Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 71 of 161
Found at i:22123469 original size:45 final size:48
Alignment explanation
Indices: 22123372--22123469 Score: 105
Period size: 49 Copynumber: 2.1 Consensus size: 48
22123362 TTCTGTCAAC
* **
22123372 TCTCGCTGAATCTTTTCCAACCGCTCTNTCCCGCATCTTTTCTACCATA
1 TCTCGCTGAATCTTTTCCAACCGCTCTAT-CCGCATCTGATCTACCATA
**
22123421 TCTCGCTGAATCTTTTCCAGA-CGCTCT-T-C-CATCTGATCTTGCATA
1 TCTCGCTGAATCTTTTCCA-ACCGCTCTATCCGCATCTGATCTACCATA
22123466 TCTC
1 TCTC
22123470 TTTGGAGCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
45 16 0.36
46 1 0.02
48 1 0.02
49 25 0.57
50 1 0.02
ACGTcount: A:0.16, C:0.35, G:0.10, T:0.38
Consensus pattern (48 bp):
TCTCGCTGAATCTTTTCCAACCGCTCTATCCGCATCTGATCTACCATA
Found at i:22127353 original size:20 final size:17
Alignment explanation
Indices: 22127310--22127345 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
22127300 TAATAAAAAC
22127310 AATAATAAT-AATAATGA
1 AATAAT-ATCAATAATGA
22127327 AATAATATCAATAATGA
1 AATAATATCAATAATGA
22127344 AA
1 AA
22127346 CGTAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (17 bp):
AATAATATCAATAATGA
Found at i:22127576 original size:3 final size:3
Alignment explanation
Indices: 22127570--22127601 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
22127560 CAACAACAAC
*
22127570 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22127602 AGCTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22136242 original size:63 final size:63
Alignment explanation
Indices: 22136143--22136268 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
22136133 GCTTTGGAGA
22136143 ATATTCTATTTTCCACTCCAAATGTGTCTCAAGGAGGAATTTCCTGTGGTTTTCTTTTTTTTT
1 ATATTCTATTTTCCACTCCAAATGTGTCTCAAGGAGGAATTTCCTGTGGTTTTCTTTTTTTTT
* *
22136206 ATATTCTATTTTCCACTCCAAATGTGTCTCAAGGAGGAATTTCCTTTGGTTTTTTTTTTTTTT
1 ATATTCTATTTTCCACTCCAAATGTGTCTCAAGGAGGAATTTCCTGTGGTTTTCTTTTTTTTT
22136269 TTTTTTTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (63 bp):
ATATTCTATTTTCCACTCCAAATGTGTCTCAAGGAGGAATTTCCTGTGGTTTTCTTTTTTTTT
Found at i:22136261 original size:1 final size:1
Alignment explanation
Indices: 22136255--22136279 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
22136245 TTTCCTTTGG
22136255 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
22136280 GCGCATATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22136893 original size:95 final size:96
Alignment explanation
Indices: 22136810--22137090 Score: 370
Period size: 97 Copynumber: 2.9 Consensus size: 96
22136800 GTTTGTCAAT
* * * * *
22136810 TAAATTAATTATAAATTTTTCAAAATTGGATTA-GGTTTCGTGTTTATTGTTTTTTAAG-AAAAA
1 TAAATTAATTATAAATTTTTAAAAATTAGATTAGGGTTTAGTGTTTA-GGGTTTTTAAGAAAAAA
* *
22136873 AGCAATTAAATTAGGGTTTAGGGTTACTTGAG
65 ATCAAATAAATTAGGGTTTAGGGTTACTTGAG
* * * * *
22136905 TAATTTAATTA-AATTTTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGGGTTTTTATGAAAAAA
1 TAAATTAATTATAA-ATTTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAA
*
22136969 ATTAAATAAATTAGGGTTTAGGGTTACTTGAG
65 ATCAAATAAATTAGGGTTTAGGGTTACTTGAG
*
22137001 TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGTAAAAA
1 TAAATTAATTATAAATTTTT-AAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAA
* *
22137066 CTCAAATAAATTAGGGTTTGGGGTT
65 ATCAAATAAATTAGGGTTTAGGGTT
22137091 TAGGGTTACT
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
94 2 0.01
95 34 0.21
96 59 0.37
97 64 0.40
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (96 bp):
TAAATTAATTATAAATTTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAAA
TCAAATAAATTAGGGTTTAGGGTTACTTGAG
Found at i:22138474 original size:18 final size:18
Alignment explanation
Indices: 22138448--22138491 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22138438 GATTAGAAAA
* * *
22138448 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
22138466 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
22138484 AGGATACA
1 AGGATACA
22138492 CATCTAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.27, T:0.18
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:22140307 original size:22 final size:23
Alignment explanation
Indices: 22140260--22140312 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
22140250 TTTTTACAAT
**
22140260 TTAAAAAAATTTTAAAAAATAAAA
1 TTAAAAACTTTTTAAAAAAT-AAA
*
22140284 TTTAAAACTTTTTAAAAAAT-AA
1 TTAAAAACTTTTTAAAAAATAAA
22140306 TTAAAAA
1 TTAAAAA
22140313 ATTAAAACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 8 0.32
24 17 0.68
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
TTAAAAACTTTTTAAAAAATAAA
Found at i:22160692 original size:80 final size:82
Alignment explanation
Indices: 22160572--22160739 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 82
22160562 TGAGTTCCAA
* * * * *
22160572 AATATATATATTTTAATTATATTTAAAGTTGATCTTATTTTTAAATTAAGTTTTAAATATGATTA
1 AATATATATATTTTAATTATATTCAAAGTTGATATCATTTTTAAATTAAATTTTAAATATAATTA
22160637 AGT-GAATCCTATTTGT
66 AGTGGAATCCTATTTGT
***
22160653 AATATATAT-TTTTAATTATATTCAAAG-TGAGTATCATTTTTTTGTTAAATTTTAAATATAATT
1 AATATATATATTTTAATTATATTCAAAGTTGA-TATCATTTTTAAATTAAATTTTAAATATAATT
** *
22160716 AAGTGGGGTCCTATTTTT
65 AAGTGGAATCCTATTTGT
22160734 AATATA
1 AATATA
22160740 AATACATAAC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
79 3 0.04
80 46 0.62
81 25 0.34
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (82 bp):
AATATATATATTTTAATTATATTCAAAGTTGATATCATTTTTAAATTAAATTTTAAATATAATTA
AGTGGAATCCTATTTGT
Found at i:22161250 original size:19 final size:19
Alignment explanation
Indices: 22161226--22161336 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
22161216 AATTTTTGAG
*
22161226 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
22161245 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
22161264 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22161283 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
22161302 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22161321 GATATGCAATATTAGA
1 GATATGCAATCTTAGA
22161337 ATATATGATT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 84 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22161684 original size:13 final size:13
Alignment explanation
Indices: 22161668--22161693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22161658 TAATTAAGTT
22161668 TTTTTATTTTTTA
1 TTTTTATTTTTTA
22161681 TTTTTATTTTTTA
1 TTTTTATTTTTTA
22161694 CCCTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:22166693 original size:180 final size:180
Alignment explanation
Indices: 22166391--22166743 Score: 652
Period size: 180 Copynumber: 2.0 Consensus size: 180
22166381 ATCAATGACA
* *
22166391 TGAGTGATGCTGTTACGGACTCAGAAGTTCCTTTTGAGTGGGATCTGTGTTTAGAGGGATCTCAT
1 TGAGTGATGCTGTTACGAACTCAGAAGTTCCTTTTGAGTGAGATCTGTGTTTAGAGGGATCTCAT
*
22166456 GGCTTTAAAGATGACATAGATTGTAGCCTATTTTCAGACTTGTTGAGGATGGTAGAACAGGAATG
66 GACTTTAAAGATGACATAGATTGTAGCCTATTTTCAGACTTGTTGAGGATGGTAGAACAGGAATG
*
22166521 AAATCTTACTTCATGAGGGGACAATGGAGATTGTGGCCTGAAGTTCCTTT
131 AAATCTTACTTCATAAGGGGACAATGGAGATTGTGGCCTGAAGTTCCTTT
*
22166571 TGAGTGATGTTGTTACGAACTCAGAAGTTCCTTTTGAGTGAGATCTGTGTTTAGAGGGATCTCAT
1 TGAGTGATGCTGTTACGAACTCAGAAGTTCCTTTTGAGTGAGATCTGTGTTTAGAGGGATCTCAT
22166636 GACTTTAAAGATGACATAGATTGTAGCCTATTTTCAGACTTGTTGAGGATGGTAGAACAGGAATG
66 GACTTTAAAGATGACATAGATTGTAGCCTATTTTCAGACTTGTTGAGGATGGTAGAACAGGAATG
*
22166701 AAATCTTACTTCATAAGGGGATAATGGAGATTGTGGCCTGAAG
131 AAATCTTACTTCATAAGGGGACAATGGAGATTGTGGCCTGAAG
22166744 GGAACGTGCA
Statistics
Matches: 167, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 167 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (180 bp):
TGAGTGATGCTGTTACGAACTCAGAAGTTCCTTTTGAGTGAGATCTGTGTTTAGAGGGATCTCAT
GACTTTAAAGATGACATAGATTGTAGCCTATTTTCAGACTTGTTGAGGATGGTAGAACAGGAATG
AAATCTTACTTCATAAGGGGACAATGGAGATTGTGGCCTGAAGTTCCTTT
Found at i:22167185 original size:11 final size:10
Alignment explanation
Indices: 22167169--22167193 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22167159 AGTTCAGATT
22167169 AAAAAAAAAC
1 AAAAAAAAAC
22167179 AAAAAAAAAC
1 AAAAAAAAAC
22167189 AAAAA
1 AAAAA
22167194 TGAAAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:22168608 original size:44 final size:44
Alignment explanation
Indices: 22168459--22169019 Score: 164
Period size: 44 Copynumber: 12.8 Consensus size: 44
22168449 CTGCATTGAC
* * * *
22168459 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATC-TCCCTAAGCAGT
* * ** ** * * *
22168501 AGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGC
1 AGT-GG-AGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* * * * *
22168547 AGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* *
22168591 AGTGGAGCAGATCGAAGAC-G-ATGAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACTGCA--AATCTTATC-TCCCTAAGCAGT
* ** * * * * *
22168633 AGTGGGAAGCAGATTTAAG-CCACCAAGCATTGTCTCTCTGAGCAGT
1 AGT-GG-AGCAGATTGAAGACTGCAAATC-TTATCTCCCTAAGCAGT
* * * * * * * *
22168679 AGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAACAGT
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* * * *
22168723 AGTGGAGCAGATCGAAGACAGCGAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATC-TCCCTAAGCAGT
* * ** ** * * * *
22168765 AGTAGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCTCTCAGCAGC
1 AGT-GG-AGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
** * * * ** *
22168811 AGCAGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* * * *
22168855 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATC-TCCCTAAGCAGT
* * ** ** * * *
22168897 AGTGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGC
1 AGTGG--AGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* * * * *
22168943 AGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
* *
22168987 AGTGGAGCAGATCGAAGA-TGGCGAATCTTATCT
1 AGTGGAGCAGATTGAAGACT-GCAAATCTTATCT
22169020 TTCCAAGATA
Statistics
Matches: 348, Mismatches: 141, Indels: 58
0.64 0.26 0.11
Matches are distributed among these distances:
42 18 0.05
43 25 0.07
44 274 0.79
45 20 0.06
46 11 0.03
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
AGTGGAGCAGATTGAAGACTGCAAATCTTATCTCCCTAAGCAGT
Found at i:22168697 original size:132 final size:132
Alignment explanation
Indices: 22168459--22169111 Score: 1108
Period size: 132 Copynumber: 4.9 Consensus size: 132
22168449 CTGCATTGAC
22168459 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
22168524 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
22168589 GT
131 GT
**
22168591 AGTGGAGCAGATCGAAGACGATGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * * *
22168656 CAAGCATTGTCTCTCTGAGCAGTAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAACA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
22168721 GT
131 GT
* *
22168723 AGTGGAGCAGATCGAAGACAGCGAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * *
22168788 CAAGCCTTGTCTCTCTCAGCAGCAGCAGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
22168853 GT
131 GT
*
22168855 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
22168920 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
22168985 GT
131 GT
*
22168987 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * *
22169052 TAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATGGCAAGTCTTATCTCCCT
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCT
22169112 GAAGTTGCAG
Statistics
Matches: 487, Mismatches: 34, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 487 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
GT
Found at i:22169148 original size:44 final size:44
Alignment explanation
Indices: 22169100--22169641 Score: 305
Period size: 44 Copynumber: 12.5 Consensus size: 44
22169090 AGATGGCAAG
*
22169100 TCTTATCTCCCTGAAGTTGCAGTGGAG-TGAATTAAAACCTCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAACCTCAAA
*** * * ** * * *
22169144 TCTTATCTTTTTGAAGTTGCAG-AGAGTAGA-T--CGCATCTAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
* ** *
22169184 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATA-AGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCTCAAA
* ** * * * *
22169228 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGGAGATCGCAAG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAAAACCTCAAA
* *
22169273 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-GATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCA-AA
* * * *
22169317 TCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
* * * ** * * *
22169361 TCTTATCTCTCTGAATTTGCAG-AGAGCAGA-T--CGCATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
* * *
22169401 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAA--GCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCTCAAA
* * * *** *
22169445 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAAAACCTCAAA
* *
22169490 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-GATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCA-AA
* * * * * *
22169534 TCCTATCTCCTTGAAGTTGCAGTGGGGCGGATTAAAACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
* * ** * * *
22169578 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
22169618 TCTTATCTCCCTGAAGTTGCAGTG
1 TCTTATCTCCCTGAAGTTGCAGTG
22169642 AAGTAGACTA
Statistics
Matches: 379, Mismatches: 93, Indels: 55
0.72 0.18 0.10
Matches are distributed among these distances:
40 69 0.18
41 13 0.03
42 5 0.01
43 20 0.05
44 199 0.53
45 71 0.19
46 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAA
Found at i:22169294 original size:89 final size:89
Alignment explanation
Indices: 22169184--22169700 Score: 364
Period size: 89 Copynumber: 5.9 Consensus size: 89
22169174 TCGCATCTAT
22169184 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATC-CTCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCTC-CCTGAAGTTGC
* *
22169248 AGTGGGGCAGACTGGAGATCGCAAG
65 AGTGGAGCAGACTGAAGATCGCAAG
* *** * *
22169273 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG-ATAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCA-AGTCTTATCTCCCTGAAGTTGC
* * * * * *
22169337 ATTGGAGCGGA-TTAAAACCTC-AG
65 AGTGGAGCAGACTGAAGATCGCAAG
* * * ** *
22169360 ATCTTATCTCTCTGAATTTGCAG-AGAGCAGA-TCGCAT---CTAGTCTTATCTCCCTGAAGTTG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAATAAGCAAGTCTTATCTCCCTGAAGTTG
*
22169420 CAGTGGAGCAGACT-AAG-TAAGCAAG
