Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 59 of 161
Found at i:18490818 original size:45 final size:45
Alignment explanation
Indices: 18490764--18490936 Score: 260
Period size: 45 Copynumber: 3.9 Consensus size: 45
18490754 ATACTAGAAA
* *
18490764 CGAGCAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTAT
* *
18490809 CAAGTAAGACCATGACTGAAAGATGTTATGACATCACGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTAT
* *
18490854 CGAGTAAGACCATGACTGAAAGATGTTATGGCATTATGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTAT
*
18490899 CGAGTAAGA-CAT-AGCTGAAAGATGCTATGGCATCACGA
1 CGAGTAAGACCATGA-CTGAAAGATGTTATGGCATCACGA
18490937 ATCAAATGAA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
43 1 0.01
44 24 0.21
45 91 0.78
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (45 bp):
CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTAT
Found at i:18493972 original size:15 final size:15
Alignment explanation
Indices: 18493952--18493984 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
18493942 AAAATAAAGT
*
18493952 AATTTTAGATATGAA
1 AATTTTAGAAATGAA
18493967 AATTTTAGAAATGAA
1 AATTTTAGAAATGAA
18493982 AAT
1 AAT
18493985 GTGAGGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (15 bp):
AATTTTAGAAATGAA
Found at i:18495831 original size:23 final size:22
Alignment explanation
Indices: 18495783--18495827 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18495773 AGAGTCTCAC
* *
18495783 ACTACCCTTAAAGGGCTTGCAT
1 ACTACCCGTAAAAGGCTTGCAT
*
18495805 ACTACCCGTAAAAGGCTTTCAT
1 ACTACCCGTAAAAGGCTTGCAT
18495827 A
1 A
18495828 ACTATGTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (22 bp):
ACTACCCGTAAAAGGCTTGCAT
Found at i:18499866 original size:15 final size:15
Alignment explanation
Indices: 18499841--18499878 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
18499831 CCATAAAATA
18499841 TTTCAATCGATAACCT
1 TTTC-ATCGATAACCT
18499857 TTTCATCGATAACCT
1 TTTCATCGATAACCT
18499872 TTTCATC
1 TTTCATC
18499879 CTTTTCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (15 bp):
TTTCATCGATAACCT
Found at i:18501045 original size:12 final size:13
Alignment explanation
Indices: 18501017--18501045 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18501007 TAATATGACC
18501017 TAAATAAATACTT
1 TAAATAAATACTT
18501030 TAAATAAATA-TT
1 TAAATAAATACTT
18501042 TAAA
1 TAAA
18501046 CCCTAACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATAAATACTT
Found at i:18510790 original size:18 final size:18
Alignment explanation
Indices: 18510767--18510806 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
18510757 AACAACAACA
18510767 AAAACAGAAAAAAGAAAG
1 AAAACAGAAAAAAGAAAG
* *
18510785 AAAACAGAAAAGAGGAAG
1 AAAACAGAAAAAAGAAAG
18510803 AAAA
1 AAAA
18510807 AAAGGAGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.75, C:0.05, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAACAGAAAAAAGAAAG
Found at i:18514143 original size:55 final size:55
Alignment explanation
Indices: 18514059--18514169 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
18514049 TTATTTCTCC
18514059 AAAATGTTAAAAGGTATTACATGATATTAGTATGTACAAAATTTTATAATTGTGA
1 AAAATGTTAAAAGGTATTACATGATATTAGTATGTACAAAATTTTATAATTGTGA
18514114 AAAATGTTAAAAGGTATTACATGATATTAGTATGTACAAAATTTTATAATTGTGA
1 AAAATGTTAAAAGGTATTACATGATATTAGTATGTACAAAATTTTATAATTGTGA
18514169 A
1 A
18514170 TCGAAAAATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (55 bp):
AAAATGTTAAAAGGTATTACATGATATTAGTATGTACAAAATTTTATAATTGTGA
Found at i:18535575 original size:18 final size:19
Alignment explanation
Indices: 18535539--18535576 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
18535529 AAAATAATCG
18535539 AATAATAACCAATGAAAGA
1 AATAATAACCAATGAAAGA
18535558 AATAAT-ACCTAA-GAAAGA
1 AATAATAACC-AATGAAAGA
18535576 A
1 A
18535577 TCCACCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.63, C:0.11, G:0.11, T:0.16
Consensus pattern (19 bp):
AATAATAACCAATGAAAGA
Found at i:18537268 original size:40 final size:40
Alignment explanation
Indices: 18537216--18537299 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
18537206 AAATCTCAAC
18537216 AAAAATAGAGTCAATAAAACGGGAAAGAGTCACAACGAAA
1 AAAAATAGAGTCAATAAAACGGGAAAGAGTCACAACGAAA
* ** *
18537256 AAAAATAGAGTCAATAAAACGGGATAGTTTCACAATGAAA
1 AAAAATAGAGTCAATAAAACGGGAAAGAGTCACAACGAAA
18537296 AAAA
1 AAAA
18537300 TGTGTTATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.57, C:0.11, G:0.18, T:0.14
Consensus pattern (40 bp):
AAAAATAGAGTCAATAAAACGGGAAAGAGTCACAACGAAA
Found at i:18538155 original size:6 final size:6
Alignment explanation
Indices: 18538144--18538206 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
18538134 GAAGTCTAAG
* * * *
18538144 AAATAA AAATAAA ACAACTAA AAATTA AAATTA AAATTA AAATAA AATTAA
1 AAATAA AAAT-AA A-AA-TAA AAATAA AAATAA AAATAA AAATAA AAATAA
18538195 AAAT-A AAATAA A
1 AAATAA AAATAA A
18538207 CAAAACAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 5 0.10
6 33 0.67
7 5 0.10
8 5 0.10
9 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (6 bp):
AAATAA
Found at i:18538181 original size:12 final size:11
Alignment explanation
Indices: 18538164--18538203 Score: 62
Period size: 12 Copynumber: 3.5 Consensus size: 11
18538154 AAAACAACTA
18538164 AAAATTAAAATT
1 AAAATTAAAA-T
18538176 AAAATTAAAAT
1 AAAATTAAAAT
18538187 AAAATTAAAAAT
1 AAAATT-AAAAT
18538199 AAAAT
1 AAAAT
18538204 AAACAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 7 0.26
12 20 0.74
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:18538191 original size:17 final size:17
Alignment explanation
Indices: 18538164--18538206 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
18538154 AAAACAACTA
*
18538164 AAAATTAAAATTAAAATT
1 AAAA-TAAAATTAAAAAT
18538182 AAAATAAAATTAAAAAT
1 AAAATAAAATTAAAAAT
18538199 AAAATAAA
1 AAAATAAA
18538207 CAAAACAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAAAATTAAAAAT
Found at i:18539581 original size:11 final size:11
Alignment explanation
Indices: 18539565--18539601 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
18539555 AACATGATAT
18539565 GAATACTAAAA
1 GAATACTAAAA
18539576 GAATACTAAAAA
1 GAATACT-AAAA
*
18539588 TAATACTAAAA
1 GAATACTAAAA
18539599 GAA
1 GAA
18539602 ACAAGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.19
Consensus pattern (11 bp):
GAATACTAAAA
Found at i:18539592 original size:12 final size:12
Alignment explanation
Indices: 18539565--18539598 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
18539555 AACATGATAT
18539565 GAATACT-AAAA
1 GAATACTAAAAA
18539576 GAATACTAAAAA
1 GAATACTAAAAA
*
18539588 TAATACTAAAA
1 GAATACTAAAA
18539599 GAAACAAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.65, C:0.09, G:0.06, T:0.21
Consensus pattern (12 bp):
GAATACTAAAAA
Found at i:18539820 original size:29 final size:29
Alignment explanation
Indices: 18539783--18539847 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
18539773 AAGACGAATG
* * * * *
18539783 ATAAGAAAAGACAATAGAAATAAATAAGA
1 ATAAAAAAAGAAAAAAGAAAAAAATAAAA
* *
18539812 ATAAAAAAATAAAAAATAAAAAAATAAAA
1 ATAAAAAAAGAAAAAAGAAAAAAATAAAA
18539841 ATAAAAA
1 ATAAAAA
18539848 TCTAAAAAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (29 bp):
ATAAAAAAAGAAAAAAGAAAAAAATAAAA
Found at i:18539824 original size:8 final size:8
Alignment explanation
Indices: 18539800--18539841 Score: 59
Period size: 8 Copynumber: 5.1 Consensus size: 8
18539790 AAGACAATAG
18539800 AAATAAATA
1 AAATAAA-A
18539809 AGAATAAAA
1 A-AATAAAA
18539818 AAAT-AAA
1 AAATAAAA
18539825 AAATAAAA
1 AAATAAAA
18539833 AAATAAAA
1 AAATAAAA
18539841 A
1 A
18539842 TAAAAATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.23
8 15 0.48
9 3 0.10
10 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (8 bp):
AAATAAAA
Found at i:18539827 original size:7 final size:7
Alignment explanation
Indices: 18539815--18539847 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
18539805 AATAAGAATA
18539815 AAAAAAT
1 AAAAAAT
18539822 AAAAAAT
1 AAAAAAT
18539829 AAAAAA-
1 AAAAAAT
18539835 ATAAAAAT
1 A-AAAAAT
18539843 AAAAA
1 AAAAA
18539848 TCTAAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 22 0.92
8 1 0.04
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:18539855 original size:14 final size:14
Alignment explanation
Indices: 18539804--18539847 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
18539794 CAATAGAAAT
*
18539804 AAATAAGAATAAAA
1 AAATAAAAATAAAA
18539818 AAATAAAAAATAAAA
1 AAAT-AAAAATAAAA
18539833 AAATAAAAATAAAA
1 AAATAAAAATAAAA
18539847 A
1 A
18539848 TCTAAAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (14 bp):
AAATAAAAATAAAA
Found at i:18545179 original size:21 final size:21
Alignment explanation
Indices: 18545155--18545212 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
18545145 AGCTAAAAAG
* *
18545155 AGCTTAACAAAAGCTTGTAAA
1 AGCTGAACAAAAGCTCGTAAA
** *
18545176 AGCTGAATTAAAGCTCGTAAG
1 AGCTGAACAAAAGCTCGTAAA
*
18545197 AGCTGAACAGAAGCTC
1 AGCTGAACAAAAGCTC
18545213 AAAAGAGCTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (21 bp):
AGCTGAACAAAAGCTCGTAAA
Found at i:18545218 original size:21 final size:21
Alignment explanation
Indices: 18545140--18545221 Score: 60
Period size: 21 Copynumber: 3.9 Consensus size: 21
18545130 CAAACACACC
* *
18545140 ACAGAAGCTAAAAAGAGCTTA
1 ACAGAAGCTCAAAAGAGCTGA
* **
18545161 ACAAAAGCTTGTAAA-AGCTGA
1 ACAGAAGC-TCAAAAGAGCTGA
* **
18545182 ATTA-AAGCTCGTAAGAGCTGA
1 A-CAGAAGCTCAAAAGAGCTGA
18545203 ACAGAAGCTCAAAAGAGCT
1 ACAGAAGCTCAAAAGAGCT
18545222 AATCCACTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
20 4 0.09
21 37 0.80
22 5 0.11
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (21 bp):
ACAGAAGCTCAAAAGAGCTGA
Found at i:18545643 original size:19 final size:19
Alignment explanation
Indices: 18545619--18545658 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
18545609 TTTAGATAGT
18545619 AAGACAATTTATTTTATGC
1 AAGACAATTTATTTTATGC
18545638 AAGACAATTTATTTTATGC
1 AAGACAATTTATTTTATGC
18545657 AA
1 AA
18545659 TTTAGTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (19 bp):
AAGACAATTTATTTTATGC
Found at i:18551825 original size:27 final size:27
Alignment explanation
Indices: 18551787--18551859 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
18551777 GCATCTTGTC
* *
18551787 AGCCTTTGTGGTGTACTTTGTATAAAT
1 AGCCTTTGTGGTGTACTCTGCATAAAT
**
18551814 AGCCTTTGTGGTGTACTCTGCATGGAT
1 AGCCTTTGTGGTGTACTCTGCATAAAT
* *
18551841 TGCCTTTGTGGCGTACTCT
1 AGCCTTTGTGGTGTACTCT
18551860 AATTAGATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.15, C:0.18, G:0.26, T:0.41
Consensus pattern (27 bp):
AGCCTTTGTGGTGTACTCTGCATAAAT
Found at i:18551868 original size:27 final size:27
Alignment explanation
Indices: 18551788--18551870 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
18551778 CATCTTGTCA
* * * * *
18551788 GCCTTTGTGGTGTACTTTGTATAAATA
1 GCCTTTGTGGCGTACTCTGAATAGATT
* * *
18551815 GCCTTTGTGGTGTACTCTGCATGGATT
1 GCCTTTGTGGCGTACTCTGAATAGATT
18551842 GCCTTTGTGGCGTACTCT-AATTAGATT
1 GCCTTTGTGGCGTACTCTGAA-TAGATT
18551869 GC
1 GC
18551871 TTTAGAGTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.02
27 46 0.98
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (27 bp):
GCCTTTGTGGCGTACTCTGAATAGATT
Found at i:18556746 original size:43 final size:43
Alignment explanation
Indices: 18555597--18556742 Score: 1843
Period size: 43 Copynumber: 26.7 Consensus size: 43
18555587 CTAAAGTTCA
* * *
18555597 TGACCTTTAGCGGCGC--TT-CCAGAAAAATGCCGCTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACAT--CGCTATAGACCT
* *
18555639 TGACCTTTAGCGGCGCTTTTTCCAC-AA-ATGCAGCTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACAT-C-GCTATAGACCT
* ** * *
18555682 TGAACTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
* * * ** *
