Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 70 of 161
Found at i:21740232 original size:18 final size:19
Alignment explanation
Indices: 21740205--21740245 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
21740195 TTTTGAATTT
*
21740205 TTTTATAAA-TATTTTAAA
1 TTTTAGAAATTATTTTAAA
*
21740223 TTTTAGAAATTATTTTGAA
1 TTTTAGAAATTATTTTAAA
21740242 TTTT
1 TTTT
21740246 TGTAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTAGAAATTATTTTAAA
Found at i:21740252 original size:19 final size:19
Alignment explanation
Indices: 21740194--21740252 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
21740184 AAAAATTTAA
* *
21740194 ATTTTGAATTTTTTTATAAAT
1 ATTTTGAA--TTTTTGTAATT
* * *
21740215 ATTTTAAATTTTAGAAATT
1 ATTTTGAATTTTTGTAATT
21740234 ATTTTGAATTTTTGTAATT
1 ATTTTGAATTTTTGTAATT
21740253 TTTGTTGAGA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 23 0.77
21 7 0.23
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
ATTTTGAATTTTTGTAATT
Found at i:21745166 original size:13 final size:13
Alignment explanation
Indices: 21745106--21745182 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
21745096 ACAATCAAAT
21745106 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* * *
21745119 TTTTAAAAAGTAC
1 TTCTCAAAAGCAC
*
21745132 TTCTCAAAAGTAC
1 TTCTCAAAAGCAC
* * *
21745145 TTTTGAAAAACAC
1 TTCTCAAAAGCAC
21745158 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
21745171 TTCTCAAAAGCA
1 TTCTCAAAAGCA
21745183 ATGAAGAACT
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 52 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:21746054 original size:22 final size:21
Alignment explanation
Indices: 21746013--21746055 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
21746003 ATATTCTTAA
*
21746013 TATTTTATTAAAAAATTATAT
1 TATTTTATTAAAAAAGTATAT
21746034 TATTTT-TTAATAATAAGTATAT
1 TATTTTATTAA-AA-AAGTATAT
21746056 ATTGCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TATTTTATTAAAAAAGTATAT
Found at i:21747032 original size:21 final size:21
Alignment explanation
Indices: 21747007--21747084 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
21746997 ATCTTCAAGG
21747007 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
21747028 ATATGCAATCTTAAATATG--
1 ATATGCAATCTTAGATATGAT
21747047 ATATGCAATCTTGGAAGATATGAT
1 ATATGCAATCTT---AGATATGAT
* *
21747071 -TTTGAAATCTTAGA
1 ATATGCAATCTTAGA
21747085 GATTTAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 3 0.06
21 18 0.38
22 6 0.12
23 9 0.19
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:21756089 original size:18 final size:18
Alignment explanation
Indices: 21756027--21756089 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
21756017 CAACAAATAA
*
21756027 TAAAATATA-ATAAAATT
1 TAAAATATATAAAAAATT
*
21756044 TAAAA-ATATAAAAACTT
1 TAAAATATATAAAAAATT
*
21756061 TCAAAATATATAAAAAAAT
1 T-AAAATATATAAAAAATT
21756080 TAAAATATAT
1 TAAAATATAT
21756090 GTAGTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
16 3 0.08
17 12 0.31
18 13 0.33
19 11 0.28
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATATATAAAAAATT
Found at i:21760637 original size:21 final size:20
Alignment explanation
Indices: 21760599--21760637 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
21760589 CATTCTTACA
* *
21760599 TTTTTTTATTTGTTTATACC
1 TTTTTTTATTTATATATACC
21760619 TTTTATTTATTTATATATA
1 TTTT-TTTATTTATATATA
21760638 TTTATTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTTTTATTTATATATACC
Found at i:21763771 original size:25 final size:27
Alignment explanation
Indices: 21763726--21763785 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
21763716 AATTTTCTCG
*
21763726 AAATTTTATTGGGGGCAAAATTGTC-A
1 AAATTTTATTCGGGGCAAAATTGTCAA
*
21763752 AAATTTTA-TCGGGGTAAAATTGTCAA
1 AAATTTTATTCGGGGCAAAATTGTCAA
21763778 AAATTTTA
1 AAATTTTA
21763786 CTAGGGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 14 0.45
26 17 0.55
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.37
Consensus pattern (27 bp):
AAATTTTATTCGGGGCAAAATTGTCAA
Found at i:21763797 original size:25 final size:25
Alignment explanation
Indices: 21763742--21763795 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
21763732 TATTGGGGGC
*
21763742 AAAATTGTCAAAATTTTATCGGGGT
1 AAAATTGTCAAAATTTTATCAGGGT
21763767 AAAATTGTCAAAAATTTTA-CTAGGGT
1 AAAATTGTC-AAAATTTTATC-AGGGT
21763793 AAA
1 AAA
21763796 TTTGGAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33
Consensus pattern (25 bp):
AAAATTGTCAAAATTTTATCAGGGT
Found at i:21775374 original size:28 final size:28
Alignment explanation
Indices: 21775343--21775417 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 28
21775333 AAAACTTTCG
21775343 ATAA-ATAAAAAAAATATTAAATATTAAA
1 ATAATATAAAAAAAATA-TAAATATTAAA
* * **
21775371 ATAATATAATATAAATATATTTATTAAA
1 ATAATATAAAAAAAATATAAATATTAAA
* *
21775399 AT-AT-TAAAAATAATCTAAA
1 ATAATATAAAAAAAATATAAA
21775418 GTTAATTTGG
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
26 9 0.25
27 2 0.06
28 15 0.42
29 10 0.28
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (28 bp):
ATAATATAAAAAAAATATAAATATTAAA
Found at i:21778288 original size:24 final size:24
Alignment explanation
Indices: 21778260--21778320 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
21778250 GTTTTACAAT
* * *
21778260 AAATATAAATAAATTTTATTTAAA
1 AAATATAAATAAATTATAATCAAA
* *
21778284 AAATA-AATATTAATTATAATCAAT
1 AAATATAA-ATAAATTATAATCAAA
21778308 AAATATAAATAAA
1 AAATATAAATAAA
21778321 ATACAAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 2 0.07
24 25 0.86
25 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAATATAAATAAATTATAATCAAA
Found at i:21782826 original size:18 final size:18
Alignment explanation
Indices: 21782777--21782862 Score: 84
Period size: 18 Copynumber: 4.8 Consensus size: 18
21782767 AAAAAACATA
**
21782777 TAATTCGGGCAATTCGAGG
1 TAATTCGGTTAATTCG-GG
** *
21782796 -AATTCGGGGAATTCGGT
1 TAATTCGGTTAATTCGGG
*
21782813 TAAGTCGGTTAATTCGGG
1 TAATTCGGTTAATTCGGG
*
21782831 TAATTCGATTAATTCGGG
1 TAATTCGGTTAATTCGGG
*
21782849 TAATTTGGTTAATT
1 TAATTCGGTTAATT
21782863 TTTAACCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
17 1 0.02
18 55 0.98
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (18 bp):
TAATTCGGTTAATTCGGG
Found at i:21782834 original size:9 final size:9
Alignment explanation
Indices: 21782777--21782853 Score: 75
Period size: 9 Copynumber: 8.6 Consensus size: 9
21782767 AAAAAACATA
21782777 TAATTCGGG
1 TAATTCGGG
*
21782786 CAATTCGAGG
1 TAATTCG-GG
21782796 -AATTCGGG
1 TAATTCGGG
* *
21782804 GAATTCGGT
1 TAATTCGGG
* *
21782813 TAAGTCGGT
1 TAATTCGGG
21782822 TAATTCGGG
1 TAATTCGGG
**
21782831 TAATTCGAT
1 TAATTCGGG
21782840 TAATTCGGG
1 TAATTCGGG
21782849 TAATT
1 TAATT
21782854 TGGTTAATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 2 0.04
9 52 0.93
10 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (9 bp):
TAATTCGGG
Found at i:21782861 original size:27 final size:27
Alignment explanation
Indices: 21782796--21782862 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
21782786 CAATTCGAGG
* * *
21782796 AATTCGGGGAATTCGGTTAAGTCGGTT
1 AATTCGGGTAATTCGATTAAGTCGGGT
*
21782823 AATTCGGGTAATTCGATTAATTCGGGT
1 AATTCGGGTAATTCGATTAAGTCGGGT
* *
21782850 AATTTGGTTAATT
1 AATTCGGGTAATT
21782863 TTTAACCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (27 bp):
AATTCGGGTAATTCGATTAAGTCGGGT
Found at i:21782863 original size:9 final size:9
Alignment explanation
Indices: 21782805--21782862 Score: 71
Period size: 9 Copynumber: 6.4 Consensus size: 9
21782795 GAATTCGGGG
21782805 AATTCGGTT
1 AATTCGGTT
*
21782814 AAGTCGGTT
1 AATTCGGTT
*
21782823 AATTCGGGT
1 AATTCGGTT
*
21782832 AATTCGATT
1 AATTCGGTT
*
21782841 AATTCGGGT
1 AATTCGGTT
*
21782850 AATTTGGTT
1 AATTCGGTT
21782859 AATT
1 AATT
21782863 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:21782935 original size:18 final size:18
Alignment explanation
Indices: 21782886--21782971 Score: 84
Period size: 18 Copynumber: 4.8 Consensus size: 18
21782876 AAAAAACATA
**
21782886 TAATTCGGGCAATTCGAGG
1 TAATTCGGTTAATTCG-GG
** *
21782905 -AATTCGGGGAATTCGGT
1 TAATTCGGTTAATTCGGG
*
21782922 TAAGTCGGTTAATTCGGG
1 TAATTCGGTTAATTCGGG
*
21782940 TAATTCGATTAATTCGGG
1 TAATTCGGTTAATTCGGG
*
21782958 TAATTTGGTTAATT
1 TAATTCGGTTAATT
21782972 TTTAACCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
17 1 0.02
18 55 0.98
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (18 bp):
TAATTCGGTTAATTCGGG
Found at i:21782943 original size:9 final size:9
Alignment explanation
Indices: 21782886--21782962 Score: 75
Period size: 9 Copynumber: 8.6 Consensus size: 9
21782876 AAAAAACATA
21782886 TAATTCGGG
1 TAATTCGGG
*
21782895 CAATTCGAGG
1 TAATTCG-GG
21782905 -AATTCGGG
1 TAATTCGGG
* *
21782913 GAATTCGGT
1 TAATTCGGG
* *
21782922 TAAGTCGGT
1 TAATTCGGG
21782931 TAATTCGGG
1 TAATTCGGG
**
21782940 TAATTCGAT
1 TAATTCGGG
21782949 TAATTCGGG
1 TAATTCGGG
21782958 TAATT
1 TAATT
21782963 TGGTTAATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 2 0.04
9 52 0.93
10 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (9 bp):
TAATTCGGG
Found at i:21782952 original size:109 final size:109
Alignment explanation
Indices: 21782761--21782999 Score: 478
Period size: 109 Copynumber: 2.2 Consensus size: 109
21782751 ACTAAAGTCT
21782761 AAAAATAAAAAACATATAATTCGGGCAATTCGAGGAATTCGGGGAATTCGGTTAAGTCGGTTAAT
1 AAAAATAAAAAACATATAATTCGGGCAATTCGAGGAATTCGGGGAATTCGGTTAAGTCGGTTAAT
21782826 TCGGGTAATTCGATTAATTCGGGTAATTTGGTTAATTTTTAACC
66 TCGGGTAATTCGATTAATTCGGGTAATTTGGTTAATTTTTAACC
21782870 AAAAATAAAAAACATATAATTCGGGCAATTCGAGGAATTCGGGGAATTCGGTTAAGTCGGTTAAT
1 AAAAATAAAAAACATATAATTCGGGCAATTCGAGGAATTCGGGGAATTCGGTTAAGTCGGTTAAT
21782935 TCGGGTAATTCGATTAATTCGGGTAATTTGGTTAATTTTTAACC
66 TCGGGTAATTCGATTAATTCGGGTAATTTGGTTAATTTTTAACC
21782979 AAAAATAAAAAACATATAATT
1 AAAAATAAAAAACATATAATT
21783000 TTCAGTTAAT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 130 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (109 bp):
AAAAATAAAAAACATATAATTCGGGCAATTCGAGGAATTCGGGGAATTCGGTTAAGTCGGTTAAT
TCGGGTAATTCGATTAATTCGGGTAATTTGGTTAATTTTTAACC
Found at i:21782970 original size:27 final size:27
Alignment explanation
Indices: 21782905--21782971 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
21782895 CAATTCGAGG
* * *
21782905 AATTCGGGGAATTCGGTTAAGTCGGTT
1 AATTCGGGTAATTCGATTAAGTCGGGT
*
21782932 AATTCGGGTAATTCGATTAATTCGGGT
1 AATTCGGGTAATTCGATTAAGTCGGGT
* *
21782959 AATTTGGTTAATT
1 AATTCGGGTAATT
21782972 TTTAACCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (27 bp):
AATTCGGGTAATTCGATTAAGTCGGGT
Found at i:21782972 original size:9 final size:9
Alignment explanation
Indices: 21782914--21782971 Score: 71
Period size: 9 Copynumber: 6.4 Consensus size: 9
21782904 GAATTCGGGG
21782914 AATTCGGTT
1 AATTCGGTT
*
21782923 AAGTCGGTT
1 AATTCGGTT
*
21782932 AATTCGGGT
1 AATTCGGTT
*
21782941 AATTCGATT
1 AATTCGGTT
*
21782950 AATTCGGGT
1 AATTCGGTT
*
21782959 AATTTGGTT
1 AATTCGGTT
21782968 AATT
1 AATT
21782972 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:21787370 original size:9 final size:10
Alignment explanation
Indices: 21787358--21787395 Score: 62
Period size: 9 Copynumber: 4.0 Consensus size: 10
21787348 TTTTTCTTTT
21787358 TTCCCTT-CC
1 TTCCCTTCCC
21787367 TTCCCTTCCC
1 TTCCCTTCCC
21787377 TT-CCTTCCC
1 TTCCCTTCCC
21787386 TTCCCTTCCC
1 TTCCCTTCCC
21787396 GTTCTCTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 16 0.59
10 11 0.41
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (10 bp):
TTCCCTTCCC
Found at i:21787377 original size:14 final size:14
Alignment explanation
Indices: 21787358--21787394 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
21787348 TTTTTCTTTT
21787358 TTCCCTTCCTTCCC
1 TTCCCTTCCTTCCC
21787372 TTCCCTTCCTTCCC
1 TTCCCTTCCTTCCC
21787386 TTCCCTTCC
1 TTCCCTTCC
21787395 CGTTCTCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (14 bp):
TTCCCTTCCTTCCC