64 CAGTGGAGCAGACTGAAGAT-CGCAAG
* *
22169445 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGAT-GGCAAGTCTTATCTCCCTGAAGTT
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AA-ATAAGCAAGTCTTATCTCCCTGAAGTT
* * * *
22169508 GCAGTGGAGCAGATTAAAG-CCG-ATAA
63 GCAGTGGAGCAGACTGAAGATCGCA-AG
* * * * * * * *
22169534 TCCTATCTCCTTGAAGTTGCAGTGGGGCGGA-TTAA-AACCTTAGATCTTATCTCTCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGC-AAG-TCTTATCTCCCTGAAGTTG
* * *
22169597 CAG-AGAGCAGA-TCG--CAT--CTAG
64 CAGTGGAGCAGACT-GAAGATCGCAAG
* * *
22169618 TCTTATCTCCCTGAAGTTGCAGTGAAGTAGACTAAATAAGAAAGTCTTATC-CTCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCTC-CCTGAAGTTGC
22169682 AGT-GAGGCAGACTGAAGAT
65 AGTGGA-GCAGACTGAAGAT
22169701 GGCACTAATT
Statistics
Matches: 330, Mismatches: 67, Indels: 64
0.72 0.15 0.14
Matches are distributed among these distances:
83 2 0.01
84 97 0.29
85 20 0.06
86 8 0.02
87 24 0.07
88 49 0.15
89 125 0.38
90 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGACTGAAGATCGCAAG
Found at i:22169365 original size:133 final size:128
Alignment explanation
Indices: 22169187--22169607 Score: 317
Period size: 133 Copynumber: 3.2 Consensus size: 128
22169177 CATCTATTCT
22169187 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATC-CTCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCTCT-CTGAAGTTGCAG-
* * * *
22169251 GGGGCAGACTGGAGATCGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA
64 AGAGCAGA-TCG-CAT--CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA
22169316 ATCC
125 ATCC
* * * * * *
22169320 TATCTCCCTGAAGTTGCATTGGAGCGGA-TTAA-AACCTCAGATCTTATCTCTCTGAATTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGC-AAG-TCTTATCTCTCTGAAGTTGCAG
* * *
22169383 AGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AG
64 AGAGCAGATCGCATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCGATAA
*
22169445 TCT
126 TCC
* * *
22169448 TATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGAT-GGCAAGTCTTATCTCCCTGAAGTTGCA
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AA-ATAAGCAAGTCTTATCTCTCTGAAGTTGCA
* * * * * * *
22169511 GTGGAGCAGATTAAAGCCGAT-AA-TCCTATCTCCTTGAAGTTGCAGTGGGGCGGATTAAAACC-
63 G-AGAGCAGA-T--CG-C-ATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG
* *
22169573 TTAGATCT
122 ATA-ATCC
* *
22169581 TATCTCTCTGAAGTTGCAG-AGAGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
22169608 TCGCATCTAG
Statistics
Matches: 230, Mismatches: 37, Indels: 43
0.74 0.12 0.14
Matches are distributed among these distances:
127 1 0.00
128 60 0.26
129 24 0.10
130 15 0.07
131 12 0.05
132 20 0.09
133 91 0.40
134 5 0.02
135 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCGCATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCC
Found at i:22169694 original size:44 final size:43
Alignment explanation
Indices: 22169184--22169694 Score: 304
Period size: 44 Copynumber: 11.7 Consensus size: 43
22169174 TCGCATCTAT
*
22169184 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGG-GCAGACTAAATACGCAAG
*
22169228 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGGAGAT-CGCAAG
1 TCTTATCTC-CCTGAAGTTGCAGT-GGGCAGACT--AAATACGCAAG
* ** *
22169273 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGG-GCAGACTAAATACGCA-AG
* * * * *
22169317 TCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAA-AC-CTCAG
1 TCTTATCTCCCTGAAGTTGCAGTGG-GCAGACTAAATACGC-AAG
* * * * ** *
22169360 ATCTTATCTCTCTGAATTTGCAGAGAGCAGA-TCGCAT---CTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGGCAGACT-AAATACGCAAG
* *
22169401 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGG-GCAGACTAAATACGCAAG
*
22169445 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGAT-GGCAAG
1 TCTTATCTC-CCTGAAGTTGCAGT-GGGCAGACT-AA-ATACGCAAG
* ** *
22169490 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGG-GCAGACTAAATACGCA-AG
* * * * *
22169534 TCCTATCTCCTTGAAGTTGCAGTGGGGCGGATTAAA-AC-CTTAG
1 TCTTATCTCCCTGAAGTTGCAGT-GGGCAGACTAAATACGC-AAG
* * * ** *
22169577 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGA-TCGCAT---CTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGGCAGACT-AAATACGCAAG
* * * *
22169618 TCTTATCTCCCTGAAGTTGCAGTGAAGTAGACTAAATAAGAAAG
1 TCTTATCTCCCTGAAGTTGCAGTG-GGCAGACTAAATACGCAAG
22169662 TCTTATC-CTCCTGAAGTTGCAGTGAGGCAGACT
1 TCTTATCTC-CCTGAAGTTGCAGTG-GGCAGACT
22169695 GAAGATGGCA
Statistics
Matches: 370, Mismatches: 59, Indels: 76
0.73 0.12 0.15
Matches are distributed among these distances:
40 43 0.12
41 18 0.05
42 6 0.02
43 23 0.06
44 202 0.55
45 72 0.19
46 6 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGGCAGACTAAATACGCAAG
Found at i:22169701 original size:217 final size:217
Alignment explanation
Indices: 22169103--22169704 Score: 1033
Period size: 217 Copynumber: 2.8 Consensus size: 217
22169093 TGGCAAGTCT
* * * * *
22169103 TATCTCCCTGAAGTTGCAGTGGAGTGAATTAAAACCTCAAATCTTATCTTTTTGAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAG
* *
22169168 AGTAGATCGCATCTATTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTA
66 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTA
* *
22169233 TCCTCCTGAAGTTGCAGTGGGGCAGACTGGAGATCGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
131 TCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
22169298 AGCAGATTAAAGCCGATAATCC
196 AGCAGATTAAAGCCGATAATCC
* *
22169320 TATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAATTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAG
*
22169385 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
66 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTA
22169450 TCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
131 TCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
22169515 AGCAGATTAAAGCCGATAATCC
196 AGCAGATTAAAGCCGATAATCC
* * *
22169537 TATCTCCTTGAAGTTGCAGTGGGGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAG
* * *
22169602 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGTAGACTAAATAAGAAAGTCTTA
66 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTA
*
22169667 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
131 TCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA
22169705 CTAATTCCTA
Statistics
Matches: 363, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 363 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (217 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTA
TCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
AGCAGATTAAAGCCGATAATCC
Found at i:22170543 original size:22 final size:24
Alignment explanation
Indices: 22170516--22170559 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
22170506 TTTTTATACT
22170516 TTAATTAAGTAT-TTT-ATTAACC
1 TTAATTAAGTATGTTTAATTAACC
*
22170538 TTAATTAATTATGTTTAATTAA
1 TTAATTAAGTATGTTTAATTAA
22170560 ACTAAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 3 0.16
24 5 0.26
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (24 bp):
TTAATTAAGTATGTTTAATTAACC
Found at i:22170575 original size:19 final size:19
Alignment explanation
Indices: 22170551--22170588 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22170541 ATTAATTATG
22170551 TTTAATTAAACT-AAACATA
1 TTTAATT-AACTAAAACATA
22170570 TTTAATTAACTAAAACATA
1 TTTAATTAACTAAAACATA
22170589 ACTAGCCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTAATTAACTAAAACATA
Found at i:22171865 original size:20 final size:20
Alignment explanation
Indices: 22171815--22171865 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
22171805 GAATAAATTT
22171815 ATTGATCACTCAAAAAGTTG
1 ATTGATCACTCAAAAAGTTG
** * *
22171835 A-CCACCTACTCAAGAAGTTG
1 ATTGATC-ACTCAAAAAGTTG
22171855 ATTGATCACTC
1 ATTGATCACTC
22171866 GTTGGTGTGG
Statistics
Matches: 22, Mismatches: 7, Indels: 4
0.67 0.21 0.12
Matches are distributed among these distances:
19 2 0.09
20 18 0.82
21 2 0.09
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (20 bp):
ATTGATCACTCAAAAAGTTG
Found at i:22172567 original size:20 final size:20
Alignment explanation
Indices: 22172526--22172569 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
22172516 TATTTATTTG
*
22172526 TTTTATAGTATTTTATGTAT
1 TTTTATAGTATTTTATGAAT
*
22172546 TTTTATA-TATTTGTTTGAAT
1 TTTTATAGTATTT-TATGAAT
22172566 TTTT
1 TTTT
22172570 TAGAATTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (20 bp):
TTTTATAGTATTTTATGAAT
Found at i:22176823 original size:39 final size:39
Alignment explanation
Indices: 22176744--22176831 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
22176734 AAAAATTATA
* * * *
22176744 TTTAATACAATAAAACTTTTATTATATTTATTTGTGTTT
1 TTTAATATAATAAAACTTTTATTACATTTATTGGTATTT
22176783 TTTAATATAATAAAA-TATTTATTACATTTA-TGGTAATTT
1 TTTAATATAATAAAACT-TTTATTACATTTATTGGT-ATTT
22176822 TTTAATATAA
1 TTTAATATAA
22176832 ATTGTAACAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
38 4 0.09
39 39 0.91
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (39 bp):
TTTAATATAATAAAACTTTTATTACATTTATTGGTATTT
Found at i:22183178 original size:29 final size:28
Alignment explanation
Indices: 22183137--22183195 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 28
22183127 TTTTAAATTC
22183137 TTATATTTGGAATTTAATGATTATATTT
1 TTATATTTGGAATTTAATGATTATATTT
* * * *
22183165 TTATTTTTAGGAATTTAGTTATTTTATTT
1 TTATATTT-GGAATTTAATGATTATATTT
22183194 TT
1 TT
22183196 TGGATCTAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (28 bp):
TTATATTTGGAATTTAATGATTATATTT
Found at i:22183205 original size:22 final size:23
Alignment explanation
Indices: 22183163--22183209 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
22183153 ATGATTATAT
*
22183163 TTTTATTTTTAGGAATTTAGTTA
1 TTTTATTTTTAGGAATCTAGTTA
*
22183186 TTTTATTTTTTGG-ATCTAGTTA
1 TTTTATTTTTAGGAATCTAGTTA
22183208 TT
1 TT
22183210 AACACCGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.21, C:0.02, G:0.13, T:0.64
Consensus pattern (23 bp):
TTTTATTTTTAGGAATCTAGTTA
Found at i:22187521 original size:34 final size:34
Alignment explanation
Indices: 22187473--22187596 Score: 124
Period size: 34 Copynumber: 3.6 Consensus size: 34
22187463 TTTTGATCTG
* * *
22187473 ATATAACATTCTGATATGATATATATTTATGAAA
1 ATATGACATTCTGATATGATATATGTTTATGGAA
* * *
22187507 ATATGACACTCTGATCT-AGTTTATGTTTATGGAA
1 ATATGACATTCTGATATGA-TATATGTTTATGGAA
* * * *
22187541 ATATGACATTCTGGTTTGATATATGTTTTTGGTA
1 ATATGACATTCTGATATGATATATGTTTATGGAA
* *
22187575 ATGTGATATTCTGATATGATAT
1 ATATGACATTCTGATATGATAT
22187597 TCGTATATGT
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
33 1 0.01
34 70 0.97
35 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.44
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTATGGAA
Found at i:22190105 original size:26 final size:26
Alignment explanation
Indices: 22190069--22190120 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22190059 CTGAGGAGAG
22190069 AATGAATTTTTTATTAAGAGTGTATT
1 AATGAATTTTTTATTAAGAGTGTATT
22190095 AATGAATTTTTTATTAAGAGTGTATT
1 AATGAATTTTTTATTAAGAGTGTATT
22190121 GCAATCGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (26 bp):
AATGAATTTTTTATTAAGAGTGTATT
Found at i:22197241 original size:13 final size:13
Alignment explanation
Indices: 22197223--22197248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22197213 TTCTCTATTC
22197223 TTTACATCACTTT
1 TTTACATCACTTT
22197236 TTTACATCACTTT
1 TTTACATCACTTT
22197249 ACATCACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTACATCACTTT
Found at i:22213094 original size:24 final size:23
Alignment explanation
Indices: 22213066--22213123 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
22213056 TCTTTTCTTT
* *
22213066 ATTTTCTTTTCATTTTTAGATTAG
1 ATTTTCTTTTC-TTTCTAGAATAG
*
22213090 GTTTTCTCTTTCTTTCTAGAATAG
1 ATTTTCT-TTTCTTTCTAGAATAG
*
22213114 ATTTTGTTTT
1 ATTTTCTTTT
22213124 TTTTTGTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 3 0.11
24 21 0.75
25 4 0.14
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.62
Consensus pattern (23 bp):
ATTTTCTTTTCTTTCTAGAATAG
Found at i:22214121 original size:30 final size:31
Alignment explanation
Indices: 22214087--22214146 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
22214077 TCAAAATAAC
* *
22214087 TTTTT-ACTTTGAAAATTTTTTCAAAAAATA
1 TTTTTCACTTGGAAAATGTTTTCAAAAAATA
* *
22214117 TTTTTCAGTTGGTAAATGTTTTCAAAAAAT
1 TTTTTCACTTGGAAAATGTTTTCAAAAAAT
22214147 CTAAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (31 bp):
TTTTTCACTTGGAAAATGTTTTCAAAAAATA
Found at i:22218988 original size:5 final size:5
Alignment explanation
Indices: 22218978--22219003 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22218968 TGAGTTTAGG
22218978 GAGAA GAGAA GAGAA GAGAA GAGAA G
1 GAGAA GAGAA GAGAA GAGAA GAGAA G
22219004 CAGGTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GAGAA
Found at i:22219208 original size:26 final size:25
Alignment explanation
Indices: 22219179--22219227 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
22219169 GTACATTATT
* *
22219179 ATTTTTAATTATTATTTATTTGTTTG
1 ATTTGTAATCATTA-TTATTTGTTTG
*
22219205 ATTTGTAATCCTTATTATTTGTT
1 ATTTGTAATCATTATTATTTGTT
22219228 ATATTTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.65
Consensus pattern (25 bp):
ATTTGTAATCATTATTATTTGTTTG
Found at i:22229091 original size:31 final size:31
Alignment explanation
Indices: 22229053--22229114 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
22229043 CCCAATTTCC
22229053 TACTCCACTACCTTAGCTTTCTAAAACTAAG
1 TACTCCACTACCTTAGCTTTCTAAAACTAAG
22229084 TACTCCACTACCTTAGCTTTCTAAAACTAAG
1 TACTCCACTACCTTAGCTTTCTAAAACTAAG
22229115 GATTTTCCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (31 bp):
TACTCCACTACCTTAGCTTTCTAAAACTAAG
Found at i:22229757 original size:16 final size:18
Alignment explanation
Indices: 22229726--22229758 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
22229716 AATACAAAAG
22229726 TGGTATCGATATAAAATA
1 TGGTATCGATATAAAATA
22229744 TGGTATC-A-ATAAAAT
1 TGGTATCGATATAAAAT
22229759 TCAATAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (18 bp):
TGGTATCGATATAAAATA
Found at i:22232168 original size:21 final size:21
Alignment explanation
Indices: 22232142--22232195 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
22232132 TTAAAACCTG
22232142 ATGAGTATCGATACTTTTT-AA
1 ATGAGTATCGATA-TTTTTCAA
22232163 ATGAGTATCGATATTTTTCAA