18555725 TGACCTGTAGCAGCGCTTTTCCCAAAAACGCCGCTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555768 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555811 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555854 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555897 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555940 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18555983 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556026 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556069 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556112 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556155 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556198 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556241 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556284 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556327 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556370 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556413 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556456 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
18556499 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
** * *
18556542 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
* * * ** *
18556585 TGACCTGTAGCAGCGCTTTTCCCAAAAACGCCGCTATAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
* ** * *
18556628 TGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTACAGACCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
* * ** ** * *
18556671 TGACCTTGAGCGGCGTTTTTTTCACAAACGCCGCTATAGATCA
1 TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
* * *
18556714 TGACTTTTAGTGGCGCTTTTTCCACAAAC
1 TGACCTTTAGCGGCGCTTTTCCCACAAAC
18556743 GCCGGTAATT
Statistics
Matches: 1057, Mismatches: 41, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
42 17 0.02
43 1030 0.97
44 7 0.01
45 3 0.00
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (43 bp):
TGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTATAGACCT
Found at i:18558138 original size:25 final size:25
Alignment explanation
Indices: 18558110--18558592 Score: 219
Period size: 25 Copynumber: 19.3 Consensus size: 25
18558100 TAAGTATAAT
* *
18558110 TAAGCTATGTAAGTCATGTATTATG
1 TAAGTTATGTAAGTTATGTATTATG
* * *
18558135 TAAGCTATGTAAGTTGTGTATTGTG
1 TAAGTTATGTAAGTTATGTATTATG
*
18558160 TAAGCTATGT-A-TTATGTATGTTATG
1 TAAGTTATGTAAGTTATGTA--TTATG
* * *
18558185 TAAGTTGTGT-AG-AATGTAAGGTATG
1 TAAGTTATGTAAGTTATGT-A-TTATG
** *
18558210 TAAGTTATATATGTAAGTTGGGTATAATG
1 TAAG---T-TATGTAAGTTATGTATTATG
*
18558239 T-A--T-T-TAAGTTATGTAACT-TG
1 TAAGTTATGTAAGTTATGT-ATTATG
*
18558259 TGAGTTATGTAAGTTATGTATTATG
1 TAAGTTATGTAAGTTATGTATTATG
*
18558284 TAAGTTATATAAGTTATGTATTATG
1 TAAGTTATGTAAGTTATGTATTATG
* **
18558309 TAAGTTATGT-A--TA-ATATTAAA
1 TAAGTTATGTAAGTTATGTATTATG
* *
18558330 TAAGTTATGTAAGTTGTGTATAATG
1 TAAGTTATGTAAGTTATGTATTATG
*
18558355 TAAGTTATGTAAGTAATGTATTATG
1 TAAGTTATGTAAGTTATGTATTATG
* *
18558380 TAAGTTGTGTATA-ATAT-TAATTTATG
1 TAAGTTATGTA-AGTTATGT-A-TTATG
*
18558406 TAAGTTGTGT-A--TACTGTAAGTTATG
1 TAAGTTATGTAAGTTA-TGT-A-TTATG
*
18558431 AAAGTTATGT-A-TTATGTAAGTTATG
1 TAAGTTATGTAAGTTATGT-A-TTATG
* ** *
18558456 TATAATATTAAATAAGTTATGTAAGTTGTG
1 --TAA-GTTATGTAAGTTATGT-A-TTATG
* *
18558486 T-A-TAATGTAAGTTATGTAAGTAATG
1 TAAGTTATGTAAGTTATGT-A-TTATG
*
18558511 T-A-TTATGTAAGTTGTGTATAATAT-
1 TAAGTTATGTAAGTTATGTAT--TATG
* *
18558535 TAATTTATGTAAGTTGTGTA-TACTG
1 TAAGTTATGTAAGTTATGTATTA-TG
*
18558560 TAAGTTATGAAAGTTATGTATTATG
1 TAAGTTATGTAAGTTATGTATTATG
18558585 TAAGTTAT
1 TAAGTTAT
18558593 TTATGTAATA
Statistics
Matches: 363, Mismatches: 56, Indels: 78
0.73 0.11 0.16
Matches are distributed among these distances:
20 11 0.03
21 18 0.05
22 4 0.01
23 12 0.03
24 12 0.03
25 232 0.64
26 37 0.10
27 3 0.01
28 7 0.02
29 9 0.02
30 16 0.04
31 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (25 bp):
TAAGTTATGTAAGTTATGTATTATG
Found at i:18558154 original size:9 final size:9
Alignment explanation
Indices: 18558110--18558677 Score: 231
Period size: 9 Copynumber: 66.7 Consensus size: 9
18558100 TAAGTATAAT
*
18558110 TAAGCTATG
1 TAAGTTATG
*
18558119 TAAGTCATG
1 TAAGTTATG
18558128 T-A-TTATG
1 TAAGTTATG
*
18558135 TAAGCTATG
1 TAAGTTATG
*
18558144 TAAGTTGTG
1 TAAGTTATG
*
18558153 T-A-TTGTG
1 TAAGTTATG
*
18558160 TAAGCTATG
1 TAAGTTATG
18558169 T-A-TTATG
1 TAAGTTATG
*
18558176 TATGTTATG
1 TAAGTTATG
*
18558185 TAAGTTGTG
1 TAAGTTATG
*
18558194 T-AG-AATG
1 TAAGTTATG
*
18558201 TAAGGTATG
1 TAAGTTATG
18558210 TAAGTTA--
1 TAAGTTATG
18558217 T-A--TATG
1 TAAGTTATG
**
18558223 TAAGTTGGG
1 TAAGTTATG
* *
18558232 TATAATGTATT
1 TA-AGT-TATG
18558243 TAAGTTATG
1 TAAGTTATG
*
18558252 TAA-CT-TG
1 TAAGTTATG
*
18558259 TGAGTTATG
1 TAAGTTATG
18558268 TAAGTTATG
1 TAAGTTATG
18558277 T-A-TTATG
1 TAAGTTATG
*
18558284 TAAGTTATA
1 TAAGTTATG
18558293 TAAGTTATG
1 TAAGTTATG
18558302 T-A-TTATG
1 TAAGTTATG
18558309 TAAGTTATG
1 TAAGTTATG
* **
18558318 TATAATATTAAA
1 --TAA-GTTATG
18558330 TAAGTTATG
1 TAAGTTATG
*
18558339 TAAGTTGTG
1 TAAGTTATG
*
18558348 T-A-TAATG
1 TAAGTTATG
18558355 TAAGTTATG
1 TAAGTTATG
*
18558364 TAAGTAATG
1 TAAGTTATG
18558373 T-A-TTATG
1 TAAGTTATG
*
18558380 TAAGTTGTG
1 TAAGTTATG
*
18558389 TATA-ATAT-
1 TA-AGTTATG
*
18558397 TAATTTATG
1 TAAGTTATG
*
18558406 TAAGTTGTG
1 TAAGTTATG
18558415 T-A--TACTG
1 TAAGTTA-TG
18558422 TAAGTTATG
1 TAAGTTATG
*
18558431 AAAGTTATG
1 TAAGTTATG
18558440 T-A-TTATG
1 TAAGTTATG
18558447 TAAGTTATG
1 TAAGTTATG
* **
18558456 TATAATATTAAA
1 --TAA-GTTATG
18558468 TAAGTTATG
1 TAAGTTATG
*
18558477 TAAGTTGTG
1 TAAGTTATG
*
18558486 T-A-TAATG
1 TAAGTTATG
18558493 TAAGTTATG
1 TAAGTTATG
*
18558502 TAAGTAATG
1 TAAGTTATG
18558511 T-A-TTATG
1 TAAGTTATG
*
18558518 TAAGTTGTG
1 TAAGTTATG
*
18558527 TATA-ATAT-
1 TA-AGTTATG
*
18558535 TAATTTATG
1 TAAGTTATG
*
18558544 TAAGTTGTG
1 TAAGTTATG
18558553 T-A--TACTG
1 TAAGTTA-TG
18558560 TAAGTTATG
1 TAAGTTATG
*
18558569 AAAGTTATG
1 TAAGTTATG
18558578 T-A-TTATG
1 TAAGTTATG
*
18558585 TAAGTTATT
1 TAAGTTATG
* *
18558594 TATG-TA-A
1 TAAGTTATG
*
18558601 TAAGTTGTG
1 TAAGTTATG
*
18558610 T-A-TCATG
1 TAAGTTATG
18558617 TAAGTTATG
1 TAAGTTATG
* *
18558626 TAGGCTATG
1 TAAGTTATG
* *
18558635 TAGGCTATG
1 TAAGTTATG
18558644 T-A-TTATG
1 TAAGTTATG
18558651 TAAGTTATTATG
1 TAAG---TTATG
18558663 TAAGTTATG
1 TAAGTTATG
*
18558672 CAAGTT
1 TAAGTT
18558678 TATATATAAG
Statistics
Matches: 411, Mismatches: 86, Indels: 124
0.66 0.14 0.20
Matches are distributed among these distances:
4 2 0.00
6 4 0.01
7 87 0.21
8 47 0.11
9 231 0.56
10 16 0.04
11 9 0.02
12 15 0.04
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:18558162 original size:41 final size:41
Alignment explanation
Indices: 18558117--18558195 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 41
18558107 AATTAAGCTA
18558117 TGTAAG-TCATGTATTATGTAAGCTATGTAAGTTGTGTATTG
1 TGTAAGCT-ATGTATTATGTAAGCTATGTAAGTTGTGTATTG
* *
18558158 TGTAAGCTATGTATTATGTATGTTATGTAAGTTGTGTA
1 TGTAAGCTATGTATTATGTAAGCTATGTAAGTTGTGTA
18558196 GAATGTAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.27, C:0.04, G:0.24, T:0.46
Consensus pattern (41 bp):
TGTAAGCTATGTATTATGTAAGCTATGTAAGTTGTGTATTG
Found at i:18558184 original size:16 final size:16
Alignment explanation
Indices: 18558140--18558658 Score: 142
Period size: 16 Copynumber: 31.8 Consensus size: 16
18558130 TTATGTAAGC
*
18558140 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* *
18558156 TGTGTAAGCTATGTAT
1 TATGTAAGTTATGTAT
*
18558172 TATGTATGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* * *
18558190 TGTGT-AG-AATGTAAGG
1 TATGTAAGTTATGT-A-T
18558206 TATGTAAGTTA--TA-
1 TATGTAAGTTATGTAT
**
18558219 TATGTAAGTTGGGTAT
1 TATGTAAGTTATGTAT
* * *
18558235 AATGT-ATTTAAG--T
1 TATGTAAGTTATGTAT
* *
18558248 TATGTAACTTGTG-AGT
1 TATGTAAGTTATGTA-T
18558264 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
18558280 TATGTAAG---T-TA-
1 TATGTAAGTTATGTAT
18558291 TA--TAAGTTATGTAT
1 TATGTAAGTTATGTAT
18558305 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
18558321 AATATTAAATAAGTTATGTAAGT
1 --TA-T--GTAAGTTATGT-A-T
* *
18558344 TGTGT-A-TAATGTAAGT
1 TATGTAAGTTATGT-A-T
*
18558360 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
18558376 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* *
18558392 AATAT-TAATTTATGTAAG
1 --TATGTAAGTTATGT-AT
18558410 T-TGT--GTATACTGTAAGT
1 TATGTAAGT-TA-TGT-A-T
*
18558427 TATGAAAGTTATGTAT
1 TATGTAAGTTATGTAT
18558443 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
18558459 AATATTAAATAAGTTATGTAAGT
1 --TA-T--GTAAGTTATGT-A-T
* *
18558482 TGTGT-A-TAATGTAAGT
1 TATGTAAGTTATGT-A-T
*
18558498 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
18558514 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* *
18558530 AATAT-TAATTTATGTAAG
1 --TATGTAAGTTATGT-AT
18558548 T-TGT--GTATACTGTAAGT
1 TATGTAAGT-TA-TGT-A-T
*
18558565 TATGAAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
18558581 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
* *
18558597 GTA-ATAAGTTGTGTAT
1 -TATGTAAGTTATGTAT
* *
18558613 CATGTAAGTTATGTAGGC
1 TATGTAAGTTATGTA--T
* *
18558631 TATGTAGGCTATGTAT
1 TATGTAAGTTATGTAT
18558647 TATGTAAGTTAT
1 TATGTAAGTTAT
18558659 TATGTAAGTT
Statistics
Matches: 378, Mismatches: 65, Indels: 120
0.67 0.12 0.21
Matches are distributed among these distances:
9 4 0.01
11 2 0.01
12 3 0.01
13 18 0.05
14 8 0.02
15 14 0.04
16 204 0.54
17 33 0.09
18 54 0.14
19 6 0.02
20 6 0.02
21 22 0.06
22 2 0.01
23 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:18558203 original size:41 final size:40
Alignment explanation
Indices: 18558116--18558211 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 40
18558106 TAATTAAGCT
**
18558116 ATGTAAGTCATGTATTATGTAAGCTATGTAAGTTGTGTATT
1 ATGTAAGT-ATGTATTATGTAAGCTATGTAAGTTGTGTAGA
* * *
18558157 GTGTAAGCTATGTATTATGTATGTTATGTAAGTTGTGTAGA
1 ATGTAAG-TATGTATTATGTAAGCTATGTAAGTTGTGTAGA
18558198 ATGTAAGGTATGTA
1 ATGTAA-GTATGTA
18558212 AGTTATATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 45 0.96
42 2 0.04
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (40 bp):
ATGTAAGTATGTATTATGTAAGCTATGTAAGTTGTGTAGA
Found at i:18558350 original size:71 final size:69
Alignment explanation
Indices: 18558261--18558592 Score: 455
Period size: 71 Copynumber: 4.8 Consensus size: 69
18558251 GTAACTTGTG
*
18558261 AGTTATGTAAGTTATGTATTATGTAAGTTATATAAGTTATGTATTATGTAAGTTATGTATAATAT
1 AGTTATGTAAGTTGTGTATTATGTAAGTTATATAAGTTATGTATTATGTAAGTTATGTATAATAT
18558326 TAAAT
66 T-AAT
* * * *
18558331 AAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTATAATA
1 -AGTTATGTAAGTTGTGTATTATGTAAGTTATATAAGTTATGTATTATGTAAGTTATGTATAATA
18558396 TTAAT
65 TTAAT
18558401 --TTATGTAAGTTGTGTA-TACTGTAAGTTATGA-AAGTTATGTATTATGTAAGTTATGTATAAT
1 AGTTATGTAAGTTGTGTATTA-TGTAAGTTAT-ATAAGTTATGTATTATGTAAGTTATGTATAAT
18558462 ATTAAAT
64 ATT-AAT
* * * *
18558469 AAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTATAATA
1 -AGTTATGTAAGTTGTGTATTATGTAAGTTATATAAGTTATGTATTATGTAAGTTATGTATAATA
18558534 TTAAT
65 TTAAT
18558539 --TTATGTAAGTTGTGTA-TACTGTAAGTTATGA-AAGTTATGTATTATGTAAGTTAT
1 AGTTATGTAAGTTGTGTATTA-TGTAAGTTAT-ATAAGTTATGTATTATGTAAGTTAT
18558593 TTATGTAATA
Statistics
Matches: 234, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
66 2 0.01
67 104 0.44
68 3 0.01
70 6 0.03
71 118 0.50
72 1 0.00
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (69 bp):
AGTTATGTAAGTTGTGTATTATGTAAGTTATATAAGTTATGTATTATGTAAGTTATGTATAATAT
TAAT
Found at i:18558411 original size:138 final size:138
Alignment explanation
Indices: 18558263--18558592 Score: 619
Period size: 138 Copynumber: 2.4 Consensus size: 138
18558253 AACTTGTGAG
*
18558263 TTATGTAAGTTATGTATTA-TGTAAGTTAT-ATAAGTTATGTATTATGTAAGTTATGTATAATAT
1 TTATGTAAGTTGTGTA-TACTGTAAGTTATGA-AAGTTATGTATTATGTAAGTTATGTATAATAT
18558326 TAAATAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTA
64 TAAATAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTA
18558391 TAATATTAAT
129 TAATATTAAT
18558401 TTATGTAAGTTGTGTATACTGTAAGTTATGAAAGTTATGTATTATGTAAGTTATGTATAATATTA
1 TTATGTAAGTTGTGTATACTGTAAGTTATGAAAGTTATGTATTATGTAAGTTATGTATAATATTA
18558466 AATAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTATA
66 AATAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTATA
18558531 ATATTAAT
131 ATATTAAT
18558539 TTATGTAAGTTGTGTATACTGTAAGTTATGAAAGTTATGTATTATGTAAGTTAT
1 TTATGTAAGTTGTGTATACTGTAAGTTATGAAAGTTATGTATTATGTAAGTTAT
18558593 TTATGTAATA
Statistics
Matches: 189, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
137 2 0.01
138 186 0.98
139 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (138 bp):
