Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 52 of 161
Found at i:16048501 original size:18 final size:20
Alignment explanation
Indices: 16048470--16048506 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
16048460 TATTTTTATT
16048470 TTATTTTATTTAT-ATGTAA
1 TTATTTTATTTATAATGTAA
16048489 TTATTTT-TTTATAATGTA
1 TTATTTTATTTATAATGTA
16048507 TATATTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (20 bp):
TTATTTTATTTATAATGTAA
Found at i:16048649 original size:16 final size:17
Alignment explanation
Indices: 16048620--16048659 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
16048610 TGTATTTTTT
* *
16048620 ATTACCTACTTTATAA-
1 ATTACATACATTATAAC
16048636 ATTACATACATTATAAC
1 ATTACATACATTATAAC
16048653 ATTACAT
1 ATTACAT
16048660 TATCTTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTACATACATTATAAC
Found at i:16056110 original size:4 final size:4
Alignment explanation
Indices: 16056101--16056132 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
16056091 TCTTCTTTTC
16056101 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
16056133 GTAGGTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:16063505 original size:18 final size:17
Alignment explanation
Indices: 16063469--16063511 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
16063459 GTGTGAATCC
*
16063469 AAACTAAAATATTAATT
1 AAACTAAAAAATTAATT
*
16063486 AAACTAAGAAAATTACTT
1 AAACTAA-AAAATTAATT
*
16063504 AACCTAAA
1 AAACTAAA
16063512 TTAACCTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (17 bp):
AAACTAAAAAATTAATT
Found at i:16066401 original size:16 final size:16
Alignment explanation
Indices: 16066380--16066412 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
16066370 AAAGAAAGAT
16066380 TGGTTTTCAAGAAAGG
1 TGGTTTTCAAGAAAGG
*
16066396 TGGTTTTCACGAAAGG
1 TGGTTTTCAAGAAAGG
16066412 T
1 T
16066413 AATATCCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.33
Consensus pattern (16 bp):
TGGTTTTCAAGAAAGG
Found at i:16068271 original size:46 final size:46
Alignment explanation
Indices: 16068151--16068293 Score: 178
Period size: 46 Copynumber: 3.1 Consensus size: 46
16068141 TAAACATGTA
* * * *
16068151 ATATTCTATTAAGCCTTTGTGGCACATTCTATACAGCCTTTGTGGC
1 ATATTCTGTTAAGCCTTTGTGGCATATTCTGTAAAGCCTTTGTGGC
* *
16068197 ATATACTGTTAAGCCTTTGTGGCATATTCTGTAAATCCTTTGTGGC
1 ATATTCTGTTAAGCCTTTGTGGCATATTCTGTAAAGCCTTTGTGGC
* ** * * *
16068243 ATGTTCTGTTAAGCCTTTGTGGTGTATTCTGTAAAGGCTCTGTAGC
1 ATATTCTGTTAAGCCTTTGTGGCATATTCTGTAAAGCCTTTGTGGC
16068289 ATATT
1 ATATT
16068294 TTGTAATGCC
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (46 bp):
ATATTCTGTTAAGCCTTTGTGGCATATTCTGTAAAGCCTTTGTGGC
Found at i:16068272 original size:23 final size:23
Alignment explanation
Indices: 16068151--16068293 Score: 153
Period size: 23 Copynumber: 6.2 Consensus size: 23
16068141 TAAACATGTA
*
16068151 ATATTCTATTAAGCCTTTGTGGC
1 ATATTCTGTTAAGCCTTTGTGGC
* *
16068174 ACATTCT-ATACAGCCTTTGTGGC
1 ATATTCTGTTA-AGCCTTTGTGGC
*
16068197 ATATACTGTTAAGCCTTTGTGGC
1 ATATTCTGTTAAGCCTTTGTGGC
* *
16068220 ATATTCTGTAAATCCTTTGTGGC
1 ATATTCTGTTAAGCCTTTGTGGC
* *
16068243 ATGTTCTGTTAAGCCTTTGTGGT
1 ATATTCTGTTAAGCCTTTGTGGC
* * * * *
16068266 GTATTCTGTAAAGGCTCTGTAGC
1 ATATTCTGTTAAGCCTTTGTGGC
16068289 ATATT
1 ATATT
16068294 TTGTAATGCC
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
22 2 0.02
23 94 0.96
24 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (23 bp):
ATATTCTGTTAAGCCTTTGTGGC
Found at i:16081278 original size:16 final size:16
Alignment explanation
Indices: 16081259--16081291 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
16081249 TAAAAATTCC
16081259 AAAAAAGAAAAAAGAAA
1 AAAAAAG-AAAAAGAAA
16081276 AAAAAAGAAAAAGAAA
1 AAAAAAGAAAAAGAAA
16081292 GTTGCAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAGAAA
Found at i:16081392 original size:54 final size:54
Alignment explanation
Indices: 16081310--16081417 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
16081300 ACCTTATTAG
*
16081310 AGAAACAATGTTGCTTCCCAATCATGCATTTACCATTGCTCCATCGAGCTTAAT
1 AGAAACAATGTTGCTTCCCAATCATGCATTTACCATTGCTCCACCGAGCTTAAT
16081364 AGAAACAATGTTGCTTCCCAATCATGCATTTACCATTGCTCCACCGAGCTTAAT
1 AGAAACAATGTTGCTTCCCAATCATGCATTTACCATTGCTCCACCGAGCTTAAT
16081418 TATCCTCAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (54 bp):
AGAAACAATGTTGCTTCCCAATCATGCATTTACCATTGCTCCACCGAGCTTAAT
Found at i:16086983 original size:34 final size:34
Alignment explanation
Indices: 16086938--16087004 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
16086928 GCTAGGTATG
* *
16086938 TATGGCCGAGTGTTGTACAAATGATGCGTTATTC
1 TATGGCCGAGTGTGGTACAAATGATGAGTTATTC
* *
16086972 TATGGCTGAGTGTGGTGCAAATGATGAGTTATT
1 TATGGCCGAGTGTGGTACAAATGATGAGTTATT
16087005 ATGTGGTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.10, G:0.30, T:0.36
Consensus pattern (34 bp):
TATGGCCGAGTGTGGTACAAATGATGAGTTATTC
Found at i:16102961 original size:13 final size:13
Alignment explanation
Indices: 16102945--16102978 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
16102935 ATGTGTAAAC
16102945 GAAATGGTAAGAT
1 GAAATGGTAAGAT
* *
16102958 GAAATGTTTAGAT
1 GAAATGGTAAGAT
16102971 GAAATGGT
1 GAAATGGT
16102979 TATACGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (13 bp):
GAAATGGTAAGAT
Found at i:16107232 original size:35 final size:36
Alignment explanation
Indices: 16107161--16107236 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
16107151 TGTGAAAGAG
* * *
16107161 AATATGTTGGTATGATATTCATGCCATGTGATAGTA
1 AATATGTGGGTATGATATTCATACCATGTGACAGTA
*
16107197 AATATGTGGGTATG-TTTTCATACCATG-GAACAGTA
1 AATATGTGGGTATGATATTCATACCATGTG-ACAGTA
16107232 AATAT
1 AATAT
16107237 ACAGTGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 1 0.03
35 21 0.60
36 13 0.37
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (36 bp):
AATATGTGGGTATGATATTCATACCATGTGACAGTA
Found at i:16107793 original size:27 final size:27
Alignment explanation
Indices: 16107755--16107825 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
16107745 TATGAATATG
* * *
16107755 TGACATGTTTGCTTAGTTGATGCATAA
1 TGACTTGTTTGCTTAGTCGATACATAA
16107782 TGACTTGTTTGCTTAGTCGATACATAA
1 TGACTTGTTTGCTTAGTCGATACATAA
*
16107809 TGACTTGTTTGCATAGT
1 TGACTTGTTTGCTTAGT
16107826 GGTTGTTCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (27 bp):
TGACTTGTTTGCTTAGTCGATACATAA
Found at i:16111436 original size:38 final size:38
Alignment explanation
Indices: 16111375--16111509 Score: 137
Period size: 38 Copynumber: 3.5 Consensus size: 38
16111365 TTACACCAGC
*
16111375 ACGAAGCCTGCTAGGCATC-AAGCCAGATGAACATTGGT
1 ACGAAGCCTGCTAGGC-TCAAAGCCAGATGAACACTGGT
* * ** * *
16111413 ACGAAGCCTACTAGGCTCAAAGCCCGATTGGTCACTAGC
1 ACGAAGCCTGCTAGGCTCAAAGCCAGA-TGAACACTGGT
* * * *
16111452 ATGAAGCTTGCTAGGCTCAAAGCCTGATAAACACTGGT
1 ACGAAGCCTGCTAGGCTCAAAGCCAGATGAACACTGGT
*
16111490 ACGAGGCCTGCTAGGCTCAA
1 ACGAAGCCTGCTAGGCTCAA
16111510 GGCCCTACAC
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
37 2 0.03
38 45 0.59
39 29 0.38
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19
Consensus pattern (38 bp):
ACGAAGCCTGCTAGGCTCAAAGCCAGATGAACACTGGT
Found at i:16111504 original size:77 final size:77
Alignment explanation
Indices: 16111372--16111514 Score: 198
Period size: 77 Copynumber: 1.9 Consensus size: 77
16111362 TCGTTACACC
* *
16111372 AGCACGAAGCCTGCTAGGCATCAAGCCAGATGAACATTGGTACGAAGCCTACTAGGCTCAAAGCC
1 AGCACGAAGCCTGCTAGGCATCAAGCCAGATAAACACTGGTACGAAGCCTACTAGGCTCAAAGCC
16111437 CGATTGGTCACT
66 CGATTGGTCACT
* * * * * *
16111449 AGCATGAAGCTTGCTAGGC-TCAAAGCCTGATAAACACTGGTACGAGGCCTGCTAGGCTCAAGGC
1 AGCACGAAGCCTGCTAGGCATC-AAGCCAGATAAACACTGGTACGAAGCCTACTAGGCTCAAAGC
16111513 CC
65 CC
16111515 TACACAATAC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 2 0.04
77 55 0.96
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.18
Consensus pattern (77 bp):
AGCACGAAGCCTGCTAGGCATCAAGCCAGATAAACACTGGTACGAAGCCTACTAGGCTCAAAGCC
CGATTGGTCACT
Found at i:16111555 original size:41 final size:41
Alignment explanation
Indices: 16111498--16111575 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
16111488 GTACGAGGCC
*
16111498 TGCTAGGCTCAAGGCCCTACACAATACACCGACATAAAGCT
1 TGCTAGGCTCAAGGCCCAACACAATACACCGACATAAAGCT
* *
16111539 TGCTAGG-TCCAAGGCCCAATACAATACACCGCCATAA
1 TGCTAGGCT-CAAGGCCCAACACAATACACCGACATAA
16111576 CAACTCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 1 0.03
41 32 0.97
ACGTcount: A:0.35, C:0.32, G:0.17, T:0.17
Consensus pattern (41 bp):
TGCTAGGCTCAAGGCCCAACACAATACACCGACATAAAGCT
Found at i:16121991 original size:30 final size:30
Alignment explanation
Indices: 16121950--16122204 Score: 164
Period size: 30 Copynumber: 8.5 Consensus size: 30
16121940 AACCAAAGTT
* * *
16121950 ATCCC-TTTCATAGTTCGATGGGCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGTCGAAGCC
* * *
16121979 ATCCCTTTTCATAATTTGATAGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGTCG-AAGCC
* *
16122009 ATCCCTTTTCATAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGTCG-AAGCC
* * *
16122039 ATCCCTTTTCATAATTTGATAG-CTGAAGCT
1 ATCCCTTTTCATAGTTCGATAGTC-GAAGCC
* *
16122069 ATCCTTTTTCATAGATT-GATAGCCGAAGCC
1 ATCCCTTTTCATAG-TTCGATAGTCGAAGCC
* * * **
16122099 ATCCCTTTTCATAAATT-AATAGTTGAAGTT
1 ATCCCTTTTCAT-AGTTCGATAGTCGAAGCC
* * * *
16122129 ATCTCTTTTCATAGTTCAATAGCCGAAACC
1 ATCCCTTTTCATAGTTCGATAGTCGAAGCC
* * * *
16122159 ATCCTTTTTCATAGTTCGATGGTAGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGTCG-AAGCC
*
16122189 ATCCCTTTTAATAGTT
1 ATCCCTTTTCATAGTT
16122205 GGCTGGTCGT
Statistics
Matches: 177, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
29 10 0.06
30 161 0.91
31 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAGTCGAAGCC
Found at i:16122027 original size:60 final size:61
Alignment explanation
Indices: 16121950--16122204 Score: 211
Period size: 60 Copynumber: 4.3 Consensus size: 61
16121940 AACCAAAGTT
* * * *
16121950 ATCCC-TTTCATAGTTCGATGGGCGAAGCTATCCCTTTTCATAATTTGATAGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGTAAGCC
* * * *
16122009 ATCCCTTTTCATAGTTCGATGGTCGTCA-CCATCCCTTTTCATAATTTGATAG-C-TGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCG-AAGCCATCCCTTTTCATAATTTGATAGTCGT-AAGCC
* * * * **
16122069 ATCCTTTTTCATAGATT-GATAGCCGAAGCCATCCCTTTTCATAAATTAATAGTTG-AAGTT
1 ATCCCTTTTCATAG-TTCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGTAAGCC
* * * * * * * * *
16122129 ATCTCTTTTCATAGTTCAATAGCCGAAACCATCCTTTTTCATAGTTCGATGGTAGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGTAAGCC
*
16122189 ATCCCTTTTAATAGTT
1 ATCCCTTTTCATAGTT
16122205 GGCTGGTCGT
Statistics
Matches: 157, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
58 1 0.01
59 10 0.06
60 142 0.90
61 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (61 bp):
ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGTAAGCC
Found at i:16122069 original size:90 final size:89
Alignment explanation
Indices: 16121950--16122258 Score: 252
Period size: 90 Copynumber: 3.5 Consensus size: 89
16121940 AACCAAAGTT
* * *
16121950 ATCCC-TTTCATAGTTCGATGGGCGAAGCTATCCCTTTTCATAATTTGATAGTCGTCACCATCCC
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTTGATAGTCGTCACCATCCC
16122014 TTTTCATAGTTCGATGGTCGTCACC
66 TTTTCATAGTT-GATGGTCGTCACC
* * * * *
16122039 ATCCCTTTTCATAATTTGATAGCTGAAGCTATCCTTTTTCATAGA-TTGATAGCCG-AAGCCATC
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATA-ATTTGATAGTCGTCA-CCATC
* * * * * **
16122102 CCTTTTCATAAATTAATAGTTG-AAGTT
64 CCTTTTCAT-AGTTGATGGTCGTCA-CC
* * * * * * * * * *
16122129 ATCTCTTTTCATAGTTCAATAGCCGAAACCATCCTTTTTCATAGTTCGATGGTAGTCACCATCCC
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTTGATAGTCGTCACCATCCC
* *
16122194 TTTTAATAGTTGGCTGGTCGTCACC
66 TTTTCATAGTT-GATGGTCGTCACC
* * *
16122219 -TTCCTTTACATAA-TCGATAGCCGAAGCTATTCCTTTTCAT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCAT
16122259 TCGTTGATGA
Statistics
Matches: 165, Mismatches: 46, Indels: 19
0.72 0.20 0.08
Matches are distributed among these distances:
88 22 0.13
89 19 0.12