Found at i:21787405 original size:5 final size:5
Alignment explanation
Indices: 21787358--21787395 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
21787348 TTTTTCTTTT
21787358 TTCCC TT-CC TTCCC TTCCC TT-CC TTCCC TTCCC TTCCC
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
21787396 GTTCTCTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
TTCCC
Found at i:21800576 original size:15 final size:17
Alignment explanation
Indices: 21800542--21800579 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
21800532 ACATTAAAAG
*
21800542 TTATATTAATTGTTATA
1 TTATATTAATTGTAATA
21800559 TTATATT-A-TGTAATA
1 TTATATTAATTGTAATA
21800574 TTATAT
1 TTATAT
21800580 CCATATCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 1 0.05
17 7 0.35
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (17 bp):
TTATATTAATTGTAATA
Found at i:21802229 original size:17 final size:17
Alignment explanation
Indices: 21802200--21802237 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
21802190 GTATTATTAA
21802200 ATTA-ATATATTATATC
1 ATTATATATATTATATC
* *
21802216 ATTATATATTTTATATT
1 ATTATATATATTATATC
21802233 ATTAT
1 ATTAT
21802238 TCTATTCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTATATATATTATATC
Found at i:21808954 original size:13 final size:13
Alignment explanation
Indices: 21808936--21808962 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21808926 GGAGCAATCG
21808936 CACACGGGTGTGT
1 CACACGGGTGTGT
21808949 CACACGGGTGTGT
1 CACACGGGTGTGT
21808962 C
1 C
21808963 CTTGTCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:21816574 original size:40 final size:40
Alignment explanation
Indices: 21816519--21816882 Score: 602
Period size: 40 Copynumber: 9.1 Consensus size: 40
21816509 NNNNNNNNNN
* *
21816519 ATATCATCTCGCATAATTGCCTTCGGGTTTTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* *
21816559 ATATCATCTCGCATAATTGCCTTCGGGTTTTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* * *
21816599 ATATCATCTCGCATAATTGCCTTCGGGTCATAGCCCGGAC
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* *
21816639 ATATTAACTCGCATAATTGCTTTCGGGTCTTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
21816679 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* *
21816719 ATATCATCTCGCATAATTGCCTTCGGGTCCTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
21816759 ATATCAACTCGCATAATTGCCTTCGGGTCCTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
21816799 ATATCAACTCGCATAATTGCCTTCGGGTCCTAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
21816839 ATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGAT
1 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
21816879 ATAT
1 ATAT
21816883 TCCAATGCTC
Statistics
Matches: 310, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 310 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
Found at i:21821062 original size:21 final size:22
Alignment explanation
Indices: 21821036--21821076 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
21821026 ATGAAGTTTA
*
21821036 AACAAACTAGAT-TAAAATAAT
1 AACAAACTACATATAAAATAAT
*
21821057 AACAAATTACATATAAAATA
1 AACAAACTACATATAAAATA
21821077 TCAAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.24
Consensus pattern (22 bp):
AACAAACTACATATAAAATAAT
Found at i:21828487 original size:19 final size:18
Alignment explanation
Indices: 21828459--21828496 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
21828449 TATGTTTTAG
21828459 AAAAAGAAGAAGGAAAAAAT
1 AAAAAGAAG-A-GAAAAAAT
21828479 AAAAA-AAGAGAAAAAAT
1 AAAAAGAAGAGAAAAAAT
21828496 A
1 A
21828497 CAAATAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 3 0.17
20 5 0.28
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (18 bp):
AAAAAGAAGAGAAAAAAT
Found at i:21849170 original size:29 final size:28
Alignment explanation
Indices: 21849014--21849226 Score: 112
Period size: 29 Copynumber: 7.3 Consensus size: 28
21849004 ATCGATTATA
* * *
21849014 AAAAGGGATGGTAATGATCATCAACGATG
1 AAAAGGGATGGTGATGACCATCAA-TATG
* * *
21849043 AAAAGGGGTGGTGACGACCATCAAGTGTG
1 AAAAGGGATGGTGATGACCATCAA-TATG
* * *
21849072 AAAAGGGATAG-CATCGACTATCGAATATG
1 AAAAGGGATGGTGAT-GACCATC-AATATG
** * * *
21849101 AAAAATGATAGCT--TCGACTATCGATTAATG
1 AAAAGGGAT-GGTGAT-GACCATC-AAT-ATG
21849131 AAAAGGGATGGTGATGACCATCAACTATG
1 AAAAGGGATGGTGATGACCATCAA-TATG
* *
21849160 AAAAGGGATGGTGA-GAACCATTGATTAATG
1 AAAAGGGATGGTGATG-ACCA-TCAAT-ATG
*
21849190 AAAAGGGATGGT-TTCGACCATCGAATATG
1 AAAAGGGATGGTGAT-GACCATC-AATATG
21849219 AAAAGGGA
1 AAAAGGGA
21849227 CGGTTACAAC
Statistics
Matches: 142, Mismatches: 28, Indels: 28
0.72 0.14 0.14
Matches are distributed among these distances:
28 2 0.01
29 96 0.68
30 42 0.30
31 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.28, T:0.22
Consensus pattern (28 bp):
AAAAGGGATGGTGATGACCATCAATATG
Found at i:21849186 original size:59 final size:59
Alignment explanation
Indices: 21849123--21849241 Score: 170
Period size: 59 Copynumber: 2.0 Consensus size: 59
21849113 TTCGACTATC
* *
21849123 GATTAATGAAAAGGGATGGTGAT-GACCATC-AACTATGAAAAGGGATGGTGAGAACCATT
1 GATTAATGAAAAGGGATGGT-ATCGACCATCGAA-TATGAAAAGGGACGGTGACAACCATT
* *
21849182 GATTAATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGACGGTTACAACCATT
1 GATTAATGAAAAGGGATGGTATCGACCATCGAATATGAAAAGGGACGGTGACAACCATT
21849241 G
1 G
21849242 TTTAGCACAC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
58 1 0.02
59 51 0.94
60 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.23
Consensus pattern (59 bp):
GATTAATGAAAAGGGATGGTATCGACCATCGAATATGAAAAGGGACGGTGACAACCATT
Found at i:21849193 original size:30 final size:30
Alignment explanation
Indices: 21849120--21849226 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 30
21849110 AGCTTCGACT
21849120 ATCGATTAATGAAAAGGGATGGTGATGACC
1 ATCGATTAATGAAAAGGGATGGTGATGACC
* *
21849150 ATCAACT-ATGAAAAGGGATGGTGA-GAACC
1 ATCGATTAATGAAAAGGGATGGTGATG-ACC
* *
21849179 ATTGATTAATGAAAAGGGATGGT-TTCGACC
1 ATCGATTAATGAAAAGGGATGGTGAT-GACC
*
21849209 ATCGAAT-ATGAAAAGGGA
1 ATCGATTAATGAAAAGGGA
21849227 CGGTTACAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.02
29 35 0.54
30 28 0.43
31 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.28, T:0.22
Consensus pattern (30 bp):
ATCGATTAATGAAAAGGGATGGTGATGACC
Found at i:21849231 original size:29 final size:29
Alignment explanation
Indices: 21849040--21849231 Score: 122
Period size: 29 Copynumber: 6.6 Consensus size: 29
21849030 ATCATCAACG
* **
21849040 ATGAAAAGGGGTGGTGACGACCATC-AAGT
1 ATGAAAAGGGATGGTTTCGACCATCGAA-T
* * ** *
21849069 GTGAAAAGGGATAGCATCGACTATCGAAT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
** * * * *
21849098 ATGAAAAATGATAGCTTCGACTATCGATT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
*
21849127 AATGAAAAGGGATGGTGAT-GACCATC-AACT
1 -ATGAAAAGGGATGGT-TTCGACCATCGAA-T
** * *
21849157 ATGAAAAGGGATGG-TGAGAACCATTGATT
1 ATGAAAAGGGATGGTTTCG-ACCATCGAAT
21849186 AATGAAAAGGGATGGTTTCGACCATCGAAT
1 -ATGAAAAGGGATGGTTTCGACCATCGAAT
*
21849216 ATGAAAAGGGACGGTT
1 ATGAAAAGGGATGGTT
21849232 ACAACCATTG
Statistics
Matches: 126, Mismatches: 28, Indels: 18
0.73 0.16 0.10
Matches are distributed among these distances:
28 1 0.01
29 79 0.63
30 43 0.34
31 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTCGACCATCGAAT
Found at i:21862412 original size:10 final size:10
Alignment explanation
Indices: 21862397--21862427 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
21862387 ATATTTATTT
*
21862397 TTATATTATA
1 TTATATAATA
21862407 TTATATAATA
1 TTATATAATA
21862417 TTATATAATA
1 TTATATAATA
21862427 T
1 T
21862428 AAAAATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
TTATATAATA
Found at i:21862419 original size:15 final size:15
Alignment explanation
Indices: 21862399--21862443 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
21862389 ATTTATTTTT
21862399 ATATTATATTATATA
1 ATATTATATTATATA
*
21862414 ATATTATATAATATAA
1 ATATTATATTATAT-A
*
21862430 AAATTA-ATTATATA
1 ATATTATATTATATA
21862444 TTAAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.04
15 19 0.73
16 6 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATTATATTATATA
Found at i:21865931 original size:27 final size:27
Alignment explanation
Indices: 21865900--21866077 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21865890 TAAATTGTAC
21865900 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21865927 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21865953 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21865981 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21866009 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21866036 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21866063 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21866078 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21866014 original size:82 final size:81
Alignment explanation
Indices: 21865901--21866056 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21865891 AAATTGTACA
* *
21865901 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21865965 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21865982 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21866047 TGCGAGTTGA
65 TGCGAATTGA
21866057 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21866068 original size:82 final size:81
Alignment explanation
Indices: 21865897--21866077 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21865887 GATTAAATTG
* *
21865897 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21865962 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21865978 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21866042 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21866060 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21866078 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21873994 original size:27 final size:27
Alignment explanation
Indices: 21873963--21874140 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21873953 TAAATTGTAC
21873963 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21873990 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21874016 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21874044 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21874072 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21874099 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21874126 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21874141 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21874077 original size:82 final size:81
Alignment explanation
Indices: 21873964--21874119 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21873954 AAATTGTACA
* *
21873964 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21874028 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21874045 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21874110 TGCGAGTTGA
65 TGCGAATTGA
21874120 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21874131 original size:82 final size:81
Alignment explanation
Indices: 21873960--21874140 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21873950 GATTAAATTG
* *
21873960 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21874025 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21874041 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21874105 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21874123 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21874141 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21883581 original size:138 final size:138
Alignment explanation
Indices: 21883421--21884235 Score: 1168
Period size: 138 Copynumber: 5.9 Consensus size: 138
21883411 TATGTTCTCT
* *
21883421 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACTGAATTTATTAATATAAACAGTTATAT
1 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
* * ** *
21883486 TAATTAATTTCGGTCAAAATTTAAAAGAAATGGGAATTAATATTCTTTTGGAAAGAATGTAATTA
66 TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
