Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 73 of 161
Found at i:22828396 original size:20 final size:21
Alignment explanation
Indices: 22828362--22828401 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
22828352 CCTACCCTCA
22828362 TTTTCATGATATTCTTTCATT
1 TTTTCATGATATTCTTTCATT
*
22828383 TTTTCATTAT-TTCTTTCAT
1 TTTTCATGATATTCTTTCAT
22828402 CTTCTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.17, C:0.15, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTCATGATATTCTTTCATT
Found at i:22840525 original size:12 final size:12
Alignment explanation
Indices: 22840508--22840551 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
22840498 CGTGTCAAAC
22840508 GCCCGTGTGCCA
1 GCCCGTGTGCCA
22840520 GCCCGTGTGCCA
1 GCCCGTGTGCCA
* *
22840532 GACCGTGTGCTA
1 GCCCGTGTGCCA
*
22840544 GGCCGTGT
1 GCCCGTGT
22840552 TACTCACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.09, C:0.34, G:0.36, T:0.20
Consensus pattern (12 bp):
GCCCGTGTGCCA
Found at i:22858991 original size:26 final size:26
Alignment explanation
Indices: 22858923--22858993 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
22858913 TGTTTCGACC
*
22858923 CACAGCTCGTGTGAGCAGGCCTATTTT
1 CACAGCTCGTGTGAGCA-TCCTATTTT
* *
22858950 CACAACTCGTGTGAGCATTCTGATTTT
1 CACAGCTCGTGTGAGCATCCT-ATTTT
22858977 -ACAGCTCGTGTGAGCAT
1 CACAGCTCGTGTGAGCAT
22858994 ACATGTATAG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 18 0.46
27 21 0.54
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATCCTATTTT
Found at i:22864728 original size:28 final size:28
Alignment explanation
Indices: 22864665--22864728 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
22864655 CAGTAACAGT
* * *
22864665 ACAGTGTGGGCCTTATCCCGATATAGTA
1 ACAGTGTGGGCCTTAGCCCAATATAATA
*
22864693 ACAATGTGGGCCTTAGCCCAATATAATA
1 ACAGTGTGGGCCTTAGCCCAATATAATA
*
22864721 ATAGTGTG
1 ACAGTGTG
22864729 ATAATGCAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATATAATA
Found at i:22864852 original size:26 final size:25
Alignment explanation
Indices: 22864823--22864876 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 25
22864813 AACACACCAA
22864823 TATCGCAGCAAAGCTGCCAGTAAAAG
1 TATCGCAGCAAAGCTGCCAG-AAAAG
* *
22864849 TATCGCAGCGAAGCTGCCAGAACAG
1 TATCGCAGCAAAGCTGCCAGAAAAG
22864874 TAT
1 TAT
22864877 ATGTGGCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (25 bp):
TATCGCAGCAAAGCTGCCAGAAAAG
Found at i:22867050 original size:85 final size:85
Alignment explanation
Indices: 22866957--22867463 Score: 1014
Period size: 85 Copynumber: 6.0 Consensus size: 85
22866947 TGCCCATGCC
22866957 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867022 ACATCTTGTCCACCCATACT
66 ACATCTTGTCCACCCATACT
22867042 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867107 ACATCTTGTCCACCCATACT
66 ACATCTTGTCCACCCATACT
22867127 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867192 ACATCTTGTCCACCCATACT
66 ACATCTTGTCCACCCATACT
22867212 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867277 ACATCTTGTCCACCCATACT
66 ACATCTTGTCCACCCATACT
22867297 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867362 ACATCTTGTCCACCCATACT
66 ACATCTTGTCCACCCATACT
22867382 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
22867447 ACATCTTGTCCACCCAT
66 ACATCTTGTCCACCCAT
22867464 GCTCATGGCC
Statistics
Matches: 422, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 422 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTGTCCACCCATACT
Found at i:22868768 original size:40 final size:40
Alignment explanation
Indices: 22868723--22869043 Score: 491
Period size: 40 Copynumber: 8.1 Consensus size: 40
22868713 CGAATACACG
* * * *
22868723 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
22868763 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
22868803 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
22868843 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
22868883 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
22868923 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
22868963 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
22869003 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
22869042 TC
1 TC
22869044 GTCGAGACCT
Statistics
Matches: 259, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 4 0.02
40 255 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:22869139 original size:38 final size:38
Alignment explanation
Indices: 22869097--22869171 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
22869087 AAATTTTAAT
*
22869097 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
22869135 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
22869172 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:22871615 original size:79 final size:81
Alignment explanation
Indices: 22871473--22871655 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
22871463 TCCTCGTTCA
* *
22871473 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
22871537 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* * **
22871553 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
22871615 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
22871632 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
22871656 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:22871655 original size:40 final size:40
Alignment explanation
Indices: 22871471--22871655 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
22871461 GCTCCTCGTT
* *
22871471 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22871511 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22871551 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
22871590 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
22871631 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22871656 CATCATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:22873189 original size:56 final size:56
Alignment explanation
Indices: 22873122--22873297 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
22873112 TATTAGTTTA
22873122 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
22873178 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
22873234 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGGTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
22873290 TTGCCCAT
1 TTGCCCAT
22873298 CATCCCTTGT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:22874622 original size:40 final size:40
Alignment explanation
Indices: 22874578--22874959 Score: 305
Period size: 40 Copynumber: 9.6 Consensus size: 40
22874568 CCAGCATGAT
* * * * *
22874578 TGCTCTTCGGGACCTAGCCCGGATATAACACCACCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
22874618 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
22874657 TGCTCTTCGGAACTTAGCCCGGATACATCCCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
22874697 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
22874737 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * *
22874777 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * ** * * *
22874818 TGC-CTTCGGGACTTAACCCGAATTTAGTAACTTGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * *
22874858 TGC-CTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAA
* **
22874897 TGC-CTTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTC-TTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
22874938 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
22874960 CATCATTCGA
Statistics
Matches: 284, Mismatches: 47, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
39 59 0.21
40 187 0.66
41 33 0.12
42 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:22874772 original size:80 final size:79
Alignment explanation
Indices: 22874578--22874798 Score: 316
Period size: 79 Copynumber: 2.8 Consensus size: 79
22874568 CCAGCATGAT
* * * * * * * ** *
22874578 TGCTCTTCGGGACCTAGCCCGGATATAACACCACCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
*
22874643 TATCACTAGCACAA
66 CATCACTAGCACAA
*
22874657 TGCTCTTCGGAACTTAGCCCGGATACATCCCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
22874722 CATCACTAGCACGAA
66 CATCACTAGCAC-AA
*