90 118 0.72
91 6 0.04
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (89 bp):
ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTTGATAGTCGTCACCATCCC
TTTTCATAGTTGATGGTCGTCACC
Found at i:16122217 original size:30 final size:30
Alignment explanation
Indices: 16122156--16122218 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
16122146 AATAGCCGAA
* *
16122156 ACCATCCTTTTTCATAGTTCGATGGTAGTC
1 ACCATCCCTTTTAATAGTTCGATGGTAGTC
* * *
16122186 ACCATCCCTTTTAATAGTTGGCTGGTCGTC
1 ACCATCCCTTTTAATAGTTCGATGGTAGTC
16122216 ACC
1 ACC
16122219 TTCCTTTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (30 bp):
ACCATCCCTTTTAATAGTTCGATGGTAGTC
Found at i:16125552 original size:27 final size:27
Alignment explanation
Indices: 16125522--16125652 Score: 136
Period size: 27 Copynumber: 4.9 Consensus size: 27
16125512 AGTTAGTCCA
16125522 TTCAGAGTTCGCCACAAAGGCTATTCT
1 TTCAGAGTTCGCCACAAAGGCTATTCT
* *
16125549 TTCAGAGTTTGCCATAAAGGCTATTCT
1 TTCAGAGTTCGCCACAAAGGCTATTCT
* * *** *
16125576 TTCAAAGCTCGCCACAAATAATATTTT
1 TTCAGAGTTCGCCACAAAGGCTATTCT
* * * *
16125603 TTCAAAGTTCACCATAAAGACTATTCT
1 TTCAGAGTTCGCCACAAAGGCTATTCT
* *
16125630 TTCAGAGTTCGTCAAAAAGGCTA
1 TTCAGAGTTCGCCACAAAGGCTA
16125653 ACAAAATGCC
Statistics
Matches: 83, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (27 bp):
TTCAGAGTTCGCCACAAAGGCTATTCT
Found at i:16128500 original size:26 final size:26
Alignment explanation
Indices: 16128426--16128502 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
16128416 GCCAACACAC
*
16128426 CAATATTGCAGCAAAGCTGCCAATAA
1 CAATATTGCAGCAAAGCTGCCAGTAA
* *
16128452 TAGTATTGCAGCAAAGCTGCCAGTAA
1 CAATATTGCAGCAAAGCTGCCAGTAA
* *
16128478 CAATATCGCAGCAAAGCTACCAGTA
1 CAATATTGCAGCAAAGCTGCCAGTA
16128503 CAGTATATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.19
Consensus pattern (26 bp):
CAATATTGCAGCAAAGCTGCCAGTAA
Found at i:16134997 original size:17 final size:17
Alignment explanation
Indices: 16134975--16135009 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
16134965 TGGTACTTAG
16134975 TCCTTGTACTATAGCAT
1 TCCTTGTACTATAGCAT
16134992 TCCTTGTACTATAGCAT
1 TCCTTGTACTATAGCAT
16135009 T
1 T
16135010 TTAGCTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (17 bp):
TCCTTGTACTATAGCAT
Found at i:16137479 original size:20 final size:19
Alignment explanation
Indices: 16137433--16137481 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
16137423 AACCTTAAAC
16137433 CCTAAACCTCAAATTTGAT
1 CCTAAACCTCAAATTTGAT
16137452 CCTTAAACCTCAAACTTTGAAT
1 CC-TAAACCTCAAA-TTTG-AT
16137474 CC-AAACCT
1 CCTAAACCT
16137482 TGAACCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.07
20 17 0.63
21 4 0.15
22 4 0.15
ACGTcount: A:0.37, C:0.31, G:0.04, T:0.29
Consensus pattern (19 bp):
CCTAAACCTCAAATTTGAT
Found at i:16137531 original size:26 final size:26
Alignment explanation
Indices: 16137502--16137555 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
16137492 ATCCTGAACC
**
16137502 TTAAACTTGACCTTTTGGTTCAGGGT
1 TTAAACTTGACCTTCAGGTTCAGGGT
* **
16137528 TTAAATTTGATGTTCAGGTTCAGGGT
1 TTAAACTTGACCTTCAGGTTCAGGGT
16137554 TT
1 TT
16137556 GAGATTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.11, G:0.24, T:0.44
Consensus pattern (26 bp):
TTAAACTTGACCTTCAGGTTCAGGGT
Found at i:16137570 original size:27 final size:26
Alignment explanation
Indices: 16137518--16137574 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
16137508 TTGACCTTTT
* *
16137518 GGTTCAGGGTTTAAATTTGATGTTCA
1 GGTTCAGGGTTTAAATTTAAAGTTCA
*
16137544 GGTTCAGGGTTTGAGATTTAAAGTTCA
1 GGTTCAGGGTTT-AAATTTAAAGTTCA
16137571 GGTT
1 GGTT
16137575 AAAAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.23, C:0.07, G:0.30, T:0.40
Consensus pattern (26 bp):
GGTTCAGGGTTTAAATTTAAAGTTCA
Found at i:16138926 original size:28 final size:28
Alignment explanation
Indices: 16138894--16138951 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
16138884 TTAAGAATTG
16138894 AGCAATGTCTTAAATGGATATTAAACCA
1 AGCAATGTCTTAAATGGATATTAAACCA
16138922 AGCAATGTCTTAAATGGATATTAAACCA
1 AGCAATGTCTTAAATGGATATTAAACCA
16138950 AG
1 AG
16138952 GATCAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.28
Consensus pattern (28 bp):
AGCAATGTCTTAAATGGATATTAAACCA
Found at i:16145117 original size:24 final size:24
Alignment explanation
Indices: 16145063--16145118 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
16145053 TCCTAGCAGT
* *
16145063 TTGAGTAGGTGCCTCAGCAGCAAG
1 TTGAGTGGGTGCCTCAGCAGCAAC
* * *
16145087 TTGAGTGGGTGCTTTAGTAGCAAC
1 TTGAGTGGGTGCCTCAGCAGCAAC
16145111 TTGAGTGG
1 TTGAGTGG
16145119 ACTCCTTGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (24 bp):
TTGAGTGGGTGCCTCAGCAGCAAC
Found at i:16150014 original size:43 final size:43
Alignment explanation
Indices: 16149945--16150059 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
16149935 AAAACACCAC
*** * * * *
16149945 TATAGAACATGATCTTTAGTGGCGCTTTTCCTAAAAATGTCGG
1 TATAGAACATGATCTTTAGCAACGCTTTTACTAAAAACGCCGA
* *
16149988 TATAGAACATGATCTTTAGCAACGCTTTTATTACAAACGCCGA
1 TATAGAACATGATCTTTAGCAACGCTTTTACTAAAAACGCCGA
* * *
16150031 TAAAGAACATGATTTTTAGCAACGTTTTT
1 TATAGAACATGATCTTTAGCAACGCTTTT
16150060 TTACAAACGT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (43 bp):
TATAGAACATGATCTTTAGCAACGCTTTTACTAAAAACGCCGA
Found at i:16150565 original size:21 final size:21
Alignment explanation
Indices: 16150513--16150565 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
16150503 ATTTTCTTGT
* *
16150513 TGCCTCTGCTACCCTTGCTAC
1 TGCCTCTGCTTCCCTCGCTAC
16150534 TGCCTCTGCTTCCCTCGCTAC
1 TGCCTCTGCTTCCCTCGCTAC
*
16150555 TGCCTCCGCTT
1 TGCCTCTGCTT
16150566 TAAGTTGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.06, C:0.45, G:0.15, T:0.34
Consensus pattern (21 bp):
TGCCTCTGCTTCCCTCGCTAC
Found at i:16160470 original size:41 final size:41
Alignment explanation
Indices: 16160405--16160485 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
16160395 AAATTCATGG
*
16160405 CGTTTATGGGAAAAACACTACTATTACTTTACCTTTTGTGA
1 CGTTAATGGGAAAAACACTACTATTACTTTACCTTTTGTGA
* * * *
16160446 CGTTAATGGGTAAAACGCTGCTATTGCTTTACCTTTTGTG
1 CGTTAATGGGAAAAACACTACTATTACTTTACCTTTTGTG
16160486 GTGTTTATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (41 bp):
CGTTAATGGGAAAAACACTACTATTACTTTACCTTTTGTGA
Found at i:16160502 original size:41 final size:41
Alignment explanation
Indices: 16160413--16160510 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 41
16160403 GGCGTTTATG
* *
16160413 GGAAAAACACTACTATTACTTTACCTTTTGTGACGTTAATG
1 GGAAAAACGCTACTATTACTTTACCTTTTGTGACGTTAATA
* * * ** *
16160454 GGTAAAACGCTGCTATTGCTTTACCTTTTGTGGTGTTTATA
1 GGAAAAACGCTACTATTACTTTACCTTTTGTGACGTTAATA
* *
16160495 TGAAAAACGCCACTAT
1 GGAAAAACGCTACTAT
16160511 ATAATGACTT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (41 bp):
GGAAAAACGCTACTATTACTTTACCTTTTGTGACGTTAATA
Found at i:16165556 original size:32 final size:32
Alignment explanation
Indices: 16165520--16165584 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
16165510 TACAACGAGT
16165520 TATTGTACTCTTGTAGGAGGAAACTTTGTCAC
1 TATTGTACTCTTGTAGGAGGAAACTTTGTCAC
16165552 TATTGTACTCTTGTAGGAGGAAACTTTGTCAC
1 TATTGTACTCTTGTAGGAGGAAACTTTGTCAC
16165584 T
1 T
16165585 TGAAGGAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (32 bp):
TATTGTACTCTTGTAGGAGGAAACTTTGTCAC
Found at i:16181777 original size:25 final size:25
Alignment explanation
Indices: 16181749--16181921 Score: 152
Period size: 25 Copynumber: 7.0 Consensus size: 25
16181739 AAAGCATTTA
16181749 AGAGAATTCGCCACAAAGGCTTTCT
1 AGAGAATTCGCCACAAAGGCTTTCT
* *
16181774 AGAGAGTTTG-CACAAAGGCTTTCT
1 AGAGAATTCGCCACAAAGGCTTTCT
* * *
16181798 AGAGAGTTTC-CCACAAAGGTTTTCC
1 AGAGA-ATTCGCCACAAAGGCTTTCT
* * *
16181823 AAAGAATTCACCACAAAGGCTTTCC
1 AGAGAATTCGCCACAAAGGCTTTCT
* * * *
16181848 AGATAGTTCACTACAAAGGCTTTCT
1 AGAGAATTCGCCACAAAGGCTTTCT
* * **
16181873 AAAGAATTCTCCACAAAATCTTTCT
1 AGAGAATTCGCCACAAAGGCTTTCT
* * *
16181898 AGAGAATTTGCAACAAAGACTTTC
1 AGAGAATTCGCCACAAAGGCTTTC
16181922 CAAAGAAATT
Statistics
Matches: 118, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
24 22 0.19
25 96 0.81
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (25 bp):
AGAGAATTCGCCACAAAGGCTTTCT
Found at i:16181904 original size:75 final size:74
Alignment explanation
Indices: 16181749--16181923 Score: 192
Period size: 75 Copynumber: 2.4 Consensus size: 74
16181739 AAAGCATTTA
* ** * *
16181749 AGAGAATTCGCCACAAAGGCTTTCTAGAGAGTTTGCACAAAGGCTTTCTAGAGAGTTTCCCACAA
1 AGAGAATTCGCCACAAAGGCTTTCCAGAGAGTTCACACAAAGGCTTTCTAAAGAATTTCCCACAA
*
16181814 AGGTTTTCC
66 AGATTTTCC
* * *
16181823 AAAGAATTCACCACAAAGGCTTTCCAGATAGTTCACTACAAAGGCTTTCTAAAGAA-TTCTCCAC
1 AGAGAATTCGCCACAAAGGCTTTCCAGAGAGTTCAC-ACAAAGGCTTTCTAAAGAATTTC-CCAC
*
16181887 AAA-ATCTTTCT
64 AAAGAT-TTTCC
* * *
16181898 AGAGAATTTGCAACAAAGACTTTCCA
1 AGAGAATTCGCCACAAAGGCTTTCCA
16181924 AAGAAATTGC
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
74 34 0.41
75 49 0.59
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (74 bp):
AGAGAATTCGCCACAAAGGCTTTCCAGAGAGTTCACACAAAGGCTTTCTAAAGAATTTCCCACAA
AGATTTTCC
Found at i:16181928 original size:25 final size:25
Alignment explanation
Indices: 16181860--16181933 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
16181850 ATAGTTCACT
* *
16181860 ACAAAGGCTTTCTAAAGAATTCT-CC
1 ACAAAGACTTTCTAAAGAATT-TGCA
*
16181885 ACAAA-ATCTTTCTAGAGAATTTGCA
1 ACAAAGA-CTTTCTAAAGAATTTGCA
* *
16181910 ACAAAGACTTTCCAAAGAAATTGC
1 ACAAAGACTTTCTAAAGAATTTGC
16181934 CATAAAAGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
24 1 0.03
25 38 0.95
26 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (25 bp):
ACAAAGACTTTCTAAAGAATTTGCA
Found at i:16183429 original size:55 final size:56
Alignment explanation
Indices: 16183366--16183485 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
16183356 AAGGGAAACT
*
16183366 AATCCAATAG-CGAATAGAATATTTAATTTTAAAAAATTAACTGACTAAATCGAAA
1 AATCCAATAGACGAATAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAA
* * * *
16183421 AATCCAATAGTTAACGACTAGAATATTTAATTTTGAGAAACTAAGTGACTAAATCGAAA
1 AATCCAATAG---ACGAATAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAA
16183480 AATCCA
1 AATCCA
16183486 GTAGTTAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 10 0.18
59 46 0.82
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.28
Consensus pattern (56 bp):
AATCCAATAGACGAATAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAA
Found at i:16183454 original size:59 final size:59
Alignment explanation
Indices: 16183380--16183493 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 59
16183370 CAATAGCGAA
*
16183380 TAGAATATTTAATTTTAAAAAATTAACTGACTAAATCGAAAAATCCAATAGTTAACGAC
1 TAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAAAATCCAATAGTTAACGAC
* * * *
16183439 TAGAATATTTAATTTTGAGAAACTAAGTGACTAAATCGAAAAATCCAGTAGTTAA
1 TAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAAAATCCAATAGTTAA
16183494 ATGATGAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (59 bp):
TAGAATATTTAATTTTAAAAAACTAACTGACTAAATCGAAAAATCCAATAGTTAACGAC
Found at i:16189078 original size:41 final size:42
Alignment explanation
Indices: 16189027--16189135 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
16189017 TTGGAAACGT
*
16189027 AAATCAACTGAAATAAAATTGCAATT-GAAACC-AAAAAAATG
1 AAATAAACTGAAATAAAATTGCAATTAGAAACCTAAAAAAA-G
* ** **
16189068 AAGTAAACTGAAATAAAATCACAATTGAGAAACCTAAGGAAAG
1 AAATAAACTGAAATAAAATTGCAATT-AGAAACCTAAAAAAAG
* *
16189111 AAATGAACTGAAATAAGATTGCAAT
1 AAATAAACTGAAATAAAATTGCAAT
16189136 CGAGAAAACT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
41 22 0.41
43 27 0.50
44 5 0.09
ACGTcount: A:0.56, C:0.11, G:0.14, T:0.19
Consensus pattern (42 bp):
AAATAAACTGAAATAAAATTGCAATTAGAAACCTAAAAAAAG
Found at i:16196337 original size:21 final size:24
Alignment explanation
Indices: 16196300--16196345 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
16196290 TATATTATTT
16196300 ATATAAATGATAAAAAT-AAATAG
1 ATATAAATGATAAAAATAAAATAG
16196323 ATAT-AATGA-AAAAATAAAATAG