21883551 ATATATGA
131 ATATATGA
* * * *
21883559 ATTTGATTAATACAAAATATTAATTTTATATATTTTACCAAATTTATTAATATAAACAATTACAT
1 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
* * * *
21883624 TAATTAATTTCGGTCAAAATATAAAAGACGTGAAAATTATTATTC-TTTGCAAAGAAAATAATTA
66 TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
21883688 ATATATGA
131 ATATATGA
* * *
21883696 ATTTGATTCATGCAAAATATTAATTATATATAT-TTTTACCGAATTTATTAATATAAACTATTAG
1 ATTTGATTCATACAAAATATTAATT-T-TATATGTTTTACCGAATTTATTAATATAAACAATTAT
* *
21883760 ATTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAGTATTCTTTTGGAAAGAATATAAT
64 ATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAAT
21883825 TAATATATGA
129 TAATATATGA
* * * * *
21883835 ATTTGATTCATACAAAATACTAATTGTATATGTTTTACCAAATTTATTAATATAAAAAATTACAT
1 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
* * * * * *
21883900 TAATTAATTTTGGTCAAAATATGAAAGAAATGGAAATTAAAATTC-TTTGGAAAGAAAATAATTA
66 TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
21883964 ATATATGA
131 ATATATGA
* *
21883972 ATTGGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAGTTATAT
1 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
*
21884037 TAATTAATTTCGGTCAAAATATAAAAGGCATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
66 TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
21884102 ATATATGA
131 ATATATGA
* * ** * * * *
21884110 ATTTGATTCATACAAAATAATAATTGTATACATTTTACCGAAATTAATAACATAAATAATTATAT
1 ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
** * * *
21884175 TAATTAATTTTTGTCAAAATATAAAAGGCGTGGAAATTAATATTCTTTTGGAAAGAATATA
66 TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATA
21884236 GTTTCTTTTT
Statistics
Matches: 604, Mismatches: 68, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
137 175 0.29
138 376 0.62
139 53 0.09
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
ATTTGATTCATACAAAATATTAATTTTATATGTTTTACCGAATTTATTAATATAAACAATTATAT
TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTA
ATATATGA
Found at i:21891005 original size:138 final size:138
Alignment explanation
Indices: 21890751--21891437 Score: 939
Period size: 138 Copynumber: 5.0 Consensus size: 138
21890741 AGATATATAA
* * **
21890751 ATAATTAATATATGAATTTGATTAATACAAAATATTAACTGTATATATTTTAC-CGA---A--AA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTATTAA
* * *
21890810 TATAAACAATTATATTAATTGATTTAGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
66 TATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
21890875 GAAAGAAT
131 GAAAGAAT
* *
21890883 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTGCAAAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTATTAA
* * * * *
21890948 TATGAACGGTTATATTTATTAATTTCGGTCATAATATAAAAGATATGAAAATTAATATTCTTTTG
66 TATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
*
21891013 AAAAGAAT
131 GAAAGAAT
* **
21891021 ATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTCA-ATATTTTACCGAATTTATTA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGT-ATATATTTTACAAAATTTATTA
* * * *
21891085 ATATATACAGTTACATAAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
65 ATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
21891150 GGAAATG-AT
130 GGAAA-GAAT
**
21891159 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTATTAA
* ** * * * *
21891224 TATAAAAAACTATATTAATTAATTTTGATCAAAATATAAAACACATGAAAATTAATATTCTTATG
66 TATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
*
21891289 GAAATAAT
131 GAAAGAAT
* *
21891297 ATAATTAATATATGAATTTGATTCATACATATTATTAATTGTATATATTTTATC-AAATTTATTA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CAAAATTTATTA
*
21891361 ATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAG--AT-AAAATTAATATTCTTTT
65 ATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
*
21891423 GGAAAGTAT
130 GGAAAGAAT
21891432 ATAATT
1 ATAATT
21891438 CGTTTTTCTA
Statistics
Matches: 488, Mismatches: 56, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
132 49 0.10
133 1 0.00
135 29 0.06
136 3 0.01
137 1 0.00
138 402 0.82
139 3 0.01
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTATTAA
TATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
GAAAGAAT
Found at i:21903306 original size:10 final size:10
Alignment explanation
Indices: 21903265--21903312 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 10
21903255 TTACTCATTT
21903265 TTTCTTCTTTC
1 TTTCTT-TTTC
21903276 TTTCCTTTTT-
1 TTT-CTTTTTC
21903286 TTTCTGGTTTTC
1 TTTCT--TTTTC
21903298 TTTCTTTTTC
1 TTTCTTTTTC
21903308 TTTCT
1 TTTCT
21903313 CACTTTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
9 2 0.06
10 13 0.39
11 10 0.30
12 8 0.24
ACGTcount: A:0.00, C:0.21, G:0.04, T:0.75
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:21910307 original size:30 final size:30
Alignment explanation
Indices: 21910263--21910527 Score: 419
Period size: 30 Copynumber: 8.9 Consensus size: 30
21910253 GGCAATATAT
21910263 ATGTATA--CATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
21910291 ATGTCTATCTATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
21910321 ATGTATATCCATATACAAGTCAATTTGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
21910351 ATGTATATCCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
21910381 ATGTATATCCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* * *
21910411 ACGTATATCTATATACAAATCAATTCGGTA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
21910441 ACGTATATCCATATACAAATCAATTCGGTA
1 ATGTATATCCATATACAAATCAATTCGGCA
21910471 ATGTATATCCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
21910501 ATGTATACCCATATAC-AATCAATTCGG
1 ATGTATATCCATATACAAATCAATTCGG
21910528 AAATAAATAA
Statistics
Matches: 220, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
28 6 0.03
29 11 0.05
30 203 0.92
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (30 bp):
ATGTATATCCATATACAAATCAATTCGGCA
Found at i:21915861 original size:16 final size:16
Alignment explanation
Indices: 21915842--21915875 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
21915832 ATTATTACTT
21915842 TTATACACTATTTCAA
1 TTATACACTATTTCAA
**
21915858 TTATATGCTATTTCAA
1 TTATACACTATTTCAA
21915874 TT
1 TT
21915876 TATTACTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.15, G:0.03, T:0.50
Consensus pattern (16 bp):
TTATACACTATTTCAA
Found at i:21916480 original size:309 final size:309
Alignment explanation
Indices: 21915921--21916542 Score: 1163
Period size: 309 Copynumber: 2.0 Consensus size: 309
21915911 ATTACACTTC
21915921 AATTTTGTAACAGCGAAGTATTGCATCCAATAATGTTCCTTCAACAATTCAAACGTTTATACAAC
1 AATTTTGTAACAGCGAAGTATTGCATCCAATAATGTTCCTTCAACAATTCAAACGTTTATACAAC
*
21915986 ACAATTGCTTATTCGAATGTGTCAAATGAAGTGATCAATTTATTATTAACCCCTTTTGTTCTTAG
66 ACAATTGCTTATTCGAAGGTGTCAAATGAAGTGATCAATTTATTATTAACCCCTTTTGTTCTTAG
* *
21916051 AGGTGAAGCCAAGGTGTGGTTGGAAGCCTTCACTACTTGGGATGCATTTGTGTCACTATTCTTGA
131 AGGTGAAGCCAAGGTGTGGTTGGAAGCCTTCACTACTTGGGATGAATTTGTGTAACTATTCTTGA
* *
21916116 GCCGAAACATACCAATGACGGCAGTCCTCCATGCCTAGGAATTGTTTGGTTTCAAGCAAGATCCA
196 GCCGAAACATACCAATGACGCCAGTCCTCCATGCCTAGGAATTGTTTGATTTCAAGCAAGATCCA
21916181 ATAGAGACTTTGGGGCAAGCATGGGATAAGTTTAAGACGATTCTCTGAA
261 ATAGAGACTTTGGGGCAAGCATGGGATAAGTTTAAGACGATTCTCTGAA
*
21916230 AATTTTGTAACAGCGAAGTATTGCATCCAATAATGTTCCTTCAACAATTCAAATGTTTATACAAC
1 AATTTTGTAACAGCGAAGTATTGCATCCAATAATGTTCCTTCAACAATTCAAACGTTTATACAAC
* *
21916295 ACAATTGCTTATTCGAGGGTGTCAAATGAAGTGATCAATTTATTATTAACCCCTTTTGTTCTTGG
66 ACAATTGCTTATTCGAAGGTGTCAAATGAAGTGATCAATTTATTATTAACCCCTTTTGTTCTTAG
21916360 AGGTGAAGCCAAGGTGTGGTTGGAAGCCTTCACTACTTGGGATGAATTTGTGTAACTATTCTTGA
131 AGGTGAAGCCAAGGTGTGGTTGGAAGCCTTCACTACTTGGGATGAATTTGTGTAACTATTCTTGA
*
21916425 GCCGAAACATACCAATGACGCCAGTCCTCCATGCCTCGGAATTGTTTGATTTCAAGCAAGATCCA
196 GCCGAAACATACCAATGACGCCAGTCCTCCATGCCTAGGAATTGTTTGATTTCAAGCAAGATCCA
21916490 ATAGAGACTTTGGGGCAAGCATGGGATAAGTTTAAGACGATTCTCTGAA
261 ATAGAGACTTTGGGGCAAGCATGGGATAAGTTTAAGACGATTCTCTGAA
21916539 AATT
1 AATT
21916543 CATTGGGGTG
Statistics
Matches: 304, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
309 304 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (309 bp):
AATTTTGTAACAGCGAAGTATTGCATCCAATAATGTTCCTTCAACAATTCAAACGTTTATACAAC
ACAATTGCTTATTCGAAGGTGTCAAATGAAGTGATCAATTTATTATTAACCCCTTTTGTTCTTAG
AGGTGAAGCCAAGGTGTGGTTGGAAGCCTTCACTACTTGGGATGAATTTGTGTAACTATTCTTGA
GCCGAAACATACCAATGACGCCAGTCCTCCATGCCTAGGAATTGTTTGATTTCAAGCAAGATCCA
ATAGAGACTTTGGGGCAAGCATGGGATAAGTTTAAGACGATTCTCTGAA
Found at i:21928543 original size:41 final size:41
Alignment explanation
Indices: 21928505--21928653 Score: 174
Period size: 41 Copynumber: 3.6 Consensus size: 41
21928495 TTATGCCATC
* * * *
21928505 ATATTTACTTTGGTGTAACCGATGATGTACTATGTGCCAAT
1 ATATTTACTTTGGTTTATCCGATGATATACTATGTGCCAGT
** * * *
21928546 ATATTTACTTCAGTTTATTCGATGATACACTATGTGCTAGT
1 ATATTTACTTTGGTTTATCCGATGATATACTATGTGCCAGT
* * *
21928587 ATATTTA-TTTCTGTTTATTCGATGATATACTATGTGCTAGT
1 ATATTTACTTT-GGTTTATCCGATGATATACTATGTGCCAGT
21928628 ATATTTACTTTGGTTTATCCGATGAT
1 ATATTTACTTTGGTTTATCCGATGAT
21928654 GCACTGAGGT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
40 2 0.02
41 87 0.95
42 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.46
Consensus pattern (41 bp):
ATATTTACTTTGGTTTATCCGATGATATACTATGTGCCAGT
Found at i:21928593 original size:82 final size:82
Alignment explanation
Indices: 21928505--21928658 Score: 193
Period size: 82 Copynumber: 1.9 Consensus size: 82
21928495 TTATGCCATC
* *
21928505 ATATTTACTTT-GGTGTAACCGATGATGTACTATGTGCCAATATATTTACTTCAGTTTATTCGAT
1 ATATTTA-TTTCGGTGTAACCGATGATATACTATGTGCCAATATATTTACTTCAGTTTATCCGAT
21928569 GATACACTATGTGCTAGT
65 GATACACTATGTGCTAGT
* * ** * * **
21928587 ATATTTATTTCTGTTTATTCGATGATATACTATGTGCTAGTATATTTACTTTGGTTTATCCGATG
1 ATATTTATTTCGGTGTAACCGATGATATACTATGTGCCAATATATTTACTTCAGTTTATCCGATG
*
21928652 ATGCACT
66 ATACACT
21928659 GAGGTGCCAG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 3 0.05
82 57 0.95
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (82 bp):
ATATTTATTTCGGTGTAACCGATGATATACTATGTGCCAATATATTTACTTCAGTTTATCCGATG
ATACACTATGTGCTAGT
Found at i:21935972 original size:22 final size:23
Alignment explanation
Indices: 21935946--21935989 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21935936 AATTGGGGTT
21935946 TGGG-TGTAGGTACAAAATGGTA
1 TGGGTTGTAGGTACAAAATGGTA
* *
21935968 TGGGTTTTTGGTACAAAATGGT
1 TGGGTTGTAGGTACAAAATGGT
21935990 TTTCTTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.27, C:0.05, G:0.34, T:0.34
Consensus pattern (23 bp):
TGGGTTGTAGGTACAAAATGGTA
Found at i:21941104 original size:9 final size:9
Alignment explanation
Indices: 21941090--21941142 Score: 79
Period size: 9 Copynumber: 5.9 Consensus size: 9
21941080 ATCTTATATA
21941090 AATTTGGTC
1 AATTTGGTC
21941099 AATTTGGTC
1 AATTTGGTC
21941108 AATTTGGTC
1 AATTTGGTC
** *
21941117 AATTTTATA
1 AATTTGGTC
21941126 AATTTGGTC
1 AATTTGGTC
21941135 AATTTGGT
1 AATTTGGT
21941143 TAGGCATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (9 bp):
AATTTGGTC
Found at i:21946798 original size:17 final size:17
Alignment explanation
Indices: 21946776--21946809 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21946766 AGTCTATATA
*
21946776 AGCCATAATATGGAAAT
1 AGCCATAATATGAAAAT
21946793 AGCCATAATATGAAAAT
1 AGCCATAATATGAAAAT
21946810 TGAAAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.24
Consensus pattern (17 bp):
AGCCATAATATGAAAAT
Found at i:21947324 original size:23 final size:23
Alignment explanation
Indices: 21947293--21947375 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 23
21947283 GGGGACTTCA
* *
21947293 ATTACTAGTACTTTGGTAATTTT
1 ATTACTAGTACTTCGGTAATTCT
* *
21947316 ATTATTAGTACTTCGGTACTTCT
1 ATTACTAGTACTTCGGTAATTCT
* * **
21947339 ATTACTAGCACTGCGGTGCTTCT
1 ATTACTAGTACTTCGGTAATTCT
* *
21947362 GTTACTAGAACTTC
1 ATTACTAGTACTTC
21947376 AGTATGATAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (23 bp):
ATTACTAGTACTTCGGTAATTCT