22874737 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
22874799 TTATAGTAAC
Statistics
Matches: 127, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 65 0.51
80 62 0.49
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACAA
Found at i:22874825 original size:80 final size:80
Alignment explanation
Indices: 22874578--22874959 Score: 339
Period size: 80 Copynumber: 4.8 Consensus size: 80
22874568 CCAGCATGAT
* * * * * * ** *
22874578 TGCTCTTCGGGACCTAGCCCGGATATAACACCACCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
22874643 TATCACTAGCAC-AA
66 TATAACTAGCACAAA
* *
22874657 TGCTCTTCGGAACTTAGCCCGGATACATCCCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* * *
22874722 CATCACTAGCACGAA
66 TATAACTAGCACAAA
* * *
22874737 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* *
22874802 TAGTAACTCGTACAAA
66 TA-TAACTAGCACAAA
* * * ** * * *
22874818 TGC-CTTCGGGACTTAACCCGAATTTAGTAACTTGCACCAATGC-CTTCGGG-CTTAGCCCGGA-
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
22874879 ATTAGTAACTCGCACAAA
65 A-TA-TAACTAGCACAAA
* * ** *
22874897 TGC-CTTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGG
1 TGCTC-TTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGG
22874959 A
63 A
22874960 CATCATTCGA
Statistics
Matches: 252, Mismatches: 43, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.00
79 94 0.37
80 117 0.46
81 40 0.16
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TATAACTAGCACAAA
Found at i:22877153 original size:79 final size:81
Alignment explanation
Indices: 22877011--22877193 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
22877001 TCCTCGTTCA
* *
22877011 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
22877075 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* * **
22877091 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
22877153 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
22877170 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
22877194 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:22877193 original size:40 final size:40
Alignment explanation
Indices: 22877009--22877193 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
22876999 GCTCCTCGTT
* *
22877009 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22877049 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22877089 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
22877128 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
22877169 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22877194 CATCATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:22878732 original size:56 final size:56
Alignment explanation
Indices: 22878660--22878835 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
22878650 TATTAGTTTA
*
22878660 TTGCTCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
22878716 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
22878772 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGGTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
22878828 TTGCCCAT
1 TTGCCCAT
22878836 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:22879768 original size:28 final size:26
Alignment explanation
Indices: 22879737--22879800 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
22879727 AATTACTTGA
**
22879737 ATACCCTTATGTATGCAAAATTACTGTT
1 ATACCCTTA-G-ATGCAAAATTACCATT
* *
22879765 ATACCCTTAGGTGTAAAATTACCATT
1 ATACCCTTAGATGCAAAATTACCATT
22879791 ATACCCTTAG
1 ATACCCTTAG
22879801 GGGTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (26 bp):
ATACCCTTAGATGCAAAATTACCATT
Found at i:22879946 original size:27 final size:26
Alignment explanation
Indices: 22879908--22879989 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
22879898 AAGCGTCCTA
* *
22879908 GTGGCTATGCCACAATTACCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
22879935 GTGGCTCTGCCACGATTATCTATATCTG
1 GTGGCTCTGCCAC-ATTATCT-GATCTG
* * *
22879963 GTGACTCTGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGATCTG
22879989 G
1 G
22879990 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.11
27 25 0.54
28 16 0.35
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:22879970 original size:28 final size:27
Alignment explanation
Indices: 22879930--22879982 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
22879920 CAATTACCTG
*
22879930 ATCTGGTGGCTCTGCCACGATTATCTAT
1 ATCTGGTGACTCTGCCAC-ATTATCTAT
*
22879958 ATCTGGTGACTCTGTCACATTATCT
1 ATCTGGTGACTCTGCCACATTATCT
22879983 GTTCTGGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (27 bp):
ATCTGGTGACTCTGCCACATTATCTAT
Found at i:22891724 original size:40 final size:40
Alignment explanation
Indices: 22891558--22891717 Score: 284
Period size: 40 Copynumber: 4.0 Consensus size: 40
22891548 GCCGGATATA
* *
22891558 GACTTAGCCCGGACATAGTCACTAGCACAAATGCCTTCGG
1 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
* *
22891598 GACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGG
1 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
22891638 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
1 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
22891678 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
1 GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
22891718 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
Found at i:22909782 original size:28 final size:28
Alignment explanation
Indices: 22909739--22910036 Score: 248
Period size: 28 Copynumber: 10.5 Consensus size: 28
22909729 TAAATTGTAC
22909739 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
22909767 AGCGCTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
22909795 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
22909823 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
22909851 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * * * *
22909878 AGCACTGAGTGTGC-AATCTCGGCACTAAG-
1 AGCACTAAGTGTGCGAGT-T-TG-ATTATGT
** ** * * * *
22909907 AGTGC-GGGTATAAAC-ATTTATGATCATGAGATT
1 AGCACTAAGTGT--GCGAGTT-TGATTAT--G--T
* *
22909940 GGCGCTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
22909968 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
22909996 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
22910023 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
22910037 AGACTTAATA
Statistics
Matches: 220, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.00
27 46 0.21
28 143 0.65
29 6 0.03
30 8 0.04
32 7 0.03
33 6 0.03
34 3 0.01
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:22910048 original size:27 final size:27
Alignment explanation
Indices: 22909944--22910050 Score: 108
Period size: 28 Copynumber: 3.9 Consensus size: 27
22909934 GAGATTGGCG
* * *
22909944 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGA-CTTGAATATATAGCA
* *
22909972 CTAAGTGTGCGAATTTGATTATATAGCA
1 CTAAGTGTGCG-ACTTGAATATATAGCA
* *
22910000 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGACTTGAATATATAGCA
*
22910027 CTGAGTGTGCAGACTT-AATATATA
1 CTAAGTGTGC-GACTTGAATATATA
22910051 CTTTTGAATC
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
27 31 0.43
28 40 0.56
29 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (27 bp):
CTAAGTGTGCGACTTGAATATATAGCA
Found at i:22910556 original size:205 final size:205
Alignment explanation
Indices: 22910204--22910614 Score: 804
Period size: 205 Copynumber: 2.0 Consensus size: 205
22910194 AATTATAATT
22910204 GAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGTAACG
1 GAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGTAACG
22910269 AAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAAAGCA
66 AAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAAAGCA
22910334 TGACTTGGTATGAGATTGAACCGATAGGTTTGAGGAACTATGGTATGGTTCGGTATGGATGGAGT
131 TGACTTGGTATGAGATTGAACCGATAGGTTTGAGGAACTATGGTATGGTTCGGTATGGATGGAGT
22910399 AACTAGCCTC
196 AACTAGCCTC
*
22910409 GAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGTAATG
1 GAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGTAACG
*
22910474 AAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAATGCA
66 AAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAAAGCA
22910539 TGACTTGGTATGAGATTGAACCGATAGGTTTGAGGAACTATGGTATGGTTCGGTATGGATGGAGT
131 TGACTTGGTATGAGATTGAACCGATAGGTTTGAGGAACTATGGTATGGTTCGGTATGGATGGAGT
22910604 AACTAGCCTC
196 AACTAGCCTC
22910614 G
1 G
22910615 TTCCATTTTG
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
205 204 1.00
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (205 bp):
GAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGTAACG
AAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAAAGCA
TGACTTGGTATGAGATTGAACCGATAGGTTTGAGGAACTATGGTATGGTTCGGTATGGATGGAGT
AACTAGCCTC
Found at i:22911416 original size:55 final size:55
Alignment explanation
Indices: 22911303--22911416 Score: 122
Period size: 55 Copynumber: 2.1 Consensus size: 55
22911293 CAGCCTTGGG
* *
22911303 CAACACTGACTTATCAACATGGCCATGGCACACACCCGTGCTGCCTGCCAGTGGA
1 CAACACTGACTTATCAACACGGCCATGGCACACACCCGTGCTGCCTACCAGTGGA
* * * ** * * *
22911358 CAACACTGTCTTTTTAACACGGCCATGGTGCACGCCCGTG-TGGCCTACCCGTGTA
1 CAACACTGACTTATCAACACGGCCATGGCACACACCCGTGCT-GCCTACCAGTGGA
22911413 CAAC
1 CAAC
22911417 TTTGAGCTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 1 0.02
55 47 0.98
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (55 bp):
CAACACTGACTTATCAACACGGCCATGGCACACACCCGTGCTGCCTACCAGTGGA
Found at i:22916603 original size:816 final size:816
Alignment explanation
Indices: 22915032--22917479 Score: 4019
Period size: 816 Copynumber: 3.0 Consensus size: 816
22915022 GATTTAGTCG
* * * * *
22915032 CTAGGCTC-ATATAATAAAACACATGCAATTTCTATCTTACCCAAGCCTAGCCGAACATTTTTCT
1 CTAGGCTCGA-ATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCT
* *
22915096 CTCTTATGGTAGCCCACAT-TATCCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCA
65 TTCTTATGGTAGCCCACATGT-TTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCA
22915160 AAATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATC
129 AAATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATC
* * * * *
22915225 TTTCATATCCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGGGTAAATTTTCAAACATG
194 TTTCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTT
22915290 AACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAA
259 AACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAA
22915355 AACATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAATTGAAGAAACCCTAGCTAT
324 AACATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAATTGAAGAAACCCTAGCTAT
22915420 GGTGTCTTCCAAATTTTTGCAGCTATGGGAAGAAGATGAGCATATTTTTGCTCCATTTTCCCTTT
389 GGTGTCTTCCAAATTTTTGCAGCTATGGGAAGAAGATGAGCATATTTTTGCTCCATTTTCCCTTT
22915485 TTATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCTTTAAAACTTCATCCATGC
454 TTATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCTTTAAAACTTCATCCATGC
22915550 AAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTTCTAATTCATA
519 AAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTTCTAATTCATA
22915615 ATCTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAGCCC
584 ATCTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAGCCC
22915680 TTAATTCCAATTGGACATCTTATACTTAGAATTTCTTCGTGAAATTTTTAACACATGCATATATT
649 TTAATTCCAATTGGACATCTTATACTTAGAATTTCTTCGTGAAATTTTTAACACATGCATATATT
22915745 CATATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATTTGTGGTCCTGAAAC
714 CATATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATTTGTGGTCCTGAAAC
22915810 CACTATTCCGACTAGGCCCTATTTCGGGATGTTACACC
779 CACTATTCCGACTAGGCCCTATTTCGGGATGTTACACC
22915848 CTAGGCTCGAATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCTT
1 CTAGGCTCGAATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCTT
22915913 TCTTATGGTAGCCCACATGTTTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCAAA
66 TCTTATGGTAGCCCACATGTTTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCAAA
22915978 ATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATCTT
131 ATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATCTT
22916043 TCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTTAA
196 TCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTTAA
22916108 CCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAAAA
261 CCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAAAA
22916173 CATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAATTGAAGAAACCCTAGCTATGG
326 CATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAATTGAAGAAACCCTAGCTATGG
22916238 TGTCTTCCAAATTTTTGCAGCTATGGGAAGAAGATGAGCATATTTTTGCTCCATTTTCCCTTTTT
391 TGTCTTCCAAATTTTTGCAGCTATGGGAAGAAGATGAGCATATTTTTGCTCCATTTTCCCTTTTT
22916303 ATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCTTTAAAACTTCATCCATGCAA
456 ATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCTTTAAAACTTCATCCATGCAA
22916368 GCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTTCTAATTCATAAT
521 GCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTTCTAATTCATAAT
22916433 CTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAGCCCTT
586 CTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAGCCCTT
22916498 AATTCCAATTGGACATCTTATACTTAGAATTTCTTCGTGAAATTTTTAACACATGCATATATTCA
651 AATTCCAATTGGACATCTTATACTTAGAATTTCTTCGTGAAATTTTTAACACATGCATATATTCA
22916563 TATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATTTGTGGTCCTGAAACCA
716 TATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATTTGTGGTCCTGAAACCA
22916628 CTATTCCGACTAGGCCCTATTTCGGGATGTTACACC
781 CTATTCCGACTAGGCCCTATTTCGGGATGTTACACC
22916664 CTAGGCTCGAATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCTT
1 CTAGGCTCGAATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCTT
22916729 TCTTATGGTAGCCCACATGTTTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCAAA
66 TCTTATGGTAGCCCACATGTTTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCAAA
* * * * *
22916794 ATAGTCCCTATAAGGGTTTTTCATGAAAATCAACTGGGAAAATATGTTTAATACACATTCATCTT
131 ATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATCTT
22916859 TCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTTAA
196 TCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTTAA
* * *
22916924 CCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGGGATTTCAAAAATACAAAAAG
261 CCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAAAA
*
22916989 CATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGCTTG-A-AAACCCTAGCTA-
326 CATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTT-GAAA-ATTGAAGAAACCCTAGCTAT
**** * * * ** * * *
22917051 GG-GAAACCCTTGAAGTTTCG-A-CTGGACAAGGAAG-AGAATGGGC-TGA-TTTTGGTTCATTT
389 GGTGTCTTCC--AAATTTTTGCAGCT--A-TGGGAAGAAG-ATGAGCAT-ATTTTTGCTCCA-TT
* * * * * ** ** *
22917110 TTCCCATTTTATTTCATTAAAATACCAAATGACCAAAATGCCCTTAAACTTTTTTCTTAAAA-TT
446 TTCCCTTTTTATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCT-TTAAAACTT
* *
22917174 CCATCCATGCAAGCCCATTTTTGTCCAAAAACTTAGAATTTGGGAAAATTGCTCTCCAAGACCTT
510 -CATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTT
* * * * * *
22917239 CTAATTCATAACCCAAAGCAATTTCATACAAATTGCTTCTAGAATTCAATTTTTGCAATTTATTC
574 CTAATTCATAATCTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTC
* * ** * *
22917304 AATTTAGTCCC-TAACTTCCAATTGAACACCTTACT-CAAAGAATTTCTTCATGAAA-CTTTAAC
639 AATTTAG-CCCTTAA-TTCCAATTGGACATCTTA-TACTTAGAATTTCTTCGTGAAATTTTTAAC
* * *
22917366 ACATGCATATACTT-ATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCAGATT
701 ACATGCATATA-TTCATATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATT
* ** * * **
22917430 TGTGGGCCAAAAACCACCATTCTGACTAGGCCCTATTTCAAGATGTTACA
765 TGTGGTCCTGAAACCACTATTCCGACTAGGCCCTATTTCGGGATGTTACA
22917480 TTCCAAACTA
Statistics
Matches: 1547, Mismatches: 67, Indels: 34
0.94 0.04 0.02
Matches are distributed among these distances:
814 5 0.00
815 3 0.00
816 1186 0.77
817 67 0.04
818 247 0.16
819 38 0.02
820 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (816 bp):
CTAGGCTCGAATAATGAAACACATGCACTTTCTATCTTACCCAAGCCTAGTCAAACACTTTTCTT
TCTTATGGTAGCCCACATGTTTCATTATTTTCTCATTTCTACCACACATTTACATCTTTTGCAAA
ATGGTCTCTATAAGGGTTTCTCATGAAAATCAACTAGGAAAAGATGTTTAATACACATTCATCTT
TCATATTCCTCCATAATCCATCAAAATACAAGCAAATCATGCATGGGTAAATTTTTAAACTTTAA
CCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGTTACCGGGATTTCAAAAATACAAAAAA
CATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAATTGAAGAAACCCTAGCTATGG
TGTCTTCCAAATTTTTGCAGCTATGGGAAGAAGATGAGCATATTTTTGCTCCATTTTCCCTTTTT
ATTCCATTAAAATGCCTAATGACCAAAATGCCTTTATGCCCTTCTTTAAAACTTCATCCATGCAA
GCCCATTTTTGTCCAAAAATTTAGAATTTGGGCAAATTGCTCTCCAAGACCTTCTAATTCATAAT
CTAAAGAAATTTCATACAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAGCCCTT
AATTCCAATTGGACATCTTATACTTAGAATTTCTTCGTGAAATTTTTAACACATGCATATATTCA
TATTATAGGCCTCATAATAACCATAAAATAAATATTTTGATGTCGGATTTGTGGTCCTGAAACCA
CTATTCCGACTAGGCCCTATTTCGGGATGTTACACC
Found at i:22918309 original size:106 final size:106
Alignment explanation
Indices: 22918124--22918338 Score: 360
Period size: 106 Copynumber: 2.0 Consensus size: 106
22918114 GTCAAAATGA
22918124 GTAAATTTTCTTTCCTTGGAAACAATATTTATGTGTTAAATTATCCAGGGTCAACTAAATCTTAT
1 GTAAATTTTCTTTCCTTGGAAACAATATTTATGTGTTAAATTATCCAGGGTCAACTAAATCTTAT
* * * * *
22918189 TTTTGCACTAAAGTCGTGGAGGGTTTAAGTCTTGAGGTTGT
66 ATCTACACTAAAGTCGTCGAGGGTTTAAGTCTTAAGGTTGT
*
22918230 GTAAATTTTCTTTCCTTGGAAACAATATTTATGTGTTAAATTAT-CTGAGGTCAACTAAATCTTA
1 GTAAATTTTCTTTCCTTGGAAACAATATTTATGTGTTAAATTATCCAG-GGTCAACTAAATCTTA
22918294 TATCTACACTAAAGTCGTCGAGGGTTTAAGTCTTAAGGTTGT
65 TATCTACACTAAAGTCGTCGAGGGTTTAAGTCTTAAGGTTGT
22918336 GTA
1 GTA
22918339 TTTTGAAACA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
105 2 0.02
106 100 0.98
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.40
Consensus pattern (106 bp):
GTAAATTTTCTTTCCTTGGAAACAATATTTATGTGTTAAATTATCCAGGGTCAACTAAATCTTAT
ATCTACACTAAAGTCGTCGAGGGTTTAAGTCTTAAGGTTGT
Found at i:22918526 original size:34 final size:34
Alignment explanation
Indices: 22918488--22918553 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
22918478 GCTATTATGG
*
22918488 GGTTAGATTGATTTATGAGACATAATATTGTTGT
1 GGTTAGATTGATTTACGAGACATAATATTGTTGT
* *
22918522 GGTTAGATTGATTTACGAGACGTAATGTTGTT
1 GGTTAGATTGATTTACGAGACATAATATTGTT
22918554 TTGGATTATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.26, T:0.42
Consensus pattern (34 bp):
GGTTAGATTGATTTACGAGACATAATATTGTTGT
Found at i:22918932 original size:25 final size:25
Alignment explanation
Indices: 22918898--22918949 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
22918888 TCTTTAGCAT
*
22918898 ATATGTTGGCATTTTTAGTTCAATA
1 ATATGTTGGCATTTTCAGTTCAATA
*
22918923 ATATTTTGGCATTTTCAGTTCAATA
1 ATATGTTGGCATTTTCAGTTCAATA
22918948 AT
1 AT
22918950 TTACATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (25 bp):
ATATGTTGGCATTTTCAGTTCAATA
Found at i:22919997 original size:92 final size:92
Alignment explanation
Indices: 22919840--22920151 Score: 624
Period size: 92 Copynumber: 3.4 Consensus size: 92
22919830 ATCCCAGTTT
22919840 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
1 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
22919905 CTAGATTGAATATAGAGTAAAAGTTGA
66 CTAGATTGAATATAGAGTAAAAGTTGA
22919932 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
1 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
22919997 CTAGATTGAATATAGAGTAAAAGTTGA
66 CTAGATTGAATATAGAGTAAAAGTTGA
22920024 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
1 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
22920089 CTAGATTGAATATAGAGTAAAAGTTGA
66 CTAGATTGAATATAGAGTAAAAGTTGA
22920116 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAG
1 ATATAAGATTACAGAAAAATAAAGGGATTAAATTAG
22920152 AAAATAAACC
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 220 1.00
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.29
Consensus pattern (92 bp):
ATATAAGATTACAGAAAAATAAAGGGATTAAATTAGCTTAAATTATGGATAATTAGGTATAAGGA
CTAGATTGAATATAGAGTAAAAGTTGA
Found at i:22920260 original size:19 final size:19
Alignment explanation
Indices: 22920238--22920281 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
22920228 AATAATGTAC
*
22920238 ATATGTATA-AAATAC-TA
1 ATATATATATAAATACTTA
22920255 ATATATATATAAATACTTA
1 ATATATATATAAATACTTA
22920274 ATA-ATATA
1 ATATATATA
22920282 ATATATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 8 0.33
18 11 0.46
19 5 0.21
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (19 bp):
ATATATATATAAATACTTA
Found at i:22920270 original size:18 final size:18
Alignment explanation
Indices: 22920238--22920295 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
22920228 AATAATGTAC
*
22920238 ATATGTATAAAATAC-TA
1 ATATATATAAAATACTTA
22920255 ATATATATATAAATACTTA
1 ATATATATA-AAATACTTA
*
22920274 ATA-ATATAATATA-TTA
1 ATATATATAAAATACTTA
*
22920290 TTATAT
1 ATATAT
22920296 TATTATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 5 0.14
17 14 0.40
18 11 0.31
19 5 0.14
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATATATAAAATACTTA
Found at i:22926838 original size:15 final size:14
Alignment explanation
Indices: 22926820--22926915 Score: 51
Period size: 15 Copynumber: 6.6 Consensus size: 14
22926810 TGTACATATG
22926820 TATAAAATACTAATA
1 TATAAAATA-TAATA
22926835 TAT-AAATACTTAATA
1 TATAAAATA--TAATA
22926850 CT-TAATAATAT-A-A
1 -TATAA-AATATAATA
22926863 TAT--AATATAATA
1 TATAAAATATAATA
*
22926875 TGATATAATATAATA
1 T-ATAAAATATAATA
*
22926890 TAATATAATATAATAA
1 T-ATAAAATATAAT-A
22926906 TATTAAAATA
1 TA-TAAAATA
22926916 ATTAAAGTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 23
0.72 0.03 0.25
Matches are distributed among these distances:
10 5 0.08
11 1 0.02
12 3 0.05
13 4 0.06
14 6 0.09
15 33 0.50
16 10 0.15
17 4 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (14 bp):
TATAAAATATAATA
Found at i:22926864 original size:5 final size:5
Alignment explanation
Indices: 22926854--22926904 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
22926844 TTAATACTTA
*
22926854 ATAAT ATAAT ATAAT ATAAT ATGAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
22926904 A
1 A
22926905 ATATTAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:22929583 original size:6 final size:6
Alignment explanation
Indices: 22929563--22929676 Score: 74
Period size: 6 Copynumber: 18.3 Consensus size: 6
22929553 AAGAAACATT
* *
22929563 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
22929612 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAAGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA
*
22929662 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
22929677 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
5 6 0.07
6 60 0.71
7 15 0.18
8 3 0.04
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:22929607 original size:31 final size:31
Alignment explanation
Indices: 22929572--22929676 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
22929562 TATCAGAACT
*
22929572 AGAATCAAAATCAGAATCAGAATCAGGT---
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
22929600 -G-A-CAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
22929628 AGAATCAAAATCAGAATCAGTATCAAGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
22929659 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
22929677 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
25 21 0.32
26 1 0.02
27 1 0.02
29 1 0.02
30 1 0.02
31 30 0.45
32 11 0.17
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:22929611 original size:25 final size:25
Alignment explanation
Indices: 22929580--22929647 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
22929570 CTAGAATCAA
*
22929580 AATCAGAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
22929605 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
22929630 AATCAAAATCAGAATCAG
1 AATCAGAATCAGAATCAG
22929648 TATCAAGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:22929663 original size:19 final size:19
Alignment explanation
Indices: 22929608--22929665 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
22929598 GTGACAGAAT
*
22929608 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAAGTAA
22929627 CAGAATCA--A--AA-T--
1 CAGAATCAGTATCAAGTAA
22929639 CAGAATCAGTATCAAGTAA
1 CAGAATCAGTATCAAGTAA
22929658 CAGAATCA
1 CAGAATCA
22929666 AAAATCAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
12 8 0.26
14 2 0.06
15 1 0.03
16 2 0.06
17 2 0.06
19 16 0.52
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAAGTAA
Found at i:22929855 original size:27 final size:26
Alignment explanation
Indices: 22929813--22929907 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
22929803 GCTCAGTTAT
* *
22929813 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
22929840 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
22929866 CAGATAGTTGTGGCATAGCCACCAAAAA
1 CAGATA-TTGTGGCAGAGCCACC-AGAA
*
22929894 CAGATAATGTGGCA
1 CAGATATTGTGGCA
22929908 AACCACTTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 7 0.11
27 45 0.74
28 9 0.15
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:22930100 original size:22 final size:23
Alignment explanation
Indices: 22930072--22930133 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
22930062 GCAAATACGT
*
22930072 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
22930094 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
22930116 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
22930134 CAGAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:22930620 original size:27 final size:27
Alignment explanation
Indices: 22930581--22930811 Score: 318
Period size: 27 Copynumber: 8.6 Consensus size: 27
22930571 TACCCCAGAA
* *
22930581 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
22930608 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
22930635 GGGATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
22930662 GGTATTGCGATAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
22930689 GGTGTTTCGGTAATTCTACCTTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
22930716 GATATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
22930743 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
22930770 GGTATTTCGGTAATTCTAACCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
22930797 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
22930812 TTTTAAATCG
Statistics
Matches: 175, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 175 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:22930890 original size:27 final size:27
Alignment explanation
Indices: 22930860--22930924 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
22930850 GGTACTATGG
22930860 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
22930887 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
22930914 TAATTTCACAA
1 TAATTTTACAA
22930925 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:22931015 original size:108 final size:108
Alignment explanation
Indices: 22930902--22931385 Score: 815
Period size: 108 Copynumber: 4.5 Consensus size: 108
22930892 TTACAGGTCG
* * ** ** * *
22930902 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
** * * * * *
22930967 ATAATTTTACAAACCAGGGATATTTTGGTAATTTAATAAACAA
66 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
*
22931010 AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
22931075 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
66 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
22931118 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
22931183 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
66 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
22931226 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
22931291 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
66 GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
*
22931334 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAC
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAAC
22931386 TAAAGTATTC
Statistics
Matches: 358, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 358 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (108 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
GGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
Found at i:22931385 original size:27 final size:27
Alignment explanation
Indices: 22930903--22931378 Score: 583
Period size: 27 Copynumber: 17.6 Consensus size: 27
22930893 TACAGGTCGA
** * **
22930903 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22930930 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22930957 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
22930984 GGATATTTTGGTAATTTAATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22931011 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
22931038 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22931065 GGGTATTTTGGGAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
22931092 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22931119 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
22931146 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22931173 GGGTATTTTGGGAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
22931200 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22931227 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
22931254 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22931281 GGGTATTTTGGGAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
22931308 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22931335 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
22931362 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
22931379 GGTAAACTAA
Statistics
Matches: 374, Mismatches: 75, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 374 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:22931385 original size:54 final size:54
Alignment explanation
Indices: 22930902--22931378 Score: 704
Period size: 54 Copynumber: 8.8 Consensus size: 54
22930892 TTACAGGTCG
* * ** * *
22930902 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
22930956 GGGGTATTTT-GATAATTTTACAAACCAGGGATATTTTGGTAATTTAATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
22931010 AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
22931064 AGGGTATTTTGGGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
22931118 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
22931172 AGGGTATTTTGGGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
22931226 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
22931280 AGGGTATTTTGGGAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
22931334 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
22931379 GGTAAACTAA
Statistics
Matches: 376, Mismatches: 45, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.00
54 374 0.99
55 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:22938421 original size:15 final size:15
Alignment explanation
Indices: 22938397--22938461 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
22938387 GTATCTTGGG
*
22938397 TTTCTATATTCTGGA
1 TTTCTTTATTCTGGA
*
22938412 TTTCTTTATTCTAGA
1 TTTCTTTATTCTGGA
*
22938427 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
22938442 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
22938456 TTTCTT
1 TTTCTT
22938462 GTTATATTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
14 10 0.24
15 30 0.71
16 2 0.05
ACGTcount: A:0.14, C:0.15, G:0.11, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:22940381 original size:76 final size:76
Alignment explanation
Indices: 22940290--22940440 Score: 293
Period size: 76 Copynumber: 2.0 Consensus size: 76
22940280 TTAGAGTGAA
22940290 AATTTGATGTTTCCATAGAAGGGAAAAATGATCAGCATGTCATAAAATATAAGAAAATAGGCTGA
1 AATTTGATGTTTCCATAGAAGGGAAAAATGATCAGCATGTCATAAAATATAAGAAAATAGGCTGA
22940355 AGTTTAATTTG
66 AGTTTAATTTG
*
22940366 AATTTTATGTTTCCATAGAAGGGAAAAATGATCAGCATGTCATAAAATATAAGAAAATAGGCTGA
1 AATTTGATGTTTCCATAGAAGGGAAAAATGATCAGCATGTCATAAAATATAAGAAAATAGGCTGA
22940431 AGTTTAATTT
66 AGTTTAATTT
22940441 ACGAGCTTTG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (76 bp):
AATTTGATGTTTCCATAGAAGGGAAAAATGATCAGCATGTCATAAAATATAAGAAAATAGGCTGA
AGTTTAATTTG
Found at i:22940978 original size:46 final size:46
Alignment explanation
Indices: 22940928--22941100 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
22940918 TGGTTGAGCA
22940928 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22940974 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22941019 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