1 ATATAAATGATAAAAATAAAATAG
16196345 A
1 A
16196346 AATACAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
22 12 0.55
23 4 0.18
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (24 bp):
ATATAAATGATAAAAATAAAATAG
Found at i:16197136 original size:45 final size:44
Alignment explanation
Indices: 16197081--16197380 Score: 164
Period size: 45 Copynumber: 6.9 Consensus size: 44
16197071 GGATTATCGG
* * *
16197081 CTTTAATCTGCTCCACTACAACTTCAGGGAGATGAGATTTG-CCA
1 CTTTAATCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGCCCA
*
16197125 TCTTTAGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCCCA
1 -CTTTAATCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGCCCA
* * * *
16197171 C-TTATTTTGCTCCACTGCAACTTCAAGGAGATAAGGCTAG---A
1 CTTTAATCTGCTCCACTGCAACTTC-AGGAGATAAGACTTGCCCA
*** *
16197212 -TGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAATG----
1 CTTTAATCTGCTCCACTGCAACTTCAG-GAGATAAGA-CT--TGCCCA
* * * * **
16197254 TTTTAATCCGCT-CACTGCAACTTCAGCGAGATAGGA-TTACCGG
1 CTTTAATCTGCTCCACTGCAACTTCAG-GAGATAAGACTTGCCCA
* *
16197297 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTG-CCA
1 CTTTAATCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGCCCA
* *
16197341 TCTTTAGTCTGC-CTCACTGCAACTTCAGAAGGATAAGACT
1 -CTTTAATCTGCTC-CACTGCAACTTCAGGA-GATAAGACT
16197381 CGATCTGTTA
Statistics
Matches: 199, Mismatches: 35, Indels: 42
0.72 0.13 0.15
Matches are distributed among these distances:
39 3 0.02
40 19 0.10
41 9 0.05
43 39 0.20
44 56 0.28
45 70 0.35
46 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGAGATAAGACTTGCCCA
Found at i:16197275 original size:43 final size:43
Alignment explanation
Indices: 16197220--16197331 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
16197210 GATGCGATCT
* * *
16197220 GCTCTCTGCAACTTCAGAGAGATAAGATCTA-ATGTTTTAATCC
1 GCTCACTGCAACTTCAGAGAGATAAGAT-TACAGGCTTTAATCC
* * * *
16197263 GCTCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCT
1 GCTCACTGCAACTTCAGAGAGATAAGATTACAGGCTTTAATCC
*
16197306 GCTCCACTGCAACTTCAGGGAGATAA
1 GCT-CACTGCAACTTCAGAGAGATAA
16197332 AATTTGCCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 2 0.03
43 36 0.62
44 20 0.34
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
GCTCACTGCAACTTCAGAGAGATAAGATTACAGGCTTTAATCC
Found at i:16197349 original size:216 final size:217
Alignment explanation
Indices: 16196969--16197380 Score: 668
Period size: 216 Copynumber: 1.9 Consensus size: 217
16196959 CCACTCCTGG
*
16196969 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
1 TGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
* * *
16197034 AGGTTTTAATCGACTCTACTGTAACTTTAGGAAGATAGGATTATCGGCTTTAATCTGCTCCACTA
66 AGGTTTTAATCGACTCTACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTA
* * *
16197099 CAACTTCAGGGAGATGAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGGATAAGAC
131 CAACTTCAGGGAGATAAAATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAGAC
16197164 TTGCCCACTTATTTTGCTCCAC
196 TTGCCCACTTATTTTGCTCCAC
* * * *
16197186 TGCAACTTCAAGGAGATAAGGCTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTA
1 TGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
*
16197251 ATGTTTTAATCCG-CTC-ACTGCAACTTCAGCG-AGATAGGATTACCGGCTTTAATCTGCTCCAC
66 AGGTTTTAAT-CGACTCTACTGCAACTTCAG-GAAGATAGGATTACCGGCTTTAATCTGCTCCAC
*
16197313 TGCAACTTCAGGGAGATAAAATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAG
129 TACAACTTCAGGGAGATAAAATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAG
16197378 ACT
194 ACT
16197381 CGATCTGTTA
Statistics
Matches: 180, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
216 105 0.58
217 73 0.41
218 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (217 bp):
TGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
AGGTTTTAATCGACTCTACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTA
CAACTTCAGGGAGATAAAATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAGAC
TTGCCCACTTATTTTGCTCCAC
Found at i:16197603 original size:43 final size:43
Alignment explanation
Indices: 16197533--16197717 Score: 214
Period size: 43 Copynumber: 4.3 Consensus size: 43
16197523 TTTTTGAAAT
16197533 AAACGCCGCTATAA-ACC-ATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTA-AAGACCAAT-ACCTTTAGCGACGCTTTTCCCAC
* * * *
16197576 AAACGCCACTAAAGACCAATACTTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCAATACCTTTAGCGACGCTTTTCCCAC
* * * *
16197619 AAACGTCGCTATAGACCAGTACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAATACCTTTAGCGACGCTTTTCCCAC
* * * *
16197662 AAACGCCGCTATAGACC-ATGACCTTTAGCGATGCTTTTCACAA
1 AAACGCCGCTAAAGACCAAT-ACCTTTAGCGACGCTTTTCCCAC
16197705 AAACGCCGCTAAA
1 AAACGCCGCTAAA
16197718 AACTTATCTT
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.02
43 117 0.96
44 2 0.02
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAATACCTTTAGCGACGCTTTTCCCAC
Found at i:16197689 original size:86 final size:86
Alignment explanation
Indices: 16197533--16197720 Score: 236
Period size: 86 Copynumber: 2.2 Consensus size: 86
16197523 TTTTTGAAAT
16197533 AAACGCCGCTATAAACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGACCAATAC
1 AAACGCCGCTATAAACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGACCAATAC
*
16197598 TTTTAGCGGCACTTTTCCCAC
66 CTTTAGCGGCACTTTTCCCAC
* * * * *
16197619 AAACGTCGCTATAGACCA-GTACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACC-ATG
1 AAACGCCGCTATAAACCATG-ACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGACCAAT-
*** * *
16197682 ACCTTTAGCGATGCTTTTCACAA
64 ACCTTTAGCGGCACTTTTCCCAC
*
16197705 AAACGCCGCTAAAAAC
1 AAACGCCGCTATAAAC
16197721 TTATCTTTTA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
85 3 0.03
86 83 0.97
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTATAAACCATGACCTTTAGCGACGCTTTTCCCACAAACGCCACTAAAGACCAATAC
CTTTAGCGGCACTTTTCCCAC
Found at i:16198040 original size:43 final size:43
Alignment explanation
Indices: 16197992--16198086 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
16197982 ACATATGCAA
* * * *
16197992 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
16198035 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
16198078 GGTAATAAA
1 GGTAATAAA
16198087 GTATCCTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:16202374 original size:15 final size:15
Alignment explanation
Indices: 16202354--16202383 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16202344 TCATAAGACA
16202354 TAACCCCTAAACCCT
1 TAACCCCTAAACCCT
*
16202369 TAACCCCTAACCCCT
1 TAACCCCTAAACCCT
16202384 CTTTTACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.50, G:0.00, T:0.20
Consensus pattern (15 bp):
TAACCCCTAAACCCT
Found at i:16202788 original size:14 final size:14
Alignment explanation
Indices: 16202754--16202791 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
16202744 CCTTAAATCC
16202754 TACATT-AACCATA
1 TACATTAAACCATA
*
16202767 TACCTTAAACCATA
1 TACATTAAACCATA
*
16202781 TATATTAAACC
1 TACATTAAACC
16202792 CTAAACTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
TACATTAAACCATA
Found at i:16203168 original size:41 final size:41
Alignment explanation
Indices: 16203111--16203263 Score: 256
Period size: 41 Copynumber: 3.7 Consensus size: 41
16203101 AGATGTTGTT
16203111 GCGGCGCTT-TATCAAAAACGCCGCTAAAAGC-CTGAGCATTA
1 GCGGCGCTTCT-TCAAAAACGCCGCT-AAAGCTCTGAGCATTA
*
16203152 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCTTTGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
*
16203193 GCGACGCTTCTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
16203234 GCGGCGCTTCTTCAAAAACGCCGCTAAAGC
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGC
16203264 CCCAAAAGGT
Statistics
Matches: 106, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
40 5 0.05
41 100 0.94
42 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTCTTCAAAAACGCCGCTAAAGCTCTGAGCATTA
Found at i:16203405 original size:40 final size:40
Alignment explanation
Indices: 16203329--16203441 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 40
16203319 TAAAAAACGA
* **
16203329 CGCTAATGCTC-ATTTTTGGCGGCGATTTCCTG-AAAGCGC
1 CGCTAATGCTCGATTTTTAGCGGCG-TTTTATGTAAAGCGC
*
16203368 CGCTAATGCTCGATCTTTAGCGGCGTTTTATGTAAAGCGC
1 CGCTAATGCTCGATTTTTAGCGGCGTTTTATGTAAAGCGC
* * *
16203408 CGCTAATGCTCGATTTTTAGTGGCATTTTTTGTA
1 CGCTAATGCTCGATTTTTAGCGGCGTTTTATGTA
16203442 CAAACGCCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 16 0.25
40 48 0.75
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (40 bp):
CGCTAATGCTCGATTTTTAGCGGCGTTTTATGTAAAGCGC
Found at i:16211305 original size:20 final size:20
Alignment explanation
Indices: 16211282--16211328 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
16211272 GGGTTAAGAT
*
16211282 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
16211302 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
16211322 TGAGCTG
1 TGAGCTG
16211329 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:16212529 original size:24 final size:24
Alignment explanation
Indices: 16212500--16212545 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
16212490 ATCATCTTTT
* *
16212500 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
16212524 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
16212546 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:16223211 original size:50 final size:50
Alignment explanation
Indices: 16223093--16223275 Score: 267
Period size: 50 Copynumber: 3.6 Consensus size: 50
16223083 TTTGAGTACT
* *
16223093 TCTGATTAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* * *
16223144 TTTGATTAGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACATTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
16223194 TCTGATCAGTGAAAAGTGATAAGTGATAAGTGGTAACTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTA
* * *
16223244 TCTGATCAGTGAGAAGAGATAAATGATAAGTG
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTG
16223276 ATTCCGTGTA
Statistics
Matches: 121, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 86 0.71
51 35 0.29
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (50 bp):
TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:16232111 original size:13 final size:12
Alignment explanation
Indices: 16232082--16232115 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
16232072 TGAAAATTAG
16232082 TTAGAGAG-ATT
1 TTAGAGAGAATT
16232093 TTAGAGAGAATT
1 TTAGAGAGAATT
16232105 TTGAGAGAGAA
1 TT-AGAGAGAA
16232116 AATGTTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.38
12 5 0.24
13 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (12 bp):
TTAGAGAGAATT
Found at i:16232180 original size:2 final size:2
Alignment explanation
Indices: 16232168--16232210 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
16232158 GCAAAAAGAA
*
16232168 AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
16232210 A
1 A
16232211 AGAAGCTCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:16250440 original size:60 final size:60
Alignment explanation
Indices: 16250324--16250441 Score: 139
Period size: 60 Copynumber: 2.0 Consensus size: 60
16250314 GGAATGATCT
* * * ** *
16250324 TGGTCTCAATGATAATCTGAATGGTCAAGATATTAATCCTCTTGTTCATAGGGTGATACC
1 TGGTCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCAAGTTCATAGAGTGATACC
* * *
16250384 TGGTCTTAATGATAATCTAAATGGTCAAGACGCTAATCCTCAAGTAT-GTAGAGTGATA
1 TGGTCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCAAGT-TCATAGAGTGATA
16250442 AATAACCGAG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
60 47 0.98
61 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (60 bp):
TGGTCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCAAGTTCATAGAGTGATACC
Found at i:16262596 original size:16 final size:16
Alignment explanation
Indices: 16262575--16262605 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16262565 CCAACGAATA
*
16262575 TATATATGAATATATG
1 TATATATGAAAATATG
16262591 TATATATGAAAATAT
1 TATATATGAAAATAT
16262606 CAAAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
TATATATGAAAATATG