Found at i:21949009 original size:55 final size:55
Alignment explanation
Indices: 21948950--21949128 Score: 241
Period size: 56 Copynumber: 3.2 Consensus size: 55
21948940 TTATCGCCAA
* * * *
21948950 AAGGCCATTCATTCAAGAATTTTCCATAAAAGTTACTCTTTTCAAAATTCACCAC
1 AAGGCCATTCATTCAAGAATTTTCCACAAAGGCTACTCTTTTCAGAATTCACCAC
* *
21949005 AAGGCCATTCATTCAAGATTTTTCCACAAAGGCTACTTTTTTTCAGAATTCACCAC
1 AAGGCCATTCATTCAAGAATTTTCCACAAAGGCTAC-TCTTTTCAGAATTCACCAC
* * * *
21949061 AAGGCCAATCATTCAAGAGTTTGCCACAAAGGCTACTCTTTTTAGAATTCACCAC
1 AAGGCCATTCATTCAAGAATTTTCCACAAAGGCTACTCTTTTCAGAATTCACCAC
*
21949116 AAGGGCAATTCAT
1 AA-GGCCATTCAT
21949129 AAGAGTGCGC
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
55 51 0.47
56 58 0.53
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.31
Consensus pattern (55 bp):
AAGGCCATTCATTCAAGAATTTTCCACAAAGGCTACTCTTTTCAGAATTCACCAC
Found at i:21949115 original size:28 final size:28
Alignment explanation
Indices: 21949028--21949117 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
21949018 CAAGATTTTT
*
21949028 CCACAAAGGCTACTTTTTTTCAGAATTCA
1 CCACAAAGGCTACTCTTTTT-AGAATTCA
* * * ** * **
21949057 CCAC-AAGGCCAATCATTCAAGAGTTTG
1 CCACAAAGGCTACTCTTTTTAGAATTCA
21949084 CCACAAAGGCTACTCTTTTTAGAATTCA
1 CCACAAAGGCTACTCTTTTTAGAATTCA
21949112 CCACAA
1 CCACAA
21949118 GGGCAATTCA
Statistics
Matches: 43, Mismatches: 17, Indels: 3
0.68 0.27 0.05
Matches are distributed among these distances:
27 9 0.21
28 30 0.70
29 4 0.09
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CCACAAAGGCTACTCTTTTTAGAATTCA
Found at i:21949160 original size:27 final size:28
Alignment explanation
Indices: 21949130--21949182 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
21949120 GCAATTCATA
21949130 AGAGTGCGCCACGAAGGCA-TTCCTTAC
1 AGAGTGCGCCACGAAGGCATTTCCTTAC
***
21949157 AGAGTTTTCCACGAAGGCATTTCCTT
1 AGAGTGCGCCACGAAGGCATTTCCTT
21949183 TCTTAACAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (28 bp):
AGAGTGCGCCACGAAGGCATTTCCTTAC
Found at i:21951288 original size:45 final size:47
Alignment explanation
Indices: 21951237--21951325 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 47
21951227 CCCTAATAAT
* *
21951237 AACTCTTCGGAGTTACCTGTTA-AGCTC-AATAAGCTTCCTGTTTTA
1 AACTCTTAGGAGTTACCTGTTATAGCCCGAATAAGCTTCCTGTTTTA
* * *
21951282 AACTCTTATGAGTTTCCTGTTATAGCCCGGATAAGCTTCCTGTT
1 AACTCTTAGGAGTTACCTGTTATAGCCCGAATAAGCTTCCTGTT
21951326 ACATGGCTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 19 0.51
46 4 0.11
47 14 0.38
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (47 bp):
AACTCTTAGGAGTTACCTGTTATAGCCCGAATAAGCTTCCTGTTTTA
Found at i:21968479 original size:39 final size:39
Alignment explanation
Indices: 21968439--21968691 Score: 382
Period size: 39 Copynumber: 6.5 Consensus size: 39
21968429 GTTCACTTTT
* * *
21968439 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
21968478 AAGCATATATCACAATACTCATATAATTACATAACGTTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
21968517 AAGCACATATCGCAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
21968556 AAGAATATATCGCAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
21968595 AAGCATATATCACAATACTCATATAATCATATAAAATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
21968634 AAGCATATA-CTACAATTCTCATATAATCACATAACATTC
1 AAGCATATATC-ACAATACTCATATAATCACATAACATTC
21968673 AAGCATATATCACAATACT
1 AAGCATATATCACAATACT
21968692 TAAAAACATG
Statistics
Matches: 193, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 191 0.99
40 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:21984220 original size:18 final size:17
Alignment explanation
Indices: 21984188--21984221 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21984178 TATTTAATTA
*
21984188 ATTTTTTATGTTTTATG
1 ATTTTTTAGGTTTTATG
21984205 ATTTTTTAGGTGTTTAT
1 ATTTTTTAGGT-TTTAT
21984222 AAGCATAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.68
Consensus pattern (17 bp):
ATTTTTTAGGTTTTATG
Found at i:21990597 original size:47 final size:47
Alignment explanation
Indices: 21990531--21990865 Score: 544
Period size: 47 Copynumber: 7.1 Consensus size: 47
21990521 GAAATGATAG
21990531 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21990578 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21990625 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21990672 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21990719 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
21990768 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
21990815 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21990862 TAAG
1 TAAG
21990866 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 225 0.84
49 44 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:21990808 original size:141 final size:140
Alignment explanation
Indices: 21990531--21990865 Score: 526
Period size: 143 Copynumber: 2.4 Consensus size: 140
21990521 GAAATGATAG
*
21990531 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
21990596 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
21990661 TATATATGTGA
131 -ATATATGTGA
*
21990672 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
*
21990737 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
21990802 TGTATATATGTGA
129 TG-ATATATGTGA
* * * * * * * * *
21990815 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
21990866 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
141 81 0.45
143 98 0.55
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
ATATATGTGA
Found at i:21991041 original size:38 final size:37
Alignment explanation
Indices: 21990984--21991062 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
21990974 CCGAGCTCTA
* *
21990984 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
21991022 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21991059 AAGA
1 AAGA
21991063 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.41
38 21 0.57
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21994727 original size:22 final size:22
Alignment explanation
Indices: 21994699--21994741 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
21994689 TAAGATAAAA
21994699 AAAATAT-AATCACATACATATG
1 AAAATATCAATCACAT-CATATG
*
21994721 AAAATATCAATCTCATCATAT
1 AAAATATCAATCACATCATAT
21994742 CAATCATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.30
Consensus pattern (22 bp):
AAAATATCAATCACATCATATG
Found at i:21994821 original size:19 final size:19
Alignment explanation
Indices: 21994797--21994833 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21994787 GAACATGTCA
21994797 ATGCATACTTTAAAAAATG
1 ATGCATACTTTAAAAAATG
* *
21994816 ATGCATATTTTATAAAAT
1 ATGCATACTTTAAAAAAT
21994834 TTCTTAGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (19 bp):
ATGCATACTTTAAAAAATG
Found at i:21998525 original size:33 final size:33
Alignment explanation
Indices: 21998483--21998717 Score: 140
Period size: 33 Copynumber: 6.7 Consensus size: 33
21998473 CATATAAAGG
21998483 GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
* ** *
21998516 GGTTGCTAAGTGCTGGTTCCACCGTATTTTAAATGTGGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA-CCT--AT-T----GGT
21998559 GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
** *
21998592 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA-CCT--AT-T----GGT
*
21998635 GGTTGCTAAGTGCTGATT-CCC--CCGA--GG-
1 GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
* * *
21998662 GGTTGCTAAGTGCTGATTCCTCGACCCATTTGGT
1 GGTTGCTAAGTGCTGATTCCCCTACCTA-TTGGT
21998696 GGTTGCTAAGTGCTGATTCCCC
1 GGTTGCTAAGTGCTGATTCCCC
21998718 CGAGGGGTTG
Statistics
Matches: 158, Mismatches: 17, Indels: 53
0.69 0.07 0.23
Matches are distributed among these distances:
27 18 0.11
28 4 0.03
30 3 0.02
33 43 0.27
34 25 0.16
35 5 0.03
36 2 0.01
37 1 0.01
38 6 0.04
39 2 0.01
40 1 0.01
41 4 0.03
42 3 0.02
43 41 0.26
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCTACCTATTGGT
Found at i:21998566 original size:76 final size:76
Alignment explanation
Indices: 21998481--21998656 Score: 334
Period size: 76 Copynumber: 2.3 Consensus size: 76
21998471 TGCATATAAA
*
21998481 GGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGGTTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
*
21998546 AAATGTGGAAG
66 AAATGTGAAAG
21998557 GGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
21998622 AAATGTGAAAG
66 AAATGTGAAAG
21998633 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
21998657 CGAGGGGTTG
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 98 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (76 bp):
GGGGTTGCTAAGTGCTGATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
AAATGTGAAAG
Found at i:21998670 original size:27 final size:27
Alignment explanation
Indices: 21998633--21998729 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
21998623 AATGTGAAAG
21998633 GGGGTTGCTAAGTGCTGATTCCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCCGA
*
21998660 GGGGTTGCTAAGTGCTGATTCCTCGACCCA
1 GGGGTTGCTAAGTGCTGATTCC-C--CCGA
21998690 TTTGGTGGTTGCTAAGTGCTGATTCCCCCGA
1 ---GG-GGTTGCTAAGTGCTGATTCCCCCGA
21998721 GGGGTTGCT
1 GGGGTTGCT
21998730 GTGCGTTGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
27 29 0.48
28 3 0.05
30 3 0.05
31 3 0.05
33 3 0.05
34 20 0.33
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCCGA
Found at i:21998740 original size:61 final size:59
Alignment explanation
Indices: 21998635--21998767 Score: 189
Period size: 61 Copynumber: 2.2 Consensus size: 59
21998625 TGTGAAAGGG
*
21998635 GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCTCGACCCATTTGGT
1 GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCT-AGTGCTGATTCCCCGACCCA-TTGGT
**
21998696 GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCT-GTGCGTTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAGTGC--TGATTCCCCGACCCATTGGT
21998756 GG-TGCTAAGTGC
1 GGTTGCTAAGTGC
21998768 GGAATGCACC
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
59 14 0.21
60 7 0.10
61 46 0.69
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.32
Consensus pattern (59 bp):
GGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAGTGCTGATTCCCCGACCCATTGGT
Found at i:21999593 original size:38 final size:38
Alignment explanation
Indices: 21999542--21999616 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
21999532 TTTGTGATAA
21999542 AAGTTATATTTTGGTGTAATCATGTAGGAAATTTATCT
1 AAGTTATATTTTGGTGTAATCATGTAGGAAATTTATCT
*
21999580 AAGTTATATTTTGGTGTAATCATGTGGGAAATTTATC
1 AAGTTATATTTTGGTGTAATCATGTAGGAAATTTATC
21999617 CACTTGTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (38 bp):
AAGTTATATTTTGGTGTAATCATGTAGGAAATTTATCT
Found at i:22009029 original size:16 final size:16
Alignment explanation
Indices: 22009010--22009042 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22009000 TCAACTTTAA
22009010 AAAATGACAATGAAAT
1 AAAATGACAATGAAAT
22009026 AAAATGACAATGAAAT
1 AAAATGACAATGAAAT
22009042 A
1 A
22009043 GTGTTTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAATGACAATGAAAT
Found at i:22009580 original size:13 final size:13
Alignment explanation
Indices: 22009534--22009585 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
22009524 TTCTTCATTA
22009534 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* * *
22009547 CTGTGGAAAAGTA
1 CTTTTGAAAAGTG
*
22009560 CTTTTTGAGAAGTG
1 C-TTTTGAAAAGTG
22009574 CTTTTGAAAAGT
1 CTTTTGAAAAGT
22009586 TTGGTTTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
13 21 0.70
14 9 0.30
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:22011683 original size:25 final size:26
Alignment explanation
Indices: 22011648--22011696 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
22011638 TTTTCTTTTT
*
22011648 CTTTTCATTTTTAGTTTAGATTTTCC
1 CTTTTCATTTTTAGGTTAGATTTTCC
22011674 CTTTTC-TTTTTAGGTTAGATTTT
1 CTTTTCATTTTTAGGTTAGATTTT
22011697 AGTTTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.63
Consensus pattern (26 bp):
CTTTTCATTTTTAGGTTAGATTTTCC