22941067 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22941101 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22941084 original size:93 final size:93
Alignment explanation
Indices: 22940925--22941095 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
22940915 GGATGGTTGA
* *
22940925 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22940990 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
22941018 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22941083 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22941096 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:22943286 original size:21 final size:21
Alignment explanation
Indices: 22943262--22943333 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
22943252 GTCATAGGGT
22943262 CACACAGGCGTGTCCCTTGAC
1 CACACAGGCGTGTCCCTTGAC
* *
22943283 CACACGGGCATGTCCCTTGAC
1 CACACAGGCGTGTCCCTTGAC
* **
22943304 TACATGGGCGTGTCCCTTGAC
1 CACACAGGCGTGTCCCTTGAC
22943325 CACACAGGC
1 CACACAGGC
22943334 ATGTGTGCCC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.19
Consensus pattern (21 bp):
CACACAGGCGTGTCCCTTGAC
Found at i:22950151 original size:16 final size:16
Alignment explanation
Indices: 22950129--22950184 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
22950119 CGTTTGGTTT
*
22950129 GCTGTAATAGAATAAA
1 GCTGTAATAAAATAAA
* *
22950145 ACTGTAATAAAATATA
1 GCTGTAATAAAATAAA
* *
22950161 GTTGTAATATAATAAA
1 GCTGTAATAAAATAAA
22950177 GCTGTAAT
1 GCTGTAAT
22950185 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.32
Consensus pattern (16 bp):
GCTGTAATAAAATAAA
Found at i:22950472 original size:16 final size:16
Alignment explanation
Indices: 22950453--22950499 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
22950443 TAAAAATATA
22950453 TAATTTAATATATTTT
1 TAATTTAATATATTTT
*
22950469 TAATATAAT-TATTTT
1 TAATTTAATATATTTT
*
22950484 TATATTAAATTATATT
1 TA-ATTTAA-TATATT
22950500 AAAATATTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 8 0.32
16 12 0.48
17 1 0.04
18 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TAATTTAATATATTTT
Found at i:22950483 original size:15 final size:16
Alignment explanation
Indices: 22950453--22950485 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22950443 TAAAAATATA
*
22950453 TAATTTAATATATTTT
1 TAATATAATATATTTT
22950469 TAATATAAT-TATTTT
1 TAATATAATATATTTT
22950484 TA
1 TA
22950486 TATTAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATATAATATATTTT
Found at i:22965884 original size:49 final size:49
Alignment explanation
Indices: 22965805--22966048 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
22965795 GCTATCGTGA
*
22965805 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
22965854 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * **
22965905 GATCACGTGTGTAGTACTAAGTG-AGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
22965953 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * *
22966003 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22966049 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.01
49 104 0.63
50 38 0.23
51 22 0.13
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:22965980 original size:100 final size:99
Alignment explanation
Indices: 22965807--22966048 Score: 328
Period size: 100 Copynumber: 2.4 Consensus size: 99
22965797 TATCGTGAGG
*
22965807 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* * *
22965872 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TTGGA
* ** *
22965907 TCACGTGTGTAGTACTAAGTG-AGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
22965971 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGT
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGGA
* *
22966006 TGCA--TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22966049 GCTTTGGCTA
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
98 16 0.13
99 44 0.35
100 65 0.52
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGGA
Found at i:22968106 original size:43 final size:45
Alignment explanation
Indices: 22968055--22968180 Score: 139
Period size: 51 Copynumber: 2.7 Consensus size: 45
22968045 GTGGCATCTG
* *
22968055 AGCTCGTTGAGAGGTCCGAGTTCATTATGGAT-GTG-AGCATCCA
1 AGCTCGTTGAGAGGTCCGAGTTCATTATGGATCATGTAACATCCA
* *
22968098 AGCTCGTTGAGAGGCCCGAGTTCATAATGGATGCGACTCATGTAACATCCG
1 AGCTCGTTGAGAGGTCCGAGTTCAT--T--ATG-GA-TCATGTAACATCCA
*
22968149 AGCTCATTGAGAGGTCCGAGTTCATTATGGAT
1 AGCTCGTTGAGAGGTCCGAGTTCATTATGGAT
22968181 TGTTACATGT
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
43 24 0.35
45 2 0.03
46 2 0.03
47 6 0.09
48 2 0.03
49 2 0.03
50 2 0.03
51 29 0.42
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
AGCTCGTTGAGAGGTCCGAGTTCATTATGGATCATGTAACATCCA
Found at i:22975106 original size:50 final size:50
Alignment explanation
Indices: 22975047--22975146 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
22975037 AAGCTTATCC
*
22975047 TCGAGTACCTGGATTACTCTTTCCAACTGACCATCTGTTTGTGGATGAAA
1 TCGAGTACCTGGATTACTCTTTCCAACTCACCATCTGTTTGTGGATGAAA
* *
22975097 TCGAGTACCTGGATTCCTCTTTCCCACTCACCATCTGTTTGTGGATGAAA
1 TCGAGTACCTGGATTACTCTTTCCAACTCACCATCTGTTTGTGGATGAAA
22975147 CGTGGTACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (50 bp):
TCGAGTACCTGGATTACTCTTTCCAACTCACCATCTGTTTGTGGATGAAA
Found at i:22986019 original size:27 final size:27
Alignment explanation
Indices: 22985988--22986165 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22985978 TAAATTGTAC
22985988 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22986015 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22986041 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22986069 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22986097 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22986124 AGCACTAAGTGTGCGACTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22986151 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22986166 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22986102 original size:82 final size:81
Alignment explanation
Indices: 22985989--22986144 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22985979 AAATTGTACA
* *
22985989 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22986053 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22986070 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22986135 TGCGACTTGA
65 TGCGAATTGA
22986145 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22986156 original size:82 final size:81
Alignment explanation
Indices: 22985985--22986165 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22985975 GATTAAATTG
* *
22985985 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22986050 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22986066 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22986130 AAGTGTGCGACTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22986148 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22986166 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22990873 original size:29 final size:29
Alignment explanation
Indices: 22990831--22990888 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22990821 CCTACAAAAG
22990831 AAGGGATGTAAAGGGAGATGGAAGTCTAC
1 AAGGGATGTAAAGGGAGATGGAAGTCTAC
22990860 AAGGGATGTAAAGGGAGATGGAAGTCTAC
1 AAGGGATGTAAAGGGAGATGGAAGTCTAC
22990889 CTACAATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.38, T:0.17
Consensus pattern (29 bp):
AAGGGATGTAAAGGGAGATGGAAGTCTAC
Found at i:23005854 original size:37 final size:36
Alignment explanation
Indices: 23005750--23005856 Score: 115
Period size: 37 Copynumber: 2.9 Consensus size: 36
23005740 ACTATTAATG
* *
23005750 AAAGCATGATTAAGAATGCCATTAAGATTGTTAAACCA
1 AAAGCATGA-TAAGCATGCCATTAA-ATTGTTAAACAA
* * * *
23005788 GAAGCATGAAAAACATGCCACTGAAATTGTTAAACAA
1 AAAGCATGATAAGCATGCCA-TTAAATTGTTAAACAA
*
23005825 AAATCATGATAAGCATGCCATTAATATTGTTA
1 AAAGCATGATAAGCATGCCATTAA-ATTGTTA
23005857 CTGCTATCGA
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
36 3 0.05
37 42 0.75
38 11 0.20
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (36 bp):
AAAGCATGATAAGCATGCCATTAAATTGTTAAACAA