TTATGTAAGTTGTGTATACTGTAAGTTATGAAAGTTATGTATTATGTAAGTTATGTATAATATTA
AATAAGTTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTATTATGTAAGTTGTGTATA
ATATTAAT
Found at i:18558661 original size:12 final size:12
Alignment explanation
Indices: 18558644--18558670 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
18558634 GTAGGCTATG
18558644 TATTATGTAAGT
1 TATTATGTAAGT
18558656 TATTATGTAAGT
1 TATTATGTAAGT
18558668 TAT
1 TAT
18558671 GCAAGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
TATTATGTAAGT
Found at i:18558687 original size:21 final size:21
Alignment explanation
Indices: 18558646--18558689 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
18558636 AGGCTATGTA
* *
18558646 TTATGTAAGTTATTATGTAAG
1 TTATGCAAGTTATTATATAAG
18558667 TTATGCAAGTT-TATATATAAG
1 TTATGCAAGTTAT-TATATAAG
18558688 TT
1 TT
18558690 TATATATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (21 bp):
TTATGCAAGTTATTATATAAG
Found at i:18558688 original size:12 final size:12
Alignment explanation
Indices: 18558673--18558701 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
18558663 TAAGTTATGC
18558673 AAGTTTATATAT
1 AAGTTTATATAT
18558685 AAGTTTATATAT
1 AAGTTTATATAT
18558697 AAGTT
1 AAGTT
18558702 ATGTAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
AAGTTTATATAT
Found at i:18558751 original size:63 final size:63
Alignment explanation
Indices: 18558684--18558964 Score: 562
Period size: 63 Copynumber: 4.5 Consensus size: 63
18558674 AGTTTATATA
18558684 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
1 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
18558747 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
1 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
18558810 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
1 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
18558873 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
1 TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
18558936 TAAGTTTATATATAAGTTATGTAAGTTAT
1 TAAGTTTATATATAAGTTATGTAAGTTAT
18558965 TATGCAGGAT
Statistics
Matches: 218, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 218 1.00
ACGTcount: A:0.38, C:0.01, G:0.11, T:0.49
Consensus pattern (63 bp):
TAAGTTTATATATAAGTTATGTAAGTTATGCATTATGTAATTAGTTTATATAAAAATTTTATT
Found at i:18564779 original size:22 final size:22
Alignment explanation
Indices: 18564733--18564780 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
18564723 CTTTAACCCT
**
18564733 AACCCATAAACCCCAATCCTTA
1 AACCCATAAACCCCAATCCACA
* *
18564755 AACCCATAATCCCTAATCCACA
1 AACCCATAAACCCCAATCCACA
18564777 AACC
1 AACC
18564781 TTAAAACCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCATAAACCCCAATCCACA
Found at i:18564819 original size:22 final size:22
Alignment explanation
Indices: 18564793--18564834 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
18564783 AAAACCCAGC
18564793 CCTTATACCC-TAACCCTTAAAA
1 CCTTAT-CCCTTAACCCTTAAAA
*
18564815 CCTTATCCCTTAATCCTTAA
1 CCTTATCCCTTAACCCTTAA
18564835 CCTCTAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (22 bp):
CCTTATCCCTTAACCCTTAAAA
Found at i:18564977 original size:21 final size:20
Alignment explanation
Indices: 18564946--18564984 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
18564936 CTAAATCCTA
*
18564946 AACCCTTAACCTTAAACCCC
1 AACCCTTAACCATAAACCCC
18564966 AACCCTTGAACCATAAACC
1 AACCCTT-AACCATAAACC
18564985 GTGCACAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.41, G:0.03, T:0.18
Consensus pattern (20 bp):
AACCCTTAACCATAAACCCC
Found at i:18565045 original size:22 final size:22
Alignment explanation
Indices: 18564995--18565043 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
18564985 GTGCACAAAC
*
18564995 CATAATCCTTAAACCCTTAACT
1 CATAAACCTTAAACCCTTAACT
* *
18565017 CGTAAACCTTAAA-CCTTGACT
1 CATAAACCTTAAACCCTTAACT
18565038 CATAAA
1 CATAAA
18565044 ACATAAACTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (22 bp):
CATAAACCTTAAACCCTTAACT
Found at i:18565846 original size:229 final size:228
Alignment explanation
Indices: 18565423--18566036 Score: 795
Period size: 229 Copynumber: 2.7 Consensus size: 228
18565413 ACTTATTAGC
* * * *
18565423 AAAGCAAAGAAATAAAACGCTACCGTTTTTG-TCAACATATTTGCGGCGTTTGTTTATATGCGCC
1 AAAGCGAAGAAATAAAATGCTGCCGTTTTTGATCAAC-T-TTTGCGGCGTTTGTTTACATGCGCC
* *
18565487 GCTAACACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTACCTATACCTCAACAGA
64 GCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTCCCTATACCTCAACAGA
* * * * *
18565552 AAACAACGTCGTTTTGCTTAACTTATTAACGGCACTTTTGGAAAAGCGTCGGTAAAGATCGAAAG
129 AAACAACGTCGTTTTGCTTAACTTACTAACGACACTTTTAGAAAAGCGTCAGTAAAGACCGAAAG
*
18565617 TTGCGGCGTTTTT-AAAAATCGCCACTAAATCAAGT
194 TTGCGACGTTTTTAAAAAAT-GCCACTAAATCAAGT
* *
18565652 AAAGCGAAGAAATAAAATGCTGCCGTTTTTGATCAACTTTATGCGGCATCTGTTTACATGCGCCG
1 AAAGCGAAGAAATAAAATGCTGCCGTTTTTGATCAACTTT-TGCGGCGTTTGTTTACATGCGCCG
* *
18565717 CTATCACCTAACCTTTAGCGGCATTTTACAAAAAGCGCCGCTAATGTCCCTATACATCAACAGAA
65 CTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTCCCTATACCTCAACAGAA
* * * * *
18565782 AACAATGTCGTTTTTCTTAACTTACTAGCGACGCTTTTAGAAAAGCG-CTAGTAAAGCCCGAAAG
130 AACAACGTCGTTTTGCTTAACTTACTAACGACACTTTTAGAAAAGCGTC-AGTAAAGACCGAAAG
* *
18565846 TTGCGACGTTTTTAGAAAAAATGCCATTAAATTAAGT
194 TTGCGACGTTTTT--AAAAAATGCCACTAAATCAAGT
* * * * * * *
18565883 AAAACGAAGAAATAAAATGCTGCC-ATTTTGATCAAATTTTTTGCAGTGTTTGTTTACGTGCGCT
1 AAAGCGAAGAAATAAAATGCTGCCGTTTTTGATC-AA-CTTTTGCGGCGTTTGTTTACATGCGCC
* * * * * *
18565947 GCTATTACCTAACATTTAGTGGCGTTTTATAGAAAGCGACGCTAATGTCCCTATACCTCAACAGA
64 GCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTCCCTATACCTCAACAGA
18566012 AAACAACGTCGTTTTGCTTAACTTA
129 AAACAACGTCGTTTTGCTTAACTTA
18566037 TTTGCGGCGT
Statistics
Matches: 335, Mismatches: 42, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
228 3 0.01
229 175 0.52
230 13 0.04
231 135 0.40
232 9 0.03
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (228 bp):
AAAGCGAAGAAATAAAATGCTGCCGTTTTTGATCAACTTTTGCGGCGTTTGTTTACATGCGCCGC
TATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTCCCTATACCTCAACAGAAA
ACAACGTCGTTTTGCTTAACTTACTAACGACACTTTTAGAAAAGCGTCAGTAAAGACCGAAAGTT
GCGACGTTTTTAAAAAATGCCACTAAATCAAGT
Found at i:18566127 original size:231 final size:225
Alignment explanation
Indices: 18565470--18566205 Score: 737
Period size: 231 Copynumber: 3.2 Consensus size: 225
18565460 TATTTGCGGC
* *
18565470 GTTTGTTTATATGCGCCGCTAACACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGT
1 GTTTGTTTACATGCGCCGCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGT
* * *
18565535 ACCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTAACGGCACTTTTGGAAAAGCG
66 CCCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTAGCGGC-GTTTT--AAAAGCG
* * * * ** * *
18565600 TCGGTAAAGATCGAAAGTTGCGGCGTTTTTAAAAATCGCCACTAAATCAAGTAAAGCGAAGAAAT
128 CCAGTAAAGCTCGAAAGTTGCGGCGTTTTTAAAAAACATCATTAATTC-AGTAAAGCGAAGAAAT
* * * * *
18565665 AAAATGCTGCCGTTTTTGATC-AACTTTATGCGGC
192 AAAATGCTGCC-ATTTTGATCAAATTTTTTGCAGT
* * *
18565699 ATCTGTTTACATGCGCCGCTATCACCTAACCTTTAGCGGCATTTTACAAAAAGCGCCGCTAATGT
1 GTTTGTTTACATGCGCCGCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGT
* * * * *
18565764 CCCTATACATCAACAGAAAACAATGTCGTTTTTCTTAACTTACTAGCGACGCTTTTAGAAAAGCG
66 CCCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTAGCGGCG-TTTT--AAAAGCG
* * * * *
18565829 CTAGTAAAGCCCGAAAGTTGCGACGTTTTTAGAAAAA-ATGCCATTAAATTAAGTAAAACGAAGA
128 CCAGTAAAGCTCGAAAGTTGCGGCGTTTTTA-AAAAACAT--CATT-AATTCAGTAAAGCGAAGA
18565893 AATAAAATGCTGCCATTTTGATCAAATTTTTTGCAGT
189 AATAAAATGCTGCCATTTTGATCAAATTTTTTGCAGT
* * * * * * * *
18565930 GTTTGTTTACGTGCGCTGCTATTACCTAACATTTAGTGGCGTTTTATAGAAAGCGACGCTAATGT
1 GTTTGTTTACATGCGCCGCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGT
*
18565995 CCCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTTGCGGCGTTTCTCAATAAGCG
66 CCCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTAGCGGCGTTT-T-AA-AAGCG
* * * * * * *
18566060 CCACTAATGCTC-AATCATTTTCGGCATTTTTCAAAAAACATCATTGATTCCGCTAAAGC-ATAG
128 CCAGTAAAGCTCGAA--AGTTGCGGCGTTTTT-AAAAAACATCATTAATTCAG-TAAAGCGA-AG
*** * * *
18566123 AAATAAAACATTGCCGTTTTGCTCAACTTTTTTGCAGT
188 AAATAAAATGCTGCCATTTTGATCAAATTTTTTGCAGT
* *
18566161 GTTT-TTTCACATGCGCCGCTAAT-TCCTTACCTTTAGCGGCGTTTT
1 GTTTGTTT-ACATGCGCCGCT-ATCACCTAACCTTTAGCGGCGTTTT
18566206 GCATAAAGTG
Statistics
Matches: 417, Mismatches: 74, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
229 140 0.34
230 27 0.06
231 226 0.54
232 21 0.05
233 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (225 bp):
GTTTGTTTACATGCGCCGCTATCACCTAACCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGT
CCCTATACCTCAACAGAAAACAACGTCGTTTTGCTTAACTTATTAGCGGCGTTTTAAAAGCGCCA
GTAAAGCTCGAAAGTTGCGGCGTTTTTAAAAAACATCATTAATTCAGTAAAGCGAAGAAATAAAA
TGCTGCCATTTTGATCAAATTTTTTGCAGT
Found at i:18576622 original size:17 final size:18
Alignment explanation
Indices: 18576587--18576623 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
18576577 AAAATTTATT
*
18576587 TTATAATAAGATGATATC
1 TTATAATAAGATAATATC
18576605 TTATAATAA-ATAATATC
1 TTATAATAAGATAATATC
18576622 TT
1 TT
18576624 TTATAGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (18 bp):
TTATAATAAGATAATATC
Found at i:18578948 original size:10 final size:10
Alignment explanation
Indices: 18578920--18578951 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
18578910 AAACGAAAAT
18578920 AAAAGAGATA
1 AAAAGAGATA
18578930 AAAA-A-ATA
1 AAAAGAGATA
18578938 AAAAGAGATA
1 AAAAGAGATA
18578948 AAAA
1 AAAA
18578952 CAATAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 7 0.35
9 2 0.10
10 11 0.55
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09
Consensus pattern (10 bp):
AAAAGAGATA
Found at i:18578950 original size:16 final size:16
Alignment explanation
Indices: 18578915--18578951 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
18578905 TCCAAAAACG
18578915 AAAATAAAAGAGATAAA
1 AAAATAAAAGAGAT-AA
18578932 AAAATAAAAAGAGATAA
1 AAAAT-AAAAGAGATAA
18578949 AAA
1 AAA
18578952 CAATAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAAATAAAAGAGATAA
Found at i:18578956 original size:19 final size:18
Alignment explanation
Indices: 18578915--18578959 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
18578905 TCCAAAAACG
18578915 AAAAT-AAAAGAGATAAA
1 AAAATAAAAAGAGATAAA
18578932 AAAATAAAAAGAGATAAA
1 AAAATAAAAAGAGATAAA
18578950 AACAATAAAA
1 AA-AATAAAA
18578960 TGAAAACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 5 0.19
18 14 0.54
19 7 0.27
ACGTcount: A:0.78, C:0.02, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAATAAAAAGAGATAAA
Found at i:18579744 original size:85 final size:85
Alignment explanation
Indices: 18579646--18580277 Score: 279
Period size: 85 Copynumber: 7.4 Consensus size: 85
18579636 TCTTCAACCT
* *
18579646 GCTCCACTGCAACTTCAGGGAGATAAGGCTT-GATGCGATCTGCTCTACTGCAACTTCAGAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGCGATCTACTCCACTGCAACTTCAGAGAGA
18579710 TAAGACATGTGGTTTTGATCC
66 TAAGAC-TGTGGTTTTGATCC
* * * * * * *
18579731 GCTCCACTGCAACTTCAGGGAGAT-AGGATTGGTTTCTTTTG-TCTGCTCCACTGAAACTTTAGG
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGC----GATCTACTCCACTGCAACTTCAGA
* * *
18579794 GAGATAAGAC--TGGATGTGATCT
62 GAGATAAGACTGTGGTTTTGATCC
* * * * * ** * * *
18579816 GCTCTATTGCAACTTCAGAGAGATAAGATCTGTGGTTTTGATCCACTCCACTACAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAG-GCT-TGGATGCGATCTACTCCACTGCAACTTCAGAGA
* * ** *
18579881 GATAGGATTGGTTTCTTTTG-TCT
64 GATAAGACT-G-TGGTTTTGATCC
* * * * * **
18579904 GCTCCACTGAAAATTTAGGGAGATAAGAC-TGGATGTGATCTACTTTACTGCAACTTCAGAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGCGATCTACTCCACTGCAACTTCAGAGAGA
18579968 TAAGATCTGTGGTTTTGATCC
66 TAAGA-CTGTGGTTTTGATCC
* * * * * * * *
18579989 ACTCCACTGCAACTTCAAGGAGAT-AGGATTGGTTTCTTTTG-TCTGCTTCACTGAAACTTCA-A
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGC----GATCTACTCCACTGCAACTTCAGA
* * * * **
18580051 GGAGATAAGAC--TAGATGTAATTT
62 -GAGATAAGACTGTGGTTTTGATCC
* * * * * * ** ** * * *
18580074 GCTCTACTGCAACTTTAGAGAGATAAGATCTGTAGTTTTGATCCGCTCCACTACAACTTTAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAG-GCT-TGGATGCGATCTACTCCACTGCAACTTCAGAGA
* * ** *
18580139 GATAGGATTGGTTTCTTTTG-TCT
64 GATAAGACT-G-TGGTTTTGATCC