Found at i:22016867 original size:40 final size:40
Alignment explanation
Indices: 22016823--22017084 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
22016813 GCTCCTCGTT
* *
22016823 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
22016863 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
22016903 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
22016942 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
22016981 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
22017020 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
22017061 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22017085 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:22025404 original size:25 final size:26
Alignment explanation
Indices: 22025369--22025417 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
22025359 TTTTCTTTTT
*
22025369 CTTTTCATTTTTAGTTTAGATTTTCC
1 CTTTTCATTTTTAGGTTAGATTTTCC
22025395 CTTTTC-TTTTTAGGTTAGATTTT
1 CTTTTCATTTTTAGGTTAGATTTT
22025418 AGTTTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.63
Consensus pattern (26 bp):
CTTTTCATTTTTAGGTTAGATTTTCC
Found at i:22028870 original size:39 final size:40
Alignment explanation
Indices: 22028749--22028932 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
22028739 GCTCCTCGTT
*
22028749 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* * *
22028789 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
22028829 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
22028868 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
22028909 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22028933 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 48 0.39
40 62 0.51
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:22028893 original size:79 final size:82
Alignment explanation
Indices: 22028749--22028932 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 82
22028739 GCTCCTCGTT
* *
22028749 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
22028813 GAT-TTAGTAACTCA-CA
66 GATATT-GTAACTCAGCA
* **
22028829 CAAATGCCTTTGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* *
22028890 CGGATATTGTCACTTAGCA
64 CGGATATTGTAACTCAGCA
22028909 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22028933 CAGCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
78 13 0.14
79 58 0.64
80 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTAACTCAGCA
Found at i:22039806 original size:390 final size:391
Alignment explanation
Indices: 22039068--22039830 Score: 1048
Period size: 390 Copynumber: 2.0 Consensus size: 391
22039058 ACCAAAACAT
*
22039068 GTAACATGCATGCCTAGTTACCTTTTTCCTCAGATCCATTGATGTTGGGGTGTGACACATTTATG
1 GTAACATGCATGCCTAGTTACCTTTTTCCTCAGATCCACTGATGTTGGGGTGTGACACATTTATG
* ** *
22039133 GCGAGTCAGGGGGCAGAAAGCATACAATGACCTAAAAAATCAAGTGATTTATCTGAGGGCAATGT
66 GCGAGTCAGGGGGCAGAAAGCATACAATGACCTAAAAAATCAAGTGATTCATCTGAGGAAAACGT
* *
22039198 AGCCAAGGAGGAATAGAAAGAAGACAAAGTAAGAGAGAAGGACGATGATGAGGCTACGGAAGAAG
131 AGCCAAGGAGGAATAGAAAGAAGACAAAGCAAGAGAGAAGGACGATGACGAGGCTACGGAAGAAG
* * * *
22039263 ACGACTTCAAGCCCTATCACGATTATATATAAGATGTGTTTGCGCTCGCACAACCATCCACGGGG
196 ACAACTTCAAGCCCTATCACGATGATATATAAGATATGTTCGCGCTCGCACAACCATCCACGGGG
* * * * * * * *
22039328 GCCCCTGTCATTCGTAAACTGAGCGATCAGCTCAGACTGTCTTATAAAAGGTCGATCGTCAAGGG
261 GCCCCTATCATCCGTAAACTAAGCGACCAACTCAAACTATCTTACAAAAGGTCGATCGTCAAGGG
* * * **
22039393 CAAATTCAAAGGAATAACAAGATCAAGTGAGAGTCCTGGGGATGCTCAAGGGAAAAGTTAAAATA
326 AAAAGTCAAAGAAATAACAAGATCAAGTGAGAGTCCCAGGGATGCTCAAGGGAAAAGTTAAAATA
22039458 G
391 G
* *
22039459 GTAACAT-CATGCCTAGTTACCCTTTTT-CTCGGATCCGCTGATGTTGGGGTGTGACACATTTAT
1 GTAACATGCATGCCTAGTTA-CCTTTTTCCTCAGATCCACTGATGTTGGGGTGTGACACATTTAT
* * * **
22039522 GGCGAGTCAGGGGGCAGAAAGCATACAATGGCCTGACAAATTGAGTGATTCATCTGAGGAAAACG
65 GGCGAGTCAGGGGGCAGAAAGCATACAATGACCTAAAAAATCAAGTGATTCATCTGAGGAAAACG
* * * ** * * *
22039587 TATCCTAGGAGGAATAGAAAGAATATGAAGCAGGAGAGGAGGAGGATGACGAGGCTAC-GAAGGA
130 TAGCCAAGGAGGAATAGAAAGAAGACAAAGCAAGAGAGAAGGACGATGACGAGGCTACGGAA-GA
* ** * *
22039651 TGACAACTTTGAGCCCTATCACGATGATCTATAAGATATGTTCGTGCTCGCACAACCATCCACGG
194 AGACAACTTCAAGCCCTATCACGATGATATATAAGATATGTTCGCGCTCGCACAACCATCCACGG
*
22039716 GGGCCTCC-ATCATCCGTAAACTAAGCGACCAACTCAAATTATCTTACAAAAGGTCGATCGTCAA
259 GGGCC-CCTATCATCCGTAAACTAAGCGACCAACTCAAACTATCTTACAAAAGGTCGATCGTCAA
* *
22039780 GGGAAAAGTCAAAGAAATAGCAAGATCGAGTGAGAGTCCCAGGGATGCTCA
323 GGGAAAAGTCAAAGAAATAACAAGATCAAGTGAGAGTCCCAGGGATGCTCA
22039831 GGATTAGTTA
Statistics
Matches: 322, Mismatches: 47, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
389 3 0.01
390 303 0.94
391 16 0.05
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (391 bp):
GTAACATGCATGCCTAGTTACCTTTTTCCTCAGATCCACTGATGTTGGGGTGTGACACATTTATG
GCGAGTCAGGGGGCAGAAAGCATACAATGACCTAAAAAATCAAGTGATTCATCTGAGGAAAACGT
AGCCAAGGAGGAATAGAAAGAAGACAAAGCAAGAGAGAAGGACGATGACGAGGCTACGGAAGAAG
ACAACTTCAAGCCCTATCACGATGATATATAAGATATGTTCGCGCTCGCACAACCATCCACGGGG
GCCCCTATCATCCGTAAACTAAGCGACCAACTCAAACTATCTTACAAAAGGTCGATCGTCAAGGG
AAAAGTCAAAGAAATAACAAGATCAAGTGAGAGTCCCAGGGATGCTCAAGGGAAAAGTTAAAATA
G
Found at i:22040754 original size:20 final size:20
Alignment explanation
Indices: 22040729--22040771 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
22040719 TGCACTATAT
22040729 CATGGACGTCAGGCCATGGA
1 CATGGACGTCAGGCCATGGA
22040749 CATGGACGTCAGGCCATGGA
1 CATGGACGTCAGGCCATGGA
22040769 CAT
1 CAT
22040772 TCGAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.33, T:0.16
Consensus pattern (20 bp):
CATGGACGTCAGGCCATGGA
Found at i:22047129 original size:42 final size:42
Alignment explanation
Indices: 22047085--22048126 Score: 1777
Period size: 42 Copynumber: 24.8 Consensus size: 42
22047075 CAAACAAAAA
* * * ** * *
22047085 CGCCGCTAAA-AACCATGTTCTTTAGCGGCACTTAATAATAAA
1 CGCCGCTAAAGAA-CAAGGTCTTTAGCGGCATTTTTTATTAAG
* * * * *
22047127 CGCCGCTAAAGAGCATGATCTTTAACGGC-GTTTTTATCTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTAT-TAAG
*
22047169 CGCCTCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047211 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047253 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047295 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047337 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047379 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047421 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047463 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047505 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047547 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047589 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047631 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047673 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047715 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047757 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047799 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047841 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047883 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047925 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
22047967 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
** * * * *
22048009 CGCCGCTAAAGAACTTGGACTTTAACGGCGTTTTTT-TCTAGG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTAT-TAAG
* * * * *
22048051 CACCACTAAAGAACATGGTCTTTAGCGGCGTTTTTT-CTAAG
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
* * * *
22048092 CGTCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTT
22048127 ATACAAAAAC
Statistics
Matches: 964, Mismatches: 32, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
41 39 0.04
42 917 0.95
43 8 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (42 bp):
CGCCGCTAAAGAACAAGGTCTTTAGCGGCATTTTTTATTAAG
Found at i:22048483 original size:21 final size:21
Alignment explanation
Indices: 22048444--22048514 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
22048434 TTTTGCTCTG
* **
22048444 CTCTGCTTCTCTCGTTGCAGC
1 CTCTGCTTCCCTCACTGCAGC
*
22048465 CTCTGCTTCCCTCACTGCA-A
1 CTCTGCTTCCCTCACTGCAGC
*
22048485 CTGCTGCTTCCCTCACTGCCGC
1 CT-CTGCTTCCCTCACTGCAGC
22048507 CTCTGCTT
1 CTCTGCTT
22048515 TAAGTTGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
20 2 0.05
21 38 0.90
22 2 0.05
ACGTcount: A:0.07, C:0.44, G:0.15, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCAGC
Found at i:22054003 original size:9 final size:9
Alignment explanation
Indices: 22053959--22054426 Score: 357
Period size: 9 Copynumber: 53.0 Consensus size: 9
22053949 GGTAAGTTAA
22053959 ATGTAAGTT
1 ATGTAAGTT
*
22053968 ATGTACGTGT
1 ATGTAAGT-T
*
22053978 ATAAGTTA-TT
1 AT--GTAAGTT
22053988 ATGTAAGTT
1 ATGTAAGTT
*
22053997 ATATAAGTT
1 ATGTAAGTT
*
22054006 ATATAAGTT
1 ATGTAAGTT
22054015 AAATGT-A-TT
1 --ATGTAAGTT
*
22054024 ATGTAGGTT
1 ATGTAAGTT
22054033 ATGTAAGTT
1 ATGTAAGTT
* *
22054042 GTGTAAGAT
1 ATGTAAGTT
*
22054051 ATTTAAGTT
1 ATGTAAGTT
22054060 ATGTAAGTT
1 ATGTAAGTT
*
22054069 TTGT-A-TT
1 ATGTAAGTT
22054076 ATGTAAGTT
1 ATGTAAGTT
22054085 ATGTAAGTT
1 ATGTAAGTT
22054094 ATGTAAGTT
1 ATGTAAGTT
**
22054103 AAATATA-TT
1 ATGTA-AGTT
*
22054112 ATGTAGGTT
1 ATGTAAGTT
22054121 ATGTAAGTT
1 ATGTAAGTT
* *
22054130 GTGTAAGAT
1 ATGTAAGTT
*
22054139 ATTTAAGTT
1 ATGTAAGTT
22054148 ATGTAAGTT
1 ATGTAAGTT
*
22054157 TTGT-A-TT
1 ATGTAAGTT
22054164 ATGTAAGTT
1 ATGTAAGTT
22054173 ATGTAAGTT
1 ATGTAAGTT
22054182 ATGTAAGTT
1 ATGTAAGTT
**
22054191 AAATATA-TT
1 ATGTA-AGTT
*
22054200 ATGTAGGTGTT
1 ATGTA--AGTT
*
22054211 TTGT-A-TT
1 ATGTAAGTT
22054218 ATGTAAGTT
1 ATGTAAGTT
*
22054227 ACGTAAGTT
1 ATGTAAGTT
22054236 ATGTAAGTT
1 ATGTAAGTT
22054245 AAATGT-A-TT
1 --ATGTAAGTT
*
22054254 ATGTAGGTT
1 ATGTAAGTT
22054263 ATGTAAGTT
1 ATGTAAGTT
* *
22054272 GTGTAAGAT
1 ATGTAAGTT
*
22054281 ATTTAAGTT
1 ATGTAAGTT
22054290 ATGTAAGTT
1 ATGTAAGTT
*
22054299 TTGT-A-TT
1 ATGTAAGTT
22054306 ATGTAAGTT
1 ATGTAAGTT
22054315 ATGTAAGTT
1 ATGTAAGTT
22054324 ATGTAAGTT
1 ATGTAAGTT
**
22054333 AAATATA-TT
1 ATGTA-AGTT
*
22054342 ATGTAGGTT
1 ATGTAAGTT
22054351 ATGTAAGTT
1 ATGTAAGTT
* *
22054360 GTGTAAGAT
1 ATGTAAGTT
*
22054369 ATTTAAGTT
1 ATGTAAGTT
22054378 ATGTAAGTT
1 ATGTAAGTT
*
22054387 TTGT-A-TT
1 ATGTAAGTT
*
22054394 ATG-CAGTT
1 ATGTAAGTT
* *
22054402 ATGTATGCT
1 ATGTAAGTT
22054411 ATGT-A-TT
1 ATGTAAGTT
22054418 ATGTAAGTT
1 ATGTAAGTT
22054427 GTCTAAGATA
Statistics
Matches: 357, Mismatches: 70, Indels: 64
0.73 0.14 0.13
Matches are distributed among these distances:
7 38 0.11
8 17 0.05
9 276 0.77
10 11 0.03
11 13 0.04
12 2 0.01
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:22054115 original size:88 final size:87
Alignment explanation
Indices: 22053959--22054366 Score: 462
Period size: 88 Copynumber: 4.6 Consensus size: 87
22053949 GGTAAGTTAA
* * * * *
22053959 ATGTAAGTTATGTACGTGTATAAGTTATTATGTAAGTTATATAAGTTATATAAGTTAAATGTATT
1 ATGTAAGTTATGTAAGT-TA-ATG-TATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATT
*
22054024 ATGTAGGTTATGTAAGTTGTGTAAGAT
63 ATGTAGGTTATGT-A-TTATGTAAGAT
* *
22054051 ATTTAAGTTATGTAAGTT-TTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATG
1 ATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATG
*
22054115 TAGGTTATGTAAGTTGTGTAAGAT
66 TAGGTTATGT-A-TTATGTAAGAT
* *
22054139 ATTTAAGTTATGTAAGTT-TTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATG
1 ATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATG
* *
22054203 TAGGTGTTTTGTATTATGTAAGTT
66 TA-G-GTTATGTATTATGTAAGAT
* * * * **
22054227 ACGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTA-AGTTA
1 ATGTAAGTTATGTAAGTT-AATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATA-TTA
* * *
22054291 TGTAAGTTTTGTATTATGTAAGTT
64 TGTAGGTTATGTATTATGTAAGAT
* * *
22054315 ATGTAAGTTATGTAAGTTAAATATATTATGTAGGTTATGTAAGTTGTGTAAG
1 ATGTAAGTTATGTAAGTT-AATGTATTATGTAAGTTATGTAAGTTATGTAAG
22054367 ATATTTAAGT
Statistics
Matches: 290, Mismatches: 21, Indels: 14
0.89 0.06 0.04