Found at i:23008216 original size:284 final size:284
Alignment explanation
Indices: 23007699--23008266 Score: 1127
Period size: 284 Copynumber: 2.0 Consensus size: 284
23007689 AAAGGGTACT
*
23007699 CAATTAGCAACAAGGGTCAGCCCTATACATGCCATTTTCAAAATTGAACTAAAAGAGTACCAAAA
1 CAATTAACAACAAGGGTCAGCCCTATACATGCCATTTTCAAAATTGAACTAAAAGAGTACCAAAA
23007764 ATTGGCTTAGATAGTGTGGATGACTTTGACTTTGACACTCCCGAGTCCGATAGCTGACGAACAAA
66 ATTGGCTTAGATAGTGTGGATGACTTTGACTTTGACACTCCCGAGTCCGATAGCTGACGAACAAA
23007829 ATCTATAAAACAGAGAATCAAAGTAACAGAGTAAGCATTTTAATGCTTAGTAAGTTCAAGTAATG
131 ATCTATAAAACAGAGAATCAAAGTAACAGAGTAAGCATTTTAATGCTTAGTAAGTTCAAGTAATG
23007894 AAATTATTTACGACTAAAGTATAGCGTTCATATGACTAAATGAATAGTTGCATATACGCATATTC
196 AAATTATTTACGACTAAAGTATAGCGTTCATATGACTAAATGAATAGTTGCATATACGCATATTC
23007959 CCAAAATCATACTTACTTCACACC
261 CCAAAATCATACTTACTTCACACC
23007983 CAATTAACAACAAGGGTCAGCCCTATACATGCCATTTTCAAAATTGAACTAAAAGAGTACCAAAA
1 CAATTAACAACAAGGGTCAGCCCTATACATGCCATTTTCAAAATTGAACTAAAAGAGTACCAAAA
23008048 ATTGGCTTAGATAGTGTGGATGACTTTGACTTTGACACTCCCGAGTCCGATAGCTGACGAACAAA
66 ATTGGCTTAGATAGTGTGGATGACTTTGACTTTGACACTCCCGAGTCCGATAGCTGACGAACAAA
23008113 ATCTATAAAACAGAGAATCAAAGTAACAGAGTAAGCATTTTAATGCTTAGTAAGTTCAAGTAATG
131 ATCTATAAAACAGAGAATCAAAGTAACAGAGTAAGCATTTTAATGCTTAGTAAGTTCAAGTAATG
23008178 AAATTATTTACGACTAAAGTATAGCGTTCATATGACTAAATGAATAGTTGCATATACGCATATTC
196 AAATTATTTACGACTAAAGTATAGCGTTCATATGACTAAATGAATAGTTGCATATACGCATATTC
23008243 CCAAAATCATACTTACTTCACACC
261 CCAAAATCATACTTACTTCACACC
23008267 TCAACCAGTA
Statistics
Matches: 283, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
284 283 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (284 bp):
CAATTAACAACAAGGGTCAGCCCTATACATGCCATTTTCAAAATTGAACTAAAAGAGTACCAAAA
ATTGGCTTAGATAGTGTGGATGACTTTGACTTTGACACTCCCGAGTCCGATAGCTGACGAACAAA
ATCTATAAAACAGAGAATCAAAGTAACAGAGTAAGCATTTTAATGCTTAGTAAGTTCAAGTAATG
AAATTATTTACGACTAAAGTATAGCGTTCATATGACTAAATGAATAGTTGCATATACGCATATTC
CCAAAATCATACTTACTTCACACC
Found at i:23008533 original size:40 final size:40
Alignment explanation
Indices: 23008457--23008640 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
23008447 CAAACCCAAG
* * *
23008457 TGCCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
* * *
23008496 TGCCTTCTGGTCTTAGCTCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* *
23008536 AGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
23008576 TGCCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
23008616 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
23008641 CATTCGAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.88
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:23016720 original size:40 final size:40
Alignment explanation
Indices: 23016644--23016907 Score: 424
Period size: 40 Copynumber: 6.6 Consensus size: 40
23016634 CAAACCCAAG
* *
23016644 TGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
23016683 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
23016723 AGCCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
23016763 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
23016803 TGCCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
**
23016843 TGCCTTCGGGACTTAGCCCGGATATTTTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
23016883 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
23016908 CATTCGAATA
Statistics
Matches: 209, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 14 0.07
40 192 0.92
41 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:23017975 original size:28 final size:29
Alignment explanation
Indices: 23017910--23018008 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
23017900 CATGAGATTG
* *
23017910 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
23017939 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
23017967 GCACTAAGTGTGCGA-GTTCGATTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
23017995 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23018009 GGCTTATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
27 4 0.06
28 43 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:23032814 original size:105 final size:105
Alignment explanation
Indices: 23032632--23032824 Score: 386
Period size: 105 Copynumber: 1.8 Consensus size: 105
23032622 TTCGAGACTA
23032632 TCTTTCTAATTAAAACCTCTATTGTCACATTAACTCGATCTATGGATTCCCTTATTAGAGTTGAC
1 TCTTTCTAATTAAAACCTCTATTGTCACATTAACTCGATCTATGGATTCCCTTATTAGAGTTGAC
23032697 TCTAATCTAGCAGATTTATGTTGGTTGATTAATTGAAATC
66 TCTAATCTAGCAGATTTATGTTGGTTGATTAATTGAAATC
23032737 TCTTTCTAATTAAAACCTCTATTGTCACATTAACTCGATCTATGGATTCCCTTATTAGAGTTGAC
1 TCTTTCTAATTAAAACCTCTATTGTCACATTAACTCGATCTATGGATTCCCTTATTAGAGTTGAC
23032802 TCTAATCTAGCAGATTTATGTTG
66 TCTAATCTAGCAGATTTATGTTG
23032825 TCCTATCTCC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 88 1.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (105 bp):
TCTTTCTAATTAAAACCTCTATTGTCACATTAACTCGATCTATGGATTCCCTTATTAGAGTTGAC
TCTAATCTAGCAGATTTATGTTGGTTGATTAATTGAAATC
Found at i:23033188 original size:74 final size:74
Alignment explanation
Indices: 23033067--23033215 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
23033057 TCATAATAAT
23033067 AGTGGAAAACATGTCAAAATTTGAAAAACAACAAAACATAAAGAGCCCCAATAACTTTTAGGAAA
1 AGTGGAAAACATGTCAAAATTTGAAAAACAACAAAACATAAAGAGCCCCAATAACTTTTAGGAAA
23033132 TTGGATGGA
66 TTGGATGGA
23033141 AGTGGAAAACATGTCAAAATTTGAAAAACAACAAAACATAAAGAGCCCCAATAACTTTTAGGAAA
1 AGTGGAAAACATGTCAAAATTTGAAAAACAACAAAACATAAAGAGCCCCAATAACTTTTAGGAAA
23033206 TTGGATGGA
66 TTGGATGGA
23033215 A
1 A
23033216 ATCTTCAGTC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.20
Consensus pattern (74 bp):
AGTGGAAAACATGTCAAAATTTGAAAAACAACAAAACATAAAGAGCCCCAATAACTTTTAGGAAA
TTGGATGGA
Found at i:23036373 original size:3 final size:3
Alignment explanation
Indices: 23036365--23036460 Score: 77
Period size: 3 Copynumber: 31.0 Consensus size: 3
23036355 GTAATAAAGG
* * * *
23036365 AAT AAT AAT CAT AAT TAT AAT AAT AGT AAT AAT AAT AAT ACTT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * * *
23036411 AAC AA- ATAT AAT GAAT AAT AAC AGT AAT AAT AAT AAT AAAG AAT AAT
1 AAT AAT A-AT AAT -AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
23036458 AAT
1 AAT
23036461 TAAAAATAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
2 1 0.01
3 64 0.88
4 8 0.11
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23036456 original size:44 final size:43
Alignment explanation
Indices: 23036351--23036456 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 43
23036341 CAACCAACAA
* * * *
23036351 AATAGTAATAAAGGAATAATAATCATAATTATAATAATAGTAAT
1 AATAATAATAAA-GAATAAAAATCATAATAATAATAACAGTAAT
***
23036395 AATAATAATACTTAATAACAAAT-ATAATGAATAATAACAGTAAT
1 AATAATAATAAAGAATAA-AAATCATAAT-AATAATAACAGTAAT
23036439 AATAATAATAAAGAATAA
1 AATAATAATAAAGAATAA
23036457 TAATTAAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
43 10 0.20
44 40 0.80
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (43 bp):
AATAATAATAAAGAATAAAAATCATAATAATAATAACAGTAAT
Found at i:23036460 original size:38 final size:38
Alignment explanation
Indices: 23036397--23036469 Score: 87
Period size: 38 Copynumber: 1.9 Consensus size: 38
23036387 ATAGTAATAA
* *
23036397 TAATAATACTTAATAACAAATATAATGAATAATAACAG
1 TAATAATACATAATAACAAATATAATGAAAAATAACAG
*
23036435 TAATAATA-ATAATAA-AGAATAATAATTAAAAATAA
1 TAATAATACATAATAACA-AAT-ATAATGAAAAATAA
23036470 ATAAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 1 0.03
37 9 0.30
38 20 0.67
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (38 bp):
TAATAATACATAATAACAAATATAATGAAAAATAACAG
Found at i:23036803 original size:19 final size:19
Alignment explanation
Indices: 23036771--23036817 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
23036761 GGGAGCAAGG
23036771 GAAAGAAATA-GGAAAGAAA
1 GAAAGAAA-AGGGAAAGAAA
* *
23036790 GAAAGAAAAGGGAAGGGAA
1 GAAAGAAAAGGGAAAGAAA
23036809 GAAA-AAAAG
1 GAAAGAAAAG
23036818 ATGAAAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (19 bp):
GAAAGAAAAGGGAAAGAAA
Found at i:23044446 original size:26 final size:26
Alignment explanation