1 ATGAGTATCGATATTTTTCAA
*
22232184 A-AAGTATCGATA
1 ATGAGTATCGATA
22232196 AAATAGTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (21 bp):
ATGAGTATCGATATTTTTCAA
Found at i:22232189 original size:20 final size:21
Alignment explanation
Indices: 22232145--22232195 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
22232135 AAACCTGATG
*
22232145 AGTATCGATACTTTTTAAATG
1 AGTATCGATACTTTTTAAATA
22232166 AGTATCGATA-TTTTTCAAA-A
1 AGTATCGATACTTTTT-AAATA
22232186 AGTATCGATA
1 AGTATCGATA
22232196 AAATAGTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (21 bp):
AGTATCGATACTTTTTAAATA
Found at i:22232739 original size:13 final size:13
Alignment explanation
Indices: 22232721--22232747 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22232711 TGATTCGAAG
22232721 TGTTAATAAATTC
1 TGTTAATAAATTC
22232734 TGTTAATAAATTC
1 TGTTAATAAATTC
22232747 T
1 T
22232748 AGAACTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TGTTAATAAATTC
Found at i:22238149 original size:32 final size:37
Alignment explanation
Indices: 22238101--22238169 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 37
22238091 AGTTCTAACT
22238101 TAAATAACAACAGAATTTA-AGA-C-ATAC-ATTTCA
1 TAAATAACAACAGAATTTATAGATCAATACAATTTCA
*
22238134 TAAATAA-AGCAGAATTTATAGATCAATACAATTTCA
1 TAAATAACAACAGAATTTATAGATCAATACAATTTCA
22238170 CAGATAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 10 0.32
33 10 0.32
34 1 0.03
35 4 0.13
36 6 0.19
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (37 bp):
TAAATAACAACAGAATTTATAGATCAATACAATTTCA
Found at i:22240648 original size:219 final size:219
Alignment explanation
Indices: 22240269--22251893 Score: 20556
Period size: 219 Copynumber: 53.4 Consensus size: 219
22240259 ATGAAAAACA
22240269 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22240334 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22240399 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22240464 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22240488 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22240553 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22240618 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22240683 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22240707 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22240772 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22240837 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22240902 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22240926 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22240991 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241056 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22241121 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22241145 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22241210 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241275 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22241340 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22241353 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22241417 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241482 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22241547 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22241571 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22241636 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241701 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22241766 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22241790 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22241855 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241920 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22241985 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22242009 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242074 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22242139 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22242204 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22242228 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242293 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22242358 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22242423 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22242447 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242512 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22242577 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22242642 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22242655 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242719 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22242784 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22242849 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22242873 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242938 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243003 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243068 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22243092 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22243157 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243222 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243287 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22243311 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22243376 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243441 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243506 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22243530 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22243595 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243660 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243725 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22243749 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22243814 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243879 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243944 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22243957 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244021 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244086 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22244151 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22244175 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244240 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244305 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22244370 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22244394 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244459 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244524 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22244589 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22244613 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244678 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244743 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22244808 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22244832 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244897 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244962 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245027 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22245051 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245116 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22245181 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245246 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22245259 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245323 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22245388 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245453 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22245477 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245542 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22245607 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245672 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22245696 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245761 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22245826 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245891 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22245915 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245980 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246045 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22246110 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22246134 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22246199 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246264 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22246329 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22246353 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22246418 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246483 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22246548 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22246561 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22246625 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246690 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22246755 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22246779 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22246844 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246909 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22246974 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22246998 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247063 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247128 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22247193 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22247217 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247282 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247347 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22247412 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22247436 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247501 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247566 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22247631 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22247655 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247720 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247785 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22247850 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22247863 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247927 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247992 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248057 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22248081 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22248146 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22248211 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248276 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22248300 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22248365 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22248430 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248495 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22248519 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22248584 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22248649 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248714 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22248738 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22248803 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22248868 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248933 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22248957 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249022 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249087 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22249152 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22249165 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249229 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249294 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22249359 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22249383 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249448 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249513 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22249578 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22249602 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249667 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249732 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22249797 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22249821 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249886 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249951 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22250016 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22250040 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22250105 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22250170 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22250235 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
22250259 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22250324 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22250389 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22250454 AATCCTATCTC-C--------C--
196 AATCCTATCTCTCTGAAGTTACAG
*
22250467 T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22250531 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22250596 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22250661 AATCCTATCTCTCTGAAGTTACAG
196 AATCCTATCTCTCTGAAGTTACAG
* *
22250685 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATT
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGAT--C-GC--A-T
* *
22250750 GAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCT
60 -----CAG-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCT
* *
22250815 CCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTA
118 CCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTA
** * * * * *
22250880 GACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAG
183 GATTGAAGCTA-GT-A-ATCCTATCTCTCTGAAGTTACAG
* * *** * ** * *
22250919 TGGAGCAGATT-GAAGCCAGAGATCTTATCTCCCTG-AGATTACAGGGGAGTAGACCGAAGAATT
1 TGGAGCGGATTAAAATAAAG-GATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATC---GCA--
* * * * ** * *
22250982 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTG
59 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTG
* * * ** * * * * * *
22251044 AGATTACAGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGA
123 AGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCTCTGAGATTACAGCGGAGTAGA
* * *
22251108 TTGAAGCCAG-AGATCTTATCTCCCTG-AGATTACAG
185 TTGAAGCTAGTA-ATCCTATCTCTCTGAAG-TTACAG
* ** ** ** * * ** * * * *
22251143 GGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA
1 TGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA-TCA
* *
22251207 GAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
62 G-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * **
22251272 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAA
125 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAA
* * * * *
22251337 G-AATTTCAGATCTTATCTCCCTGAGGTTACAG
190 GCTA-GT-A-ATCCTATCTCTCTGAAGTTACAG
* * *** * ** * *
22251369 TGGAGCAGATT-GAAGCCAGAGATCTTATCTCCCTG-AGATTACAGGGGAGTAGACCGAAGAATT
1 TGGAGCGGATTAAAATAAAG-GATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATC---GCA--
* * * * ** * *
22251432 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTG
59 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTG
* * * ** * * * * * *
22251494 AGATTACAGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGA
123 AGGTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCTCTGAGATTACAGCGGAGTAGA
* * *
22251558 TTGAAGCCAG-AGATCTTATCTCCCTG-AGATTACAG
185 TTGAAGCTAGTA-ATCCTATCTCTCTGAAG-TTACAG
* ** ** ** * * * * * * *
22251593 GGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGAGGTTACAGTACA-TCAGATTGAAGCC
1 TGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGT-AGATCGCA-TC
* * * ** *
22251656 AGAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAGATCTTATCTCCCTGA
61 AG-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* * ** *
22251721 GATTACAATGGAGCAGATTGAAGATAGTA-ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTG
124 GGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTG
*
22251785 AAGATAGTAATCCTATCTGC-CTG-AGATTACAG
188 AAGCTAGTAATCCTATCT-CTCTGAAG-TTACAG
* * * * * **
22251817 TGGAGTGGATTAAAATAAAGGATCTTATCTTTTTGAAGTTACAGTAGAGGAGATCGTGTCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
*
22251882 TTATCCCCCTGA
66 TTATCACCCTGA
22251894 TGTTGCAGTG
Statistics
Matches: 11048, Mismatches: 190, Indels: 336
0.95 0.02 0.03
Matches are distributed among these distances:
207 1624 0.15
208 16 0.00
210 8 0.00
216 8 0.00
218 16 0.00
219 8479 0.77
220 1 0.00
221 6 0.00
222 39 0.00
223 18 0.00
224 320 0.03
225 5 0.00
226 286 0.03
227 16 0.00
228 10 0.00
230 3 0.00
231 2 0.00
232 124 0.01
233 9 0.00
234 58 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (219 bp):
TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
AATCCTATCTCTCTGAAGTTACAG
Found at i:22241949 original size:864 final size:868
Alignment explanation
Indices: 22240269--22251893 Score: 20092
Period size: 864 Copynumber: 13.3 Consensus size: 868
22240259 ATGAAAAACA
22240269 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22240334 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22240399 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22240464 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22240529 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22240594 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22240659 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22240724 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22240789 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22240854 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
22240919 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22240984 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22241049 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22241114 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22241145 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22241210 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22241275 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
*
22241340 AATCCTATCTC-C-C-T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
196 AATCCTATCTCTCACATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
22241401 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
261 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
22241466 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
326 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
22241531 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
391 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
22241596 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
456 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
22241661 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
521 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
22241726 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
586 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
22241791 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
651 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
22241856 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
716 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
22241921 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
781 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
22241986 ATCCTATCTCTCTGAAGTTACAG
846 ATCCTATCTCTCTGAAGTTACAG
22242009 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242074 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22242139 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22242204 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22242269 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22242334 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22242399 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22242464 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22242529 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22242594 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTC-C----
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
*
22242654 ----C--T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22242712 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22242777 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22242842 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22242873 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22242938 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243003 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22243068 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22243133 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22243198 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22243263 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22243328 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22243393 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22243458 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
22243523 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22243588 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22243653 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22243718 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22243749 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22243814 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22243879 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
*
22243944 AATCCTATCTC-C-C-T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
196 AATCCTATCTCTCACATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
22244005 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
261 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
22244070 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
326 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
22244135 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
391 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
22244200 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
456 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
22244265 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
521 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
22244330 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
586 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
22244395 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
651 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
22244460 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
716 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
22244525 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
781 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
22244590 ATCCTATCTCTCTGAAGTTACAG
846 ATCCTATCTCTCTGAAGTTACAG
22244613 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22244678 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22244743 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22244808 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22244873 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22244938 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22245003 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22245068 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22245133 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22245198 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTC-C----
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
*
22245258 ----C--T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22245316 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22245381 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22245446 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22245477 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22245542 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22245607 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22245672 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22245737 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22245802 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22245867 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22245932 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22245997 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22246062 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
22246127 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22246192 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22246257 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22246322 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22246353 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22246418 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22246483 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
*
22246548 AATCCTATCTC-C-C-T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
196 AATCCTATCTCTCACATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
22246609 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
261 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
22246674 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
326 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
22246739 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
391 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
22246804 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
456 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
22246869 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
521 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
22246934 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
586 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
22246999 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
651 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
22247064 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
716 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
22247129 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
781 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
22247194 ATCCTATCTCTCTGAAGTTACAG
846 ATCCTATCTCTCTGAAGTTACAG
22247217 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22247282 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22247347 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22247412 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22247477 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22247542 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22247607 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22247672 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22247737 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22247802 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTC-C----
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
*
22247862 ----C--T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22247920 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22247985 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22248050 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22248081 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22248146 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22248211 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22248276 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22248341 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22248406 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22248471 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22248536 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22248601 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22248666 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