Matches are distributed among these distances:
88 224 0.77
89 4 0.01
90 46 0.16
91 1 0.00
92 15 0.05
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (87 bp):
ATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATG
TAGGTTATGTATTATGTAAGAT
Found at i:22054223 original size:142 final size:140
Alignment explanation
Indices: 22053989--22054386 Score: 582
Period size: 142 Copynumber: 2.8 Consensus size: 140
22053979 TAAGTTATTA
* * * * * * * **
22053989 TGTAAGTTATATAAGTTATATAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATT
1 TGTAAGATATTTAAGTTATGTAAGTT--TTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAA
*
22054054 TA-AGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATGTAG
64 TATA-TTATGTAGGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATGTAG
22054118 GTTATGTAAGTTG
128 GTTATGTAAGTTG
22054131 TGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATA
1 TGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATA
* *
22054196 TATTATGTAGGTGTTTTGTATTATGTAAGTTACGTAAGTTATGTAAGTTAAATGTATTATGTAGG
66 TATTATGTA-G-GTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATGTAGG
22054261 TTATGTAAGTTG
129 TTATGTAAGTTG
22054273 TGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATA
1 TGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATA
* * * *
22054338 TATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTT
66 TATTATGTAGGTTTTGT-A-TTATGTAAGTTATGTAAGTTATGTAAGTT
22054387 TTGTATTATG
Statistics
Matches: 234, Mismatches: 17, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
140 46 0.20
141 3 0.01
142 185 0.79
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (140 bp):
TGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATA
TATTATGTAGGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTATGTAGGTT
ATGTAAGTTG
Found at i:22054367 original size:88 final size:86
Alignment explanation
Indices: 22053950--22054422 Score: 452
Period size: 88 Copynumber: 5.3 Consensus size: 86
22053940 AATTACAAGG
* * * *
22053950 GTAAGTTAAATGTAAGTTATGTACGTGTATAAGTTATTATGTAAGTTATATAAGTTATATAAGTT
1 GTAAGTT--ATGTAAGTTATGTAAGT-TAT--G-TATTATGTAAGTTATGTAAGTTATGTAAGAT
* * * *
22054015 AAATGTATTATGTAGGTTATGTAAGTTGT
60 AAATATATTATGTAAGTTTTGT-A-TTAT
* * * *
22054044 GTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTAAGATAAATAT
* * *
22054109 ATTATGTAGGTTATGTAAGTTGT
66 ATTATGTAAGTTTTGT-A-TTAT
* * * *
22054132 GTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTAAGATAAATAT
*
22054197 ATTATGTAGGTGTTTTGTATTAT
66 ATTATGTA--AGTTTTGTATTAT
* * * **
22054220 GTAAGTTACGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTT
1 GTAAGTTATGTAAGTTATGTAAGTT--ATGTATTATGTAAGTTATGTAAGTTATGTAAGATAAAT
22054285 A-AGTTATGTAAGTTTTGTATTAT
64 ATA-TTATGTAAGTTTTGTATTAT
* * * **
22054308 GTAAGTTATGTAAGTTATGTAAGTTAAATATATTATGTAGGTTATGTAAGTTGTGTAAGATATTT
1 GTAAGTTATGTAAGTTATGTAAGTT--ATGTATTATGTAAGTTATGTAAGTTATGTAAGATAAAT
22054373 A-AGTTATGTAAGTTTTGTATTAT
64 ATA-TTATGTAAGTTTTGTATTAT
* * *
22054396 G-CAGTTATGTATGCTATGT-A-TTATGTA
1 GTAAGTTATGTAAGTTATGTAAGTTATGTA
22054423 AGTTGTCTAA
Statistics
Matches: 348, Mismatches: 26, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
83 4 0.01
85 2 0.01
86 1 0.00
87 15 0.04
88 254 0.73
89 3 0.01
90 46 0.13
91 2 0.01
92 15 0.04
94 6 0.02
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.46
Consensus pattern (86 bp):
GTAAGTTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTAAGATAAATAT
ATTATGTAAGTTTTGTATTAT
Found at i:22054387 original size:230 final size:229
Alignment explanation
Indices: 22053984--22054415 Score: 801
Period size: 230 Copynumber: 1.9 Consensus size: 229
22053974 GTGTATAAGT
*
22053984 TATTATGTAAGTTATATAAGTTATATAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAG
1 TATTATGTAAGTTACATAAGTTATATAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAG
22054049 ATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTAT
66 ATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTAT
22054114 GTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAA
131 GTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATG-AAGTTATGTAA
*
22054179 GTTATGTAAGTTAAATATATTATGTAGGTGTTTTG
195 GCTATGTAAGTTAAATATATTATGTAGGTGTTTTG
* *
22054214 TATTATGTAAGTTACGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAG
1 TATTATGTAAGTTACATAAGTTATATAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAG
22054279 ATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTAT
66 ATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTAT
* *
22054344 GTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGCAGTTATGTATG
131 GTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGAAGTTATGTAAG
22054409 CTATGTA
196 CTATGTA
22054416 TTATGTAAGT
Statistics
Matches: 196, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
229 16 0.08
230 180 0.92
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (229 bp):
TATTATGTAAGTTACATAAGTTATATAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAG
ATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATATATTAT
GTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGAAGTTATGTAAG
CTATGTAAGTTAAATATATTATGTAGGTGTTTTG
Found at i:22054401 original size:24 final size:24
Alignment explanation
Indices: 22054374--22054420 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22054364 AAGATATTTA
* *
22054374 AGTTATGTAAGTTTTGTATTATGC
1 AGTTATGTAAGCTATGTATTATGC
*
22054398 AGTTATGTATGCTATGTATTATG
1 AGTTATGTAAGCTATGTATTATG
22054421 TAAGTTGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (24 bp):
AGTTATGTAAGCTATGTATTATGC
Found at i:22055417 original size:3 final size:3
Alignment explanation
Indices: 22055409--22055434 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22055399 ATATGTAGTG
22055409 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
22055435 TTAACAATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22057557 original size:17 final size:20
Alignment explanation
Indices: 22057536--22057577 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
22057526 TATAATTCAA
22057536 AAATAATAAA-A-ATTATAT
1 AAATAATAAACACATTATAT
22057554 AATATAATAAACTACATTATAT
1 AA-ATAATAAAC-ACATTATAT
22057576 AA
1 AA
22057578 TAAACTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
18 2 0.10
19 8 0.40
21 1 0.05
22 9 0.45
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATAATAAACACATTATAT
Found at i:22057592 original size:16 final size:17
Alignment explanation
Indices: 22057555--22057629 Score: 127
Period size: 16 Copynumber: 4.5 Consensus size: 17
22057545 AAATTATATA
22057555 ATATAATAAACTACATT
1 ATATAATAAACTACATT
22057572 ATATAATAAACTACA-T
1 ATATAATAAACTACATT
*
22057588 ATATAATAAACTA-AAT
1 ATATAATAAACTACATT
22057604 ATATAATAAACTACATT
1 ATATAATAAACTACATT
22057621 ATATAATAA
1 ATATAATAA
22057630 TCTAGCGGTG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 28 0.51
17 26 0.47
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATAATAAACTACATT
Found at i:22057597 original size:33 final size:33
Alignment explanation
Indices: 22057555--22057629 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
22057545 AAATTATATA
*
22057555 ATATAATAAACTACATTATATAATAAACTACA-T
1 ATATAATAAACTA-AATATATAATAAACTACATT
22057588 ATATAATAAACTAAATATATAATAAACTACATT
1 ATATAATAAACTAAATATATAATAAACTACATT
22057621 ATATAATAA
1 ATATAATAA
22057630 TCTAGCGGTG
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
32 17 0.43
33 23 0.57
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.33
Consensus pattern (33 bp):
ATATAATAAACTAAATATATAATAAACTACATT
Found at i:22057833 original size:113 final size:113
Alignment explanation
Indices: 22057651--22057977 Score: 365
Period size: 114 Copynumber: 2.9 Consensus size: 113
22057641 TTCCACAACG
* * *
22057651 CGCCGCTAATAATATGTTTTAGCGGCGTTTTACCATAAGCGCCAC-AACTGCTAGTATACATCAA
1 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCATAAGCGCCACTAA-TGCTAATATACATCAA
22057715 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATACGT
65 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAC-T
* * * * *
22057765 -GCCGCTAATACTTTGCTTTAGCGGCGTTTT-CAAATAAGCGCCACTAATCCTAATGTACCTCAA
1 CGCCGCTAATACTATGCTTTAGCGGCGTTTTAC-CATAAGCGCCACTAATGCTAATATACATCAA
* * * ** * * * *
22057828 CACCAAA-CTCTGCGTTTTGGTTAAGAAAGATTGCTGTGCTTTTCAGTACT
65 GACCAAAGCGCTGCGTTTTGGTT-A-ATATTTTGCGGCGCTTTACAATACT
* * * * * *
22057878 CGCTGCTAATACTATACTTTAGCGGCATTTTAGCTTAAGCGCCACTAATGCTACTATACATCAAG
1 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCATAAGCGCCACTAATGCTAATATACATCAAG
*
22057943 ACCAAAGCGCAGCGTTTTGGTTAATATTTTGCGGC
66 ACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGC
22057978 ATTTTCCAAT
Statistics
Matches: 170, Mismatches: 36, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
112 15 0.09
113 65 0.38
114 77 0.45
115 13 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (113 bp):
CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCATAAGCGCCACTAATGCTAATATACATCAAG
ACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATACT
Found at i:22058020 original size:74 final size:73
Alignment explanation
Indices: 22057913--22058066 Score: 200
Period size: 73 Copynumber: 2.1 Consensus size: 73
22057903 CATTTTAGCT
* *
22057913 TAAGCGCCACTAATGCTACTATACATCAAGACCAAAGCGCAGCGTTTTGGTTAATATTTTGCGGC
1 TAAGCGCCACTAATCCTACTATACAGCAAGACCAAA-CGCAGCGTTTTGGTTAATATTTTGCGGC
* *
22057978 ATTTTCCAA
65 ACTTTACAA
* * * * * *
22057987 TAAGCGCCACTAATCCTAGTATACCGCAAGACCAAACTCTGCGTTTTGGTTCATATTTTGTGGCA
1 TAAGCGCCACTAATCCTACTATACAGCAAGACCAAACGCAGCGTTTTGGTTAATATTTTGCGGCA
22058052 CTTTACAA
66 CTTTACAA
*
22058060 TACGCGC
1 TAAGCGC
22058067 TGCTAATACT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
73 37 0.54
74 32 0.46
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (73 bp):
TAAGCGCCACTAATCCTACTATACAGCAAGACCAAACGCAGCGTTTTGGTTAATATTTTGCGGCA
CTTTACAA
Found at i:22058433 original size:186 final size:186
Alignment explanation
Indices: 22058085--22058433 Score: 531
Period size: 187 Copynumber: 1.9 Consensus size: 186
22058075 CTATGCTTTA
* *
22058085 GCGGCGTTTTCATATAAGCGCCACTAATCGTAATGTACCTCAACACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCATATAAGCGCCACTAATCCTAATATACCTCAACACCAAACTCTGCGTTTTGGTT
* *
22058150 AAGAAAGATTGCGGCGTTTTTAAGTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATA
66 AAGAAAGATTGCGGCGTTTCT-ACTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATA
*
22058215 AGCGCCACTAATGTTACTATACATTAAGACCAATGCGCACGTTTTGGTTAATATTTT
130 AGCGCCACTAATGCTACTATACATTAAGACCAATGCGCACGTTTTGGTTAATATTTT
* *
22058272 GCGGTGTTTTCCA-ATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTT-CATATAAGCGCCACTAATCCTAATATACCTCAACACCAAACTCTGCGTTTTGGT
* * * *
22058336 TAAGAAATATTGCGGCGCTTTCT-CTACTCGCCGCTAATACTATGCTTTAGCGGCGTTTTCGTAT
65 TAAGAAAGATTGCGGCG-TTTCTACTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCAT
* * *
22058400 AAGCGCCACTAATGCTAGTGTACCTTAAGACCAA
129 AAGCGCCACTAATGCTACTATACATTAAGACCAA
22058434 ACTCTGCGTT
Statistics
Matches: 146, Mismatches: 14, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
186 67 0.46
187 73 0.50
188 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (186 bp):
GCGGCGTTTTCATATAAGCGCCACTAATCCTAATATACCTCAACACCAAACTCTGCGTTTTGGTT
AAGAAAGATTGCGGCGTTTCTACTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATAA
GCGCCACTAATGCTACTATACATTAAGACCAATGCGCACGTTTTGGTTAATATTTT
Found at i:22058507 original size:300 final size:299
Alignment explanation
Indices: 22057667--22058468 Score: 1157
Period size: 300 Copynumber: 2.7 Consensus size: 299
22057657 TAATAATATG
* * *
22057667 TTTTAGCGGCGTTTTACC-ATAAGCGCCAC-AACTGCTAGTATACATCAAGACCAAAGCGCTGCG
1 TTTT-GCGGCGTTTT-CCAATAAGCGCCACTAA-TCCTAGTATACCTCAAGACCAAA-CTCTGCG
*
22057730 TTTTGGTTAATATTTTGCGGCGCTTTACAATACGT-GCCGCTAATACTTTGCTTTAGCGGCGTTT
62 TTTTGGTTAATATTTTGCGGCGCTTTACAATAC-TCGCCGCTAATACTATGCTTTAGCGGCGTTT
*
22057794 TCAAATAAGCGCCACTAATCCTAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAGAT
126 TCATATAAGCGCCACTAAT-CTAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAGAT
* * * * *
22057859 TGCTGTGCTTTTCAGTACTCGCTGCTAATACTATACTTTAGCGGCATTTTAGCTTAAGCGCCACT
190 TGCGGTGCTTTTAAGTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATAAGCGCCACT
22057924 AATGCTACTATACATCAAGACCAAAGCGCAGCGTTTTGGTTAATA
255 AATGCTACTATACATCAAGACCAAAGCGCAGCGTTTTGGTTAATA
* *
22057969 TTTTGCGGCATTTTCCAATAAGCGCCACTAATCCTAGTATACCGCAAGACCAAACTCTGCGTTTT
1 TTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAGTATACCTCAAGACCAAACTCTGCGTTTT
* * * * *
22058034 GGTTCATATTTTGTGGCACTTTACAATACGCGCTGCTAATACTATGCTTTAGCGGCGTTTTCATA
66 GGTTAATATTTTGCGGCGCTTTACAATACTCGCCGCTAATACTATGCTTTAGCGGCGTTTTCATA
22058099 TAAGCGCCACTAATCGTAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAGATTGCGG
131 TAAGCGCCACTAATC-TAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAGATTGCGG
* * *
22058164 CGTTTTTAAGTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATAAGCGCCACTAATGT
195 TGCTTTTAAGTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATAAGCGCCACTAATGC
* *
22058229 TACTATACATTAAGACCAATGCGCA-CGTTTTGGTTAATA
260 TACTATACATCAAGACCAAAGCGCAGCGTTTTGGTTAATA
* *
22058268 TTTTGCGGTGTTTTCCAATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTTT
1 TTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAGTATACCTCAAGACCAAACTCTGCGTTTT
* * ** *
22058333 GGTTAAGAAATATTGCGGCGCTTT-CTCTACTCGCCGCTAATACTATGCTTTAGCGGCGTTTTCG
66 GGTT-A-ATATTTTGCGGCGCTTTACAATACTCGCCGCTAATACTATGCTTTAGCGGCGTTTTCA
* * * * *
22058397 TATAAGCGCCACTAATGCTAGTGTACCTTAAGACCAAACTCTGCGTTTTCGTTAAG-ATGTATTG
129 TATAAGCGCCACTAAT-CTAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAG-ATTG
22058461 CGGTGCTT
192 CGGTGCTT
22058469 GGTAGTAAAC
Statistics
Matches: 449, Mismatches: 43, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
299 82 0.18
300 307 0.68
301 54 0.12
302 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (299 bp):
TTTTGCGGCGTTTTCCAATAAGCGCCACTAATCCTAGTATACCTCAAGACCAAACTCTGCGTTTT
GGTTAATATTTTGCGGCGCTTTACAATACTCGCCGCTAATACTATGCTTTAGCGGCGTTTTCATA
TAAGCGCCACTAATCTAATGTACCTCAACACCAAACTCTGCGTTTTGGTTAAGAAAGATTGCGGT
GCTTTTAAGTACTCGCCGCTAATACTATACTTTAGCGGCGTTTTAGCATAAGCGCCACTAATGCT
ACTATACATCAAGACCAAAGCGCAGCGTTTTGGTTAATA
Found at i:22059463 original size:7 final size:7
Alignment explanation
Indices: 22059451--22059479 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
22059441 CTTCATGTTT
22059451 CCATGCA
1 CCATGCA
22059458 CCATGCA
1 CCATGCA
22059465 CCATGCA
1 CCATGCA
22059472 CCATGCA
1 CCATGCA
22059479 C
1 C
22059480 ATTATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.45, G:0.14, T:0.14
Consensus pattern (7 bp):
CCATGCA
Found at i:22069107 original size:12 final size:12
Alignment explanation
Indices: 22069090--22069128 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
22069080 AGTGATGTCA
22069090 AGGCAAGCGCCT
1 AGGCAAGCGCCT
22069102 AGGCAAGCGCCT
1 AGGCAAGCGCCT
*
22069114 AGGCGAGCGCCT
1 AGGCAAGCGCCT
22069126 AGG
1 AGG
22069129 TGCTAAGGCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.23, C:0.31, G:0.38, T:0.08
Consensus pattern (12 bp):
AGGCAAGCGCCT
Found at i:22081681 original size:40 final size:40
Alignment explanation
Indices: 22081626--22081724 Score: 162
Period size: 40 Copynumber: 2.5 Consensus size: 40
22081616 AAACTGTTCA
* *
22081626 TCCACGTCAGCAAATCGCGTCCTCGTAGGCGCTATTTGTG
1 TCCACGTAAGCAAATCGCGTCCTCGTAGGCGCGATTTGTG
* *
22081666 TCCACTTAAGCAAATCGCGTCCTCGTAGGTGCGATTTGTG
1 TCCACGTAAGCAAATCGCGTCCTCGTAGGCGCGATTTGTG
22081706 TCCACGTAAGCAAATCGCG
1 TCCACGTAAGCAAATCGCG
22081725 CTGATGTGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
TCCACGTAAGCAAATCGCGTCCTCGTAGGCGCGATTTGTG
Found at i:22081740 original size:40 final size:40
Alignment explanation
Indices: 22081659--22081784 Score: 96
Period size: 40 Copynumber: 3.1 Consensus size: 40
22081649 CGTAGGCGCT
* ** *
22081659 ATTTGTGTCCACTTAAGCAAATCGCG-TCCTCGTAGG-TGCG
1 ATTTGTGTCCACGTAAGCAAATCGCGCTGAT-GT-GGACGCG
22081699 ATTTGTGTCCACGTAAGCAAATCGCGCTGATGTGGACGCG
1 ATTTGTGTCCACGTAAGCAAATCGCGCTGATGTGGACGCG
** * ** *
22081739 ATGTCCTG-ACACGTACCCTGACATCGCGCTGATGTGGACGCG
1 AT-TTGTGTCCACGTAAGC--AAATCGCGCTGATGTGGACGCG
22081781 ATTT
1 ATTT
22081785 CGCGGAAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
39 2 0.03
40 39 0.56
41 6 0.09
42 23 0.33
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTTGTGTCCACGTAAGCAAATCGCGCTGATGTGGACGCG
Found at i:22082284 original size:11 final size:11
Alignment explanation
Indices: 22082270--22082310 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
22082260 TGTTTTCTCT
22082270 CTATTTTGCTA
1 CTATTTTGCTA
*
22082281 CTATTTTACTA
1 CTATTTTGCTA
* *
22082292 TTATGTTGCTA
1 CTATTTTGCTA
22082303 CTATTTTG
1 CTATTTTG
22082311 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:22082565 original size:13 final size:13
Alignment explanation
Indices: 22082532--22082566 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
22082522 ATATATATTT
22082532 AAAAATT-ATATA
1 AAAAATTAATATA
22082544 AAAAA-TAATATA
1 AAAAATTAATATA
22082556 AAAAATTAATA
1 AAAAATTAATA
22082567 CATGCGGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.05
12 15 0.71
13 5 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAAATTAATATA
Found at i:22082767 original size:27 final size:27
Alignment explanation
Indices: 22082729--22082783 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
22082719 TCATTCAATC
*
22082729 ATTATACATTAAAACATAAAATTTAAA
1 ATTACACATTAAAACATAAAATTTAAA
* *
22082756 ATTACACATTAAAATATAAATTTTAAA
1 ATTACACATTAAAACATAAAATTTAAA
22082783 A
1 A
22082784 ATTTATAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTACACATTAAAACATAAAATTTAAA
Found at i:22084498 original size:126 final size:126
Alignment explanation
Indices: 22084191--22084905 Score: 1155
Period size: 126 Copynumber: 5.7 Consensus size: 126
22084181 ATTTTTTAAG
* *
22084191 TCGCGCCCACGTGTACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
* * * *
22084256 CTGAGCAAATAGTTTAAAA-AATGCTTCAAGCAGGATGCT-TTATGAGAAGAATTTTTGAAA
66 CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATT-TGAGAAGAATTTGTGAAA
* * *
22084316 TTGCGCCCTCGTGGACGCGCTTTTGCTACTGTTGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGAGTTGACGTT
*
22084381 TTTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
65 TCTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
22084443 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTCGAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
*
22084508 CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTAAGAAGAATTTGTGAAA
66 CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * *
22084569 TTGCGCCCTCGTGGACGCGCTTTTGCTACAATGGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
* ** *
22084634 CTGAGTAAATAGTATAAAGCAACGCTGCAAGCAGGATGATATTTGAGAAGAATTTGTGAAA
66 CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
22084695 TCGCGCCCTCGTGGACGTGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
* * *
22084760 CTGAGTAAATAGTATAAAACAACGCTGCAAGCAGGATGATATTTGAGAAGAATTTGTGAAA
66 CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * *
22084821 TCGCGCCCTCGTGGACGTGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTTGACTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
*
22084886 CTGAGCAAACAGTATAAAAT
66 CTGAGCAAATAGTATAAAAT
22084906 CGCTTCTAGT
Statistics
Matches: 552, Mismatches: 35, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
125 38 0.07
126 438 0.79
127 74 0.13
128 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (126 bp):
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGAGTTGACGTTT
CTGAGCAAATAGTATAAAATAACGCTGCAAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:22085553 original size:26 final size:22
Alignment explanation
Indices: 22085501--22085912 Score: 224
Period size: 21 Copynumber: 18.1 Consensus size: 22
22085491 TATCAAATTA
22085501 TATTTAAGTTAAGGGTTAGGGT
1 TATTTAAGTTAAGGGTTAGGGT
*
22085523 T-TTTAAGTTAAGTGTTAGGGT
1 TATTTAAGTTAAGGGTTAGGGT
* * *
22085544 T-TTTTATTTAAGGGTTACGGT
1 TATTTAAGTTAAGGGTTAGGGT
*
22085565 T-TTAAAGTTAAGGGTTTAGGGT
1 TATTTAAGTTAAGGG-TTAGGGT
* **
22085587 T-TTTAATTTAAGGGTTACAGT
1 TATTTAAGTTAAGGGTTAGGGT
* * *
22085608 T-TTAAAGTAAAGAGTTTAGGGT
1 TATTTAAGTTAAG-GGTTAGGGT
*
22085630 T-TTTAAGTTAAGGGTTATGGT
1 TATTTAAGTTAAGGGTTAGGGT
* *
22085651 T-TTAAAGTTAAGGGTTAGGAT
1 TATTTAAGTTAAGGGTTAGGGT
* * * *
22085672 T-TGTAGGTGAATGGGCTAGGGT
1 TATTTAAGTTAA-GGGTTAGGGT
22085694 T-TTTAAGTTAAGGGTTAGGGT
1 TATTTAAGTTAAGGGTTAGGGT
* *
22085715 TAGGGTTTTTAGGTTAATGGGTTAGGGG
1 TA-----TTTAAGTTAA-GGGTTAGGGT
*
22085743 T-TTTAAGTTAACGGTTAGCGTTGGGGT
1 TATTTAAGTTAA--G---G-GTTAGGGT
*
22085770 T-TTTAGGTTAAGGTGTTAGGGT
1 TATTTAAGTTAAGG-GTTAGGGT
22085792 T-TTTAAGTTAAGGGTTAGGGT
1 TATTTAAGTTAAGGGTTAGGGT
* *
22085813 TAGGGTTTTTAGGTTAATGGGTTAGGGG
1 TA-----TTTAAGTTAA-GGGTTAGGGT
*
22085841 T-TTTAAGTTAACGGTTAGCGTTGGGGT
1 TATTTAAGTTAA--G---G-GTTAGGGT
*
22085868 T-TTTAGGTTAAGGTGTTAGGGT
1 TATTTAAGTTAAGG-GTTAGGGT
22085890 T-TTTAAGTTAAGGGTTAGGGT
1 TATTTAAGTTAAGGGTTAGGGT
22085911 TA
1 TA
22085913 GGGTTTTTAG
Statistics
Matches: 306, Mismatches: 56, Indels: 56
0.73 0.13 0.13
Matches are distributed among these distances:
21 121 0.40
22 109 0.36
23 2 0.01
25 2 0.01
26 2 0.01
27 50 0.16
28 20 0.07
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (22 bp):
TATTTAAGTTAAGGGTTAGGGT
Found at i:22085692 original size:64 final size:60
Alignment explanation
Indices: 22085503--22085810 Score: 204
Period size: 64 Copynumber: 4.7 Consensus size: 60
22085493 TCAAATTATA
* * * *
22085503 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTGTTAGGGTTTTTTATTTAAGGGTTACGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTA-GG-ATTTTA-GTAAGGGTTAGGGTT
* * * *
22085566 TTAAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTA-CAGTTTTAAAGTAAAGAGTTTAGGGT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGA-TTTT--AGT-AAG-GGTTAGGGT
22085630 T
60 T
* * *
22085631 TTTAAGTTAAGGGTTATGGTTTTAAAGTTAAGGGTTAGGATTTGTAGGTGAATGGGCTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTT-TA-GT-AA-GGGTTAGGGTT
* *
22085695 TTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTAACGGTTA
1 TTTAAGTT-A-----AGGGTTAGGGTTTTTAAGTTAA-GGGTTA-GGATTTT-AG-TAA--G---
*
22085760 GCGTTGGGGTT
51 G-GTTAGGGTT
*
22085771 TTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTTAGG
1 TTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTAGG
22085811 GTTAGGGTTT
Statistics
Matches: 194, Mismatches: 25, Indels: 46
0.73 0.09 0.17
Matches are distributed among these distances:
62 4 0.02
63 14 0.07
64 70 0.36
65 24 0.12
69 2 0.01
70 28 0.14
71 28 0.14
72 8 0.04
75 2 0.01
76 14 0.07
ACGTcount: A:0.24, C:0.02, G:0.32, T:0.42
Consensus pattern (60 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTAGTAAGGGTTAGGGTT
Found at i:22085714 original size:49 final size:49
Alignment explanation
Indices: 22085661--22085960 Score: 417
Period size: 49 Copynumber: 6.1 Consensus size: 49
22085651 TTTAAAGTTA
* * * *
22085661 AGGGTTAGGATTTGTAGGTGAATGG-GCTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTAGGGTTTTTAGGTTAA-GGTGTTAGGGTTTTTAAGTTAAGGGTT
* *
22085710 AGGGTTAGGGTTTTTAGGTTAATGG-GTTAGGGGTTTTAAGTTAACGGTT
1 AGGGTTAGGGTTTTTAGGTTAA-GGTGTTAGGGTTTTTAAGTTAAGGGTT
* *
22085759 AGCGTTGGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTAGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
* *
22085808 AGGGTTAGGGTTTTTAGGTTAATGG-GTTAGGGGTTTTAAGTTAACGGTT
1 AGGGTTAGGGTTTTTAGGTTAA-GGTGTTAGGGTTTTTAAGTTAAGGGTT
* *
22085857 AGCGTTGGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTAGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
* *
22085906 AGGGTTAGGGTTTTTAGGTTAAGGTGTTATGATTTTTAAGTTAAGGGTT
1 AGGGTTAGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
*
22085955 GGGGTT
1 AGGGTT
22085961 TGCCAATTAA
Statistics
Matches: 225, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
48 4 0.02
49 219 0.97
50 2 0.01