Found at i:16264271 original size:100 final size:100
Alignment explanation
Indices: 16264181--16265422 Score: 1317
Period size: 100 Copynumber: 12.4 Consensus size: 100
16264171 CGTTGTTGTA
* * * * * * * ** *
16264181 GCTTCAATCTATTCCATTGCACCGCCAGAGAAGTATGATTCACCACTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
*
16264246 ACTGCAATATCGGGGAAGCAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * * *
16264281 GCTTTCATCTGTTCCACTACATCACCAGGGAGGTAAGATTCGCTGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
* * * *
16264346 ACTGCAATTTTGGGGAAGTAAGATTCACCAATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * * * * * * * *
16264381 GCTTTAATCTGCTCTACTACACCACTAAGGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
* * *
16264446 ATTGCAATGCCGGGGAAACAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * *
16264481 GCTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAAGATTTGCTGCTGTAGCTTTAACCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
* * *
16264546 GCTGCAATGTC-AGGATAGCAAGATTCACCGTTGTG
66 ACTGCAATGTCGGGGA-AGCAAGATTCACCGATGTG
* * * * *
16264581 GCTTTAATCTGCTCCACTGCATCGCCTGGG-GAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTT
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAG-GTAAGATTCGCTGCTGTAGCTTTAATCTTTTT
* *
16264645 AACTGCAATATCGGGGAAGTAAGATTCACCGATGTG
65 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * * * * * * * *
16264681 GCTTTAATCTGCTCTACTGCACCGCTAGGGAAGCAGGATTTGCCGCTGTGGCTTTAATTTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
** *
16264746 ACTGCAATACCGGGGAAACAAGATTCACCGATGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * * * *
16264781 GCTTTAATCTGTTCCACTGCACCGCCTGAGAGGTAAGATTTGATGCTATAGCTTTAACCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
* *
16264846 ACTGCAATGTC-GGAACAGCAAGATTCACCGCTGTG
66 ACTGCAATGTCGGGGA-AGCAAGATTCACCGATGTG
* * * * * *
16264881 GCTTTAATCTGCTCCACTGCATCGCCTGGG-GAATAAGATTCACTGTTGTAGCTTTAATCTTTTT
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAG-GTAAGATTCGCTGCTGTAGCTTTAATCTTTTT
* * *
16264945 AACTGCAATGCCGGGGAAACAAGATTCACCGATATG
65 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * *
16264981 GCTTTAATCTATTCCAATGCACCGCCTA-GGAGGTAAGATACGCTGCTGTAGCTTTAATCTTTTT
1 GCTTTAATCTGTTCCACTGCACCGCC-AGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTT
* * * * *
16265045 AACCGCAATGT-GAGGGAGGTAAGATTCATCGTTGTG
65 AACTGCAATGTCG-GGGAAGCAAGATTCACCGATGTG
* * *
16265081 GCTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAAGATTTGTTGCTGTAGCTTTAATCTTTTTT
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATC-TTTTT
* * * * * * *
16265146 GACCGCAATGTCAGGGAGGTAAGATTCACTGTTGTG
65 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* ** * *
16265182 GCTTTAATCTATTCCACTGCACCGCTTGGGAGGTAAAATTCACTGCTGTAGCTTTAATCTTTTTA
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
*** * * * * *
16265247 ACCATAATGTCAGAGAGGCAAGATTCATCGTTGTG
66 ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * * *
16265282 GCTTTAATCTGTTCCACTGCATCGCCTGGGAGGCAAGATTTGCTGTTGTAGCTTTAATCTTTTTG
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTT-
*
16265347 AACTGCAATGTCGAGGAAGCAAGATTCACCGATGTG
65 AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
* * * *
16265383 GCTTTAATCTGTTCCACTACATCGCCTGAGAGGTAAGATT
1 GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATT
16265423 TGTAATTCTT
Statistics
Matches: 955, Mismatches: 173, Indels: 27
0.83 0.15 0.02
Matches are distributed among these distances:
99 9 0.01
100 786 0.82
101 160 0.17
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (100 bp):
GCTTTAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTA
ACTGCAATGTCGGGGAAGCAAGATTCACCGATGTG
Found at i:16265019 original size:50 final size:49
Alignment explanation
Indices: 16264865--16265422 Score: 137
Period size: 50 Copynumber: 11.1 Consensus size: 49
16264855 TCGGAACAGC
* * * *
16264865 AAGATTCACCGCTGTGGCTTTAATCTGCTCCACTGCATCGCCT-GG-GGAAT
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAGGAGG--T
* * * ** ** ** ***
16264915 AAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGCCGGGGAAAC
1 AAGATTCACCGATGTGGCTTTAATCTTTCCAA-TGCACCGCCTAGGAGGT
*
16264965 AAGATTCACCGATATGGCTTTAATCTATTCCAATGCACCGCCTAGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAGGAGGT
* * * * * ** * **
16265015 AAGATACGCTGCTGTAGCTTTAATCTTTTTAACCGCAATG--TGAGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCTTTCCAA-TGCACCGCCT-A-GGAGGT
* * * *
16265065 AAGATTCATCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAGGAGGT
**** * * ** *
16265115 AAGATTTGTTGCTGTAGCTTTAATCTTT--TTTG-ACCGCAATGTCAGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCTTTCCAATGCACCGC---CT-A-GGAGGT
* * * * *
16265166 AAGATTCACTGTTGTGGCTTTAATCTATTCCACTGCACCGCTTGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAGGAGGT
* * * * ** * ** * *
16265216 AAAATTCACTGCTGTAGCTTTAATCTTTTTAA-CCATAATGTC-AGAGAGGC
1 AAGATTCACCGATGTGGCTTTAATCTTTCCAATGC--ACCGCCTAG-GAGGT
* * * * * *
16265266 AAGATTCATCGTTGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGAGGC
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAGGAGGT
** * * * ** ** * * * *
16265316 AAGATTTGCTGTTGTAGCTTTAATCTTTTTGAACTGCAATGTCGAGGAAGC
1 AAGATTCACCGATGTGGCTTTAATC-TTTCCAA-TGCACCGCCTAGGAGGT
* * *
16265367 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCCT-GAGAGGT
1 AAGATTCACCGATGTGGCTTTAATCT-TTCCAATGCACCGCCTAG-GAGGT
16265417 AAGATT
1 AAGATT
16265423 TGTAATTCTT
Statistics
Matches: 356, Mismatches: 123, Indels: 58
0.66 0.23 0.11
Matches are distributed among these distances:
46 5 0.01
47 2 0.01
48 2 0.01
49 15 0.04
50 245 0.69
51 75 0.21
52 5 0.01
54 2 0.01
55 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (49 bp):
AAGATTCACCGATGTGGCTTTAATCTTTCCAATGCACCGCCTAGGAGGT
Found at i:16265731 original size:142 final size:142
Alignment explanation
Indices: 16265475--16266463 Score: 1595
Period size: 142 Copynumber: 7.0 Consensus size: 142
16265465 GACCTTATGT
* * * * *
16265475 GATCTAATCTACTGTAACTTCAGAGATATAATATCATTTATTTTACTCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* * *
16265540 AGGGAGTTAGGATTACTAGCTTCAATCTGCTCCACTGTAATATCAGGGAGATAAGATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
16265605 TCAATCTGATGC
131 TCAATCTGATGC
* *
16265617 GATCTACTCTACTATAACTTCAGAGAGATAAGATCCCTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
16265682 AGGGAGTTAGGATTACTAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
*
16265747 TCAATCTGATGT
131 TCAATCTGATGC
* *
16265759 GATCTACACTACTGTAGCTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTAG-AATCT
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT-GTAATCT
* * *
16265823 CAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATGAGATTTTTGGC
65 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGC
16265888 TTCAATCTGATGC
130 TTCAATCTGATGC
* *
16265901 GATCTACTCTACTATAACTTCAGAGAGATAAGATCCCTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* * *
16265966 AGGGAGTTAGGATTACTAGCTTCAATCTGCTCCACTGTAATATCAGGGAGATAAGATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
*
16266031 TCAATCTGATGT
131 TCAATCTGATGC
* * *
16266043 GATCTACACTACTGTAGCTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
16266108 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCATGGAGATGAGATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
16266173 TCAATCTGATGC
131 TCAATCTGATGC
*
16266185 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
16266250 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCATGGAGATGAGATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
* *
16266315 TCAATCTAATCC
131 TCAATCTGATGC
* * *
16266327 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCTGCTCCCCTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* * *
16266392 AGGGAGATAGGATTAATAGCTTC-ATCTGCTCCGCTGTAATCTCAGGGAGAAAATATTTCTGGCT
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
16266456 TCAATCTG
131 TCAATCTG
16266464 CTCCACTGTA
Statistics
Matches: 788, Mismatches: 57, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
141 45 0.06
142 742 0.94
143 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCT
TCAATCTGATGC
Found at i:16266457 original size:43 final size:44
Alignment explanation
Indices: 16266371--16266492 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 44
16266361 CATTTATTTT
* * *
16266371 AATCTGCTCCCCTGTAATCTCAGGGAGATAGGATTAATAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGAAAAGATTAATAGCTTC
* * ** *
16266415 -ATCTGCTCCGCTGTAATCTCAGGGAGAAAATATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGAAAAGATTAATAGCTTC
* *
16266458 AATCTGCTCCACTGTAA-CATCAGAGAGATAAGATT
1 AATCTGCTCCACTGTAATC-TCAGGGAGAAAAGATT
16266493 CACTATTTCC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 37 0.57
44 28 0.43
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGAAAAGATTAATAGCTTC
Found at i:16268846 original size:20 final size:20
Alignment explanation
Indices: 16268823--16268870 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
16268813 GATTTCTCTC
*
16268823 TTTTTCTTTTGACTTTGATT
1 TTTTTATTTTGACTTTGATT
*
16268843 TTTTTATTTTGATTTTGATT
1 TTTTTATTTTGACTTTGATT
16268863 TTTTTATT
1 TTTTTATT
16268871 GAATCTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.12, C:0.04, G:0.08, T:0.75
Consensus pattern (20 bp):
TTTTTATTTTGACTTTGATT
Found at i:16273689 original size:16 final size:16
Alignment explanation
Indices: 16273668--16273698 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16273658 CCAACGAATA
*
16273668 TATATATGAATATATG
1 TATATATGAAAATATG
16273684 TATATATGAAAATAT
1 TATATATGAAAATAT
16273699 CAAAAATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
TATATATGAAAATATG
Found at i:16275336 original size:50 final size:50
Alignment explanation
Indices: 16275255--16276616 Score: 758
Period size: 50 Copynumber: 27.2 Consensus size: 50
16275245 GTGATGTCGA
* * * * * * * * **
16275255 GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATCCCACTGCACCGCCAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * ** *
16275305 GGAAGTAAGATTCGCCACTGTGGCTTTAATCTTTTTAACTACAATATCGG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * *
16275355 GGAAGTAAGATTCACCGATGTGGCTTTCATCTGTTCCACTGCATTGCCAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * ** *
16275405 GGAGGTAAGATTCACTGCTGTGGCTTTAATATTTTTAACTGCAATTTCGG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* ** * *** *
16275455 GGAAGTAAGATTCACCGATGTGGCTTTAATCTGCTCTACTGCACCACTAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
** * * *
16275505 GGAAGTAAGATTTGCCGCTGTGGCTTTAATCTTTTTAACTGCAATACCGG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * ** *
16275555 GGAAATAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * * *
16275605 GGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * ** * *
16275654 GGATAGCAAGATTCACTGTTGTGGCTTTAATCTGCTCCACTGC-ATCGCCTG
1 GGA-AGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAAT-GCCAG
* * * * * *
16275705 GGGAGTAAGATTCGCTC-TTGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAGTAAGATTCAC-CGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * ** * *
16275754 GGATAGCAAGATTCACTGTTGTGGCTTTAATCTGCTCCACTGC-ATCGCCTG
1 GGA-AGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAAT-GCCAG
* * * * * * *
16275805 GGGAGTAAGATTCGCTC-TTGTAGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGTAAGATTCAC-CGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* ** * ** * *
16275855 GGAAGTAAGATTCACCGATGTGGCTTTAATCTGCTCTACTGCACGGCTAA
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * *
16275905 GGAAGTAGGATTCGCCGCTGTGGCTTTAATCTTTTTAACTACAATGCC-G
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
** * * ** **
16275954 AGGAAACAAGATTCACCGATGTGGCTTTAAT-TTGTTCCACTGCACCGCTTG
1 -GGAAGTAAGATTCACCGCTGTGGCTTTAATCTT-TTCAACTGCAATGCCAG
* * ** * *
16276005 GGAGGTAAGACTCGA-TACTGTAGCTTTAATCTTTTTAACTGCAATGCC-G
1 GGAAGTAAGATTC-ACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
** * * * ** * * *
16276054 GGACAACAAGATTCACCGTTGTAGATTTAATCTACTCCACTGCATTGCTTAG