22248731 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22248796 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22248861 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22248926 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
22248957 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249022 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249087 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
*
22249152 AATCCTATCTC-C-C-T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
196 AATCCTATCTCTCACATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
22249213 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
261 TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
22249278 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
326 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
22249343 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
391 GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
22249408 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
456 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
22249473 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
521 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
22249538 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
586 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
22249603 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
651 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
22249668 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
716 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
22249733 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
781 TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
22249798 ATCCTATCTCTCTGAAGTTACAG
846 ATCCTATCTCTCTGAAGTTACAG
22249821 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
22249886 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
66 TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
22249951 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
131 GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
22250016 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
196 AATCCTATCTCTC-------ACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
22250081 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
253 CAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTC
22250146 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
318 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
22250211 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
383 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
22250276 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
448 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTA
22250341 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
513 CAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
22250406 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTC-C----
578 CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAA
*
22250466 ----C--T-GAGAGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
643 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
22250524 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
708 TCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
22250589 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
773 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGA
22250654 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
838 AGCTAGTAATCCTATCTCTCTGAAGTTACAG
* *
22250685 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATT
1 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGAT--C-GC--A-T
* *
22250750 GAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCT
60 -----CAG-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCT
* *
22250815 CCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTA
118 CCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTA
** * * * * * * ***
22250880 GACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAGAGATC
183 GATTGAAGCTA-GT-A-ATCCTATCT--C-----TCACA-TGGAGCGGATTAAAATAAAG-GATC
* ** * * * *
22250943 TTATCTCCCTG-AGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTAC
236 TTATCTCTCTGAAG-TTACAGCAGAGTAGATC---GCA--TCAGGTCTTATCACCCTGAGGTTAC
* * ** * * * * * **
22251007 AGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAG-
295 AGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC
* * * * * * * * *
22251068 AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCC
359 CA---GAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA-ATCCTATCTCTC
* ** ** ** * * ** *
22251132 TG-AGATTACAGGGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGC
420 TGAAG-TTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGT
* * * * *
22251195 AGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCT
481 AGATCGCA-TCAG-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCT
* *
22251260 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGG
543 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCG
** * * * * * * * ***
22251325 GAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAG
608 GAGTAGATTGAAGCTA-GT-A-ATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
* ** * * * *
22251388 AGATCTTATCTCCCTG-AGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
670 -GATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATC---GCA--TCAGGTCTTATCACCCTGAG
* * ** * * * * * **
22251452 GTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACC
728 GTTACAGGGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT
* * * * * * * *
22251514 GAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTAT
792 GAAGCCA---GAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA-ATCCTAT
*
22251577 CTCCCTG-AGATTACAG
853 CTCTCTGAAG-TTACAG
* ** ** ** * * * * * * *
22251593 GGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGAGGTTACAGTACA-TCAGATTGAAGCC
1 TGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGT-AGATCGCA-TC
* * * ** *
22251656 AGAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAGATCTTATCTCCCTGA
61 AG-G-TCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
* * ** *
22251721 GATTACAATGGAGCAGATTGAAGATAGTA-ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTG
124 GGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTG
* * * * *
22251785 AAGATAGTAATCCTATCTGCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTTTT
188 AAGCTAGTAATCCTATCT--C-----TCACA-TGGAGCGGATTAAAATAAAGGATCTTATCTCTC
* * ** *
22251850 TGAAGTTACAGTAGAGGAGATCGTGTCAGGTCTTATCCCCCTGA
245 TGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGA
22251894 TGTTGCAGTG
Statistics
Matches: 10423, Mismatches: 164, Indels: 307
0.96 0.02 0.03
Matches are distributed among these distances:
864 6289 0.60
865 15 0.00
866 1 0.00
867 9 0.00
869 1 0.00
870 1 0.00
873 7 0.00
875 18 0.00
876 3162 0.30
877 122 0.01
878 7 0.00
879 50 0.00
881 2 0.00
882 37 0.00
883 3 0.00
884 99 0.01
885 3 0.00
886 34 0.00
887 5 0.00
888 2 0.00
889 122 0.01
890 1 0.00
891 9 0.00
892 1 0.00
893 17 0.00
895 1 0.00
898 54 0.01
899 7 0.00
900 122 0.01
901 2 0.00
902 7 0.00
903 35 0.00
905 2 0.00
906 37 0.00
907 3 0.00
908 99 0.01
909 4 0.00
910 31 0.00
911 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (868 bp):
TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
TTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACA
GTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGT
AATCCTATCTCTCACATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAG
TAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTA
TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGA
GTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCT
TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAG
TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATC
TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGT
GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
TGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
ATCCTATCTCTCTGAAGTTACAG
Found at i:22250945 original size:180 final size:180
Alignment explanation
Indices: 22250744--22251781 Score: 1952
Period size: 180 Copynumber: 5.8 Consensus size: 180
22250734 TAGATCACAT
22250744 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22250809 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22250874 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
22250924 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22250989 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22251054 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
22251104 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22251169 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22251234 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
22251284 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22251349 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22251414 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
22251464 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22251529 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
** *
22251594 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTACAT
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
* ** *
22251644 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
* * **
22251709 TTATCTCCCTGAGATTACAATGGAGCAGATTGAAGATAGTA-ATCTTATCTCCCTGAGATTACAG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCTGAGATTACAG
*
22251773 CGGAGTAGA
130 GGGAGTAGA
22251782 TTGAAGATAG
Statistics
Matches: 845, Mismatches: 12, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
180 844 1.00
181 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (180 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
Found at i:22251056 original size:270 final size:270
Alignment explanation
Indices: 22250744--22251781 Score: 1952
Period size: 270 Copynumber: 3.8 Consensus size: 270
22250734 TAGATCACAT
22250744 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22250809 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22250874 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
22250939 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
196 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
22251004 TACAGTGGAG
261 TACAGTGGAG
22251014 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22251079 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22251144 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
22251209 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
196 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
22251274 TACAGTGGAG
261 TACAGTGGAG
22251284 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
22251349 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
22251414 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
22251479 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
196 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
22251544 TACAGTGGAG
261 TACAGTGGAG
22251554 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
** * *
22251619 TTATCTCCCTGAGGTTACAGTACATCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGT
66 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
** * * * **
22251684 GGAACAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAATGGAGCAGATTGAAGATAGT
131 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-
*
22251749 A-ATCTTATCTCCCTGAGATTACAGCGGAGTAGA
195 AGATCTTATCTCCCTGAGATTACAGGGGAGTAGA
22251782 TTGAAGATAG
Statistics
Matches: 755, Mismatches: 12, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
270 754 1.00
271 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (270 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATC
TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGG
GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGT
TACAGTGGAG
Found at i:22251846 original size:44 final size:44
Alignment explanation
Indices: 22250760--22251827 Score: 749
Period size: 44 Copynumber: 23.8 Consensus size: 44
22250750 GAAGCCAGAG
* ** *
22250760 ATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22250805 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22250849 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22250895 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22250939 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22250985 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251029 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251075 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251119 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251165 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251209 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251255 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251299 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251345 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251389 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251435 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251479 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* * **
22251525 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* ** *
22251569 GATCTTATCTCCCTGAGATTACAGGGGAGTAGACCGAAGA-ATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* ** **
22251615 GATCTTATCTCCCTGAGGTTACAGTACA-TCAGATTGAAGCCAG-A
1 -ATCTTATCTCCCTGAGATTACAGTGGAGT-AGATTGAAGATAGTA
** ** * *
22251659 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATA-GT-A
* *
22251705 GATCTTATCTCCCTGAGATTACAATGGAGCAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
*
22251750 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
* * *
22251794 ATCCTATCTGCCTGAGATTACAGTGGAGTGGATT
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATT
22251828 AAAATAAAGG
Statistics
Matches: 823, Mismatches: 156, Indels: 88
0.77 0.15 0.08
Matches are distributed among these distances:
43 10 0.01
44 418 0.51
45 2 0.00
46 381 0.46
47 12 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATAGTA
Found at i:22259900 original size:44 final size:44
Alignment explanation
Indices: 22259846--22259933 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
22259836 GGACTTTTAC
*
22259846 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACGTGCCA
1 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACATGCCA
* *
22259890 TAATGGTACTCTTTTATTCTGGAGTTCTTTTACTTTACATGCCA
1 TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACATGCCA
22259934 GAATCCTGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (44 bp):
TAATGATACTCTTTTATTCTGGAGTTCTTTTACTTCACATGCCA
Found at i:22264579 original size:7 final size:7
Alignment explanation
Indices: 22264567--22264591 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22264557 ATTATTAAGC
22264567 AAAAGAA
1 AAAAGAA
22264574 AAAAGAA
1 AAAAGAA
22264581 AAAAGAA
1 AAAAGAA
22264588 AAAA
1 AAAA
22264592 AAATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:22264740 original size:13 final size:12
Alignment explanation
Indices: 22264704--22264741 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
22264694 CCTTTCCCCC
22264704 TCCCTTCTCTC-
1 TCCCTTCTCTCT
22264715 TCCCTTCTCTCT
1 TCCCTTCTCTCT
22264727 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
22264740 TC
1 TC
22264742 TTTTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:22285668 original size:15 final size:15
Alignment explanation
Indices: 22285648--22285691 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
22285638 AACAACTATG
22285648 GAAAAAATGGGAAAA
1 GAAAAAATGGGAAAA
*
22285663 GAAAAAATAGAGAAAA
1 GAAAAAAT-GGGAAAA
22285679 -AAAAACATGGGAA
1 GAAAAA-ATGGGAA
22285692 CAATGGGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.07
Consensus pattern (15 bp):
GAAAAAATGGGAAAA
Found at i:22287393 original size:16 final size:16
Alignment explanation
Indices: 22287362--22287398 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
22287352 ATGTGAAGAA
22287362 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
22287378 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
22287394 TATTA
1 TATTA
22287399 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:22287416 original size:19 final size:18
Alignment explanation
Indices: 22287384--22287419 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22287374 TTATTATTTT
*
22287384 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
22287402 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
22287420 CAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:22288163 original size:15 final size:15
Alignment explanation
Indices: 22288143--22288183 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
22288133 CTTGATAAAT
22288143 TGAAAAATTAAATGC
1 TGAAAAATTAAATGC
* *
22288158 TGAAAAAATAAATGT
1 TGAAAAATTAAATGC
22288173 TGAAAAATTAA
1 TGAAAAATTAA
22288184 GTATTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.02, G:0.12, T:0.27
Consensus pattern (15 bp):
TGAAAAATTAAATGC
Found at i:22288675 original size:56 final size:56
Alignment explanation
Indices: 22288604--22288717 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
22288594 TTTTTTTACT
* *
22288604 TATCTAAATCTGAATTAGCAAATGTGTCTAAAAATATGAATCCGTAAATTATTGAG
1 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
*
22288660 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCTGTAAATTATTGAG
1 TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
22288716 TA
1 TA
22288718 CTATTGTGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (56 bp):
TATCTAAATCCGAATTAGCAAATGTATCTAAAAATATGAATCCGTAAATTATTGAG
Found at i:22308186 original size:10 final size:10
Alignment explanation
Indices: 22308171--22308195 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22308161 CAGTTGTGGT
22308171 AGTTAGCAGC
1 AGTTAGCAGC
22308181 AGTTAGCAGC
1 AGTTAGCAGC
22308191 AGTTA
1 AGTTA
22308196 ACGGTTAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (10 bp):
AGTTAGCAGC
Found at i:22319268 original size:12 final size:12
Alignment explanation
Indices: 22319251--22319275 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22319241 TATATCTATT
22319251 TTATTTATTTAC
1 TTATTTATTTAC
22319263 TTATTTATTTAC
1 TTATTTATTTAC
22319275 T
1 T
22319276 CACCATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTTATTTAC
Found at i:22331708 original size:22 final size:22
Alignment explanation
Indices: 22331659--22331710 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
22331649 TGGTAGCTTC
*
22331659 TGATATAATTTTTAATAACTTT
1 TGATATAATTTTTAATAACCTT
* *
22331681 TAATATGATTTTT-ATAACCCTT
1 TGATATAATTTTTAATAA-CCTT
22331703 TGATATAA
1 TGATATAA
22331711 AGTGTATCAC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.50
Consensus pattern (22 bp):
TGATATAATTTTTAATAACCTT
Found at i:22332640 original size:8 final size:8
Alignment explanation
Indices: 22332627--22332662 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
22332617 TGAAATAAAT
22332627 TTTTATAA
1 TTTTATAA
22332635 TTTTATAA
1 TTTTATAA
*
22332643 ATTTATAA
1 TTTTATAA
*
22332651 ATTTATAA
1 TTTTATAA
22332659 TTTT
1 TTTT
22332663 TTTATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTTATAA
Found at i:22332871 original size:2 final size:2
Alignment explanation
Indices: 22332864--22332893 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22332854 TATAGGAACC
22332864 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22332894 TAACCCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22333766 original size:35 final size:35
Alignment explanation
Indices: 22333691--22333766 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 35
22333681 CCTTGCTATG
* **
22333691 CGAACTCCCTTGCATGAGCAACCCTCCCCTGTATTG
1 CGAACTCCCTTACATGAGCAA-CCTCCCCTGTATCA
* *
22333727 CGAACTCCCTTACATGTGCGAA-CTCTCCTGTATCA
1 CGAACTCCCTTACATGAGC-AACCTCCCCTGTATCA
22333762 CGAAC
1 CGAAC
22333767 ACCCCTTCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 15 0.44
36 17 0.50
37 2 0.06
ACGTcount: A:0.22, C:0.37, G:0.16, T:0.25
Consensus pattern (35 bp):
CGAACTCCCTTACATGAGCAACCTCCCCTGTATCA
Found at i:22334160 original size:28 final size:28
Alignment explanation
Indices: 22334119--22334288 Score: 135
Period size: 28 Copynumber: 6.0 Consensus size: 28
22334109 TTATCTATGT
22334119 GAACTCTATATGTGCAAACCCTAGGTGC
1 GAACTCTATATGTGCAAACCCTAGGTGC
* * * *
22334147 CAACTCTATATGTGTGAACCCCTAGATGC
1 GAACTCTATATGTG-CAAACCCTAGGTGC
* * * * *
22334176 AAACCCTACT-TGTGCGAGCACTAGGTGC
1 GAACTCTA-TATGTGCAAACCCTAGGTGC
* **
22334204 GAACTTTGGATGTGCAAACCCCTAGGTGC
1 GAACTCTATATGTGCAAA-CCCTAGGTGC
* * ** *
22334233 GAACTCTGTATGCGTGAACCCTATGTGC
1 GAACTCTATATGTGCAAACCCTAGGTGC
*
22334261 GAACTCTGTATGTGCAAACCCTTAGGTG
1 GAACTCTATATGTGCAAACCC-TAGGTG
22334289 TGAGCCCTAC
Statistics
Matches: 108, Mismatches: 29, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
28 59 0.55
29 48 0.44
30 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (28 bp):
GAACTCTATATGTGCAAACCCTAGGTGC
Found at i:22334272 original size:15 final size:15
Alignment explanation
Indices: 22334229--22334275 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
22334219 AAACCCCTAG
22334229 GTGCGAACTCTGTAT
1 GTGCGAACTCTGTAT
* * *
22334244 GCGTGAAC-C-CTAT
1 GTGCGAACTCTGTAT
22334257 GTGCGAACTCTGTAT
1 GTGCGAACTCTGTAT
22334272 GTGC
1 GTGC
22334276 AAACCCTTAG
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
13 9 0.38
14 2 0.08
15 13 0.54
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (15 bp):
GTGCGAACTCTGTAT
Found at i:22334306 original size:57 final size:57
Alignment explanation
Indices: 22334200--22334310 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 57
22334190 CGAGCACTAG
* * * *
22334200 GTGCGAACTTTGGATGTGCAAACCCCTAGGTGCGAACTCTGTATGCGTGAACCCTAT
1 GTGCGAACTCTGGATGTGCAAACCCCTAGGTGCGAACCCTCTATACGTGAACCCTAT
* * * *
22334257 GTGCGAACTCTGTATGTGCAAACCCTTAGGTGTGAGCCCTACT-TACGTGAACCC
1 GTGCGAACTCTGGATGTGCAAACCCCTAGGTGCGAACCCT-CTATACGTGAACCC
22334311 CTAAGTGTGC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (57 bp):
GTGCGAACTCTGGATGTGCAAACCCCTAGGTGCGAACCCTCTATACGTGAACCCTAT
Found at i:22335107 original size:13 final size:13
Alignment explanation
Indices: 22335086--22335115 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22335076 ATTATTTTAC
22335086 TTTTAATTAAAAG
1 TTTTAATTAAAAG
*
22335099 TTTTCATTAAAAG
1 TTTTAATTAAAAG
22335112 TTTT
1 TTTT
22335116 TATGATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (13 bp):
TTTTAATTAAAAG
Found at i:22347575 original size:29 final size:30
Alignment explanation
Indices: 22347532--22347593 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
22347522 AAATTTTGTA
*
22347532 TTTGAGTACACATGCTCCTTTTACTTTT-T
1 TTTGAATACACATGCTCCTTTTACTTTTCT
* * *
22347561 TTTGAATACATATGCTCTTTTTTCTTTTCT
1 TTTGAATACACATGCTCCTTTTACTTTTCT
22347591 TTT
1 TTT
22347594 TTTTGATCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.16, C:0.18, G:0.08, T:0.58
Consensus pattern (30 bp):
TTTGAATACACATGCTCCTTTTACTTTTCT
Found at i:22352708 original size:23 final size:23
Alignment explanation
Indices: 22352682--22352727 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
22352672 ATTATACATT
*
22352682 TGAATCTGTAATTGATATGCATC
1 TGAATCTATAATTGATATGCATC
* *
22352705 TGAATCTATATTTGCTATGCATC
1 TGAATCTATAATTGATATGCATC
22352728 GATGTTTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (23 bp):
TGAATCTATAATTGATATGCATC
Found at i:22358078 original size:41 final size:40
Alignment explanation
Indices: 22358033--22358220 Score: 207
Period size: 41 Copynumber: 4.5 Consensus size: 40
22358023 ACATGGTGGG
*
22358033 ATCAGCACTTAGCAACCACCTTATAATTAAGGATACGGGGA
1 ATCAGCACTTAGCAACC-CCTTATAATCAAGGATACGGGGA
* *
22358074 ATCAGCACATAGCAACCCCTTTCACAATCAAGGATACGGTGGA
1 ATCAGCACTTAGCAACCCC-TT-ATAATCAAGGATACGG-GGA
* * *
22358117 ATCAGCAGTTAGCAACCACCTTATAATTAATGATACGGGGA
1 ATCAGCACTTAGCAACC-CCTTATAATCAAGGATACGGGGA
* * * *
22358158 ATCAGCACATAGCAACCCCTTTATGATCAATGATTCGGGGA
1 ATCAGCACTTAGCAACCCC-TTATAATCAAGGATACGGGGA
*
22358199 ATCTA-CATTTAGCAACCCCTTA
1 ATC-AGCACTTAGCAACCCCTTA
22358221 CATTCAAAAA
Statistics
Matches: 126, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
40 7 0.06
41 69 0.55
42 28 0.22
43 20 0.16
44 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (40 bp):
ATCAGCACTTAGCAACCCCTTATAATCAAGGATACGGGGA
Found at i:22358168 original size:84 final size:83
Alignment explanation
Indices: 22358027--22358220 Score: 277
Period size: 84 Copynumber: 2.3 Consensus size: 83
22358017 ACCGTTACAT
*
22358027 GGTGGGATCAGCACTTAGCAACCACCTTATAATTAAGGATACGGGGAATCAGCACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATTAAGGATACGGGGAATCAGCACATAGCAACCC
22358092 CTTTCACAATCAAGGATAC
66 CTTT-ACAATCAAGGATAC
* *
22358111 GGTGGAATCAGCAGTTAGCAACCACCTTATAATTAATGATACGGGGAATCAGCACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATTAAGGATACGGGGAATCAGCACATAGCAACCC
** * *
22358176 CTTTATGATCAATGATTC
66 CTTTACAATCAAGGATAC
*
22358194 GG-GGAATCTA-CATTTAGCAACC-CCTTA
1 GGTGGAATC-AGCACTTAGCAACCACCTTA
22358221 CATTCAAAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
81 5 0.05
82 17 0.17
83 13 0.13
84 66 0.65
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (83 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATTAAGGATACGGGGAATCAGCACATAGCAACCC
CTTTACAATCAAGGATAC
Found at i:22363712 original size:42 final size:42
Alignment explanation
Indices: 22363632--22363713 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
22363622 TGTTTTCTCT
* * **
22363632 ATGCCATAGTCCAACTGTGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
22363674 ATGCCATAGCCCACCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
22363714 CACACTGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:22365920 original size:44 final size:42
Alignment explanation
Indices: 22365851--22366047 Score: 215
Period size: 41 Copynumber: 4.7 Consensus size: 42
22365841 TAACCGTTAC
* * **
22365851 ACGGTTGAATCAGCACTTAGAAACCACCTTATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATC-AAGGAT
* *
22365894 CCCGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 -ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAAGGAT
* *
22365937 ACGG-GGAATTAGCACATAGCAACC-CCTT-TCAAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTAT--AATCAAGGAT
*
22365978 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAAGGAT
* * *
22366020 TCGG-GGAATCAGCACATCGCAACC-CCTT
1 ACGGTGGAATCAGCACTTAGCAACCACCTT
22366048 TTTGGTCAAT
Statistics
Matches: 132, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.01
40 8 0.06
41 49 0.37
42 33 0.25
43 9 0.07
44 32 0.24
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAAGGAT
Found at i:22365989 original size:83 final size:83
Alignment explanation
Indices: 22365896--22366048 Score: 279
Period size: 83 Copynumber: 1.8 Consensus size: 83
22365886 CAAAGGATCC
*
22365896 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
22365961 CCTTTCAAATCAAGGATA
66 CCTTTCAAATCAAGGATA
* *
22365979 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATTCGGGGAATCAGCACATCGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
22366044 CCTTT
66 CCTTT
22366049 TTGGTCAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (83 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCAAATCAAGGATA
Found at i:22366085 original size:124 final size:127
Alignment explanation
Indices: 22365851--22366088 Score: 279
Period size: 124 Copynumber: 1.9 Consensus size: 127
22365841 TAACCGTTAC
* ** *
22365851 ACGGTTGAATCAGCACTTAGAAACCACCTTATGTTCAAAGGATCCCGGTGGAATCAGCACTTAGC
1 ACGGTGGAATCAGCACTTAGAAACCACCTTATAATCAAAGGATCCCGGTGGAATCAGCACATAGC
* *
22365916 AACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACCCCTTTCAAATCAAGGAT
66 AACCACCTTATAATCAATGATACAGAGAATTAGCACATAGCAACCCCTTTCAAATCAAGGAT
* * * *
22365978 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATC-AATGAT-TCGG-GGAATCAGCACATCGC
1 ACGGTGGAATCAGCACTTAGAAACCACCTTATAATCAAAGGATCCCGGTGGAATCAGCACATAGC
* ** * * *
22366040 AACC-CCTTTTTGGTCAATGATTCAGAGAATCT-GCACTTAGTAACCCCTT
66 AACCACC-TTATAATCAATGATACAGAGAAT-TAGCACATAGCAACCCCTT
22366089 ACATTCAAAG
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
123 2 0.02
124 50 0.54
125 4 0.04
126 5 0.05
127 32 0.34
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (127 bp):
ACGGTGGAATCAGCACTTAGAAACCACCTTATAATCAAAGGATCCCGGTGGAATCAGCACATAGC
AACCACCTTATAATCAATGATACAGAGAATTAGCACATAGCAACCCCTTTCAAATCAAGGAT
Found at i:22378049 original size:15 final size:15
Alignment explanation
Indices: 22378009--22378053 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