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (49 bp):
AGGGTTAGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTT
Found at i:22085799 original size:98 final size:98
Alignment explanation
Indices: 22085688--22085954 Score: 482
Period size: 98 Copynumber: 2.7 Consensus size: 98
22085678 GTGAATGGGC
22085688 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTA
1 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTA
22085753 ACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGT
66 ACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGT
22085786 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTA
1 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTA
22085851 ACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGT
66 ACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGT
* **
22085884 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAA-GGTGTTATGATTTTTAAGTT
1 TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGG-GTTAGGGGTTTTAAGTT
*
22085948 AAGGGTT
65 AACGGTT
22085955 GGGGTTTGCC
Statistics
Matches: 164, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
97 2 0.01
98 162 0.99
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.43
Consensus pattern (98 bp):
TAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGGGTTAGGGGTTTTAAGTTA
ACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGT
Found at i:22085845 original size:147 final size:144
Alignment explanation
Indices: 22085623--22085960 Score: 461
Period size: 147 Copynumber: 2.4 Consensus size: 144
22085613 AGTAAAGAGT
* *
22085623 TTAGGGTTTTTAAGTTAAGG-GTTATGGTTTTAAAGTTAAGGGTTA-GG--ATTTGTAGGTGAAT
1 TTAGGGTTTTTAGGTTAAGGTGTTATGGTTTTTAAGTTAAGGGTTAGGGTTATTTGTAGGTGAAT
* * *
22085684 GGGCTAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTTAATGG-GTTAGGGGTTTTA
66 GGGCTAGGGGTTTTAAGTTAACGGTTAGCGTTAGGGTTTTTAGGTTAA-GGTGTTAGGGGTTTTA
22085748 AGTTAACGGTTAGCG
130 AGTTAACGGTTAGCG
* * * *
22085763 TTGGGGTTTTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTTTTTAGGTT
1 TTAGGGTTTTTAGGTTAAGGTGTTATGGTTTTTAAGTTAAGGGTTAGGGTTA---TTTGTAGGTG
* * *
22085828 AATGGGTTAGGGGTTTTAAGTTAACGGTTAGCGTTGGGGTTTTTAGGTTAAGGTGTTAGGGTTTT
63 AATGGGCTAGGGGTTTTAAGTTAACGGTTAGCGTTAGGGTTTTTAGGTTAAGGTGTTAGGGGTTT
* *
22085893 TAAGTTAAGGGTTAGGG
128 TAAGTTAACGGTTAGCG
* *
22085910 TTAGGGTTTTTAGGTTAAGGTGTTATGATTTTTAAGTTAAGGGTTGGGGTT
1 TTAGGGTTTTTAGGTTAAGGTGTTATGGTTTTTAAGTTAAGGGTTAGGGTT
22085961 TGCCAATTAA
Statistics
Matches: 172, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
140 18 0.10
141 23 0.13
142 2 0.01
144 1 0.01
146 2 0.01
147 126 0.73
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.42
Consensus pattern (144 bp):
TTAGGGTTTTTAGGTTAAGGTGTTATGGTTTTTAAGTTAAGGGTTAGGGTTATTTGTAGGTGAAT
GGGCTAGGGGTTTTAAGTTAACGGTTAGCGTTAGGGTTTTTAGGTTAAGGTGTTAGGGGTTTTAA
GTTAACGGTTAGCG
Found at i:22085953 original size:43 final size:42
Alignment explanation
Indices: 22085503--22085961 Score: 326
Period size: 49 Copynumber: 10.0 Consensus size: 42
22085493 TCAAATTATA
* *
22085503 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTGTTAGGGTTT
1 TTTAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGG-TT
* * *
22085546 TTTA-TTTAAGGGTTACGGTTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
** ** * * *
22085588 TTTAATTTAAGGGTTACAGTTTTAAAGTAAAGAGTTTAGGGTT
1 TTTAGGTTAAGGGTTAGGGTTTTTAAGTTAAG-GGTTAGGGTT
* * * *
22085631 TTTAAGTTAAGGGTTATGGTTTTAAAGTTAAGGGTTAGGATT
1 TTTAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * *
22085673 TGTAGGTGAATGGGCTAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTT
1 TTTAGGTTAA-GGGTTAGGGTTTTTAAGTT-A-----AGGGTTAGGGTT
* *
22085722 TTTAGGTTAATGGGTTAGGGGTTTTAAGTTAACGGTTAGCGTTGGGGTT
1 TTTAGGTTAA-GGGTTAGGGTTTTTAAGTTAA--G---G-GTTAGGGTT
22085771 TTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTT
1 TTTAGGTTAAGG-GTTAGGGTTTTTAAGTT-A-----AGGGTTAGGGTT
* *
22085820 TTTAGGTTAATGGGTTAGGGGTTTTAAGTTAACGGTTAGCGTTGGGGTT
1 TTTAGGTTAA-GGGTTAGGGTTTTTAAGTTAA--G---G-GTTAGGGTT
22085869 TTTAGGTTAAGGTGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTAGGGTT
1 TTTAGGTTAAGG-GTTAGGGTTTTTAAGTT-A-----AGGGTTAGGGTT
* * *
22085918 TTTAGGTTAAGGTGTTATGATTTTTAAGTTAAGGGTTGGGGTT
1 TTTAGGTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
22085961 T
1 T
22085962 GCCAATTAAA
Statistics
Matches: 345, Mismatches: 34, Indels: 74
0.76 0.08 0.16
Matches are distributed among these distances:
42 46 0.13
43 101 0.29
44 2 0.01
45 2 0.01
48 9 0.03
49 175 0.51
50 6 0.02
53 2 0.01
55 2 0.01
ACGTcount: A:0.22, C:0.02, G:0.33, T:0.43
Consensus pattern (42 bp):
TTTAGGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:22086218 original size:21 final size:21
Alignment explanation
Indices: 22086194--22086239 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22086184 TCCTTCAGCT
*
22086194 TCCGGCGGCGG-TTGTGGTTCC
1 TCCGGCGG-GGATTCTGGTTCC
*
22086215 TCCGGCGGGGATTCTGGTTCT
1 TCCGGCGGGGATTCTGGTTCC
22086236 TCCG
1 TCCG
22086240 ATAGGGCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.02, C:0.28, G:0.39, T:0.30
Consensus pattern (21 bp):
TCCGGCGGGGATTCTGGTTCC
Found at i:22086522 original size:18 final size:18
Alignment explanation
Indices: 22086496--22086538 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22086486 GACTCGGAAA
* *
22086496 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
22086514 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
22086532 AGGAAAC
1 AGGAAAC
22086539 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:22088393 original size:51 final size:51
Alignment explanation
Indices: 22088325--22088424 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
22088315 AAATATTTAA
22088325 AAATAGGGATTTAAGAGAAATCTAAG-AGGAACTTGAGAGAAAATTGAGATT
1 AAATAGGGATTTAAGAGAAAT-TAAGAAGGAACTTGAGAGAAAATTGAGATT
* * ** * *
22088376 AAATATGGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTAAGAAGGAACTTGAGAGAAAATTGAGA
22088425 GGAAATTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.45, C:0.03, G:0.27, T:0.25
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTAAGAAGGAACTTGAGAGAAAATTGAGATT
Found at i:22088398 original size:11 final size:11
Alignment explanation
Indices: 22088384--22088454 Score: 67
Period size: 11 Copynumber: 6.3 Consensus size: 11
22088374 TTAAATATGG
22088384 ATTTGAGAGAA
1 ATTTGAGAGAA
*
22088395 ATTTG-GAAGGA
1 ATTTGAG-AGAA
22088406 ATTTGAGAGCAA
1 ATTTGAGAG-AA
22088418 A-TTGAGAGGAA
1 ATTTGAGA-GAA
22088429 A-TTGAGAGAAA
1 ATTTGAGAG-AA
22088440 ATTTGAGAGAGA
1 ATTTGAGAGA-A
22088452 ATT
1 ATT
22088455 AGTTTGTGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
10 2 0.04
11 34 0.67
12 15 0.29
ACGTcount: A:0.44, C:0.01, G:0.30, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:22088409 original size:22 final size:24
Alignment explanation
Indices: 22088384--22088454 Score: 80
Period size: 22 Copynumber: 3.1 Consensus size: 24
22088374 TTAAATATGG
22088384 ATTTGAGAG-AAATTTGGA-AGGA
1 ATTTGAGAGAAAATTTGGAGAGGA
*
22088406 ATTTGAGAGCAAA-TT-GAGAGGA
1 ATTTGAGAGAAAATTTGGAGAGGA
*
22088428 AATTGAGAGAAAATTT-GAGAGAGA
1 ATTTGAGAGAAAATTTGGAGAG-GA
22088452 ATT
1 ATT
22088455 AGTTTGTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.05
22 26 0.62
23 10 0.24
24 4 0.10
ACGTcount: A:0.44, C:0.01, G:0.30, T:0.25
Consensus pattern (24 bp):
ATTTGAGAGAAAATTTGGAGAGGA
Found at i:22089968 original size:25 final size:24
Alignment explanation
Indices: 22089932--22089978 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
22089922 CACAATTAAA
*
22089932 TAATCAATATTTATTTAAATAAAAT
1 TAATCAATATTTATGT-AATAAAAT
22089957 TAAT-AATAATTTATGTAATAAA
1 TAATCAAT-ATTTATGTAATAAA
22089979 TAAATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
TAATCAATATTTATGTAATAAAAT
Found at i:22103315 original size:16 final size:16
Alignment explanation
Indices: 22103285--22103329 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
22103275 ATTGGATTGA
22103285 GAAAA-TTATTTAATT
1 GAAAATTTATTTAATT
*
22103300 GAAAATTTAATTAATT
1 GAAAATTTATTTAATT
22103316 -AAAATTTATTTAAT
1 GAAAATTTATTTAAT
22103330 AAGTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
GAAAATTTATTTAATT
Found at i:22103342 original size:18 final size:19
Alignment explanation
Indices: 22103304--22103344 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
22103294 TTAATTGAAA
*
22103304 ATTTAATTAATTAAAATTT
1 ATTTAATTAAGTAAAATTT
*
22103323 ATTTAA-TAAGTAATATTT
1 ATTTAATTAAGTAAAATTT
22103341 ATTT
1 ATTT
22103345 TGTGAAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
ATTTAATTAAGTAAAATTT
Found at i:22107222 original size:11 final size:11
Alignment explanation
Indices: 22107206--22107230 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22107196 ACAAGAGTTA
22107206 TTCTTTTAGAG
1 TTCTTTTAGAG
22107217 TTCTTTTAGAG
1 TTCTTTTAGAG
22107228 TTC
1 TTC
22107231 GTGACAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (11 bp):
TTCTTTTAGAG
Found at i:22107319 original size:27 final size:28
Alignment explanation
Indices: 22107242--22107319 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 28
22107232 TGACAAAGGC
* * *
22107242 TATTCTTTTAGAGTTCGCCA-TAGAGTT
1 TATTCTTTTAGAGTTCACCACAAAAGTT
* * *
22107269 TATTCTTTTAGAATTTACCGCAAAAG-T
1 TATTCTTTTAGAGTTCACCACAAAAGTT
*
22107296 TATTCTTTCAGAGTTCACCACAAA
1 TATTCTTTTAGAGTTCACCACAAA
22107320 GAATATTCTT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 37 0.93
28 3 0.08
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (28 bp):
TATTCTTTTAGAGTTCACCACAAAAGTT
Found at i:22114772 original size:48 final size:48
Alignment explanation
Indices: 22114699--22114973 Score: 201
Period size: 48 Copynumber: 5.6 Consensus size: 48
22114689 CAATGTCAGG
* * *
22114699 GAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATCCCCA
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCGTTGCATTCCCA
* * * * *** ***
22114747 AAAGTAAGATTCG-TCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGG
1 GAAGTAAGATTCGCT-GTTGTAGCTTCAATCTGTTCCGTTGC-AT-TCCCA
* * *
22114797 GAAGTGAGATTCGCTGTTGTAGCTTCAATATGTTCCGTTGCATTACCA
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCGTTGCATTCCCA
* * * * *** ***
22114845 GAAGTAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGG
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCGTTGC-AT-TCCCA
* * *
22114895 GAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATTGCCA
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCGTTGCATTCCCA
* * * *
22114943 AAAGTAAGATTCGCCGTTGTGGCTTCGATCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCT
22114974 TTTAAATTGC
Statistics
Matches: 164, Mismatches: 57, Indels: 12
0.70 0.24 0.05
Matches are distributed among these distances:
47 1 0.01
48 90 0.55
49 8 0.05
50 64 0.39
51 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (48 bp):
GAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCGTTGCATTCCCA
Found at i:22114822 original size:98 final size:98
Alignment explanation
Indices: 22114653--22114985 Score: 558
Period size: 98 Copynumber: 3.4 Consensus size: 98
22114643 GCCGAGGAAA
* * * * *
22114653 TAAGATTCGCCGTTGTGGCTTCGATCCTTTAAACTGCAATGTCAGGGAAGTAAGATCCGCTGTTG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
**
22114718 TAGCTTCAATCTGTTCCGCTGCATCCCCAAAAG
66 TAGCTTCAATCTGTTCCGCTGCATTACCAAAAG
*
22114751 TAAGATTCGTCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
* * *
22114816 TAGCTTCAATATGTTCCGTTGCATTACCAGAAG
66 TAGCTTCAATCTGTTCCGCTGCATTACCAAAAG
22114849 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
*
22114914 TAGCTTCAATCTGTTCCGCTGCATTGCCAAAAG
66 TAGCTTCAATCTGTTCCGCTGCATTACCAAAAG
22114947 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAA
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAA
22114986 ACTATGGTTT
Statistics
Matches: 219, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 219 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (98 bp):
TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
TAGCTTCAATCTGTTCCGCTGCATTACCAAAAG
Done.