1 GGA-AGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGC-CAG
* ** * * * *
16276106 GG-TGTAAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGCCAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
** * * * * *
16276155 GGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * *
16276205 AG-AGCTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACTGCAATGCCAG
1 GGAAG-TAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
** * * * * *
16276255 GGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * * * *
16276305 AGAGGTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* ** * * * * ** *
16276355 GGAGGCGAGATTCACCGTTGTGGCTTTAATATGTTCCACTGCACCGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * * * * * *
16276405 AGAGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGTAATGTCAG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
* * * * * * * *
16276455 GGACGCAAGATTAACTGTTGTGGCTTTAATCTGTTCCACTGC-ATCGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAAT-GCCAG
* * * * * * *
16276505 GGAGGTAA-ATTCGA-TGTTGTAGCTTTAATCTTTTTGAACTGCAATGTCGG
1 GGAAGTAAGATTC-ACCGCTGTGGCTTTAATC-TTTTCAACTGCAATGCCAG
* * * * *
16276555 GGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGC-ATCGCCTG
1 GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAAT-GCCAG
*
16276605 GGAGGTAAGATT
1 GGAAGTAAGATT
16276617 TGTAATTCTC
Statistics
Matches: 960, Mismatches: 321, Indels: 62
0.71 0.24 0.05
Matches are distributed among these distances:
49 46 0.05
50 877 0.91
51 34 0.04
52 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
GGAAGTAAGATTCACCGCTGTGGCTTTAATCTTTTCAACTGCAATGCCAG
Found at i:16275404 original size:100 final size:100
Alignment explanation
Indices: 16275228--16276616 Score: 1612
Period size: 100 Copynumber: 13.9 Consensus size: 100
16275218 TAACTCGTAA
* ** * * * * * * * * *
16275228 CTTTAATCTATTTAACTGTGATGTCGAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATCCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * ** *
16275293 CTGCACCGCCAGGGAAGTAAGATTCGCCACTGTGG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * * *
16275328 CTTTAATCTTTTTAACTACAATATCGGGGAAGTAAGATTCACCGATGTGGCTTTCATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
** * * *
16275393 CTGCATTGCCAGGGAGGTAAGATTCACTGCTGTGG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * * * *
16275428 CTTTAATATTTTTAACTGCAATTTCGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTGCTCTA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * *
16275493 CTGCACC-ACTAGGGAAGTAAGATTTGCCGCTGTGG
66 CTGCACCGCCT-GGGAGGTAAGATTCGCTGCTGTAG
** **
16275528 CTTTAATCTTTTTAACTGCAATACCGGGGAAATAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
16275593 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * *
16275628 CTTTAATCTTTTTAACTGCAATGTC-GGGATAGCAAGATTCACTGTTGTGGCTTTAATCTGCTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGA-AGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
*
16275692 ACTGCATCGCCTGGG-GAGTAAGATTCGCT-CTTGTAG
65 ACTGCACCGCCTGGGAG-GTAAGATTCGCTGC-TGTAG
* * *
16275728 CTTTAATCTTTTTAACTGCAATGTC-GGGATAGCAAGATTCACTGTTGTGGCTTTAATCTGCTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGA-AGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
*
16275792 ACTGCATCGCCTGGG-GAGTAAGATTCGCT-CTTGTAG
65 ACTGCACCGCCTGGGAG-GTAAGATTCGCTGC-TGTAG
* * *
16275828 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTGCTCTA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * * *
16275893 CTGCA-CGGCTAAGGAAGTAGGATTCGCCGCTGTGG
66 CTGCACCGCCT-GGGAGGTAAGATTCGCTGCTGTAG
* * * * *
16275928 CTTTAATCTTTTTAACTACAATGCCGAGGAAACAAGATTCACCGATGTGGCTTTAATTTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * *
16275993 CTGCACCGCTTGGGAGGTAAGACTCGATACTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * * * * **
16276028 CTTTAATCTTTTTAACTGCAATG-CCGGGACAACAAGATTCACCGTTGTAGATTTAATCTACTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGA-AGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
** * * * *
16276092 ACTGCATTGCTTAGGG-TGTAAGATTTGCTGTTGTAG
65 ACTGCACCGCCT-GGGAGGTAAGATTCGCTGCTGTAG
* * *
16276128 CTTTAATCTTTTTAACTGCAATGCCAGGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * *
16276193 CTGCACTGCCTGAGAGCTAAGATTCACTGCTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * *
16276228 CTTTAATCTTTTTAACTGCAATGCCAGGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * *
16276293 CTGCACTGCCTGAGAGGTAAGATTCACTGCTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * * * * *
16276328 CTTTAATCTTTTTAACCGCAATGTCAGGGAGGCGAGATTCACCGTTGTGGCTTTAATATGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
*
16276393 CTGCACCGCCTGAGAGGTAAGATTCGCTGCTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
* * * * * * *
16276428 CTTTAATCTTTTTAACCGTAATGTCAGGGACGCAAGATTAACTGTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * *
16276493 CTGCATCGCCTGGGAGGTAA-ATTCGATGTTGTAG
66 CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
16276527 CTTTAATCTTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 CTTTAATCTTTTT-AACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
*
16276592 ACTGCATCGCCTGGGAGGTAAGATT
65 ACTGCACCGCCTGGGAGGTAAGATT
16276617 TGTAATTCTC
Statistics
Matches: 1134, Mismatches: 139, Indels: 31
0.87 0.11 0.02
Matches are distributed among these distances:
99 42 0.04
100 1071 0.94
101 21 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCTGGGAGGTAAGATTCGCTGCTGTAG
Found at i:16276771 original size:44 final size:44
Alignment explanation
Indices: 16276718--16277259 Score: 149
Period size: 44 Copynumber: 11.7 Consensus size: 44
16276708 TTTTAATACA
16276718 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
* * * * **
16276762 CTCCGCTGTAATCCCAGAGAGAT-GATATTTTTAGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAG-GATTACTAGCTTCAATC---T--G
* * * * *
16276811 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCTG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAGGAT--TACTAGCTTCAATCTG
* * *
16276860 CTCCACTGTAATCTCAGGAAGATAGGATTACTAGCTTCAATTTA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
* * ** * *
16276904 CTCCGCTGTAATCTCAAGGAGAT-GAGATTTTTGGTTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAG-GATTACTAGCTTCAATC---T--G
* * * * *
16276953 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCTG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAGGAT--TACTAGCTTCAATCTG
* * *
16277002 CTCCACTGTAATCTCAGGAAGATAGGATTACTAGCTTCAATTTA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
* * ** * *
16277046 CTCCGCTGTAATCTCAAGGAGAT-GAGATTTTTGGTTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAG-GATTACTAGCTTCAATC---T--G
* * * * * *
16277095 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAGGAT--TACTAGCTTCAATCTG
* *
16277144 CTCCACTGTAATCTCACGGAGATAGGATTAATAGCTTC-ATCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
* * * ** * *
16277187 CTCCGCTGTAATCTTAGGGAGAAAATATTTCTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
*
16277231 CTCCACTGTAA-CATCAGGGAGATAAGATT
1 CTCCACTGTAATC-TCAGGGAGATAGGATT
16277260 CACCATTTTC
Statistics
Matches: 363, Mismatches: 79, Indels: 112
0.66 0.14 0.20
Matches are distributed among these distances:
42 3 0.01
43 43 0.12
44 197 0.54
45 6 0.02
46 3 0.01
47 9 0.02
49 4 0.01
51 8 0.02
52 3 0.01
53 6 0.02
54 71 0.20
55 7 0.02
56 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
Found at i:16276926 original size:142 final size:142
Alignment explanation
Indices: 16276661--16277230 Score: 887
Period size: 142 Copynumber: 4.0 Consensus size: 142
16276651 GAGATAAGAC
* * * *
16276661 CTGATGCTATCTACTCTACTGTAACTTCAGAGAGATAAAATCTTTTATTTTAATAC-ACTCCACT
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-CTGCTCCACT
* * * *
16276725 GTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATC-CCAGAGAGATGATA
65 GTAATCTCAGGAAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAAG-GAGATGAGA
*
16276789 TTTTTAGCTTCAAT
129 TTTTTGGCTTCAAT
16276803 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
*
16276868 TAATCTCAGGAAGATAGGATTACTAGCTTCAATTTACTCCGCTGTAATCTCAAGGAGATGAGATT
66 TAATCTCAGGAAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAAGGAGATGAGATT
*
16276933 TTTGGTTTCAAT
131 TTTGGCTTCAAT
16276945 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
*
16277010 TAATCTCAGGAAGATAGGATTACTAGCTTCAATTTACTCCGCTGTAATCTCAAGGAGATGAGATT
66 TAATCTCAGGAAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAAGGAGATGAGATT
*
16277075 TTTGGTTTCAAT
131 TTTGGCTTCAAT
*
16277087 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* * * * ** *
16277152 TAATCTCACGG-AGATAGGATTAATAGCTTC-ATCTGCTCCGCTGTAATCTTAGGGAGAAAATAT
66 TAATCTCA-GGAAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAAGGAGATGAGAT
*
16277215 TTCTGGCTTCAAT
130 TTTTGGCTTCAAT
16277228 CTG
1 CTG
16277231 CTCCACTGTA
Statistics
Matches: 403, Mismatches: 22, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
141 41 0.10
142 357 0.89
143 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
TAATCTCAGGAAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAAGGAGATGAGATT
TTTGGCTTCAAT
Found at i:16279125 original size:16 final size:16
Alignment explanation
Indices: 16279106--16279157 Score: 104
Period size: 16 Copynumber: 3.2 Consensus size: 16
16279096 ATGCTACTCC
16279106 ATGATGACATTGGCGT
1 ATGATGACATTGGCGT
16279122 ATGATGACATTGGCGT
1 ATGATGACATTGGCGT
16279138 ATGATGACATTGGCGT
1 ATGATGACATTGGCGT
16279154 ATGA
1 ATGA
16279158 AACAACCCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.31
Consensus pattern (16 bp):
ATGATGACATTGGCGT
Found at i:16283319 original size:17 final size:17
Alignment explanation
Indices: 16283287--16283333 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 17
16283277 AATTGTGCTG
16283287 GAAAAA-TAGTTT-AATT
1 GAAAAATTA-TTTAAATT
16283303 GAAAAATTATTTAAATT
1 GAAAAATTATTTAAATT
16283320 ---AAATTATTTAAATT
1 GAAAAATTATTTAAATT
16283334 AAATAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 14 0.48
16 9 0.31
17 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (17 bp):
GAAAAATTATTTAAATT
Found at i:16283325 original size:14 final size:14
Alignment explanation
Indices: 16283306--16283337 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
16283296 TTTAATTGAA
16283306 AAATTATTTAAATT
1 AAATTATTTAAATT
16283320 AAATTATTTAAATT
1 AAATTATTTAAATT
16283334 AAAT
1 AAAT
16283338 AAATAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AAATTATTTAAATT
Found at i:16287469 original size:17 final size:19
Alignment explanation
Indices: 16287434--16287471 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
16287424 CCTTAAGGGG
16287434 ACATAATATATATTATTTT
1 ACATAATATATATTATTTT
16287453 ACATAATATA-ATT-TTTT
1 ACATAATATATATTATTTT
16287470 AC
1 AC
16287472 TTCTAAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (19 bp):
ACATAATATATATTATTTT
Found at i:16290118 original size:48 final size:48
Alignment explanation
Indices: 16290062--16290155 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
16290052 TCATGTTAAG
16290062 ATTGTTTTCTTGAACTAAATGTGGCATGTGAATTTTTCCAATATCATA
1 ATTGTTTTCTTGAACTAAATGTGGCATGTGAATTTTTCCAATATCATA
16290110 ATTGTTTTCTTGAACTAAATGTGGCATGTGAATTTTTCCAATATCA
1 ATTGTTTTCTTGAACTAAATGTGGCATGTGAATTTTTCCAATATCA
16290156 GAACATTCCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (48 bp):
ATTGTTTTCTTGAACTAAATGTGGCATGTGAATTTTTCCAATATCATA
Found at i:16291599 original size:20 final size:18
Alignment explanation
Indices: 16291557--16291600 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
16291547 CCAGAAACAG
*
16291557 AAGAGGAAAAGATATTGA
1 AAGAAGAAAAGATATTGA
*
16291575 AAGAAGAAATAGATAATTTA
1 AAGAAGAAA-AGAT-ATTGA
16291595 AAGAAG
1 AAGAAG
16291601 GAGCTTGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 4 0.18
20 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.23, T:0.18
Consensus pattern (18 bp):
AAGAAGAAAAGATATTGA
Found at i:16294331 original size:10 final size:10
Alignment explanation