22377999 ACCATTTGTG
*
22378009 TATGATATGTAATGA
1 TATGATATGTGATGA
22378024 TATGATATGTGATGA
1 TATGATATGTGATGA
* *
22378039 TGTGATTTGTGATGA
1 TATGATATGTGATGA
22378054 AAAAGAAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (15 bp):
TATGATATGTGATGA
Found at i:22381901 original size:8 final size:8
Alignment explanation
Indices: 22381888--22381913 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
22381878 ACCTAACTAT
22381888 ACCTTTCA
1 ACCTTTCA
22381896 ACCTTTCA
1 ACCTTTCA
22381904 ACCTTTCA
1 ACCTTTCA
22381912 AC
1 AC
22381914 TTCACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (8 bp):
ACCTTTCA
Found at i:22383078 original size:30 final size:30
Alignment explanation
Indices: 22383022--22383078 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
22383012 TAATAGCCAC
* *
22383022 AAAGTCTCACATATAGCAAGTTCCCGCTAT
1 AAAGGCTCACATATAGCAAGTACCCGCTAT
*
22383052 AAAGGCTCACATTTA-CTAAGTACCCGC
1 AAAGGCTCACATATAGC-AAGTACCCGC
22383079 CACAAGGGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.04
30 22 0.96
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (30 bp):
AAAGGCTCACATATAGCAAGTACCCGCTAT
Found at i:22386411 original size:20 final size:20
Alignment explanation
Indices: 22386382--22386419 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22386372 AAAATGTGAT
22386382 AAATAAAAG-TTTAGAGGGA
1 AAATAAAAGTTTTAGAGGGA
22386401 AAATAAAAAGTTTTAGAGG
1 AAAT-AAAAGTTTTAGAGG
22386420 TTGAGGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24
Consensus pattern (20 bp):
AAATAAAAGTTTTAGAGGGA
Found at i:22386474 original size:17 final size:17
Alignment explanation
Indices: 22386422--22386476 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
22386412 TTTAGAGGTT
*
22386422 GAGGAAGTAAAATTTTG
1 GAGGGAGTAAAATTTTG
* *
22386439 GGGGGAATATAAA---TG
1 GAGGGAGTA-AAATTTTG
22386454 GAGGGAGTAAAATTTTG
1 GAGGGAGTAAAATTTTG
22386471 GAGGGA
1 GAGGGA
22386477 AAATATTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
14 3 0.10
15 9 0.31
17 14 0.48
18 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (17 bp):
GAGGGAGTAAAATTTTG
Found at i:22386803 original size:18 final size:19
Alignment explanation
Indices: 22386780--22386816 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
22386770 GAAAGTGGAA
22386780 GGAAGTAAA-AGGTTTGGG
1 GGAAGTAAAGAGGTTTGGG
22386798 GGAAGTAAAGAGGTTTGGG
1 GGAAGTAAAGAGGTTTGGG
22386817 AGTTTGGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.32, C:0.00, G:0.46, T:0.22
Consensus pattern (19 bp):
GGAAGTAAAGAGGTTTGGG
Found at i:22388675 original size:51 final size:51
Alignment explanation
Indices: 22388616--22388903 Score: 278
Period size: 51 Copynumber: 5.7 Consensus size: 51
22388606 TATCGATGAA
* * *
22388616 CACGTGTGTAGCACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * * * * * * *
22388667 CACATGTGTAGTATTAAGTGAAGGCTACAATGTGTACCAAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATGTTGGT
* ** *
22388718 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGAATTGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * * * *
22388769 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-GAAA-GCTTTTGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATG--TTGGT
* ** *
22388820 CACGTGTGTGGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
*
22388870 CACGTGTGTAGTACTATGTGAAAGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
22388904 TATCGAATAA
Statistics
Matches: 186, Mismatches: 46, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
49 1 0.01
50 39 0.21
51 145 0.78
52 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
Found at i:22388792 original size:102 final size:102
Alignment explanation
Indices: 22388616--22388897 Score: 397
Period size: 102 Copynumber: 2.8 Consensus size: 102
22388606 TATCGATGAA
* *
22388616 CACGTGTGTAGCACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
22388681 TAAGTGAAGGCTACAATGTGTACCA-AGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCAGA-AAGCTTTGGT
* *
22388718 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGAATTGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * *
22388783 TAAGTGAAGGCTACTATGTGTACCGGAAAGCTTTTGT
66 TAAGTGAAGGCTACAATGTGTACCAGAAAGCTTTGGT
* * *** * *
22388820 CACGTGTGTGGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
22388884 TATGTGAAAGCTAC
66 TAAGTGAAGGCTAC
22388898 TACGTGTATC
Statistics
Matches: 161, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
101 32 0.20
102 128 0.80
103 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCAGAAAGCTTTGGT
Found at i:22394609 original size:28 final size:28
Alignment explanation
Indices: 22394577--22394666 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
22394567 AACTCAACTG
*
22394577 GCGAACCCTCAGTTAGCTAAACAGACTA
1 GCGAACCCTCAGTTAGCCAAACAGACTA
* *
22394605 GCGAACCCCCAATTCA-CCAAACATG-CTA
1 GCGAACCCTCAGTT-AGCCAAACA-GACTA
* *
22394633 GTGAACCCTCAGTTTGCCAAACAGACTA
1 GCGAACCCTCAGTTAGCCAAACAGACTA
*
22394661 GTGAAC
1 GCGAAC
22394667 TCAACTTACG
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
27 1 0.02
28 48 0.94
29 2 0.04
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.18
Consensus pattern (28 bp):
GCGAACCCTCAGTTAGCCAAACAGACTA
Found at i:22398180 original size:15 final size:16
Alignment explanation
Indices: 22398155--22398185 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
22398145 AGTTTAAAGT
22398155 TGTTCTAACTATTCTA
1 TGTTCTAACTATTCTA
22398171 TGTT-TAACTATTCTA
1 TGTTCTAACTATTCTA
22398186 ATACATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (16 bp):
TGTTCTAACTATTCTA
Found at i:22399922 original size:9 final size:9
Alignment explanation
Indices: 22399908--22400029 Score: 58
Period size: 9 Copynumber: 13.3 Consensus size: 9
22399898 ACATGTGGCA
22399908 AAAAATTAT
1 AAAAATTAT
22399917 -AAAA--AT
1 AAAAATTAT
*
22399923 AAAAATCAAT
1 AAAAAT-TAT
**
22399933 AAATTTTAT
1 AAAAATTAT
22399942 AAAAATTATT
1 AAAAATTA-T
**
22399952 AAATTTTAAT
1 AAAAATT-AT
22399962 AAAAA-TAT
1 AAAAATTAT
22399970 -AAAATATATT
1 AAAAAT-TA-T
22399980 AAAAATTAT
1 AAAAATTAT
* *
22399989 AAAATTTGT
1 AAAAATTAT
22399998 AGGAAAATTAT
1 A--AAAATTAT
*
22400009 -AAAATATAA
1 AAAAAT-TAT
22400018 AAAAATTAT
1 AAAAATTAT
22400027 AAA
1 AAA
22400030 TTTTTTTAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
6 2 0.02
7 8 0.10
8 11 0.13
9 27 0.32
10 24 0.29
11 12 0.14
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:22399945 original size:19 final size:20
Alignment explanation
Indices: 22399920--22399967 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
22399910 AAATTATAAA
22399920 AATAAAAATCAATAAATTTT
1 AATAAAAATCAATAAATTTT
* *
22399940 -ATAAAAATTATTAAATTTT
1 AATAAAAATCAATAAATTTT
22399959 AATAAAAAT
1 AATAAAAAT
22399968 ATAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAAAAATCAATAAATTTT
Found at i:22399974 original size:19 final size:19
Alignment explanation
Indices: 22399920--22400033 Score: 69
Period size: 19 Copynumber: 6.0 Consensus size: 19
22399910 AAATTATAAA
22399920 AATAAAAATCA-ATAAATTTT
1 AATAAAAAT-ATA-AAATTTT
*
22399940 -ATAAAAATTATTAAATTTT
1 AATAAAAA-TATAAAATTTT
*
22399959 AATAAAAATATAAAA-TAT
1 AATAAAAATATAAAATTTT
*
22399977 ATTAAAAATTATAAAATTTGT
1 AATAAAAA-TATAAAATTT-T
** * *
22399998 AGGAAAATTATAAAA-TAT
1 AATAAAAATATAAAATTTT
22400016 AA-AAAAAT-TATAAATTTT
1 AATAAAAATATA-AAATTTT
22400034 TTTAAAGTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
16 2 0.03
17 8 0.11
18 13 0.18
19 29 0.39
20 16 0.22
21 6 0.08
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.37
Consensus pattern (19 bp):
AATAAAAATATAAAATTTT
Found at i:22399987 original size:38 final size:37
Alignment explanation
Indices: 22399939--22400033 Score: 120
Period size: 38 Copynumber: 2.5 Consensus size: 37
22399929 CAATAAATTT
*
22399939 TATAAAAATTATTAAATTTTAATAAAAATATAAAATA
1 TATAAAAATTATTAAATTTTAAGAAAAATATAAAATA
* * *
22399976 TATTAAAAATTATAAAATTTGTAGGAAAATTATAAAATA
1 TA-TAAAAATTATTAAATTT-TAAGAAAAATATAAAATA
*
22400015 TAAAAAAATTA-TAAATTTT
1 TATAAAAATTATTAAATTTT
22400034 TTTAAAGTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
36 1 0.02
37 8 0.16
38 24 0.48
39 17 0.34
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (37 bp):
TATAAAAATTATTAAATTTTAAGAAAAATATAAAATA
Found at i:22400297 original size:11 final size:11
Alignment explanation
Indices: 22400281--22400324 Score: 74
Period size: 11 Copynumber: 4.2 Consensus size: 11
22400271 TCTTGATGCA
22400281 TTTTATAATTT
1 TTTTATAATTT
22400292 TTTTATAA--T
1 TTTTATAATTT
22400301 TTTTATAATTT
1 TTTTATAATTT
22400312 TTTTATAATTT
1 TTTTATAATTT
22400323 TT
1 TT
22400325 AATCAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.29
11 22 0.71
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:22400306 original size:20 final size:20
Alignment explanation
Indices: 22400281--22400325 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
22400271 TCTTGATGCA
22400281 TTTTATAATTTTTTTATAAT
1 TTTTATAATTTTTTTATAAT
22400301 TTTTATAATTTTTTTATAAT
1 TTTTATAATTTTTTTATAAT
22400321 TTTTA
1 TTTTA
22400326 ATCAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATAATTTTTTTATAAT
Found at i:22400332 original size:11 final size:9
Alignment explanation
Indices: 22400281--22400408 Score: 73
Period size: 9 Copynumber: 13.4 Consensus size: 9
22400271 TCTTGATGCA
22400281 TTTTATAATTT
1 TTTTATAA--T
22400292 TTTTATAAT
1 TTTTATAAT
22400301 TTTTATAATTT
1 TTTTATAA--T
22400312 TTTTATAAT
1 TTTTATAAT
22400321 TTTTAATCAAT
1 TTTT-AT-AAT
* *
22400332 TTTAAATATT
1 TTT-TATAAT
22400342 TTTTAT-AT
1 TTTTATAAT
*
22400350 TTTTATTAAA
1 TTTTA-TAAT
* *
22400360 ATTTAGTGAT
1 TTTTA-TAAT
*
22400370 TTTTATAAA
1 TTTTATAAT
*
22400379 TTTTATTGAT
1 TTTTA-TAAT
22400389 TTTTAT--T
1 TTTTATAAT
*
22400396 TTTTATTAT
1 TTTTATAAT
22400405 TTTT
1 TTTT
22400409 TGTCACATGT
Statistics
Matches: 93, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
7 7 0.08
8 6 0.06
9 30 0.32
10 25 0.27
11 25 0.27
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTATAAT
Found at i:22400334 original size:20 final size:19
Alignment explanation
Indices: 22400281--22400353 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
22400271 TCTTGATGCA
22400281 TTTTATAATTTTTTTATAAT
1 TTTTATAA-TTTTTTATAAT
22400301 TTTTATAATTTTTTTATAAT
1 TTTTATAA-TTTTTTATAAT
** *
22400321 TTTTAATCAATTTTAAATATT
1 TTTT-AT-AATTTTTTATAAT
22400342 TTTTAT-ATTTTT
1 TTTTATAATTTTT
22400354 ATTAAAATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.11
20 26 0.55
21 14 0.30
22 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTATAATTTTTTATAAT
Found at i:22400373 original size:20 final size:20
Alignment explanation
Indices: 22400348--22400395 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
22400338 TATTTTTTAT
22400348 ATTTTTATTAAAATTTAGTG
1 ATTTTTATTAAAATTTAGTG
* *
22400368 ATTTTTA-TAAATTTTATTG
1 ATTTTTATTAAAATTTAGTG
22400387 ATTTTTATT
1 ATTTTTATT
22400396 TTTTATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTTTATTAAAATTTAGTG
Found at i:22400652 original size:92 final size:86
Alignment explanation
Indices: 22400513--22400813 Score: 299
Period size: 92 Copynumber: 3.4 Consensus size: 86
22400503 TCAAAGGGTC
** * *
22400513 TTTTTTATGCATTTTGGCAGTTCAAGTACCCAATTG-GATGCAGAAAAAAAAAGGGCTTAATTGT
1 TTTTTTATGCATTTTGAAAGTTCAAGTA-CCAATTGAG-TGAAAAAAAAAAAAGGGCTTAATTGT
*
22400577 TTTTTTTTTTGAAAAAAAATTGA-AGGTT
64 TTTTTTTTTT-----AAAATTGAGA-GCT
* * *
22400605 TTTTTTATGCATTTTGAAAGTTCAAGTACTCAATTGAGTGAAAAAAAAGAAGGGGCTTAATTG-C
1 TTTTTTATGCATTTTGAAAGTTCAAGTAC-CAATTGAGTGAAAAAAAAAAAAGGGCTTAATTGTT
**
22400669 TTTTTTTTTAAGTTTGAGAGCT
65 TTTTTTTTTAAAATTGAGAGCT
* *
22400691 TTTTTGATGCATTTTGAAAGTTCAAGTACCTAATTGAGTGAAAAAAAAAAGAAAGAGCTTAATTG
1 TTTTTTATGCATTTTGAAAGTTCAAGTACC-AATTGAGTG-AAAAAAAAA-AAAGGGCTTAATTG
* *
22400756 -TTTTTTTTTT-AAATTAAGAACT
63 TTTTTTTTTTTAAAATTGAGAGCT
*
22400778 TTTTTTATACA-TTTGAAAAGTTCAAGTAACCAATTG
1 TTTTTTATGCATTTTG-AAAGTTCAAGT-ACCAATTG
22400814 GTTTAATTGT
Statistics
Matches: 180, Mismatches: 21, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
85 1 0.01
86 49 0.27
87 42 0.23
88 24 0.13
91 10 0.06
92 53 0.29
93 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (86 bp):
TTTTTTATGCATTTTGAAAGTTCAAGTACCAATTGAGTGAAAAAAAAAAAAGGGCTTAATTGTTT
TTTTTTTTAAAATTGAGAGCT
Found at i:22402258 original size:15 final size:14
Alignment explanation
Indices: 22402234--22402264 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
22402224 CCATGATTAA
22402234 TTTTATCATTTTAT
1 TTTTATCATTTTAT
22402248 TTTTCATCATTTTAT
1 TTTT-ATCATTTTAT
22402263 TT
1 TT
22402265 GTTTATTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTATCATTTTAT
Found at i:22404822 original size:6 final size:6
Alignment explanation
Indices: 22404811--22404843 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
22404801 GTGTGTTGAA
22404811 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
22404844 AGATTCAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:22404879 original size:6 final size:6
Alignment explanation
Indices: 22404868--22404895 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
22404858 GTATGTTGAA
22404868 TACTGT TACTGT TACTGT TACTGT TACT
1 TACTGT TACTGT TACTGT TACTGT TACT
22404896 ACTACCGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
TACTGT
Found at i:22407461 original size:28 final size:27
Alignment explanation
Indices: 22407375--22407464 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
22407365 GTGACAGAGT
*
22407375 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
22407404 CACCAGAATAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
22407431 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
22407459 CACCAG
1 CACCAG
22407465 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:22407617 original size:28 final size:28
Alignment explanation
Indices: 22407570--22407661 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
22407560 AAGTTAACCC
*
22407570 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
22407598 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
22407626 TAGGGGTATAATGGTAATTTTGTATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
22407654 TAGGGGTA
1 TAGGGGTA
22407662 CTCTAGTACA
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:22418841 original size:7 final size:7
