGAATAAAAA
15342137 CATAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (18 bp):
TAAACATAAGAATAAAAA
Found at i:15344773 original size:27 final size:27
Alignment explanation
Indices: 15344742--15344919 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15344732 TAAATTGTAC
15344742 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15344769 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15344795 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15344823 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15344851 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15344878 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15344905 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15344920 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15344856 original size:82 final size:81
Alignment explanation
Indices: 15344743--15344898 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15344733 AAATTGTACA
* *
15344743 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15344807 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15344824 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15344889 TGCGAGTTGA
65 TGCGAATTGA
15344899 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15344910 original size:82 final size:81
Alignment explanation
Indices: 15344739--15344919 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15344729 GATTAAATTG
* *
15344739 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15344804 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15344820 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15344884 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15344902 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15344920 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15352836 original size:27 final size:27
Alignment explanation
Indices: 15352805--15352982 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15352795 TAAATTGTAC
15352805 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15352832 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15352858 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15352886 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15352914 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15352941 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15352968 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15352983 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15352919 original size:82 final size:81
Alignment explanation
Indices: 15352806--15352961 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15352796 AAATTGTACA
* *
15352806 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15352870 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15352887 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15352952 TGCGAGTTGA
65 TGCGAATTGA
15352962 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15352973 original size:82 final size:81
Alignment explanation
Indices: 15352802--15352982 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15352792 GATTAAATTG
* *
15352802 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15352867 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15352883 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15352947 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15352965 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15352983 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15354840 original size:16 final size:17
Alignment explanation
Indices: 15354819--15354851 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15354809 TGAAGAAAAT
15354819 GTCCAAGTGT-ATATAG
1 GTCCAAGTGTAATATAG
*
15354835 GTCCAATTGTAATATAG
1 GTCCAAGTGTAATATAG
15354852 TTTTTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (17 bp):
GTCCAAGTGTAATATAG
Found at i:15357157 original size:20 final size:20
Alignment explanation
Indices: 15357129--15357173 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15357119 TAATTAGAGC
*
15357129 TAAAGATTAAA-TTCATAAAA
1 TAAAGATTAAACTAC-TAAAA
*
15357149 TAAATATTAAACTACTAAAA
1 TAAAGATTAAACTACTAAAA
15357169 TAAAG
1 TAAAG
15357174 TTGACAAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (20 bp):
TAAAGATTAAACTACTAAAA
Found at i:15358701 original size:20 final size:20
Alignment explanation
Indices: 15358676--15358736 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
15358666 ACTTGTACGG
15358676 GATTGCACTTCGATGCCTCT
1 GATTGCACTTCGATGCCTCT
* *
15358696 GATTGCACATTTG-TGCCTTT
1 GATTGCAC-TTCGATGCCTCT
* *
15358716 GTTTGCATTTCGATGCCTCT
1 GATTGCACTTCGATGCCTCT
15358736 G
1 G
15358737 TTAAGCATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.13, C:0.25, G:0.21, T:0.41
Consensus pattern (20 bp):
GATTGCACTTCGATGCCTCT
Found at i:15361604 original size:11 final size:11
Alignment explanation
Indices: 15361584--15361618 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
15361574 AGCTATCCTA
15361584 GGTA-TCTAAC
1 GGTATTCTAAC
15361594 GGTATTCTAAC
1 GGTATTCTAAC
15361605 GGTATTCTAAC
1 GGTATTCTAAC
15361616 GGT
1 GGT
15361619 TCAACGAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 20 0.83
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (11 bp):
GGTATTCTAAC
Found at i:15375110 original size:23 final size:23
Alignment explanation
Indices: 15375086--15375136 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
15375076 GTAAATTAAT
*
15375086 TTTTTGTTA-AAAAAATTATCTA
1 TTTTTATTATAAAAAATTATCTA
*
15375108 TTTTTATTATAAAAAATTATC-C
1 TTTTTATTATAAAAAATTATCTA
15375130 TTTTTAT
1 TTTTTAT
15375137 GTTAGCATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTTTATTATAAAAAATTATCTA
Found at i:15375861 original size:124 final size:124
Alignment explanation
Indices: 15375641--15376080 Score: 731
Period size: 124 Copynumber: 3.5 Consensus size: 124
15375631 GATAAAATCA
* **
15375641 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGCCGCGCTCA-CGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGC-CATCGTGGACGCGCTTTTGCTACAG
15375705 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAACTTC
65 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAACTTC
* *
15375765 AAGCAGGATGCTTTATTAGAAGAATTTCTAAAATCGCGCCATCGTGGATGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCATCGTGGACGCGCTTTTGCTACAGT
15375830 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAACTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAACTTC
* *
15375889 AAGCAGGATGCTTTATTAGAAGAATTTCTAAAATCGCGCCATCGTGGATGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCATCGTGGACGCGCTTTTGCTACAGT
*
15375954 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGTAAATAGTAT-AAAAAACGATTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAAC--TTC
* * * *
15376014 AAGTAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCATCGTGGACGCGCTTTTGCTACAGT
15376079 AG
66 AG
15376081 CATGTTTGGG
Statistics
Matches: 301, Mismatches: 12, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
123 9 0.03
124 228 0.76
125 64 0.21
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (124 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCATCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAACTTC
Done.