Indices: 16294296--16294339 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
16294286 TTCACATCCT
16294296 TCTCTC-AAC
1 TCTCTCAAAC
16294305 TCTCTCAAAC
1 TCTCTCAAAC
*
16294315 TCCCTCAAAC
1 TCTCTCAAAC
*
16294325 TTTCTC-AAC
1 TCTCTCAAAC
16294334 TCTCTC
1 TCTCTC
16294340 GTTTTAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.34
Consensus pattern (10 bp):
TCTCTCAAAC
Found at i:16296213 original size:32 final size:31
Alignment explanation
Indices: 16296171--16296236 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 31
16296161 TTCCTGCAAG
*
16296171 TACATATTTCCCTTCACCGACGTTCCATGCA
1 TACATATTTCCCTACACCGACGTTCCATGCA
*
16296202 TNACATATTTCCCTACCCCGACGTTCCATGCA
1 T-ACATATTTCCCTACACCGACGTTCCATGCA
16296234 TAC
1 TAC
16296237 TTCACCCCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 3 0.09
32 29 0.91
ACGTcount: A:0.23, C:0.36, G:0.09, T:0.30
Consensus pattern (31 bp):
TACATATTTCCCTACACCGACGTTCCATGCA
Found at i:16305377 original size:32 final size:32
Alignment explanation
Indices: 16305340--16305404 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
16305330 AGTCAAGCCC
16305340 TCGGCTGGATTGTTCATATAACGGAAGAGTGG
1 TCGGCTGGATTGTTCATATAACGGAAGAGTGG
16305372 TCGGCTGGATTGTTCATATAACGGAAGAGTGG
1 TCGGCTGGATTGTTCATATAACGGAAGAGTGG
16305404 T
1 T
16305405 TTATCTCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.29
Consensus pattern (32 bp):
TCGGCTGGATTGTTCATATAACGGAAGAGTGG
Found at i:16307091 original size:267 final size:266
Alignment explanation
Indices: 16306608--16307144 Score: 984
Period size: 267 Copynumber: 2.0 Consensus size: 266
16306598 GAGTACTTTG
*
16306608 AGGATCGTACCCAAGGGATACGAGTACTAGGTTAATTCTAAACCTAAGCACAAATAGATCTAATT
1 AGGATCGAACCCAAGGGATACGAGTACTAGGTTAATTCTAAACCTAAGCACAAATAGATCTAATT
*
16306673 AGTACTTTAGATAGATTATATTACGATGAAATATTAAGAAAGGTTTTTGGGATTTTTAATAATAA
66 AGTACTTTAGATAGATTATATTACAATGAAATATTAAGAAAGGTTTTTGGGATTTTTAATAATAA
16306738 AAAGAAAAGAATAAGTAACGAGAAATTAAATAATAGAATTTGTAAAATTTGAGCATGGGTGATTA
131 AAAGAAAAGAATAAGTAACGAGAAATTAAATAATAGAATTTGTAAAATTTGAGCATGGGTGATTA
* *
16306803 GCTCGCTTCGGTAATCATAACCAACTATCACTTTAGGTTTTCTTATTCAATCAACTAGTTGATAC
196 GCTCGCTTCGGTAATCATAACCAACTATCACTTTAGGGTTTCTTATTCAATCAACTAGTCGATAC
16306868 CCCAGA
261 CCCAGA
* *
16306874 AGGATCGAAACCCAAGGGATGCGAGTACTAGGTTAATTCTAAACCTAAGCACAAATATATCTAAT
1 AGGATCG-AACCCAAGGGATACGAGTACTAGGTTAATTCTAAACCTAAGCACAAATAGATCTAAT
16306939 TAGTACTTTAGATAGATTATATTACAATGAAATATTAAGAAAGGTTTTTGGGATTTTTAATAATA
65 TAGTACTTTAGATAGATTATATTACAATGAAATATTAAGAAAGGTTTTTGGGATTTTTAATAATA
* *
16307004 AAAATAAAAGAATAAGTAACGAGAAATTAAATAATAGAATTTGTCAAATTTGAGCATGGGTGATT
130 AAAAGAAAAGAATAAGTAACGAGAAATTAAATAATAGAATTTGTAAAATTTGAGCATGGGTGATT
*
16307069 AGCTCGCTTCGGTAATCATAACCAACTGTCACTTTAGGGTTTCTTATTCAATCAACTAGTCGATA
195 AGCTCGCTTCGGTAATCATAACCAACTATCACTTTAGGGTTTCTTATTCAATCAACTAGTCGATA
16307134 CCCCAGA
260 CCCCAGA
16307141 AGGA
1 AGGA
16307145 CCTTTCGATC
Statistics
Matches: 261, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
266 7 0.03
267 254 0.97
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (266 bp):
AGGATCGAACCCAAGGGATACGAGTACTAGGTTAATTCTAAACCTAAGCACAAATAGATCTAATT
AGTACTTTAGATAGATTATATTACAATGAAATATTAAGAAAGGTTTTTGGGATTTTTAATAATAA
AAAGAAAAGAATAAGTAACGAGAAATTAAATAATAGAATTTGTAAAATTTGAGCATGGGTGATTA
GCTCGCTTCGGTAATCATAACCAACTATCACTTTAGGGTTTCTTATTCAATCAACTAGTCGATAC
CCCAGA
Found at i:16331938 original size:44 final size:44
Alignment explanation
Indices: 16330710--16331926 Score: 1734
Period size: 44 Copynumber: 27.7 Consensus size: 44
16330700 GGTAAAACTA
* * *
16330710 TAAGTCATATCTCCCTGAACAACAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * * * * *
16330754 TAAGTCCTATCTCCTTGAGCATCAGTGGAATAGGTGGAAGACTA
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
** * *
16330798 TAAGTCCTATCTCCCTGGACAGTAGTGGAATAGGTGGAAGATTT
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16330842 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16330886 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16330930 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16330974 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331018 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331062 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331106 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331150 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331194 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331238 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331282 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331326 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331370 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331414 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331458 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331502 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331546 TAAGTCCTATCTCCCTAAACAACAGTGGAATAGATGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* *
16331590 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * * * * *
16331634 TAAGTCCTATCTCCCTAAACAACAGTGGAATAAGTAGAAAACTA
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * * * * *
16331678 TAAGTTCTATCTCTCTGAACAGTAGTGGAAGAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * * *
16331722 TAAGTCCTATCTCCCTGAACAGCAGTGGAGTAGGTGAAAGATTA
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * *
16331766 TAAGTCCTATCTCCCTGAACAGTAGTGGAATAGGTGGAAGGTTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
*
16331810 TAAGTCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* ** *
16331854 TAAGTCCTATATCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
1 TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
* * *
16331898 T-AGATCCTGTCTCCCTAAGCAGTAGTGGA
1 TAAG-TCCTATCTCCCTAAACAGCAGTGGA
16331927 GCAGATCGAA
Statistics
Matches: 1041, Mismatches: 131, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
43 2 0.00
44 1039 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (44 bp):
TAAGTCCTATCTCCCTAAACAGCAGTGGAATAGGTGGAAGATTG
Found at i:16331938 original size:88 final size:88
Alignment explanation
Indices: 16330710--16331915 Score: 2011
Period size: 88 Copynumber: 13.7 Consensus size: 88
16330700 GGTAAAACTA
* * ** * * * *
16330710 TAAGTCATATCTCCCTGAACAACAGTGGAATAGGTGGAAGATTGTAAGTCCTATCTCCTTGAGCA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
* * * *
16330775 TCAGTGGAATAGGTGGAAGACTA
66 ACAGTGGAATAGATGGAAGATTG
** * *
16330798 TAAGTCCTATCTCCCTGGACAGTAGTGGAATAGGTGGAAGATTTTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16330863 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16330886 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16330951 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16330974 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331039 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331062 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331127 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331150 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331215 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331238 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331303 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331326 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331391 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331414 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331479 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331502 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
16331567 ACAGTGGAATAGATGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
16331590 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
* * * *
16331655 ACAGTGGAATA-AGTAGAAAACTA
66 ACAGTGGAATAGA-TGGAAGATTG
* * * * *
16331678 TAAGTTCTATCTCTCTGAACAGTAGTGGAAGAGGTGGAAGGTTGTAAGTCCTATCTCCCTGAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
* * * * *
16331743 GCAGTGGAGTAGGTGAAAGATTA
66 ACAGTGGAATAGATGGAAGATTG
* *
16331766 TAAGTCCTATCTCCCTGAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTGAACA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
* *
16331831 GCAGTGGAATAGGTGGAAGATTG
66 ACAGTGGAATAGATGGAAGATTG
* ** * * * *
16331854 TAAGTCCTATATCCCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AGATCCTGTCTCCCTAA
1 TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAG-TCCTATCTCCCTAA
16331916 GCAGTAGTGG
Statistics
Matches: 1070, Mismatches: 45, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
87 3 0.00
88 1067 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (88 bp):
TAAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTGGAAGGTTGTAAGTCCTATCTCCCTAAACA
ACAGTGGAATAGATGGAAGATTG
Found at i:16333830 original size:68 final size:68
Alignment explanation
Indices: 16333741--16333876 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
16333731 TAAAATTATT
*
16333741 ATTGTTATTCTTGCTTAAATTCATTTATCGCTTGCTTATTACTGCTTAGTGTACGTTTGGATTAC
1 ATTGTTATTCTTGCTTAAATTCATTTATCGCTTGCTCATTACTGCTTAGTGTACGTTTGGATTAC
16333806 AAA
66 AAA
* *
16333809 ATTGTTATTCTTGCTTGAATTCATTTATCGCTTGCTCATTACTGCTTAGTGTACGTTTGTATTAC
1 ATTGTTATTCTTGCTTAAATTCATTTATCGCTTGCTCATTACTGCTTAGTGTACGTTTGGATTAC
16333874 AAA
66 AAA
16333877 TTATCCTCTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.47
Consensus pattern (68 bp):
ATTGTTATTCTTGCTTAAATTCATTTATCGCTTGCTCATTACTGCTTAGTGTACGTTTGGATTAC
AAA
Found at i:16342694 original size:7 final size:7
Alignment explanation
Indices: 16342682--16342724 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
16342672 CAATGAAATG
16342682 AAAATTC
1 AAAATTC
*
16342689 AAAATTTTG
1 AAAA--TTC
16342698 AAAATTC
1 AAAATTC
16342705 AAAATTC
1 AAAATTC
*
16342712 AAAATTT
1 AAAATTC
16342719 AAAATT
1 AAAATT
16342725 TTAATTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 25 0.81
9 6 0.19
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (7 bp):
AAAATTC
Found at i:16342699 original size:16 final size:16
Alignment explanation
Indices: 16342680--16342710 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16342670 ATCAATGAAA
16342680 TGAAAATTCAAAATTT
1 TGAAAATTCAAAATTT
16342696 TGAAAATTCAAAATT
1 TGAAAATTCAAAATT
16342711 CAAAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (16 bp):
TGAAAATTCAAAATTT
Found at i:16345287 original size:22 final size:22
Alignment explanation
Indices: 16345252--16345306 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
16345242 CGAGGATATA
16345252 CAATCTT--AGATATGA-TATG
1 CAATCTTAAAGATATGATTATG
*
16345271 CAATCTTAGAAGATATGATTTTG
1 CAATCTTA-AAGATATGATTATG
*
16345294 TAATCTTAAAGAT
1 CAATCTTAAAGAT
16345307 TTAATTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 7 0.23
22 13 0.43
23 10 0.33
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
CAATCTTAAAGATATGATTATG
Found at i:16345316 original size:21 final size:23
Alignment explanation
Indices: 16345259--16345316 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
16345249 ATACAATCTT
* *
16345259 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
16345281 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
16345303 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
16345317 GATACCCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 12 0.40
23 10 0.33
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:16345920 original size:16 final size:17
Alignment explanation
Indices: 16345901--16345943 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
16345891 TTTTTATGTT
16345901 TTATATATTTAT-TACC
1 TTATATATTTATGTACC
* *
16345917 TTATATATATATGTACG
1 TTATATATTTATGTACC
16345934 TATATATATT
1 T-TATATATT
16345944 ATACTTTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 11 0.50
17 4 0.18
18 7 0.32
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (17 bp):
TTATATATTTATGTACC
Found at i:16345928 original size:48 final size:48
Alignment explanation
Indices: 16345874--16346035 Score: 132
Period size: 48 Copynumber: 3.2 Consensus size: 48
16345864 TTTTTAAGTT