* ** * * * * *
18580162 GCTCCACTACTGCTT-AGAGAGATAAGAC-TGGATGCGATCTGCTCTACTGCAACTTCAAAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGCGATCTACTCCACTGCAACTTCAGAGAGA
*
18580225 TAAGATCTGTGGTTTTAATCC
66 TAAGA-CTGTGGTTTTGATCC
* *
18580246 GCTCCACTGCAACTTCAAGTAGAT-AGGCTTGG
1 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGG
18580278 CTTTTATATG
Statistics
Matches: 397, Mismatches: 116, Indels: 68
0.68 0.20 0.12
Matches are distributed among these distances:
83 5 0.01
84 62 0.16
85 197 0.50
86 6 0.02
87 16 0.04
88 102 0.26
89 9 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGGCTTGGATGCGATCTACTCCACTGCAACTTCAGAGAGA
TAAGACTGTGGTTTTGATCC
Found at i:18579745 original size:44 final size:43
Alignment explanation
Indices: 18579644--18580270 Score: 354
Period size: 44 Copynumber: 14.6 Consensus size: 43
18579634 TATCTTCAAC
* * * **
18579644 CTGCTCCACTGCAACTTCAGGGAGATAAGGCT-T-GATGCGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGTTTTGAT
*
18579685 CTGCTCTACTGCAACTTCAGAGAGATAAGACATGTGGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGAC-TGTGGTTTTGAT
* * * * **
18579729 CCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTG-T
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACT-G-TGGTTTTGAT
* * * * *
18579773 CTGCTCCACTGAAACTTTAGGGAGATAAGAC--TGGATGTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGTTTTGAT
* *
18579814 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTGGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGTTTTGAT
** * * * * **
18579858 CCACTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTTTG-T
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACT-G-TGGTTTTGAT
* * * * * *
18579902 CTGCTCCACTGAAAATTTAGGGAGATAAGAC--TGGATGTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGTTTTGAT
* **
18579943 CTACTTTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGTTTTGAT
** * * **
18579987 CCACTCCACTGCAACTTCA-AGGAGATAGGATTGGTTTCTTTTG-T
1 CTGCTCCACTGCAACTTCAGA-GAGATAAGACT-G-TGGTTTTGAT
* * * * * *
18580031 CTGCTTCACTGAAACTTCA-AGGAGATAAGAC--TAGATGTAAT
1 CTGCTCCACTGCAACTTCAGA-GAGATAAGACTGTGGTTTTGAT
* * * *
18580072 TTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGTTTTGAT
* * * * * * **
18580116 CCGCTCCACTACAACTTTAGGGAGATAGGATTGGTTTCTTTTG-T
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACT-G-TGGTTTTGAT
* ** * **
18580160 CTGCTCCACTACTGCTT-AGAGAGATAAGAC--TGGATGCGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGTTTTGAT
* * *
18580200 CTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGGTTTTAAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGTTTTGAT
*
18580244 CCGCTCCACTGCAACTTCA-AGTAGATA
1 CTGCTCCACTGCAACTTCAGAG-AGATA
18580271 GGCTTGGCTT
Statistics
Matches: 438, Mismatches: 117, Indels: 59
0.71 0.19 0.10
Matches are distributed among these distances:
39 3 0.01
40 25 0.06
41 113 0.26
42 6 0.01
43 18 0.04
44 249 0.57
45 24 0.05
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGTTTTGAT
Found at i:18579858 original size:129 final size:129
Alignment explanation
Indices: 18579644--18580277 Score: 943
Period size: 129 Copynumber: 4.9 Consensus size: 129
18579634 TATCTTCAAC
* * * * *
18579644 CTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGATGCGATCTGCTCTACTGCAACTTCAGAGAG
1 CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
18579709 ATAAGA-CATGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
66 ATAAGATC-TGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
*
18579773 CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTATTGCAACTTCAGAGAG
1 CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
* *
18579838 ATAAGATCTGTGGTTTTGATCCACTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
66 ATAAGATCTGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
* * *
18579902 CTGCTCCACTGAAAATTTAGGGAGATAAGACTGGATGTGATCTACTTTACTGCAACTTCAGAGAG
1 CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
* *
18579967 ATAAGATCTGTGGTTTTGATCCACTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTTTGT
66 ATAAGATCTGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
* * * * * * *
18580031 CTGCTTCACTGAAACTTCAAGGAGATAAGACTAGATGTAATTTGCTCTACTGCAACTTTAGAGAG
1 CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
* * *
18580096 ATAAGATCTGTAGTTTTGATCCGCTCCACTACAACTTTAGGGAGATAGGATTGGTTTCTTTTGT
66 ATAAGATCTGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
* * *
18580160 CTGCTCCACT---ACTGCTTAGAGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAG
1 CTGCTCCACTGAAACT--TTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * * *
18580222 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGTAGATAGGCTTGG
64 AGATAAGATCTGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGG
18580278 CTTTTATATG
Statistics
Matches: 456, Mismatches: 46, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
126 3 0.01
128 87 0.19
129 365 0.80
130 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (129 bp):
CTGCTCCACTGAAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAG
ATAAGATCTGTGGTTTTGATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGT
Found at i:18580345 original size:50 final size:50
Alignment explanation
Indices: 18580291--18580386 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
18580281 TTATATGTTT
** *
18580291 AATTGCAATGTTGGGGAAGTAAGATTCGTCGTCGTAGCTTCAATCTTTTA
1 AATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTTTTA
* *
18580341 AATTGCAATGTTGGGGAAACAAGATTCGCCGTTGTAGCTTTAATCT
1 AATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCT
18580387 GTTCCACTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (50 bp):
AATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTTTTA
Found at i:18580533 original size:45 final size:44
Alignment explanation
Indices: 18580478--18581130 Score: 731
Period size: 45 Copynumber: 14.5 Consensus size: 44
18580468 ACTTCGCCAT
* *
18580478 CAATACAGGAAGGCAAGATCTGTTATCTTCAGTCTACTTCACTGC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* * * *
18580523 TAATATAGGAAGACAAGACTTGCTATCTTC-GATCTACTTTGCTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAG-TCTACTTCGCTGC
*
18580568 CAATACAGGAAGACAAGATATGTTATCTTCAGTCTACTTCGCTGC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* * *
18580613 TAATACAGGAAGACAAGACTTGCTATCTTCAGTCTACTTCGCTGT
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAGTCTACTTCGCTGC
* *
18580658 AAATACAGGAAGACAATATCTGTTATCTTCAGTCTACTTCGCTGC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* * *
18580703 CAATACAGGAAGACAAGACTTGCTATCTTTAATCTACTTCGCTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAGTCTACTTCGCTGC
* * * *
18580748 CAATATATGAACACAAGATCTGTTATCTTCAGTCTACTTCGCTAC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* *
18580793 CAATACAGGAAGACAAGACTTGCTATCTTCAGTCAACTTCGCTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAGTCTACTTCGCTGC
* * * *
18580838 TAATACAGGAAGATAAGACT-TACAATCTTC-GATCTACTTCGTTGC
1 CAATACAGGAAGACAAGACTGT--TATCTTCAG-TCTACTTCGCTGC
* * * *
18580883 CAATACAGAAAGACAAGATTTGTTATCTTCAGTCTACTTTGCTTC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* * * *
18580928 CAATATAGGAAGACAAAACTTGCTATCTT-TGATCTACTTCGCTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAG-TCTACTTCGCTGC
*
18580973 CAATACAGGAAGACAAGATCTGTTATCTTCAGTCTACTTCGCTTC
1 CAATACAGGAAGACAAGA-CTGTTATCTTCAGTCTACTTCGCTGC
* *
18581018 CAATACAGGAAGACAAGACTTGCTATCTTCAGTCTACTTCACTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAGTCTACTTCGCTGC
* * * *
18581063 TAATACAGGAAGATAAGACTTGCTATCTT-TGATCTACTTCGCTGC
1 CAATACAGGAAGACAAGAC-TGTTATCTTCAG-TCTACTTCGCTGC
18581108 CAATACAGGAAGACAAGATCTGT
1 CAATACAGGAAGACAAGA-CTGT
18581131 AATGTATAGC
Statistics
Matches: 512, Mismatches: 74, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
44 9 0.02
45 494 0.96
46 8 0.02
47 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (44 bp):
CAATACAGGAAGACAAGACTGTTATCTTCAGTCTACTTCGCTGC
Found at i:18580613 original size:90 final size:89
Alignment explanation
Indices: 18580478--18581126 Score: 813
Period size: 90 Copynumber: 7.2 Consensus size: 89
18580468 ACTTCGCCAT
* * * *
18580478 CAATACAGGAAGGCAAGATCTGTTATCTTCAGTCTACTTCACTGCTAATATAGGAAGACAAGACT
1 CAATACAGGAAGACAAGAT-TGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
*
18580543 TGCTATCTTC-GATCTACTTTGCTGC
65 TGCTATCTTCAG-TCTACTTCGCTGC
*
18580568 CAATACAGGAAGACAAGATATGTTATCTTCAGTCTACTTCGCTGCTAATACAGGAAGACAAGACT
1 CAATACAGGAAGACAAGAT-TGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
*
18580633 TGCTATCTTCAGTCTACTTCGCTGT
65 TGCTATCTTCAGTCTACTTCGCTGC
* *
18580658 AAATACAGGAAGACAATATCTGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
1 CAATACAGGAAGACAAGAT-TGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
* *
18580723 TGCTATCTTTAATCTACTTCGCTGC
65 TGCTATCTTCAGTCTACTTCGCTGC
* * * *
18580748 CAATATATGAACACAAGATCTGTTATCTTCAGTCTACTTCGCTACCAATACAGGAAGACAAGACT
1 CAATACAGGAAGACAAGAT-TGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
*
18580813 TGCTATCTTCAGTCAACTTCGCTGC
65 TGCTATCTTCAGTCTACTTCGCTGC
* * *** * * *
18580838 TAATACAGGAAGATAAGACTTACAATCTTC-GATCTACTTCGTTGCCAATACAGAAAGACAAGAT
1 CAATACAGGAAGACAAGA-TTGTTATCTTCAG-TCTACTTCGCTGCCAATACAGGAAGACAAGAC
* * *
18580902 TTGTTATCTTCAGTCTACTTTGCTTC
64 TTGCTATCTTCAGTCTACTTCGCTGC
* * * *
18580928 CAATATAGGAAGACAAAACTTGCTATCTT-TGATCTACTTCGCTGCCAATACAGGAAGACAAGA-
1 CAATACAGGAAGACAAGA-TTGTTATCTTCAG-TCTACTTCGCTGCCAATACAGGAAGACAAGAC
* *
18580991 TCTGTTATCTTCAGTCTACTTCGCTTC
64 T-TGCTATCTTCAGTCTACTTCGCTGC
* * * *
18581018 CAATACAGGAAGACAAGACTTGCTATCTTCAGTCTACTTCACTGCTAATACAGGAAGATAAGACT
1 CAATACAGGAAGACAAGA-TTGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACT
*
18581083 TGCTATCTT-TGATCTACTTCGCTGC
65 TGCTATCTTCAG-TCTACTTCGCTGC
18581108 CAATACAGGAAGACAAGAT
1 CAATACAGGAAGACAAGAT
18581127 CTGTAATGTA
Statistics
Matches: 495, Mismatches: 56, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
89 4 0.01
90 487 0.98
91 4 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (89 bp):
CAATACAGGAAGACAAGATTGTTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTT
GCTATCTTCAGTCTACTTCGCTGC
Found at i:18581299 original size:50 final size:49
Alignment explanation
Indices: 18581245--18581499 Score: 172
Period size: 50 Copynumber: 5.1 Consensus size: 49
18581235 TTGCAGCCTC
** *
18581245 AATCTTTTAAATTGCAATGTCGGAGAAGCAAGATTCACCATTGTAGCTTT
1 AATCTTTTAAATTGCAATGTCGG-GAAGCAAGATTTGCCGTTGTAGCTTT
** ** * * * * ** *
18581295 AATCTGCTCCACTGC-ATCGCCGTGGATGTAAGATTTGCCGTTGCGGCTTC
1 AATCTTTTAAATTGCAAT-GTCG-GGAAGCAAGATTTGCCGTTGTAGCTTT
*
18581345 AATCTTTTAAATTGCAATGTCAGGGAAGCAAGATTTGCTGTTGTAGCTTT
1 AATCTTTTAAATTGCAATGTC-GGGAAGCAAGATTTGCCGTTGTAGCTTT
** ** * * * * * * ** *
18581395 AATCTGCTCTACTGC-ATCGCCATGGAAGTAAGATTTACCATTGCGGCTTC
1 AATCTTTTAAATTGCAAT-GTC-GGGAAGCAAGATTTGCCGTTGTAGCTTT
*
18581445 AATCTTTTAAATTGTAATGTCGGGGAAGCAAGATTTGCCGTTGTAGCTTT
1 AATCTTTTAAATTGCAATGTC-GGGAAGCAAGATTTGCCGTTGTAGCTTT
18581495 AATCT
1 AATCT
18581500 ACTCCACTGC
Statistics
Matches: 144, Mismatches: 55, Indels: 12
0.68 0.26 0.06
Matches are distributed among these distances:
49 4 0.03
50 134 0.93
51 6 0.04
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (49 bp):
AATCTTTTAAATTGCAATGTCGGGAAGCAAGATTTGCCGTTGTAGCTTT
Found at i:18581347 original size:100 final size:99
Alignment explanation
Indices: 18581167--18581510 Score: 447
Period size: 100 Copynumber: 3.4 Consensus size: 99
18581157 TGCGATGCCG
* * * * * * * * *
18581167 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCATTACACCACCA-GAGAAGTAAGATCT
1 GGGAAGCAAGATTTGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATG-GAAGTAAGATTT
* *
18581231 ACCGTTGCAGCCTCAATCTTTTAAATTGCAATGTC
65 ACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC
** * * *
18581266 GGAGAAGCAAGATTCACCATTGTAGCTTTAATCTGCTCCACTGCATCGCCGTGGATGTAAGATTT
1 GG-GAAGCAAGATTTGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAAGTAAGATTT
*
18581331 GCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC
65 ACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC
* *
18581366 AGGGAAGCAAGATTTGCTGTTGTAGCTTTAATCTGCTCTACTGCATCGCCATGGAAGTAAGATTT
1 -GGGAAGCAAGATTTGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAAGTAAGATTT
* *