Alignment explanation
Indices: 22418829--22418861 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
22418819 CACTTCCTTT
22418829 TTTTTTC
1 TTTTTTC
22418836 TTTTTTC
1 TTTTTTC
22418843 TTTTTT-
1 TTTTTTC
22418849 TTTTATTC
1 TTTT-TTC
22418857 TTTTT
1 TTTTT
22418862 AATGCCTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:22420457 original size:27 final size:27
Alignment explanation
Indices: 22420427--22420481 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
22420417 ACAACTCCCT
22420427 CAGCTACAACAACAACAACAGCAGCAG
1 CAGCTACAACAACAACAACAGCAGCAG
* * **
22420454 CAGCTACCACAGCTGCAACAGCAGCAG
1 CAGCTACAACAACAACAACAGCAGCAG
22420481 C
1 C
22420482 TTTCCCAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.36, G:0.18, T:0.05
Consensus pattern (27 bp):
CAGCTACAACAACAACAACAGCAGCAG
Found at i:22420475 original size:24 final size:24
Alignment explanation
Indices: 22420448--22420500 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
22420438 ACAACAACAG
22420448 CAGCAGCAGC-TACCACAGCTGCAA
1 CAGCAGCAGCTTACC-CAGCTGCAA
* *
22420472 CAGCAGCAGCTTTCCCAGCTGCAG
1 CAGCAGCAGCTTACCCAGCTGCAA
22420496 CAGCA
1 CAGCA
22420501 ACAACAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.28, C:0.38, G:0.23, T:0.11
Consensus pattern (24 bp):
CAGCAGCAGCTTACCCAGCTGCAA
Found at i:22420533 original size:84 final size:84
Alignment explanation
Indices: 22420351--22420536 Score: 200
Period size: 84 Copynumber: 2.2 Consensus size: 84
22420341 AGCCCCAGTT
*
22420351 ACAGCAGCAGCAACAGCAGCAGAATCCACAGCTGCAACAACAGCAGCTTCCGCACTTGCAGCAGC
1 ACAGCAGCAGCAGCAGCAGCAGAATCCACAGCTGCAACAACAGCAGCTTCCGCACTTGCAGCAGC
** ** *
22420416 AACAACTCCCTCAGCTACA
66 AACAACAACAACAGCAACA
* * * * *
22420435 ACAACAACAACAGCAGCAGCAG-CTACCACAGCTGCAACAGCAGCAGCTTTCC-CAGC-TGCAGC
1 ACAGCAGCAGCAGCAGCAGCAGAAT-CCACAGCTGCAACAACAGCAGC-TTCCGCA-CTTGCAGC
22420497 AGCAACAACAACAACAG-AAGCA
63 AGCAACAACAACAACAGCAA-CA
*
22420519 GCAGCAGCAGCAGCAGCA
1 ACAGCAGCAGCAGCAGCA
22420537 ACAGTCGCAA
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
83 2 0.02
84 76 0.92
85 5 0.06
ACGTcount: A:0.37, C:0.35, G:0.19, T:0.08
Consensus pattern (84 bp):
ACAGCAGCAGCAGCAGCAGCAGAATCCACAGCTGCAACAACAGCAGCTTCCGCACTTGCAGCAGC
AACAACAACAACAGCAACA
Found at i:22422089 original size:12 final size:12
Alignment explanation
Indices: 22422072--22422096 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22422062 CCAAAGCTGT
22422072 CACTTCTCATTC
1 CACTTCTCATTC
22422084 CACTTCTCATTC
1 CACTTCTCATTC
22422096 C
1 C
22422097 TTGGGTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.44, G:0.00, T:0.40
Consensus pattern (12 bp):
CACTTCTCATTC
Found at i:22426350 original size:21 final size:21
Alignment explanation
Indices: 22426300--22426351 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22426290 AATAATAATG
*
22426300 TCGATTCAAACAACAAAAGAA
1 TCGATTCAAACAACAAAACAA
* *
22426321 TCGAGTCAATCAACAAAACAA
1 TCGATTCAAACAACAAAACAA
22426342 TCTG-TTCAAA
1 TC-GATTCAAA
22426352 GTGGCTACAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.50, C:0.21, G:0.10, T:0.19
Consensus pattern (21 bp):
TCGATTCAAACAACAAAACAA
Found at i:22428760 original size:20 final size:20
Alignment explanation
Indices: 22428737--22428807 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
22428727 GAATCAAGTT
*
22428737 AAACAACAAAGAATTGATTC
1 AAACAACAAAGAATCGATTC
* *
22428757 AAACAATAATGAATCGATTC
1 AAACAACAAAGAATCGATTC
* * * *
22428777 AAATAGCAAAAGAATCAAGTC
1 AAACAAC-AAAGAATCGATTC
*
22428798 AATCAACAAA
1 AAACAACAAA
22428808 ACAATATATT
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
20 24 0.63
21 14 0.37
ACGTcount: A:0.56, C:0.15, G:0.10, T:0.18
Consensus pattern (20 bp):
AAACAACAAAGAATCGATTC
Found at i:22431993 original size:18 final size:18
Alignment explanation
Indices: 22431950--22431995 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
22431940 TAAGGTCACG
* *
22431950 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTAGC
22431968 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
22431986 ATCAATATCG
1 ATCAATATCG
22431996 ACATCATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Found at i:22434398 original size:21 final size:21
Alignment explanation
Indices: 22434368--22434456 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
22434358 CTCACAAAGA
* *
22434368 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
22434388 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
22434409 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
22434430 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
22434454 AAA
1 AAA
22434457 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:22434449 original size:24 final size:21
Alignment explanation
Indices: 22434368--22434436 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
22434358 CTCACAAAGA
* * *
22434368 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
22434388 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
22434409 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
22434430 AAAAAGA
1 AAAAAGA
22434437 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:22438912 original size:274 final size:275
Alignment explanation
Indices: 22438422--22438946 Score: 998
Period size: 274 Copynumber: 1.9 Consensus size: 275
22438412 TTCTGTCCAT
* *
22438422 AATGTTAGAACTTTTGCCATTGTATTTCCACTTTTTTTTCGTAGGTGAAAGGTTTGGATGTAGAC
1 AATGTTAAAACTTTTGCCATTGTATTTCCACTTTTTTTTCGTAGGTAAAAGGTTTGGATGTAGAC
22438487 TCACTTATCATATCTCACATCCAAGTGAACCAAGCACAGAAGCAAAGGCGCCGAACATATCGTGC
66 TCACTTATCATATCTCACATCCAAGTGAACCAAGCACAGAAGCAAAGGCGCCGAACATATCGTGC
22438552 ACACGGAAGGATTAACCGTGAGTAATTTCTTTTACCTTCCTTACTCTACATTTGGGTTGTGGTTC
131 ACACGGAAGGATTAACCGTGAGTAATTTCTTTTACCTTCCTTACTCTACATTTGGGTTGTGGTTC
22438617 TAATTTTCCGAGCTGTGTCGGTTTTTTTGTTATGCAGCCTACATGTCTTCACCGTGATCAACATT
196 TAATTTTCCGAGCTGTGTCGGTTTTTTTGTTATGCAGCCTACATGTCTTCACCGTGATCAACATT
22438682 TTGCTTTATTTTGTC
261 TTGCTTTATTTTGTC
* * *
22438697 AATGTTAAAACTTTTGCCATTGTCTTTCTAC-TTTTTTTCTTAGGTAAAAGGTTTGGATGTAGAC
1 AATGTTAAAACTTTTGCCATTGTATTTCCACTTTTTTTTCGTAGGTAAAAGGTTTGGATGTAGAC
22438761 TCACTTATCATATCTCACATCCAAGTGAACCAAGCACAGAAGCAAAGGCGCCGAACATATCGTGC
66 TCACTTATCATATCTCACATCCAAGTGAACCAAGCACAGAAGCAAAGGCGCCGAACATATCGTGC
22438826 ACACGGAAGGATTAACCGTGAGTAATTTCTTTTACCTTCCTTACTCTACATTTGGGTTGTGGTTC
131 ACACGGAAGGATTAACCGTGAGTAATTTCTTTTACCTTCCTTACTCTACATTTGGGTTGTGGTTC
22438891 TAATTTTCCGAGCTGTGTCGGTTTTTTTGTTATGCAGCCTACATGTCTTCACCGTG
196 TAATTTTCCGAGCTGTGTCGGTTTTTTTGTTATGCAGCCTACATGTCTTCACCGTG
22438947 CCACATTGAA
Statistics
Matches: 245, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
274 217 0.89
275 28 0.11
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (275 bp):
AATGTTAAAACTTTTGCCATTGTATTTCCACTTTTTTTTCGTAGGTAAAAGGTTTGGATGTAGAC
TCACTTATCATATCTCACATCCAAGTGAACCAAGCACAGAAGCAAAGGCGCCGAACATATCGTGC
ACACGGAAGGATTAACCGTGAGTAATTTCTTTTACCTTCCTTACTCTACATTTGGGTTGTGGTTC
TAATTTTCCGAGCTGTGTCGGTTTTTTTGTTATGCAGCCTACATGTCTTCACCGTGATCAACATT
TTGCTTTATTTTGTC
Found at i:22438995 original size:18 final size:18
Alignment explanation
Indices: 22438972--22439006 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22438962 CCTGTCTGAG
*
22438972 AAAGAGGAACCTGTCAAA
1 AAAGAGGAACCTCTCAAA
*
22438990 AAAGAGGTACCTCTCAA
1 AAAGAGGAACCTCTCAA
22439007 GATCATTGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (18 bp):
AAAGAGGAACCTCTCAAA
Found at i:22442617 original size:21 final size:21
Alignment explanation
Indices: 22442584--22442634 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22442574 ATGATTTTTT
22442584 ATTT-TTA-TATATTATTTAA
1 ATTTATTATTATATTATTTAA
*
22442603 ATTTATTATTATATTTTTTAA
1 ATTTATTATTATATTATTTAA
*
22442624 AATTATGTATT
1 ATTTAT-TATT
22442635 TTTCTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 4 0.15
20 3 0.11
21 16 0.59
22 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTATTATTATATTATTTAA
Found at i:22467424 original size:15 final size:15
Alignment explanation
Indices: 22467391--22467436 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
22467381 AGTTATGATA
* *
22467391 AATTTAGTTTTTAAT
1 AATTTATTTTTTATT
22467406 -ATTTATTTTTTATT
1 AATTTATTTTTTATT
22467420 AATTTAATTTTTT-TT
1 AATTT-ATTTTTTATT
22467435 AA
1 AA
22467437 AGTTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.44
15 8 0.30
16 7 0.26
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
AATTTATTTTTTATT
Found at i:22468352 original size:21 final size:22
Alignment explanation
Indices: 22468315--22468356 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
22468305 GTGGTTTAAC
22468315 TAAATTTTTAATATATATATTA
1 TAAATTTTTAATATATATATTA
22468337 TAAATTTTTAAT-TATATATT
1 TAAATTTTTAATATATATATT
22468357 TAATTGAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TAAATTTTTAATATATATATTA
Found at i:22471948 original size:30 final size:30
Alignment explanation
Indices: 22471869--22471984 Score: 108
Period size: 30 Copynumber: 3.9 Consensus size: 30
22471859 GTGGGCATTT
* * * * *
22471869 TTGAGGCTTCTAAGAGTTCTCCATGGACAA
1 TTGACGCTTCTACGACTTCTGCATGGACAG
* * *
22471899 TTGCCGCTTCTGCGGCTTCTGCATGGACAG
1 TTGACGCTTCTACGACTTCTGCATGGACAG
* *
22471929 TTGACGCTTCTACGACTTCTGCATAGATAG
1 TTGACGCTTCTACGACTTCTGCATGGACAG
* *
22471959 TCGGCGCTTC-AGCGACTTCTGCATGG
1 TTGACGCTTCTA-CGACTTCTGCATGG
22471985 TCCGTCGGCG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
29 1 0.01
30 68 0.99
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (30 bp):
TTGACGCTTCTACGACTTCTGCATGGACAG
Found at i:22471992 original size:30 final size:30
Alignment explanation
Indices: 22471903--22471997 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
22471893 GGACAATTGC
* * * * *
22471903 CGCTTCTGCGGCTTCTGCATGGACAGTTGA
1 CGCTTCAGCGACTTCTGCATGGTCAGTCGG
*
22471933 CGCTTCTA-CGACTTCTGCATAGAT-AGTCGG
1 CGCTTC-AGCGACTTCTGCAT-GGTCAGTCGG
*
22471963 CGCTTCAGCGACTTCTGCATGGTCCGTCGG
1 CGCTTCAGCGACTTCTGCATGGTCAGTCGG
22471993 CGCTT
1 CGCTT
22471998 TTGTAGCTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
29 3 0.06
30 49 0.92
31 1 0.02
ACGTcount: A:0.14, C:0.29, G:0.27, T:0.29
Consensus pattern (30 bp):
CGCTTCAGCGACTTCTGCATGGTCAGTCGG
Found at i:22472431 original size:23 final size:24
Alignment explanation
Indices: 22472396--22472443 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
22472386 TATAAGTATT
*
22472396 AATTATTTGTAATTAGT-ATTTTA
1 AATTATTTGTAATTAATGATTTTA
* *
22472419 AATTTTTTTTAATTAATGATTTTA
1 AATTATTTGTAATTAATGATTTTA
22472443 A
1 A
22472444 CCATTTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (24 bp):
AATTATTTGTAATTAATGATTTTA
Found at i:22473667 original size:99 final size:99
Alignment explanation
Indices: 22473496--22473693 Score: 378
Period size: 99 Copynumber: 2.0 Consensus size: 99
22473486 TTAGTTAACA
22473496 GTATTGATTATTTAAACTAACTAATGATATTATAAAAGTGGAGGGACTAAATTATCTAAACAATT
1 GTATTGATTATTTAAACTAACTAATGATATTATAAAAGTGGAGGGACTAAATTATCTAAACAATT
* *
22473561 AAAATGTATGGTTTATATCTAGGTTTTAGCATAG
66 AAAATGTATGGTTTAAATCTAAGTTTTAGCATAG
22473595 GTATTGATTATTTAAACTAACTAATGATATTATAAAAGTGGAGGGACTAAATTATCTAAACAATT
1 GTATTGATTATTTAAACTAACTAATGATATTATAAAAGTGGAGGGACTAAATTATCTAAACAATT
22473660 AAAATGTATGGTTTAAATCTAAGTTTTAGCATAG
66 AAAATGTATGGTTTAAATCTAAGTTTTAGCATAG
22473694 TATAAAGACA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 97 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (99 bp):
GTATTGATTATTTAAACTAACTAATGATATTATAAAAGTGGAGGGACTAAATTATCTAAACAATT
AAAATGTATGGTTTAAATCTAAGTTTTAGCATAG
Found at i:22474237 original size:24 final size:24
Alignment explanation
Indices: 22474205--22474255 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
22474195 GTGAGTTTTA
22474205 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
22474229 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
22474253 AAT
1 AAT
22474256 GTTTTTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (24 bp):
AATTCTGACCTAAATTAATCTGCC
Found at i:22487993 original size:10 final size:10
Alignment explanation
Indices: 22487923--22488005 Score: 76
Period size: 10 Copynumber: 8.2 Consensus size: 10
22487913 GCAATAGAGT
22487923 AAATGAGCTGG
1 AAATGAGCT-G
* **
22487934 AAATAAATTG
1 AAATGAGCTG
*
22487944 AAATGAGCTC
1 AAATGAGCTG
22487954 AAATGAGCTG
1 AAATGAGCTG
* *
22487964 AAATGACCTC
1 AAATGAGCTG
22487974 AAATGAGCTG
1 AAATGAGCTG
*
22487984 AAACGAGCTG
1 AAATGAGCTG
**
22487994 ATTTGAGCTG
1 AAATGAGCTG
22488004 AA
1 AA
22488006 TGGAGCTTGG
Statistics
Matches: 55, Mismatches: 17, Indels: 1
0.75 0.23 0.01
Matches are distributed among these distances:
10 49 0.89
11 6 0.11
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (10 bp):
AAATGAGCTG
Found at i:22489135 original size:26 final size:26
Alignment explanation
Indices: 22489106--22489176 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
22489096 CATTCTGACA
* *
22489106 CACAGCTCATGTGAGCAGT-CCCATTT
1 CACAGCTCGTGTGAGCA-TACCCATTC
*
22489132 CACAGCTCGTGTGAGCATACTCATTC
1 CACAGCTCGTGTGAGCATACCCATTC
*
22489158 CACAACTCGTGTGAGCATA
1 CACAGCTCGTGTGAGCATA
22489177 TATGTACAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATACCCATTC
Found at i:22490236 original size:15 final size:16
Alignment explanation
Indices: 22490216--22490245 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22490206 TGGTGCCTTG
22490216 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
22490231 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
22490246 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:22500452 original size:27 final size:27
Alignment explanation
Indices: 22500391--22500541 Score: 212
Period size: 27 Copynumber: 5.5 Consensus size: 27
22500381 TAAATTGTAC
* *
22500391 AGCACTAAGTGTGCGAGTTGGAATATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
22500419 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22500446 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
22500473 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
22500501 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22500528 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
22500542 AGACTTAATA
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 69 0.62
28 43 0.38
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Done.