*
16345874 TATATATGTAATTATTATTTTTATGTTTTATATATTTATTACCTTATA
1 TATATATGTAATTATTATTTTTATGTTTTATATATTTATTAACTTATA
** * *
16345922 TATATATGTACGTATATATATTATACT-TTCTATACATATTT-TATAATTTCTATATA
1 TATATATGTAATTAT-TAT-TTTTA-TGTT-T-TATATATTTAT-TAA---CT-TATA
* * *
16345978 TATATATGTAATCATT-TTCTTTATGATCTATATATTTATTAACTTATA
1 TATATATGTAATTATTATT-TTTATGTTTTATATATTTATTAACTTATA
16346026 TATATATGTA
1 TATATATGTA
16346036 CGTATATATA
Statistics
Matches: 89, Mismatches: 12, Indels: 26
0.70 0.09 0.20
Matches are distributed among these distances:
48 27 0.30
49 5 0.06
50 6 0.07
51 3 0.03
52 21 0.24
53 3 0.03
54 5 0.06
55 3 0.03
56 16 0.18
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (48 bp):
TATATATGTAATTATTATTTTTATGTTTTATATATTTATTAACTTATA
Found at i:16345960 original size:20 final size:20
Alignment explanation
Indices: 16345937--16345982 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
16345927 ATGTACGTAT
*
16345937 ATATATTATACTTTCTATAC
1 ATATATTATAATTTCTATAC
* *
16345957 ATATTTTATAATTTCTATAT
1 ATATATTATAATTTCTATAC
16345977 ATATAT
1 ATATAT
16345983 ATGTAATCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (20 bp):
ATATATTATAATTTCTATAC
Found at i:16345979 original size:52 final size:51
Alignment explanation
Indices: 16345920--16346084 Score: 158
Period size: 52 Copynumber: 3.1 Consensus size: 51
16345910 TATTACCTTA
16345920 TATATATATGTACGTATATATATTATACTTTCTATACATATTTTATAATTTC
1 TATATATATGTACGTATATATATTATACTTTCTAT-CATATTTTATAATTTC
* * * * *
16345972 TATATATATATATGTA-ATCAT-TT-T-CTTTATGATCTATATATTTATTAACTTA
1 TATATATATGTACGTATAT-ATATTATACTTTCT-ATC-ATAT-TTTA-TAATTTC
16346024 TATATATATGTACGTATATATATATATTATACTTTCTATCCATATTTTATAATTTC
1 TATATATATGTACG----TATATATATTATACTTTCTAT-CATATTTTATAATTTC
16346080 TATAT
1 TATAT
16346085 GTATATTTTT
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
49 6 0.07
50 7 0.08
51 8 0.09
52 33 0.37
56 14 0.16
57 8 0.09
58 7 0.08
59 6 0.07
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.53
Consensus pattern (51 bp):
TATATATATGTACGTATATATATTATACTTTCTATCATATTTTATAATTTC
Found at i:16346001 original size:104 final size:105
Alignment explanation
Indices: 16345874--16346090 Score: 330
Period size: 104 Copynumber: 2.0 Consensus size: 105
16345864 TTTTTAAGTT
* * * *
16345874 TATATATGTAATTATTATTTTTATGTTTTATATATTTATTACCTTATATATATATGTACG-TATA
1 TATATATGTAATCATTATTTTTATGATCTATATATTTATTAACTTATATATATATGTACGATATA
16345938 TATATTATACTTTCTATACATATTTTATAATTTCTATATA
66 TATATTATACTTTCTATACATATTTTATAATTTCTATATA
16345978 TATATATGTAATCATT-TTCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATA
1 TATATATGTAATCATTATT-TTTATGATCTATATATTTATTAACTTATATATATATGTACG---A
* *
16346042 TATATATATTATACTTTCTATCCATATTTTATAATTTCTATATG
62 TATATATATTATACTTTCTATACATATTTTATAATTTCTATATA
16346086 TATAT
1 TATAT
16346091 TTTTCTTTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
103 2 0.02
104 53 0.52
108 47 0.46
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (105 bp):
TATATATGTAATCATTATTTTTATGATCTATATATTTATTAACTTATATATATATGTACGATATA
TATATTATACTTTCTATACATATTTTATAATTTCTATATA
Found at i:16346068 original size:20 final size:20
Alignment explanation
Indices: 16346045--16346082 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16346035 ACGTATATAT
*
16346045 ATATATTATACTTTCTATCC
1 ATATATTATAATTTCTATCC
*
16346065 ATATTTTATAATTTCTAT
1 ATATATTATAATTTCTAT
16346083 ATGTATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATATTATAATTTCTATCC
Found at i:16346138 original size:16 final size:18
Alignment explanation
Indices: 16346112--16346151 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
16346102 CTCATGAATG
*
16346112 TATTATATATAAA-TATA
1 TATTTTATATAAATTATA
16346129 T-TTTTATATAAATTATA
1 TATTTTATATAAATTATA
16346146 TATTTT
1 TATTTT
16346152 TTTTCATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 10 0.50
17 6 0.30
18 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTTATATAAATTATA
Found at i:16352662 original size:14 final size:15
Alignment explanation
Indices: 16352643--16352671 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
16352633 ACCTGTAGCA
16352643 AATAAAA-AAAAAAG
1 AATAAAAGAAAAAAG
16352657 AATAAAAGAAAAAAG
1 AATAAAAGAAAAAAG
16352672 GCAACAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AATAAAAGAAAAAAG
Found at i:16358179 original size:9 final size:9
Alignment explanation
Indices: 16358160--16358188 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
16358150 GGCTATAGTT
16358160 ACTAC-AAA
1 ACTACTAAA
16358168 ACTACTAAA
1 ACTACTAAA
16358177 ACTACTAAA
1 ACTACTAAA
16358186 ACT
1 ACT
16358189 TACTCATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (9 bp):
ACTACTAAA
Found at i:16358418 original size:54 final size:54
Alignment explanation
Indices: 16358323--16358447 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
16358313 TCAGAATTTT
* * * *
16358323 CCACAAAGGC-ATCTCTTTTAGAGTTCGCCATAAAGAATATTCTTTCAAAGTTTG
1 CCACAAAGGCTAT-TCTTTCAGAGTTCGCCACAAAGAATATTCTTTCAAAGCTCG
** ** *
16358377 CCACAAAGGCTATTCTTTCAGAGTTTTCCACAAAGGCTATTCTTTCAGAGCTCG
1 CCACAAAGGCTATTCTTTCAGAGTTCGCCACAAAGAATATTCTTTCAAAGCTCG
* *
16358431 TCAGAAAGGCTATTCTT
1 CCACAAAGGCTATTCTT
16358448 AATTGTCGTG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 57 0.97
55 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (54 bp):
CCACAAAGGCTATTCTTTCAGAGTTCGCCACAAAGAATATTCTTTCAAAGCTCG
Found at i:16358438 original size:27 final size:27
Alignment explanation
Indices: 16358322--16358447 Score: 107
Period size: 27 Copynumber: 4.7 Consensus size: 27
16358312 TTCAGAATTT
*
16358322 TCCACAAAGGC-ATCTCTTTTAGAGTTCG
1 TCCACAAAGGCTAT-TCTTTCAGAG-TCG
* ** * *
16358350 -CCATAAAGAATATTCTTTCAAAGT-T
1 TCCACAAAGGCTATTCTTTCAGAGTCG
**
16358375 TGCCACAAAGGCTATTCTTTCAGAGTTT
1 T-CCACAAAGGCTATTCTTTCAGAGTCG
16358403 TCCACAAAGGCTATTCTTTCAGAGCTCG
1 TCCACAAAGGCTATTCTTTCAGAG-TCG
*
16358431 T-CAGAAAGGCTATTCTT
1 TCCACAAAGGCTATTCTT
16358448 AATTGTCGTG
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.01
27 73 0.91
28 6 0.08
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (27 bp):
TCCACAAAGGCTATTCTTTCAGAGTCG
Found at i:16368027 original size:15 final size:15
Alignment explanation
Indices: 16368007--16368036 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16367997 CATACATTTC
16368007 TTTTTTAGTTTGAAA
1 TTTTTTAGTTTGAAA
16368022 TTTTTTAGTTTGAAA
1 TTTTTTAGTTTGAAA
16368037 CATGTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTTTTAGTTTGAAA
Found at i:16370531 original size:18 final size:18
Alignment explanation
Indices: 16370510--16370549 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
16370500 ACCACATATC
*
16370510 TCGCCCAAAATATAAACT
1 TCGCCCAAAAGATAAACT
*
16370528 TCG-CCGAAAGATAAACT
1 TCGCCCAAAAGATAAACT
16370545 TCGCC
1 TCGCC
16370550 AGTCGATCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.38, C:0.30, G:0.12, T:0.20
Consensus pattern (18 bp):
TCGCCCAAAAGATAAACT
Found at i:16377381 original size:148 final size:147
Alignment explanation
Indices: 16377108--16377402 Score: 326
Period size: 148 Copynumber: 2.0 Consensus size: 147
16377098 ACACCCCGTC
* * *
16377108 TGGCAACACAACTTTCAATGAATCTGGCGATCCCCTTACTGCATCTTTCAACGCACACTGTATTG
1 TGGCAACACAACTTTCAATGAATCTGGCGACCCCCTTACTACATCTTTCAACGCACACTATATTG
* * * * * * *
16377173 CTAAATTTTTTGCGAACTCCTTACCGATTTTCCTCCTTCGACGAACCCTTATTGGCGAGGCCAAA
66 CTAAATCTCTGGCGAACTCCTTACCGATTTTCCTCCTTCGACGAACCCCTACTAGCGAGGCAAAA
16377238 ACTT-TCAGGCCTTATCT
131 ACTTCT-AGGCCTTATCT
* * ** * *
16377255 TGGCAACATAACTTTCAATGAATCTGGTGAACCCCCTTACTACATCTTTCGGCGTAGACTATATT
1 TGGCAACACAACTTTCAATGAATCTGGCG-ACCCCCTTACTACATCTTTCAACGCACACTATATT
* * ** * *
16377320 -ATCAAATCTCTGGCGATCTCCTTATTGATTTTCCTCCATT-GATGAACCCCTACTAGTGAGGCA
65 GCT-AAATCTCTGGCGAACTCCTTACCGATTTTCCTCC-TTCGACGAACCCCTACTAGCGAGGCA
*
16377383 AAAACTTCTAGGCTTTATCT
128 AAAACTTCTAGGCCTTATCT
16377403 CGGGATGTTA
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
147 28 0.23
148 90 0.74
149 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (147 bp):
TGGCAACACAACTTTCAATGAATCTGGCGACCCCCTTACTACATCTTTCAACGCACACTATATTG
CTAAATCTCTGGCGAACTCCTTACCGATTTTCCTCCTTCGACGAACCCCTACTAGCGAGGCAAAA
ACTTCTAGGCCTTATCT
Found at i:16381347 original size:36 final size:35
Alignment explanation
Indices: 16381307--16381378 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
16381297 TAATGACCAT
* * * *
16381307 TGTGAAAGTGAATATGAGGGTATGTTTTTCATGCCA
1 TGTGAAAGTAAATAAGAGGATATG-TTATCATGCCA
* *
16381343 TGTGACAGTAAATAAGCGGATATGTTATCATGCCA
1 TGTGAAAGTAAATAAGAGGATATGTTATCATGCCA
16381378 T
1 T
16381379 ATATTGTGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAAGTAAATAAGAGGATATGTTATCATGCCA
Found at i:16394361 original size:15 final size:16
Alignment explanation
Indices: 16394329--16394359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16394319 GAATGCTTGT
16394329 GAAAAAAAAAAGAAAA
1 GAAAAAAAAAAGAAAA
*
16394345 GAAAAAAAGAAGAAA
1 GAAAAAAAAAAGAAA
16394360 GAGCATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
GAAAAAAAAAAGAAAA
Found at i:16414608 original size:29 final size:29
Alignment explanation
Indices: 16414575--16414630 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
16414565 ATGGTAACTA
* *
16414575 ATAAATATAACACCGACACATAGTGCCCG
1 ATAAATATAACACCAAAACATAGTGCCCG
16414604 ATAAATATAACACCAAAACATAGTGCC
1 ATAAATATAACACCAAAACATAGTGCC
16414631 TAATACAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.18
Consensus pattern (29 bp):
ATAAATATAACACCAAAACATAGTGCCCG
Found at i:16433795 original size:30 final size:30
Alignment explanation
Indices: 16433754--16433812 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
16433744 ATAAATTGGG
* * *
16433754 AGAGTTTTAGTTGAGCCACAAAAACTAGGA
1 AGAGTTCTAGTTAACCCACAAAAACTAGGA
*
16433784 AGAGTTCTAGTTAACCCATAAAAACTAGG
1 AGAGTTCTAGTTAACCCACAAAAACTAGG
16433813 GGATGGTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (30 bp):
AGAGTTCTAGTTAACCCACAAAAACTAGGA
Found at i:16434790 original size:30 final size:30
Alignment explanation
Indices: 16434754--16434823 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
16434744 TAAGCATTCG
16434754 AAATATTGGAAAGTCAAAGATATGGGTATC
1 AAATATTGGAAAGTCAAAGATATGGGTATC
16434784 AAATATTGGAAAGTCAAAGATATGGGTATC
1 AAATATTGGAAAGTCAAAGATATGGGTATC
16434814 AAGATATTGG
1 AA-ATATTGG
16434824 CATAATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
30 32 0.82
31 7 0.18
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
AAATATTGGAAAGTCAAAGATATGGGTATC
Found at i:16434800 original size:15 final size:15
Alignment explanation
Indices: 16434754--16434801 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
16434744 TAAGCATTCG
16434754 AAATATTGGAAAGTC
1 AAATATTGGAAAGTC
* **
16434769 AAAGATATGGGTA-TC
1 AAATAT-TGGAAAGTC
16434784 AAATATTGGAAAGTC
1 AAATATTGGAAAGTC
16434799 AAA
1 AAA
16434802 GATATGGGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.25
Consensus pattern (15 bp):
AAATATTGGAAAGTC
Found at i:16434815 original size:15 final size:15
Alignment explanation
Indices: 16434767--16434820 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
16434757 TATTGGAAAG
16434767 TCAAAGATATGGGTA
1 TCAAAGATATGGGTA
* **
16434782 TCAAATAT-TGGAAA
1 TCAAAGATATGGGTA
16434796 GTCAAAGATATGGGTA
1 -TCAAAGATATGGGTA
16434812 TC-AAGATAT
1 TCAAAGATAT
16434821 TGGCATAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
14 11 0.35
15 16 0.52
16 4 0.13
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (15 bp):
TCAAAGATATGGGTA
Found at i:16434819 original size:14 final size:14
Alignment explanation
Indices: 16434770--16434820 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
16434760 TGGAAAGTCA
16434770 AAGATATGGGTATC
1 AAGATATGGGTATC
**
16434784 AA-ATATTGGAAAGTC
1 AAGATA-TGGGTA-TC
16434799 AAAGATATGGGTATC
1 -AAGATATGGGTATC
16434814 AAGATAT
1 AAGATAT
16434821 TGGCATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 3 0.10
14 13 0.45
15 4 0.14
16 6 0.21
17 3 0.10
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (14 bp):