18581431 ACCATTGCGGCTTCAATCTTTTAAATTGTAATGTC
65 ACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC
*
18581466 GGGGAAGCAAGATTTGCCGTTGTAGCTTTAATCTACTCCACTGCA
1 -GGGAAGCAAGATTTGCCGTTGTAGCTTTAATCTGCTCCACTGCA
18581511 CTACCAGGGA
Statistics
Matches: 213, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
99 2 0.01
100 208 0.98
101 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (99 bp):
GGGAAGCAAGATTTGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAAGTAAGATTTA
CCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC
Found at i:18582384 original size:38 final size:38
Alignment explanation
Indices: 18582342--18582424 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
18582332 AATATTATCA
*
18582342 AAATGAACAAGAT-GAAGTTATT-TTGAGAACAAAGCTCG
1 AAATGAACAA-ATCAAAGTT-TTGTTGAGAACAAAGCTCG
**
18582380 AAATGAATGAATCAAAGTTTTGTTGAGAACAAAGCTCG
1 AAATGAACAAATCAAAGTTTTGTTGAGAACAAAGCTCG
18582418 AAATGAA
1 AAATGAA
18582425 TGAATCAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
37 4 0.10
38 36 0.90
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (38 bp):
AAATGAACAAATCAAAGTTTTGTTGAGAACAAAGCTCG
Found at i:18582425 original size:38 final size:38
Alignment explanation
Indices: 18582356--18582432 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 38
18582346 GAACAAGATG
18582356 AAGTTATTTTGAGAACAAAGCTCGAAATGAATGAATCA
1 AAGTTATTTTGAGAACAAAGCTCGAAATGAATGAATCA
18582394 AAGTT-TTGTTGAGAACAAAGCTCGAAATGAATGAATCA
1 AAGTTATT-TTGAGAACAAAGCTCGAAATGAATGAATCA
18582432 A
1 A
18582433 TCAAGATAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 2 0.05
38 36 0.95
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.26
Consensus pattern (38 bp):
AAGTTATTTTGAGAACAAAGCTCGAAATGAATGAATCA
Found at i:18582812 original size:12 final size:12
Alignment explanation
Indices: 18582790--18582837 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
18582780 TGGCCTCTCC
18582790 TTTTTCTTTTTCA
1 TTTTTC-TTTTCA
*
18582803 TTTTTCTTTTCT
1 TTTTTCTTTTCA
18582815 TTTTTCTTTTCA
1 TTTTTCTTTTCA
18582827 TTTTT-TTTTCA
1 TTTTTCTTTTCA
18582838 AATGAAGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
11 6 0.18
12 21 0.64
13 6 0.18
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTCTTTTCA
Found at i:18582824 original size:18 final size:18
Alignment explanation
Indices: 18582791--18582837 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
18582781 GGCCTCTCCT
18582791 TTTTC-TTTTTCATTTTTC
1 TTTTCTTTTTTCA-TTTTC
18582809 TTTTCTTTTTTC-TTTTC
1 TTTTCTTTTTTCATTTTC
*
18582826 ATTT-TTTTTTCA
1 TTTTCTTTTTTCA
18582838 AATGAAGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 8 0.31
18 5 0.19
19 6 0.23
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTTTCATTTTC
Found at i:18583287 original size:14 final size:13
Alignment explanation
Indices: 18583268--18583303 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
18583258 CCCAGTAGAG
18583268 GTTTTTTATTTTTT
1 GTTTTTT-TTTTTT
18583282 GTTTTTGTTTTTTT
1 GTTTTT-TTTTTTT
18583296 GTTTTTTT
1 GTTTTTTT
18583304 ATTGCCTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 18 0.86
15 1 0.05
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (13 bp):
GTTTTTTTTTTTT
Found at i:18587964 original size:18 final size:18
Alignment explanation
Indices: 18587936--18587980 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
18587926 TACAAAAACG
*
18587936 AAAAT-AAAAGAGATAAT
1 AAAATAAAAAGAGATAAA
*
18587953 AAAATAAAAAGATATAAA
1 AAAATAAAAAGAGATAAA
18587971 AACAATAAAA
1 AA-AATAAAA
18587981 TGAAAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (18 bp):
AAAATAAAAAGAGATAAA
Found at i:18587972 original size:16 final size:17
Alignment explanation
Indices: 18587936--18587971 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
18587926 TACAAAAACG
18587936 AAAATAAAAGAGATAAT
1 AAAATAAAAGAGATAAT
18587953 AAAATAAAA-AGAT-AT
1 AAAATAAAAGAGATAAT
18587968 AAAA
1 AAAA
18587972 ACAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 4 0.21
17 9 0.47
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (17 bp):
AAAATAAAAGAGATAAT
Found at i:18588797 original size:20 final size:20
Alignment explanation
Indices: 18588754--18588798 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
18588744 AATAATACAT
* *
18588754 TAATTTAAAAAAATAACTCT
1 TAATTTAAAAAAATAACGCG
18588774 TAATTTAAAGAAAATAA-GCG
1 TAATTTAAA-AAAATAACGCG
18588794 TAATT
1 TAATT
18588799 ATCTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (20 bp):
TAATTTAAAAAAATAACGCG
Found at i:18590157 original size:49 final size:50
Alignment explanation
Indices: 18590050--18590166 Score: 125
Period size: 51 Copynumber: 2.4 Consensus size: 50
18590040 GTCAAATTTT
* *
18590050 TTTAAAAAAATTC-AAAAAATATATAAATTTCTAAAATATGTAAATATAAA
1 TTTAAAAAAATTCAAAAAAATATAAAAATTTCTAAAATAGGT-AATATAAA
* * *
18590100 TTT-TAAAAATTCAAAATAAATATAAAAATTTTTAAAA-AGGT-ATTTAAA
1 TTTAAAAAAATTCAAAA-AAATATAAAAATTTCTAAAATAGGTAATATAAA
*
18590148 TTTACAAAAATTGCAAAAA
1 TTTAAAAAAATT-CAAAAA
18590167 GAACACTTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
48 9 0.16
49 16 0.28
50 14 0.25
51 18 0.32
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.34
Consensus pattern (50 bp):
TTTAAAAAAATTCAAAAAAATATAAAAATTTCTAAAATAGGTAATATAAA
Found at i:18590288 original size:18 final size:17
Alignment explanation
Indices: 18590255--18590289 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18590245 TTTTAAAATT
*
18590255 TAAAATTTTTGAAAAAA
1 TAAAATTTATGAAAAAA
*
18590272 TAAAATTTATGACAAAA
1 TAAAATTTATGAAAAAA
18590289 T
1 T
18590290 GTCTAGAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (17 bp):
TAAAATTTATGAAAAAA
Found at i:18594283 original size:18 final size:20
Alignment explanation
Indices: 18594245--18594283 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
18594235 TGTGGAAGAG
*
18594245 AAGATATAAATATTTTGATC
1 AAGATATAAATATTTTCATC
18594265 AAGAT-TAAA-ATTTTCATC
1 AAGATATAAATATTTTCATC
18594283 A
1 A
18594284 CAGACAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (20 bp):
AAGATATAAATATTTTCATC
Found at i:18601979 original size:46 final size:45
Alignment explanation
Indices: 18601912--18602237 Score: 377
Period size: 46 Copynumber: 7.6 Consensus size: 45
18601902 TTTGAGTACT
* *
18601912 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
18601958 TCTGATCAAGTGAAAAAGTGATAAGT-G-A---TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
18601994 TTTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
**
18602030 TCTGATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* * *
18602076 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTCTCAGCTATACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
18602122 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
18602168 TCTGATCAAGTGAAAAAGTGATAAGTGATAGCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
18602213 TCTGATCAAG-G-ACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
18602238 ATCATACGTA
Statistics
Matches: 250, Mismatches: 16, Indels: 31
0.84 0.05 0.10
Matches are distributed among these distances:
34 1 0.00
36 57 0.23
38 1 0.00
39 2 0.01
40 4 0.02
42 2 0.01
43 13 0.05
44 3 0.01
45 24 0.10
46 142 0.57
47 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:18604792 original size:17 final size:17
Alignment explanation
Indices: 18604770--18604804 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18604760 AATATGAAAA
*
18604770 GTAATCTTAGAAGATTT
1 GTAATCTGAGAAGATTT
*
18604787 GTAATCTGATAAGATTT
1 GTAATCTGAGAAGATTT
18604804 G
1 G
18604805 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (17 bp):
GTAATCTGAGAAGATTT
Found at i:18611451 original size:25 final size:24
Alignment explanation
Indices: 18611359--18611456 Score: 90
Period size: 25 Copynumber: 4.0 Consensus size: 24
18611349 GAACTCACCA
*
18611359 CAGCTCGTATGAGCTTACCGATTT
1 CAGCTCGGATGAGCTTACCGATTT
* * *
18611383 GAAACTCGTGA-GAGCTTAACGATTCT
1 -CAGCTCG-GATGAGCTTACCGATT-T
*
18611409 CAGCTCGTATGAGCTTACCGTATTT
1 CAGCTCGGATGAGCTTACCG-ATTT
* *
18611434 CAGCTCGGAGGAGCTTACTGATT
1 CAGCTCGGATGAGCTTACCGATT
18611457 ATGGCTCGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
24 4 0.07
25 49 0.84
26 5 0.09
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (24 bp):
CAGCTCGGATGAGCTTACCGATTT
Found at i:18612090 original size:30 final size:30
Alignment explanation
Indices: 18612066--18612157 Score: 121
Period size: 30 Copynumber: 3.0 Consensus size: 30
18612056 ATACAGTAGT
18612066 AGTGTGTAGGCCATAGCCCAATACAGTAACAG
1 AGTGTG-A-GCCATAGCCCAATACAGTAACAG
* *
18612098 AGTGTGAGCCTTAGCCCAATACAGTAACAA
1 AGTGTGAGCCATAGCCCAATACAGTAACAG
* * *
18612128 AGTGTGGGTCTTAGCCCAATACAGTAACAG
1 AGTGTGAGCCATAGCCCAATACAGTAACAG
18612158 TACAAATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 48 0.87
31 1 0.02
32 6 0.11
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.21
Consensus pattern (30 bp):
AGTGTGAGCCATAGCCCAATACAGTAACAG
Found at i:18612328 original size:26 final size:26
Alignment explanation
Indices: 18612265--18612328 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
18612255 ACACTAATAT
* *
18612265 CGCAACAAAGCTGCCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAATAATAGTAA
* *
18612291 CGCAGTAGAGCTGCCAAT-ATCAGTAA
1 CGCAGCAAAGCTGCCAATAAT-AGTAA
18612317 CGCAGCAAAGCT
1 CGCAGCAAAGCT
18612329 AATAGTAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
25 2 0.06
26 29 0.94
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAATAATAGTAA
Found at i:18612533 original size:26 final size:27
Alignment explanation
Indices: 18612498--18612729 Score: 238
Period size: 27 Copynumber: 8.7 Consensus size: 27
18612488 TACCCTATGG
*
18612498 GGGTATTTTGGTCATTTTACCTTTTG-
1 GGGTATTTTGGTCATTTTACCTTTCGA
*
18612524 GGGTATTTTGGTCATTTTACATTTC-A
1 GGGTATTTTGGTCATTTTACCTTTCGA
*
18612550 GGGTATTTTGGTCATTTTACCTTTTGA
1 GGGTATTTTGGTCATTTTACCTTTCGA
* *
18612577 GGGTATTTCGGTCATTTTACCATTCGA
1 GGGTATTTTGGTCATTTTACCTTTCGA
* * *
18612604 GGGTATTTTGATAATTTTACCCTTCGA
1 GGGTATTTTGGTCATTTTACCTTTCGA
* * *
18612631 GGGTATTTCGATCATTTTACC-CTCGA
1 GGGTATTTTGGTCATTTTACCTTTCGA
* * *
18612657 GGGTATTTCGATAATTTTA-CTCTTCGA
1 GGGTATTTTGGTCATTTTACCT-TTCGA
* * * * *
18612684 AGGTATTTCGATCATTTTACCCTTCAA
1 GGGTATTTTGGTCATTTTACCTTTCGA
* *
18612711 GGGTATTTCGGTAATTTTA
1 GGGTATTTTGGTCATTTTA
18612730 GAGGCCCATT
Statistics
Matches: 178, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.01
26 68 0.38
27 108 0.61
28 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.46
Consensus pattern (27 bp):
GGGTATTTTGGTCATTTTACCTTTCGA
Found at i:18612581 original size:53 final size:54
Alignment explanation
Indices: 18612498--18612729 Score: 258
Period size: 53 Copynumber: 4.4 Consensus size: 54
18612488 TACCCTATGG
* * * * *
18612498 GGGTATTTTGGTCATTTTACCTTTTG-GGGTATTTTGGTCATTTTACATTTC-A
1 GGGTATTTTGGTAATTTTACCTTTCGAGGGTATTTCGATCATTTTACACTTCGA
* * *
18612550 GGGTATTTTGGTCATTTTACCTTTTGAGGGTATTTCGGTCATTTTAC-CATTCGA
1 GGGTATTTTGGTAATTTTACCTTTCGAGGGTATTTCGATCATTTTACAC-TTCGA
* * *
18612604 GGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGATCATTTTAC-CCTCGA
1 GGGTATTTTGGTAATTTTACCTTTCGAGGGTATTTCGATCATTTTACACTTCGA
* * * * *
18612657 GGGTATTTCGATAATTTTA-CTCTTCGAAGGTATTTCGATCATTTTACCCTTCAA
1 GGGTATTTTGGTAATTTTACCT-TTCGAGGGTATTTCGATCATTTTACACTTCGA
*
18612711 GGGTATTTCGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
18612730 GAGGCCCATT
Statistics
Matches: 161, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
52 27 0.17
53 68 0.42
54 66 0.41
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.46
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACCTTTCGAGGGTATTTCGATCATTTTACACTTCGA
Found at i:18631372 original size:169 final size:169
Alignment explanation
Indices: 18631093--18631432 Score: 680
Period size: 169 Copynumber: 2.0 Consensus size: 169
18631083 CAAAAATTAA
18631093 TCAACAATTTAATAATTTAATTGAATAAGTTAAGCTCAAAATTGAACTTAACATTACATGTCACG
1 TCAACAATTTAATAATTTAATTGAATAAGTTAAGCTCAAAATTGAACTTAACATTACATGTCACG
18631158 TGTTCCATACTCTAGTGTAGTGGGATCTCTCATGTATGCTATGGTTTGTTCACATCCAGATTTAT
66 TGTTCCATACTCTAGTGTAGTGGGATCTCTCATGTATGCTATGGTTTGTTCACATCCAGATTTAT
18631223 CATATGCACTCAGTGCAGTTAGCAGATACATGGTGAATC
131 CATATGCACTCAGTGCAGTTAGCAGATACATGGTGAATC
18631262 TCAACAATTTAATAATTTAATTGAATAAGTTAAGCTCAAAATTGAACTTAACATTACATGTCACG
1 TCAACAATTTAATAATTTAATTGAATAAGTTAAGCTCAAAATTGAACTTAACATTACATGTCACG
18631327 TGTTCCATACTCTAGTGTAGTGGGATCTCTCATGTATGCTATGGTTTGTTCACATCCAGATTTAT
66 TGTTCCATACTCTAGTGTAGTGGGATCTCTCATGTATGCTATGGTTTGTTCACATCCAGATTTAT
18631392 CATATGCACTCAGTGCAGTTAGCAGATACATGGTGAATC
131 CATATGCACTCAGTGCAGTTAGCAGATACATGGTGAATC
18631431 TC
1 TC
18631433 GGTAAAGAAC
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
169 171 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (169 bp):
TCAACAATTTAATAATTTAATTGAATAAGTTAAGCTCAAAATTGAACTTAACATTACATGTCACG
TGTTCCATACTCTAGTGTAGTGGGATCTCTCATGTATGCTATGGTTTGTTCACATCCAGATTTAT
CATATGCACTCAGTGCAGTTAGCAGATACATGGTGAATC
Found at i:18632100 original size:24 final size:24
Alignment explanation
Indices: 18632066--18632117 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
18632056 TTTCTAGAAG
* * *
18632066 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCACAATAT
*
18632090 ATTTAGCATTTATTAGCACAATAT
1 ATTTAGCATTTATGAGCACAATAT
18632114 ATTT
1 ATTT
18632118 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCACAATAT
Found at i:18648263 original size:13 final size:12
Alignment explanation
Indices: 18648236--18648267 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
18648226 GGTTTTCTCC
18648236 AAAATGAAAAAG
1 AAAATGAAAAAG
18648248 AAAATGAAAAATG
1 AAAATGAAAAA-G
18648261 AAAATGA
1 AAAATGA
18648268 CCTGAAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (12 bp):
AAAATGAAAAAG
Found at i:18648274 original size:57 final size:58
Alignment explanation
Indices: 18648165--18648274 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 58
18648155 GAGAAATGAT
* ** * **
18648165 TATGGTTTTTTTCCAAAATGAAATTGAAAATGGAGAAATGAAATCATTTGAAAACGAA
1 TATGGTTTTTCTCCAAAATGAAAAAGAAAATGGAAAAATGAAATCACCTGAAAACGAA
*
18648223 TATGG-TTTTCTCCAAAATGAAAAAGAAAAT-GAAAAATGAAAATGACCTGAAA
1 TATGGTTTTTCTCCAAAATGAAAAAGAAAATGGAAAAATG-AAATCACCTGAAA
18648275 GTGAATTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
56 7 0.16
57 32 0.73
58 5 0.11
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.27
Consensus pattern (58 bp):
TATGGTTTTTCTCCAAAATGAAAAAGAAAATGGAAAAATGAAATCACCTGAAAACGAA
Found at i:18663138 original size:19 final size:20
Alignment explanation
Indices: 18663114--18663160 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
18663104 GTCGAGAGAG
**
18663114 GAGAGAATGA-TGAATGAGT
1 GAGAGAATGATTGAAAAAGT
18663133 GAGAG-ATGATTGAAAAAGT
1 GAGAGAATGATTGAAAAAGT
18663152 GAGA-AATGA
1 GAGAGAATGA
18663161 GCTCTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19
Consensus pattern (20 bp):
GAGAGAATGATTGAAAAAGT
Found at i:18674172 original size:23 final size:23
Alignment explanation
Indices: 18674142--18674195 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
18674132 AAACCATTGT
*
18674142 TTTATAAACATGCGAAGC-CCTAC
1 TTTATAAACAAGCGAA-CACCTAC
*
18674165 TTTGTAAACAAGCGAACACCTAC
1 TTTATAAACAAGCGAACACCTAC
18674188 TTTATAAA
1 TTTATAAA
18674196 TATACGAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (23 bp):
TTTATAAACAAGCGAACACCTAC
Found at i:18674203 original size:23 final size:22
Alignment explanation
Indices: 18674142--18674205 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
18674132 AAACCATTGT
*
18674142 TTTATAAACATGCGAAGCCCTAC
1 TTTATAAACATACGAA-CCCTAC
*
18674165 TTTGTAAACA-AGCGAACACCTAC
1 TTTATAAACATA-CGAAC-CCTAC
*
18674188 TTTATAAATATACGAACC
1 TTTATAAACATACGAACC
18674206 TCTATTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 2 0.06
23 31 0.91
24 1 0.03
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TTTATAAACATACGAACCCTAC
Found at i:18674335 original size:17 final size:17
Alignment explanation
Indices: 18674309--18674353 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
18674299 TGCCAAGCCA
*
18674309 TGTGCTAACCCTACCAT
1 TGTGCAAACCCTACCAT
18674326 TGTGCAAACCCCTACCAT
1 TGTGCAAA-CCCTACCAT
* *
18674344 AGTGCGAACC
1 TGTGCAAACC
18674354 TTCCCTTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.27, C:0.36, G:0.16, T:0.22
Consensus pattern (17 bp):
TGTGCAAACCCTACCAT
Found at i:18674340 original size:18 final size:18
Alignment explanation
Indices: 18674317--18674353 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18674307 CATGTGCTAA
*
18674317 CCCTACCATTGTGCAAAC
1 CCCTACCATAGTGCAAAC
*
18674335 CCCTACCATAGTGCGAAC
1 CCCTACCATAGTGCAAAC
18674353 C
1 C
18674354 TTCCCTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.41, G:0.14, T:0.19
Consensus pattern (18 bp):
CCCTACCATAGTGCAAAC
Found at i:18674752 original size:21 final size:22
Alignment explanation
Indices: 18674709--18674766 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
18674699 ATTGAATGAG
18674709 ATACAAACCTATGT-TGATTAAC
1 ATACAAACCT-TGTATGATTAAC
*
18674731 ATGCAAACCTTGTATG-TTAAC
1 ATACAAACCTTGTATGATTAAC
*
18674752 ATACAAGCC-TGTATG
1 ATACAAACCTTGTATG
18674767 CGGTATGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 6 0.19
21 15 0.47
22 11 0.34
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (22 bp):
ATACAAACCTTGTATGATTAAC
Found at i:18675322 original size:18 final size:18
Alignment explanation
Indices: 18675299--18675343 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
18675289 ACTACTATTT
*
18675299 TATGTGAGCTGCTTCTTC
1 TATGTGAACTGCTTCTTC
*
18675317 TATGTGAACTGTTTCTT-
1 TATGTGAACTGCTTCTTC
18675334 TCATGTGAAC
1 T-ATGTGAAC
18675344 CGTTATTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (18 bp):
TATGTGAACTGCTTCTTC
Found at i:18675354 original size:17 final size:18
Alignment explanation
Indices: 18675318--18675355 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
18675308 TGCTTCTTCT
* *
18675318 ATGTGAACTGTTTCTTTC
1 ATGTGAACCGTTTATTTC
18675336 ATGTGAACCG-TTATTTC
1 ATGTGAACCGTTTATTTC
18675353 ATG
1 ATG
18675356 CAAGCTGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.45
Consensus pattern (18 bp):
ATGTGAACCGTTTATTTC
Found at i:18675859 original size:48 final size:49
Alignment explanation
Indices: 18675800--18675899 Score: 148
Period size: 48 Copynumber: 2.1 Consensus size: 49
18675790 GGTCATCGAG
*
18675800 GTAAGAATTAGATACTTTATGTGTGATTT-GAAAATAATCATGAGTTTA
1 GTAAGAATTAGATACTTTATATGTGATTTGGAAAATAATCATGAGTTTA
* ** *
18675848 GTAAGACTTAGATGTTTTATATGTGGTTTGGAAAATAATCATGAGTTTA
1 GTAAGAATTAGATACTTTATATGTGATTTGGAAAATAATCATGAGTTTA
18675897 GTA
1 GTA
18675900 TGCATGAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 24 0.52
49 22 0.48
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (49 bp):
GTAAGAATTAGATACTTTATATGTGATTTGGAAAATAATCATGAGTTTA
Found at i:18678204 original size:21 final size:21
Alignment explanation
Indices: 18678164--18678224 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
18678154 CACATTCAAG
* * *
18678164 CTATGGCCCAACATATGGTTA
1 CTATGGCTCAACACAAGGTTA
* *
18678185 TTATGGCTCAACACAAGGTTG
1 CTATGGCTCAACACAAGGTTA
* *
18678206 CTACGGGTCAACACAAGGT
1 CTATGGCTCAACACAAGGT
18678225 ATGGGTCGAC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (21 bp):
CTATGGCTCAACACAAGGTTA
Found at i:18687853 original size:749 final size:749
Alignment explanation
Indices: 18686415--18687914 Score: 2982
Period size: 749 Copynumber: 2.0 Consensus size: 749
18686405 ATCAAATGTT
18686415 AGAAAGGTTAGTTGGTCGCTCACATTTTTGTTTTTTAGATGGCTATTCAGGTTATCTACAGGTAC
1 AGAAAGGTTAGTTGGTCGCTCACATTTTTGTTTTTTAGATGGCTATTCAGGTTATCTACAGGTAC
18686480 CCATCGCACCTGAGGATCAAGAGAAGACCACCTTCACTTGCCCGTTTGGAACTTACGCCTTCAAG
66 CCATCGCACCTGAGGATCAAGAGAAGACCACCTTCACTTGCCCGTTTGGAACTTACGCCTTCAAG
18686545 AGAATGCCTTTCGGATTGTGCAACGCACCAGCCACTTTTCAAATAGGTATAACGAGCATATTTTC
131 AGAATGCCTTTCGGATTGTGCAACGCACCAGCCACTTTTCAAATAGGTATAACGAGCATATTTTC
18686610 AGATTTTATTTCACATTTAAAGGAGGTGTTCATGGATGACTTTACTGTTTATGGTGATTCATTTG
196 AGATTTTATTTCACATTTAAAGGAGGTGTTCATGGATGACTTTACTGTTTATGGTGATTCATTTG
*
18686675 ATCAATGTTTGCATCATCTTGTGTTAGTTCTTAGACGTTGCATTGAGACTAATCTGATATTGAAT
261 ATCAATGTTTGCATCATCTTATGTTAGTTCTTAGACGTTGCATTGAGACTAATCTGATATTGAAT
18686740 TTTGAGAAATGCCATCTCATGGTTGAGAAAGGTGTAGTGTTGGGGCATGTCGTCTCAGTTAAAGG
326 TTTGAGAAATGCCATCTCATGGTTGAGAAAGGTGTAGTGTTGGGGCATGTCGTCTCAGTTAAAGG
18686805 ATTAGAAGTCGACCAAGCCAAAGTCGAGGTAATTAAAAATCTTCCTTATCCAATTACTGTGAAAG
391 ATTAGAAGTCGACCAAGCCAAAGTCGAGGTAATTAAAAATCTTCCTTATCCAATTACTGTGAAAG
18686870 GAATTCGATCCTTCTTGGGACATGTAGGTTTTTACCGTCGGTTCATTAAGAATTTTTCGCAAATA
456 GAATTCGATCCTTCTTGGGACATGTAGGTTTTTACCGTCGGTTCATTAAGAATTTTTCGCAAATA
18686935 TCGTCATCTTTGTGTGCATTGCTAGGTAAGGATGTCGCAGTTGAATTTAATGAGAATTGCAAAAA
521 TCGTCATCTTTGTGTGCATTGCTAGGTAAGGATGTCGCAGTTGAATTTAATGAGAATTGCAAAAA
18687000 ATATTTTAATGAATTGAAATTGAAATTAATCACGGCTCCTATCATTCAAGGACCGAATTATGCAT
586 ATATTTTAATGAATTGAAATTGAAATTAATCACGGCTCCTATCATTCAAGGACCGAATTATGCAT
18687065 TACCCTTAGAGATTTTATGTGATGCTAGTGATAGAGCTGTTGGTGCGGCACTTGGGCAAAGAAAT
651 TACCCTTAGAGATTTTATGTGATGCTAGTGATAGAGCTGTTGGTGCGGCACTTGGGCAAAGAAAT
18687130 GGTAGGGAGTCTTATATTATTAGATATGCTAGTA
716 GGTAGGGAGTCTTATATTATTAGATATGCTAGTA
18687164 AGAAAGGTTAGTTGGTCGCTCACATTTTTGTTTTTTAGATGGCTATTCAGGTTATCTACAGGTAC
1 AGAAAGGTTAGTTGGTCGCTCACATTTTTGTTTTTTAGATGGCTATTCAGGTTATCTACAGGTAC
18687229 CCATCGCACCTGAGGATCAAGAGAAGACCACCTTCACTTGCCCGTTTGGAACTTACGCCTTCAAG
66 CCATCGCACCTGAGGATCAAGAGAAGACCACCTTCACTTGCCCGTTTGGAACTTACGCCTTCAAG
18687294 AGAATGCCTTTCGGATTGTGCAACGCACCAGCCACTTTTCAAATAGGTATAACGAGCATATTTTC
131 AGAATGCCTTTCGGATTGTGCAACGCACCAGCCACTTTTCAAATAGGTATAACGAGCATATTTTC
18687359 AGATTTTATTTCACATTTAAAGGAGGTGTTCATGGATGACTTTACTGTTTATGGTGATTCATTTG
196 AGATTTTATTTCACATTTAAAGGAGGTGTTCATGGATGACTTTACTGTTTATGGTGATTCATTTG
*
18687424 ATCAATTTTTGCATCATCTTATGTTAGTTCTTAGACGTTGCATTGAGACTAATCTGATATTGAAT
261 ATCAATGTTTGCATCATCTTATGTTAGTTCTTAGACGTTGCATTGAGACTAATCTGATATTGAAT
18687489 TTTGAGAAATGCCATCTCATGGTTGAGAAAGGTGTAGTGTTGGGGCATGTCGTCTCAGTTAAAGG
326 TTTGAGAAATGCCATCTCATGGTTGAGAAAGGTGTAGTGTTGGGGCATGTCGTCTCAGTTAAAGG
18687554 ATTAGAAGTCGACCAAGCCAAAGTCGAGGTAATTAAAAATCTTCCTTATCCAATTACTGTGAAAG
391 ATTAGAAGTCGACCAAGCCAAAGTCGAGGTAATTAAAAATCTTCCTTATCCAATTACTGTGAAAG
18687619 GAATTCGATCCTTCTTGGGACATGTAGGTTTTTACCGTCGGTTCATTAAGAATTTTTCGCAAATA
456 GAATTCGATCCTTCTTGGGACATGTAGGTTTTTACCGTCGGTTCATTAAGAATTTTTCGCAAATA
18687684 TCGTCATCTTTGTGTGCATTGCTAGGTAAGGATGTCGCAGTTGAATTTAATGAGAATTGCAAAAA
521 TCGTCATCTTTGTGTGCATTGCTAGGTAAGGATGTCGCAGTTGAATTTAATGAGAATTGCAAAAA
18687749 ATATTTTAATGAATTGAAATTGAAATTAATCACGGCTCCTATCATTCAAGGACCGAATTATGCAT
586 ATATTTTAATGAATTGAAATTGAAATTAATCACGGCTCCTATCATTCAAGGACCGAATTATGCAT
18687814 TACCCTTAGAGATTTTATGTGATGCTAGTGATAGAGCTGTTGGTGCGGCACTTGGGCAAAGAAAT
651 TACCCTTAGAGATTTTATGTGATGCTAGTGATAGAGCTGTTGGTGCGGCACTTGGGCAAAGAAAT
18687879 GGTAGGGAGTCTTATATTATTAGATATGCTAGTA
716 GGTAGGGAGTCTTATATTATTAGATATGCTAGTA
18687913 AG
1 AG
18687915 CTATTAAACC
Statistics
Matches: 749, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
749 749 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (749 bp):
AGAAAGGTTAGTTGGTCGCTCACATTTTTGTTTTTTAGATGGCTATTCAGGTTATCTACAGGTAC
CCATCGCACCTGAGGATCAAGAGAAGACCACCTTCACTTGCCCGTTTGGAACTTACGCCTTCAAG
AGAATGCCTTTCGGATTGTGCAACGCACCAGCCACTTTTCAAATAGGTATAACGAGCATATTTTC
AGATTTTATTTCACATTTAAAGGAGGTGTTCATGGATGACTTTACTGTTTATGGTGATTCATTTG
ATCAATGTTTGCATCATCTTATGTTAGTTCTTAGACGTTGCATTGAGACTAATCTGATATTGAAT
TTTGAGAAATGCCATCTCATGGTTGAGAAAGGTGTAGTGTTGGGGCATGTCGTCTCAGTTAAAGG
ATTAGAAGTCGACCAAGCCAAAGTCGAGGTAATTAAAAATCTTCCTTATCCAATTACTGTGAAAG
GAATTCGATCCTTCTTGGGACATGTAGGTTTTTACCGTCGGTTCATTAAGAATTTTTCGCAAATA
TCGTCATCTTTGTGTGCATTGCTAGGTAAGGATGTCGCAGTTGAATTTAATGAGAATTGCAAAAA
ATATTTTAATGAATTGAAATTGAAATTAATCACGGCTCCTATCATTCAAGGACCGAATTATGCAT
TACCCTTAGAGATTTTATGTGATGCTAGTGATAGAGCTGTTGGTGCGGCACTTGGGCAAAGAAAT
GGTAGGGAGTCTTATATTATTAGATATGCTAGTA
Found at i:18695295 original size:24 final size:24
Alignment explanation
Indices: 18695268--18695319 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
18695258 TTAGTAAGTC
*
18695268 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
18695292 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
18695316 AAAT
1 AAAT
18695320 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:18705605 original size:26 final size:26
Alignment explanation
Indices: 18705576--18705701 Score: 159
Period size: 26 Copynumber: 4.9 Consensus size: 26
18705566 CAGAAAATGA
18705576 AAGCCTTTGTGGCATATCTAAAATAG