AAGATATGGGTATC
Found at i:16437583 original size:25 final size:25
Alignment explanation
Indices: 16437555--16437602 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
16437545 CCAAAAACAT
16437555 TTTGAAAAATATGTAGGAAAAATGG
1 TTTGAAAAATATGTAGGAAAAATGG
* *
16437580 TTTGAAAAATATTTAGGGAAAAT
1 TTTGAAAAATATGTAGGAAAAAT
16437603 ATCTCTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (25 bp):
TTTGAAAAATATGTAGGAAAAATGG
Found at i:16443413 original size:19 final size:20
Alignment explanation
Indices: 16443372--16443426 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
16443362 TAGCAAAACA
*
16443372 GAAAAAGGAAAGAAGAGCAATC
1 GAAAAAGGAAA-AA-AACAATC
*
16443394 GGAAAA-GAAAAAAACAATC
1 GAAAAAGGAAAAAAACAATC
16443413 GAAAAAGGAAAAAA
1 GAAAAAGGAAAAAA
16443427 GAAAACCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 11 0.38
20 9 0.31
21 4 0.14
22 5 0.17
ACGTcount: A:0.67, C:0.07, G:0.22, T:0.04
Consensus pattern (20 bp):
GAAAAAGGAAAAAAACAATC
Found at i:16455650 original size:17 final size:17
Alignment explanation
Indices: 16455628--16455662 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
16455618 ACTCTTTCTT
16455628 GGCATCCTACAGATGAA
1 GGCATCCTACAGATGAA
16455645 GGCATCCTACAGATGAA
1 GGCATCCTACAGATGAA
16455662 G
1 G
16455663 AAACCTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (17 bp):
GGCATCCTACAGATGAA
Found at i:16464967 original size:131 final size:131
Alignment explanation
Indices: 16464730--16464991 Score: 479
Period size: 131 Copynumber: 2.0 Consensus size: 131
16464720 TATCTACTCT
*
16464730 CTTCACAATTGCACAAAATGAACTTACTCAATCACACCCCATGATAATTTCCCTCACATTTGTAC
1 CTTCACAATTGCACAAAATGAACCTACTCAATCACACCCCATGATAATTTCCCTCACATTTGTAC
*
16464795 TTTGAAAACTCGATACTCTCACCACTAAATTCATCCCTTTGTGAATTTAACAAGTAAAACAACAA
66 TTTGAAAACTCGATACTCTCACCACTAAATTCATCCCTTTGTGAATTCAACAAGTAAAACAACAA
16464860 C
131 C
*
16464861 CTTCACAATTGCACAAAATGAACCTACTCAATCACACCCCATGATAATTTCCCTCACCTTTGTAC
1 CTTCACAATTGCACAAAATGAACCTACTCAATCACACCCCATGATAATTTCCCTCACATTTGTAC
* *
16464926 TTTGAAAACTCGATACTCTCACCACTAAATTCATCCTTTTGTGAATTCAACAAGTAAAGCAACAA
66 TTTGAAAACTCGATACTCTCACCACTAAATTCATCCCTTTGTGAATTCAACAAGTAAAACAACAA
16464991 C
131 C
16464992 ACAAGGTTTT
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 126 1.00
ACGTcount: A:0.36, C:0.28, G:0.07, T:0.29
Consensus pattern (131 bp):
CTTCACAATTGCACAAAATGAACCTACTCAATCACACCCCATGATAATTTCCCTCACATTTGTAC
TTTGAAAACTCGATACTCTCACCACTAAATTCATCCCTTTGTGAATTCAACAAGTAAAACAACAA
C
Found at i:16468130 original size:24 final size:24
Alignment explanation
Indices: 16468031--16468132 Score: 82
Period size: 24 Copynumber: 4.2 Consensus size: 24
16468021 TGTATAACGG
* * *
16468031 GAAGCTCTTGCGAGCTAATTATTGA
1 GAAGCTCATGCGAGCCAA-TATCGA
** *
16468056 GAAGCTCATATGAGCC-ATAACGA
1 GAAGCTCATGCGAGCCAATATCGA
* * * *
16468079 GAAGCTCAAGAGAGCCAA-ATTTGG
1 GAAGCTCATGCGAGCCAATA-TCGA
16468103 GAAGCTCATGCGAGCCAATATCGA
1 GAAGCTCATGCGAGCCAATATCGA
16468127 GAAGCT
1 GAAGCT
16468133 TTGGAGAACC
Statistics
Matches: 58, Mismatches: 16, Indels: 7
0.72 0.20 0.09
Matches are distributed among these distances:
23 18 0.31
24 27 0.47
25 13 0.22
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (24 bp):
GAAGCTCATGCGAGCCAATATCGA
Found at i:16472214 original size:15 final size:15
Alignment explanation
Indices: 16472196--16472225 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16472186 GTTGTTATTA
16472196 TTGTTGCTACTGTTG
1 TTGTTGCTACTGTTG
*
16472211 TTGTTGCTGCTGTTG
1 TTGTTGCTACTGTTG
16472226 CTGTCAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.30, T:0.53
Consensus pattern (15 bp):
TTGTTGCTACTGTTG
Found at i:16476795 original size:9 final size:9
Alignment explanation
Indices: 16476783--16476881 Score: 87
Period size: 9 Copynumber: 10.9 Consensus size: 9
16476773 TAAACTTACT
16476783 AAAATTATA
1 AAAATTATA
16476792 AAAATTATA
1 AAAATTATA
*
16476801 AAATATTAAA
1 AAA-ATTATA
16476811 AAAACTTATA
1 AAAA-TTATA
*
16476821 AATATTAT-
1 AAAATTATA
16476829 -AAATTATA
1 AAAATTATA
* *
16476837 AAAAATCTA
1 AAAATTATA
16476846 ATAAATTATA
1 A-AAATTATA
*
16476856 AAAATTA-C
1 AAAATTATA
16476864 AAAATTAATA
1 AAAATT-ATA
*
16476874 AAACTTAT
1 AAAATTAT
16476882 TTAAAATATT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
7 6 0.08
8 6 0.08
9 33 0.46
10 27 0.38
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:16476813 original size:19 final size:18
Alignment explanation
Indices: 16476786--16476876 Score: 80
Period size: 19 Copynumber: 4.9 Consensus size: 18
16476776 ACTTACTAAA
16476786 ATTATAAAAATTATAAAAT
1 ATTA-AAAAATTATAAAAT
16476805 ATTAAAAAAACTTAT-AAAT
1 ATT-AAAAAA-TTATAAAAT
* *
16476824 ATT-ATAAATTATAAAAA
1 ATTAAAAAATTATAAAAT
*
16476841 ATCTAATAAATTATAAAA-
1 AT-TAAAAAATTATAAAAT
*
16476859 ATTACAAAATTAATAAAA
1 ATTAAAAAATT-ATAAAA
16476877 CTTATTTAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 13
0.78 0.05 0.16
Matches are distributed among these distances:
16 4 0.06
17 16 0.26
18 9 0.15
19 28 0.45
20 5 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAAAATTATAAAAT
Found at i:16476814 original size:28 final size:27
Alignment explanation
Indices: 16476783--16476891 Score: 98
Period size: 29 Copynumber: 3.9 Consensus size: 27
16476773 TAAACTTACT
16476783 AAAATTATAAAAATTATAAAATATTAAA
1 AAAATTATAAAAATTATAAAATATT-AA
* *
16476811 AAAACTTATAAATATTATAAATTA-TAA
1 AAAA-TTATAAAAATTATAAAATATTAA
* *
16476838 AAAATCTA-ATAAATTATAAAA-ATTAC
1 AAAAT-TATAAAAATTATAAAATATTAA
*
16476864 AAAATTAATAAAACTTATTTAAAATATT
1 AAAATT-ATAAAAATTA--TAAAATATT
16476892 TAAACTTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
25 2 0.03
26 19 0.29
27 14 0.22
28 5 0.08
29 22 0.34
30 3 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (27 bp):
AAAATTATAAAAATTATAAAATATTAA
Found at i:16477384 original size:9 final size:9
Alignment explanation
Indices: 16477372--16477448 Score: 64
Period size: 9 Copynumber: 8.0 Consensus size: 9
16477362 TTTAAGATTT
16477372 TTTTTATAA
1 TTTTTATAA
16477381 TTTTATATCAA
1 TTTT-TAT-AA
* *
16477392 ATTTAATAA
1 TTTTTATAA
*
16477401 TTTTAATAA
1 TTTTTATAA
*
16477410 TTTTTATGA
1 TTTTTATAA
16477419 TTTTTATAGAA
1 TTTTTAT--AA
*
16477430 TTTTAATACA
1 TTTTTATA-A
16477440 TTTTTATAA
1 TTTTTATAA
16477449 AATTTTAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
9 30 0.55
10 13 0.24
11 12 0.22
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (9 bp):
TTTTTATAA
Found at i:16477409 original size:29 final size:29
Alignment explanation
Indices: 16477372--16477453 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
16477362 TTTAAGATTT
* * *
16477372 TTTTTATAATTTTATATCAAATTTA-ATAA
1 TTTTAATAATTTT-TATAAAATTTATAGAA
* **
16477401 TTTTAATAATTTTTATGATTTTTATAGAA
1 TTTTAATAATTTTTATAAAATTTATAGAA
16477430 TTTTAATACATTTTTATAAAATTT
1 TTTTAATA-ATTTTTATAAAATTT
16477454 TAAATATGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
28 8 0.19
29 23 0.53
30 12 0.28
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (29 bp):
TTTTAATAATTTTTATAAAATTTATAGAA
Found at i:16478716 original size:43 final size:42
Alignment explanation
Indices: 16478662--16479093 Score: 576
Period size: 43 Copynumber: 10.1 Consensus size: 42
16478652 TTTTTTTTAC
* **
16478662 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGA-AAA
* * **
16478705 AACGCCACTATAGACCGTGGTATTTAGCGGCGCTTACCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
**
16478747 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGA-AAA
* * **
16478790 AACGCCACTATAGACCGTGGTATTTAGCGGCGCTTACCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
** *
16478832 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAACCAACA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTT-AGGAAAA
*
16478875 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGCGAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGG-AAAA
* * *
16478918 AACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
*
16478960 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGCGAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGG-AAAA
* * *
16479003 AACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
* *
16479045 AACGCCACTATAGACCATGGTCTTTAGTGGCGCTTATGCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTA-GGAAAA
16479088 AACGCC
1 AACGCC
16479094 GCTAATTTTG
Statistics
Matches: 347, Mismatches: 37, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
42 148 0.43
43 199 0.57
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (42 bp):
AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
Found at i:16478731 original size:85 final size:84
Alignment explanation
Indices: 16478662--16479093 Score: 558
Period size: 85 Copynumber: 5.1 Consensus size: 84
16478652 TTTTTTTTAC
* * *
16478662 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAAAACGCCACTATAGACCGTGGTA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAA-AAAAACGCCACTATAGACCATGGTC
*
16478727 TTTAGCGGCGCTTACCAAAA
65 TTTAGCGGCGTTTACCAAAA
* *
16478747 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAAAACGCCACTATAGACCGTGGTA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAA-AAAAACGCCACTATAGACCATGGTC
*
16478812 TTTAGCGGCGCTTACCAAAA
65 TTTAGCGGCGTTTACCAAAA
* *
16478832 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAACCAACAAACGCCACTATAGACCATGGTC
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAA-AAAAAAACGCCACTATAGACCATGGTC
* * *
16478897 TTTAGCGGCGCTTAGGCGAAA
65 TTTAGCGGCGTTTA-CCAAAA
* * * **
16478918 AACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAAAACGCCACTATAGACCATGGTCT
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAAAAAAACGCCACTATAGACCATGGTCT
* * *
16478983 TTAGCGGCGCTTAGGCGAAA
66 TTAGCGGCGTTTA-CCAAAA
* * * **
16479003 AACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAAAACGCCACTATAGACCATGGTCT
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAAAAAAACGCCACTATAGACCATGGTCT
* * *
16479068 TTAGTGGCGCTTATGCAAAA
66 TTAGCGGCGTTTA-CCAAAA
16479088 AACGCC
1 AACGCC
16479094 GCTAATTTTG
Statistics
Matches: 328, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
85 290 0.88
86 38 0.12
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (84 bp):
AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAAAAAAACGCCACTATAGACCATGGTCT
TTAGCGGCGTTTACCAAAA
Found at i:16478883 original size:128 final size:126
Alignment explanation
Indices: 16478662--16479093 Score: 605
Period size: 128 Copynumber: 3.4 Consensus size: 126
16478652 TTTTTTTTAC
* ** * *
16478662 AACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAAAACGCCACTATAGACCGTGGTA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGCA-AAAAACGCCACTATAGACCATGGTC
**
16478727 TTTAGCGGCGCTT-ACCAAAAAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAAATAAA
65 TTTAGCGGCGCTTAACC-AAAAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGA-AAA
* * *
16478790 AACGCCACTATAGACCGTGGTATTTAGCGGCGCTTACCAAAAAACGCCACTATAGACCATGGTCT
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGCAAAAAACGCCACTATAGACCATGGTCT
*
16478855 TTAGCGGCGCTTAACCAACAAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGCGAAA
66 TTAGCGGCGCTTAACCAA-AAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGG-AAAA
* * * *
16478918 AACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAAAACGCCACTATAGACCATGGTCT
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGCAAAAAACGCCACTATAGACCATGGTCT
* * * * *
16478983 TTAGCGGCGCTTAGGCGAAAAACGTCATTATAGACCATGGTCTTTCGCGGCGCTTAGGAAAA
66 TTAGCGGCGCTTA-ACCAAAAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
*
16479045 AACGCCACTATAGACCATGGTCTTTAGTGGCGCTTATGCAAAAAACGCC
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTA-GCAAAAAACGCC
16479094 GCTAATTTTG
Statistics
Matches: 271, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
127 73 0.27
128 195 0.72
129 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (126 bp):
AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGCAAAAAACGCCACTATAGACCATGGTCT
TTAGCGGCGCTTAACCAAAAACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGAAAA
Done.