1 AAGCCTTTGTGGCATATCTAAAATAG
* *
18705602 AAGCCTTTATGGCATATCTATAATAG
1 AAGCCTTTGTGGCATATCTAAAATAG
* *
18705628 AAGCCTTTGTGGCGTATCTAAAATGG
1 AAGCCTTTGTGGCATATCTAAAATAG
18705654 AAGCCTTTGTGGC-TAATCTAAAAT-G
1 AAGCCTTTGTGGCAT-ATCTAAAATAG
* *
18705679 AAAGTC-TTGTGGCATATGTAAAA
1 -AAGCCTTTGTGGCATATCTAAAA
18705702 GATCAACCCT
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
25 16 0.18
26 73 0.82
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (26 bp):
AAGCCTTTGTGGCATATCTAAAATAG
Found at i:18713182 original size:33 final size:33
Alignment explanation
Indices: 18713128--18713224 Score: 103
Period size: 33 Copynumber: 3.0 Consensus size: 33
18713118 AGCAACAGTC
* * *
18713128 TGGGCCTGAGCCCTA-TTCAGTAATAGTACAATG
1 TGGGCCTAAGCCC-AGTACAGTAACAGTACAATG
*
18713161 TGGGCCTAAGCCCAGTACAGTAACAGT--GA-G
1 TGGGCCTAAGCCCAGTACAGTAACAGTACAATG
*
18713191 TGGGCCTTAGCCCAGTACAGTAAACAGTACAATG
1 TGGGCCTAAGCCCAGTACAGT-AACAGTACAATG
18713225 CAGTTATGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
30 21 0.40
31 7 0.13
32 1 0.02
33 23 0.43
34 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.22
Consensus pattern (33 bp):
TGGGCCTAAGCCCAGTACAGTAACAGTACAATG
Found at i:18713196 original size:30 final size:31
Alignment explanation
Indices: 18713160--18713218 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
18713150 ATAGTACAAT
18713160 GTGGGCCTAAGCCCAGTACAGT-AACAGTGA
1 GTGGGCCTAAGCCCAGTACAGTAAACAGTGA
*
18713190 GTGGGCCTTAGCCCAGTACAGTAAACAGT
1 GTGGGCCTAAGCCCAGTACAGTAAACAGT
18713219 ACAATGCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.19
Consensus pattern (31 bp):
GTGGGCCTAAGCCCAGTACAGTAAACAGTGA
Found at i:18713618 original size:27 final size:27
Alignment explanation
Indices: 18713570--18713711 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 27
18713560 GGGTATAATA
* * * *
18713570 GTCATTTTATCCTTCAAAGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18713597 GTCGTTTTACCCATCGAGGGTATTTTG
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18713624 GTTATTTTACCCATCGATGGTGTTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* * *
18713651 GTAATTTTACCCTTC-AGGGTTTTTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
* *
18713677 ATCATTTTAACCATCGAGGGTA-TTCG
1 GTCATTTTACCCATCGAGGGTATTTCG
18713703 GTCATTTTA
1 GTCATTTTA
18713712 GGCCCATTAC
Statistics
Matches: 93, Mismatches: 21, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
26 32 0.34
27 61 0.66
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCATCGAGGGTATTTCG
Found at i:18714857 original size:12 final size:12
Alignment explanation
Indices: 18714817--18714858 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
18714807 TCCTCCTCAA
18714817 ACTCCATGATTC
1 ACTCCATGATTC
*
18714829 ACTCCCACT-AATC
1 ACT-CCA-TGATTC
18714842 ACTCCATGATTC
1 ACTCCATGATTC
18714854 ACTCC
1 ACTCC
18714859 TTCATTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 14 0.56
13 9 0.36
14 1 0.04
ACGTcount: A:0.26, C:0.40, G:0.05, T:0.29
Consensus pattern (12 bp):
ACTCCATGATTC
Found at i:18716017 original size:39 final size:39
Alignment explanation
Indices: 18715882--18716017 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 39
18715872 CGTTTGGACA
* * *
18715882 AAAAACGCCACTAAAAATCAAGCATTAGCAGCACTTTTAC
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCA-TTTTTC
* *
18715922 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCATTTTT-
1 AAAAACGCCGCTAAAAATCAAGCATTAGC-G-GCATTTTTC
* * *
18715962 GAAAACGTCGCTAAAAAT-AAGCATTAGTGGCATTTTTC
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCATTTTTC
*
18716000 AAAAAGCGCCGCAAAAAA
1 AAAAA-CGCCGCTAAAAA
18716018 CCTAAGCCCA
Statistics
Matches: 79, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
37 8 0.10
38 5 0.06
39 18 0.23
40 41 0.52
41 4 0.05
42 3 0.04
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCGGCATTTTTC
Found at i:18716128 original size:41 final size:41
Alignment explanation
Indices: 18716066--18716329 Score: 367
Period size: 41 Copynumber: 6.6 Consensus size: 41
18716056 CTATAGTGGT
* *
18716066 GTTTTTGAAAAAGCGCCGCTAATGCTGGTACCTTTAGCAGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
* * * * *
18716107 ATTTTTGAACAAGCGCTGCTAATGCTCGTACCTTCAGTGGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
* * *
18716148 GTTTTTGAAAAGGTGCCGCGAATGCTCGTACCTTTAGCGGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
*
18716189 GTTTTTGAAAAAGCGCTGCT-ATGCTC-T---TTTAGCGGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
*
18716225 GTTTTTGAAAAACCGCCGCTAATGCTCGTACCTTTAGCGGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
* *
18716266 GTTTTTGAAGAAGCGCCGCTAATGCTAGTACCTTTAGCGGC
1 GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
18716307 GTTTTTGAAAAAGCGCCGCTAAT
1 GTTTTTGAAAAAGCGCCGCTAAT
18716330 AATAAAATCT
Statistics
Matches: 193, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
36 27 0.14
37 6 0.03
38 1 0.01
39 1 0.01
40 6 0.03
41 152 0.79
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
GTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAGCGGC
Found at i:18716284 original size:118 final size:120
Alignment explanation
Indices: 18716066--18716327 Score: 359
Period size: 118 Copynumber: 2.2 Consensus size: 120
18716056 CTATAGTGGT
* * *
18716066 GTTTTTGAAAAAGCGCCGCTAATGCTGGTACCTTTAGCAGCATTTTTGAACAAGCGCTGCTAATG
1 GTTTTTGAAAAAGCGCCGCT-ATGC--GTACCTTTAGCAGCATTTTTGAAAAACCGCCGCTAATG
* * *
18716131 CTCGTACCTTCAGTGGCGTTTTTGAAAAGGTGCCGCGAATGCTCGTACCTTTAGCGGC
63 CTCGTACCTTCAGCGGCGTTTTTGAAAAGGCGCCGCGAATGCTAGTACCTTTAGCGGC
* * * *
18716189 GTTTTTGAAAAAGCGCTGCTATGC-T-CTTTTAGCGGCGTTTTTGAAAAACCGCCGCTAATGCTC
1 GTTTTTGAAAAAGCGCCGCTATGCGTACCTTTAGCAGCATTTTTGAAAAACCGCCGCTAATGCTC
* *
18716252 GTACCTTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATGCTAGTACCTTTAGCGGC
66 GTACCTTCAGCGGCGTTTTTGAA-AAGGCGCCGCGAATGCTAGTACCTTTAGCGGC
18716307 GTTTTTGAAAAAGCGCCGCTA
1 GTTTTTGAAAAAGCGCCGCTA
18716328 ATAATAAAAT
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
118 99 0.79
119 3 0.02
122 4 0.03
123 19 0.15
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (120 bp):
GTTTTTGAAAAAGCGCCGCTATGCGTACCTTTAGCAGCATTTTTGAAAAACCGCCGCTAATGCTC
GTACCTTCAGCGGCGTTTTTGAAAAGGCGCCGCGAATGCTAGTACCTTTAGCGGC
Found at i:18717141 original size:7 final size:7
Alignment explanation
Indices: 18717129--18717184 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
18717119 TTTTGAGTTC
18717129 AGGGTTT
1 AGGGTTT
18717136 AGGGTTT
1 AGGGTTT
18717143 A-GGTTT
1 AGGGTTT
*
18717149 AGGGCTT
1 AGGGTTT
* *
18717156 GGGGATT
1 AGGGTTT
*
18717163 GGGGTTT
1 AGGGTTT
*
18717170 AAGGTTT
1 AGGGTTT
*
18717177 AGAGTTT
1 AGGGTTT
18717184 A
1 A
18717185 CATTTTAGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 6 0.15
7 34 0.85
ACGTcount: A:0.18, C:0.02, G:0.41, T:0.39
Consensus pattern (7 bp):
AGGGTTT
Found at i:18717494 original size:16 final size:16
Alignment explanation
Indices: 18717473--18717505 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
18717463 AACCATATTT
18717473 TGGACTAGGTGGGTTG
1 TGGACTAGGTGGGTTG
*
18717489 TGGACTAGGTGTGTTG
1 TGGACTAGGTGGGTTG
18717505 T
1 T
18717506 ATGGGTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.45, T:0.36
Consensus pattern (16 bp):
TGGACTAGGTGGGTTG
Found at i:18717616 original size:20 final size:20
Alignment explanation
Indices: 18717594--18717656 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
18717584 TTCGTGATTT
18717594 AAAATTTTAAAATGAATTTTA
1 AAAATTTTAAAATG-ATTTTA
**
18717615 AAAGATTTT-AAATTTTTTTA
1 AAA-ATTTTAAAATGATTTTA
*
18717635 AAAATTTTAAAAAGATTTTA
1 AAAATTTTAAAATGATTTTA
18717655 AA
1 AA
18717657 CTTTTATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.14
20 18 0.51
21 7 0.20
22 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
AAAATTTTAAAATGATTTTA
Found at i:18717624 original size:10 final size:10
Alignment explanation
Indices: 18717597--18717656 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
18717587 GTGATTTAAA
18717597 ATTTTAAAATG
1 ATTTTAAAA-G
18717608 AATTTTAAAAG
1 -ATTTTAAAAG
**
18717619 ATTTTAAATT
1 ATTTTAAAAG
*
18717629 TTTTTAAAA-
1 ATTTTAAAAG
18717638 ATTTTAAAAAG
1 ATTTT-AAAAG
18717649 ATTTTAAA
1 ATTTTAAA
18717657 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 22 0.54
11 6 0.15
12 9 0.22
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:18718031 original size:32 final size:32
Alignment explanation
Indices: 18717994--18718057 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
18717984 AATGAAATAA
18717994 TTTTTTACGGCGTTTTTAAGCAATAGCGGCGT
1 TTTTTTACGGCGTTTTTAAGCAATAGCGGCGT
*
18718026 TTTTTTACGGTGTTTTTAAGCAATAGCGGCGT
1 TTTTTTACGGCGTTTTTAAGCAATAGCGGCGT
18718058 AAAAAACGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (32 bp):
TTTTTTACGGCGTTTTTAAGCAATAGCGGCGT
Found at i:18719337 original size:15 final size:15
Alignment explanation
Indices: 18719319--18719347 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18719309 AGCTTGTATT
18719319 ATTCAGGTAATCACG
1 ATTCAGGTAATCACG
18719334 ATTCAGGTAATCAC
1 ATTCAGGTAATCAC
18719348 TATAATGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (15 bp):
ATTCAGGTAATCACG
Found at i:18721256 original size:16 final size:16
Alignment explanation
Indices: 18721235--18721269 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
18721225 TCAAAAGGTA
*
18721235 TTGCCTTTGTTATATT
1 TTGCCTTTGTTATAAT
18721251 TTGCCTTTGTTATAAT
1 TTGCCTTTGTTATAAT
18721267 TTG
1 TTG
18721270 TCAGTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.14, T:0.60
Consensus pattern (16 bp):
TTGCCTTTGTTATAAT
Found at i:18722658 original size:43 final size:43
Alignment explanation
Indices: 18722591--18722860 Score: 212
Period size: 43 Copynumber: 6.3 Consensus size: 43
18722581 ATGATATGTT
* *
18722591 TTTAGCGGCGTTT-TGGCGAGAAGCGCCGCTAAAGGTCACATTC
1 TTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAGGTCACATTC
*
18722634 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGG-C-CATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACAT--TC
* * * * * *** *
18722677 TATAGTGGCGTTTGTGAGTAAAGCGTCACTAAAGGTCATGGTA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACATTC
* * ***
18722720 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACATTC
* * * *
18722763 TATAGCGGTGTTCGTGAG-AAAGCGTCGCTAAAGGTC-C-TGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACAT--TC
* * * *
18722805 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCATGA-CC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA-CATTC
18722848 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
18722861 ATTTCTAAAA
Statistics
Matches: 179, Mismatches: 37, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
41 3 0.02
42 34 0.19
43 140 0.78
44 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCACATTC
Found at i:18722822 original size:85 final size:86
Alignment explanation
Indices: 18722611--18722859 Score: 324
Period size: 85 Copynumber: 2.9 Consensus size: 86
18722601 TTTTGGCGAG
* ** *
18722611 AAGCGCCGCTAAAGGTCACAT--TCTTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGCCATG
1 AAGCGTCGCTAAAGGTC-C-TGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
* *
18722674 GTCTATAGTGGCGTTTGTGAGTA
64 GTCTATAGCGGCGTTCGTGAGTA
* * * *
18722697 AAGCGTCACTAAAGGTCATGGTATTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
1 AAGCGTCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
*
18722762 CTATAGCGGTGTTCGTGAG-A
66 CTATAGCGGCGTTCGTGAGTA
* **
18722782 AAGCGTCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCATGAC
1 AAGCGTCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
*
18722847 CTTTAGCGGCGTT
66 CTATAGCGGCGTT
18722860 TATTTCTAAA
Statistics
Matches: 141, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
84 1 0.01
85 70 0.50
86 70 0.50
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.26
Consensus pattern (86 bp):
AAGCGTCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
CTATAGCGGCGTTCGTGAGTA
Found at i:18731534 original size:23 final size:23
Alignment explanation
Indices: 18731499--18731596 Score: 115
Period size: 23 Copynumber: 4.3 Consensus size: 23
18731489 ATCCAGATCT
* *
18731499 CGCCCCAAGGGCATTACAGAATA
1 CGCCACAAAGGCATTACAGAATA
* * *
18731522 TGCCACACAGGCATCACAGAATA
1 CGCCACAAAGGCATTACAGAATA
* *
18731545 CGCCATAAAGGCTTTACAGAATA
1 CGCCACAAAGGCATTACAGAATA
* *
18731568 CGCCATAAAGGCTTTACAGAATA
1 CGCCACAAAGGCATTACAGAATA
18731591 CGCCAC
1 CGCCAC
18731597 CTCTACAGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (23 bp):
CGCCACAAAGGCATTACAGAATA
Found at i:18739921 original size:30 final size:30
Alignment explanation
Indices: 18739887--18739948 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
18739877 ACTTATTTTA
18739887 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
18739917 TTGTTAATTTTGTTATTTTTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
18739947 TT
1 TT
18739949 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:18740629 original size:19 final size:19
Alignment explanation
Indices: 18740584--18740629 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
18740574 AAATTCTATC
*
18740584 TAATAAATTTATTATAAAT
1 TAATAAATATATTATAAAT
18740603 T-ATCAAATATATT-TAAAT
1 TAAT-AAATATATTATAAAT
18740621 TAAATAAAT
1 T-AATAAAT
18740630 TACTGAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 8 0.35
19 13 0.57
20 2 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAAATATATTATAAAT
Found at i:18746711 original size:17 final size:17
Alignment explanation
Indices: 18746689--18746758 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 17
18746679 AGGGTTTGGG
18746689 TAAAATTTTTTTAATTT
1 TAAAATTTTTTTAATTT
18746706 TAAAATATTTTTTACATACTTT
1 TAAAAT-TTTTTT--A-A-TTT
**
18746728 TTTAATTTTTTTAATTT
1 TAAAATTTTTTTAATTT
*
18746745 TAAAATATTTTTAA
1 TAAAATTTTTTTAA
18746759 AATACTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
17 20 0.47
18 7 0.16
19 1 0.02
20 1 0.02
21 7 0.16
22 7 0.16
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TAAAATTTTTTTAATTT
Found at i:18746756 original size:11 final size:11
Alignment explanation
Indices: 18746742--18746834 Score: 58
Period size: 11 Copynumber: 8.9 Consensus size: 11
18746732 ATTTTTTTAA
18746742 TTTTAAAATAT
1 TTTTAAAATAT
18746753 TTTTAAAATACT
1 TTTTAAAATA-T
**
18746765 TTTTTTAAT-T
1 TTTTAAAATAT
*
18746775 TTTT----TAA
1 TTTTAAAATAT
18746782 TTTTAAAATAT
1 TTTTAAAATAT
18746793 TTTTAAAATACTT
1 TTTTAAAATA--T
**
18746806 TTTTTTAAT-T
1 TTTTAAAATAT
18746816 TTTT-AAA-AT
1 TTTTAAAATAT
18746825 TTTTAAAATA
1 TTTTAAAATA
18746835 AAAATGGGCC
Statistics
Matches: 64, Mismatches: 7, Indels: 22
0.69 0.08 0.24
Matches are distributed among these distances:
6 1 0.02
7 4 0.06
9 7 0.11
10 13 0.20
11 23 0.36
12 8 0.12
13 8 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:18746769 original size:40 final size:40
Alignment explanation
Indices: 18746692--18746834 Score: 225
Period size: 40 Copynumber: 3.5 Consensus size: 40
18746682 GTTTGGGTAA
* *
18746692 AATTTTTTTAATTTTAAAATATTTTTTACATAC-TTTTTT
1 AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTT
18746731 AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTT
1 AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTT
18746771 AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTT
1 AATTTTTTTAATTTTAAAATATTTTTAAAATAC-TTTTTTT
*
18746812 AATTTTTTAAAATTTTTAAAATA
1 AATTTTTT-TAA-TTTTAAAATA
18746835 AAAATGGGCC
Statistics
Matches: 97, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
39 31 0.32
40 39 0.40
41 15 0.15
42 2 0.02
43 10 0.10
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (40 bp):
AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTT
Found at i:18748406 original size:22 final size:20
Alignment explanation
Indices: 18748379--18748418 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
18748369 AATCCTTTTT
18748379 ATAATACCAAAATTATATAAAA
1 ATAATA-CAAAATT-TATAAAA
*
18748401 ATAATATAAAATTTATAA
1 ATAATACAAAATTTATAA
18748419 TATATATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 6 0.35
22 6 0.35
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAATACAAAATTTATAAAA
Found at i:18751963 original size:20 final size:20
Alignment explanation
Indices: 18751927--18751964 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18751917 TATATTATTA
**
18751927 AAATATTCATATTTTGTACT
1 AAATATTCATAAATTGTACT
18751947 AAATATTCATAAATTGTA
1 AAATATTCATAAATTGTA
18751965 ACATATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATATTCATAAATTGTACT
Found at i:18752058 original size:18 final size:18
Alignment explanation
Indices: 18752018--18752063 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
18752008 TTCTCAGAAT
*
18752018 ATAAAATTATTATTCATA
1 ATAAAATTATTATTCAAA
* * *
18752036 TTAAATTTATTATTTAAA
1 ATAAAATTATTATTCAAA
18752054 ATAAAATTAT
1 ATAAAATTAT
18752064 AATAGTAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATAAAATTATTATTCAAA
Found at i:18755913 original size:50 final size:50
Alignment explanation
Indices: 18755848--18756241 Score: 368
Period size: 50 Copynumber: 7.8 Consensus size: 50
18755838 AGTGAAAGTG
18755848 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
* * * * * *
18755898 AAGGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCGG-ATAGC
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATA-A
* * * * * * * *
18755948 TTCGATCACGTGTGTAGTACTATGTGCAAGCTGCTATGTGTATCGGATATTA
1 AT-GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATAA
*
18756000 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
* * * * * *
18756050 AAGGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTA-CGG-ATAGC
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATA-A
* * * * * * *
18756099 TTCGATCACGTGTGTAGTACTATGTGCAAGCTGA-TATGTGTATCGGATATTA
1 AT-GGTCACGTGTGTAGTACTATGTGTAGGCT-ACTACGTGTACCGGA-ATAA
* *
18756151 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACC-GAA-AA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
* * *
18756199 GTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 --ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTA
18756242 TCGAATGATA
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
48 4 0.01
49 7 0.03
50 151 0.54
51 110 0.40
52 2 0.01
53 4 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAA
Found at i:18756042 original size:102 final size:101
Alignment explanation
Indices: 18755852--18756045 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 101
18755842 AAAGTGATGG
* * *
18755852 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGAATAAAAGGTCACATGTGTAGTAC
*
18755917 TATGTGTAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGTAGGCTACTACGCGTACCGGATAGCTTCGA
* * * * *
18755953 TCACGTGTGTAGTACTATGTGCAAGCTGCTATGTGTATCGGATATTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGA-ATAAAAGGTCACATGTGTAGTA
*
18756018 CTATGTGTAGGCTACTACGTGTACCGGA
65 CTATGTGTAGGCTACTACGCGTACCGGA
18756046 ATAAAAGGTC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 37 0.45
102 45 0.55
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGAATAAAAGGTCACATGTGTAGTAC
TATGTGTAGGCTACTACGCGTACCGGATAGCTTCGA
Found at i:18756068 original size:101 final size:100
Alignment explanation
Indices: 18755850--18756241 Score: 362
Period size: 101 Copynumber: 3.9 Consensus size: 100
18755840 TGAAAGTGAT
* *** * *
18755850 GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATA-AAAGGTCGCATGTGTAG
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATAGTTTGATCACATGTGTAG
* * ***
18755914 TACTATGTGTAGGCTACTATGCGTACCGG-ATAGCTTC
65 TACTATGTGTAGGCTACTACGTGTACCGGAATA--AAA
* * * * * *
18755951 GATCACGTGTGTAGTACTATGTGCAAGCTGCTATGTGTATCGGATA-TTAATGGTCACATGTGTA
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT--TGATCACATGTGTA
18756015 GTACTATGTGTAGGCTACTACGTGTACCGGAATAAAA
64 GTACTATGTGTAGGCTACTACGTGTACCGGAATAAAA
* * * * * * *
18756052 GGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTA-CGGATAGCTTCGATCACGTGTGTAG
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTTGATCACATGTGTAG
* * * * * *
18756116 TACTATGTGCAAGCTGA-TATGTGTATCGGATATTAAT
65 TACTATGTGTAGGCT-ACTACGTGTACCGGA-ATAAAA
* * * *
18756153 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATCACGTGTGTAGT
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTGATCACATGTGTAGT
*
18756218 ACTATGTGAAGGCTACTACGTGTA
66 ACTATGTGTAGGCTACTACGTGTA
18756242 TCGAATGATA
Statistics
Matches: 239, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
100 46 0.19
101 143 0.60
102 47 0.20
103 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (100 bp):
GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTGATCACATGTGTAGT
ACTATGTGTAGGCTACTACGTGTACCGGAATAAAA
Found at i:18756235 original size:151 final size:152
Alignment explanation
Indices: 18755848--18756194 Score: 651
Period size: 151 Copynumber: 2.3 Consensus size: 152
18755838 AGTGAAAGTG
18755848 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTA
18755913 GTACTATGTGTAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAAG
66 GTACTATGTGTAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAAG
*
18755978 CTGCTATGTGTATCGGATATTA
131 CTGATATGTGTATCGGATATTA
*
18756000 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTA
18756065 GTACTATGTGTAGGCTACTATGCGTA-CGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAAG
66 GTACTATGTGTAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAAG
18756129 CTGATATGTGTATCGGATATTA
131 CTGATATGTGTATCGGATATTA
* *
18756151 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCG
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCG
18756195 AAAAGTTTGA
Statistics
Matches: 190, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
151 100 0.53
152 90 0.47
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (152 bp):
ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATAAAAGGTCGCATGTGTA
GTACTATGTGTAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAAG
CTGATATGTGTATCGGATATTA
Found at i:18762391 original size:2 final size:2
Alignment explanation
Indices: 18762379--18762416 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
18762369 AAGAAACAAA
*
18762379 CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
18762417 GTCACATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:18764074 original size:71 final size:72
Alignment explanation
Indices: 18763938--18764076 Score: 226
Period size: 72 Copynumber: 1.9 Consensus size: 72
18763928 AACAGTATCT
* *
18763938 ACTCGTTTTTTGCACCCATGATTGCCTAGTAATTATGTCAGACTTAAAAAAATTAATTCTTTGGG
1 ACTCGTTTTTTGCAACCATGATTGCCTAATAATTATGTCAGACTTAAAAAAATTAATTCTTTGGG
18764003 TTTACCC
66 TTTACCC
* * *
18764010 ACTCGTTTTTTGTAACCATGATTGCCTAATAATTGTGTCAGACTT-AAAAAATTAATTTTTTGGG
1 ACTCGTTTTTTGCAACCATGATTGCCTAATAATTATGTCAGACTTAAAAAAATTAATTCTTTGGG
18764074 TTT
66 TTT
18764077 TGGCCTGTCA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 21 0.34
72 41 0.66
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (72 bp):
ACTCGTTTTTTGCAACCATGATTGCCTAATAATTATGTCAGACTTAAAAAAATTAATTCTTTGGG
TTTACCC
Found at i:18764651 original size:109 final size:110
Alignment explanation
Indices: 18764455--18764777 Score: 521
Period size: 109 Copynumber: 3.0 Consensus size: 110
18764445 CTGGCCTGTC
* * *
18764455 ACTTTTTTCGTATACTGATATCTGATTTTGAAACGAAAAAAAAAGAACTTTTTTTTTAAAATTGT
1 ACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAA-TTTTTTTTTGAAATTGT
*
18764520 ACTGGGTGCCGACCATTGACAGGCCAGCACCCAAATTTTTTATTTTT
65 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTT-TTTTT
* *
18764567 ATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAATA-AA-TTTTTTTTGAAATTGTA
1 ACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAATTTTTTTTTGAAATTGTA
*
18764630 CTGGGTGCTGGCCATTGACAGGCCAGCACCCAAA--TTTTTTTTT
66 CTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTT
18764673 ACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAAGAATTTTTTTTTGAAATTGT
1 ACTTTTTTCGTATACTGATATCTGATTCTGACACG-AAAAAAAAAGAATTTTTTTTTGAAATTGT
18764738 ACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAAATTTTTT
65 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTT
18764778 CTTCTTTTTC
Statistics
Matches: 196, Mismatches: 10, Indels: 12
0.90 0.05 0.06
Matches are distributed among these distances:
106 39 0.20
107 12 0.06
108 7 0.04
109 92 0.47
110 4 0.02
111 2 0.01
112 40 0.20
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (110 bp):
ACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAATTTTTTTTTGAAATTGTA
CTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTT
Done.