Indices: 23044396--23044446 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23044386 TCATTAGTTT
* *
23044396 AATGTTATAATTATATTCTGTTATGA
1 AATGTTATAATTATATTATGCTATGA
23044422 AATGTTATAATTGA-ATTATGCTATG
1 AATGTTATAATT-ATATTATGCTATG
23044447 GTCGAATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.47
Consensus pattern (26 bp):
AATGTTATAATTATATTATGCTATGA
Found at i:23054027 original size:63 final size:63
Alignment explanation
Indices: 23053928--23054721 Score: 1588
Period size: 63 Copynumber: 12.6 Consensus size: 63
23053918 TATGTAAATA
23053928 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23053991 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054054 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054117 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054180 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054243 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054306 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054369 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054432 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054495 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054558 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054621 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
23054684 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTT
1 TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTT
23054722 TATATTATAT
Statistics
Matches: 731, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 731 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (63 bp):
TGCGTATGGTTGATTTTATTTCATGTGCAAGTTGCTTTATCTTGGTCTTGAGATAAAGCAACT
Found at i:23064648 original size:31 final size:31
Alignment explanation
Indices: 23064612--23064671 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
23064602 ATGTTTATGT
23064612 TGTTATAGGCCTCGGTAAAATGCTTGATTGC
1 TGTTATAGGCCTCGGTAAAATGCTTGATTGC
23064643 TGTTATAGGCCTCGGTAAAATGCTTGATT
1 TGTTATAGGCCTCGGTAAAATGCTTGATT
23064672 AAGTGAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (31 bp):
TGTTATAGGCCTCGGTAAAATGCTTGATTGC
Found at i:23072456 original size:27 final size:27
Alignment explanation
Indices: 23072426--23072630 Score: 207
Period size: 27 Copynumber: 7.6 Consensus size: 27
23072416 TTAGTTTACC
23072426 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
23072453 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
23072480 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
23072507 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
23072534 AAATTACCAAAATATCAC-TGATTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTGTA
*** * *
23072561 AAATTATTGAAATACCC-CGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * **
23072587 AAATTACTAAAATACCTTTGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
23072614 CAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
23072631 CCAATTTACA
Statistics
Matches: 151, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.16
27 125 0.83
28 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:23072699 original size:27 final size:27
Alignment explanation
Indices: 23072669--23072810 Score: 194
Period size: 27 Copynumber: 5.3 Consensus size: 27
23072659 CGATTTACAA
* *
23072669 AATTACCGAAACACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
23072696 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
23072723 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
23072750 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
23072777 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
23072804 AATTACC
1 AATTACC
23072811 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:23073530 original size:31 final size:32
Alignment explanation
Indices: 23073492--23073554 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
23073482 CCTCGCTGTA
* *
23073492 TTCTGGTGGCTTCGCCAC-ATATATATATCTG
1 TTCTGGTGGCCTAGCCACAATATATATATCTG
*
23073523 TTCTGGTGGCCTAGCCACAATATCTATATCTG
1 TTCTGGTGGCCTAGCCACAATATATATATCTG
23073555 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (32 bp):
TTCTGGTGGCCTAGCCACAATATATATATCTG
Found at i:23073755 original size:6 final size:6
Alignment explanation
Indices: 23073744--23073818 Score: 57
Period size: 6 Copynumber: 12.3 Consensus size: 6
23073734 CTATCACTTA
* *
23073744 ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCT- ATTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG A-TTCTG ATTCTG
* *
23073793 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
23073819 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
5 2 0.04
6 47 0.87
7 4 0.07
8 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:23073757 original size:37 final size:37
Alignment explanation
Indices: 23073716--23073810 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
23073706 ATTTTGTTAC
* *
23073716 CTGATACTGATTATGATTCTATCACTTAATTCTGATT
1 CTGATTCTGATTATGATTCTATCACCTAATTCTGATT
* * * *
23073753 CTGATTTTGATTCTGATTCTGTCACCTATTTCTGATT
1 CTGATTCTGATTATGATTCTATCACCTAATTCTGATT
* *
23073790 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTATGATTCTA
23073811 GTTCTGATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTATGATTCTATCACCTAATTCTGATT
Found at i:23075799 original size:27 final size:27
Alignment explanation
Indices: 23075769--23075945 Score: 239
Period size: 27 Copynumber: 6.6 Consensus size: 27
23075759 TTAGTTTACC
**
23075769 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
23075796 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23075823 AAATTTCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23075850 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23075877 AAATTACGAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23075904 AAATTACTAAAATA-CCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23075930 AAATTACTAAAATACC
1 AAATTACCAAAATACC
23075946 TTCGACTTGT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 26 0.19
27 110 0.81
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:23075906 original size:81 final size:80
Alignment explanation
Indices: 23075769--23075991 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 80
23075759 TTAGTTTACC
* * * * * *
23075769 AAATTACCAAAATACCATTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTTCCAAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACGAAAATACCCCTGATTTATAAAATTACCAAA
*
23075834 ATACCCCTGGTTTGTA
66 ATA-CCCTGATTTGTA
* * *
23075850 AAATTACCAAAATACCCCTAGTTTGTAAAATTACGAAAATACCCCTGATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACGAAAATACCCCTGATTTATAAAATTACCAAA
23075915 ATACCCTGATTTGTA
66 ATACCCTGATTTGTA
* * * * * * * * *
23075930 AAATTACTAAAATACC-TTCGACTTGTACAATTACCAAAGTACCCCTAATTTACAAAATTACC
1 AAATTACCAAAATACCACTAG-TTTGTAAAATTACGAAAATACCCCTGATTTATAAAATTACC
23075992 GTTTTACCCT
Statistics
Matches: 120, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
79 2 0.02
80 59 0.49
81 59 0.49
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCACTAGTTTGTAAAATTACGAAAATACCCCTGATTTATAAAATTACCAAA
ATACCCTGATTTGTA
Found at i:23075963 original size:27 final size:26
Alignment explanation
Indices: 23075769--23075972 Score: 167
Period size: 27 Copynumber: 7.6 Consensus size: 26
23075759 TTAGTTTACC
* * *
23075769 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACTAAAATACC-TCGATTTGTA
* * *
23075796 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACTAAAATA-CCTCGATTTGTA
* * * *
23075823 AAATTTCCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCTC-GATTTGTA
* * *
23075850 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCTCGA-TTTGTA
* *
23075877 AAATTACGAAAATACCCCTGATTTGTA
1 AAATTACTAAAATACCTC-GATTTGTA
23075904 AAATTACTAAAATACC-CTGATTTGTA
1 AAATTACTAAAATACCTC-GATTTGTA
*
23075930 AAATTACTAAAATACCTTCGACTTGTA
1 AAATTACTAAAATACC-TCGATTTGTA
* * *
23075957 CAATTACCAAAGTACC
1 AAATTACTAAAATACC
23075973 CCTAATTTAC
Statistics
Matches: 154, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
26 28 0.18
27 122 0.79
28 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACTAAAATACCTCGATTTGTA
Found at i:23076027 original size:27 final size:26
Alignment explanation
Indices: 23075972--23076028 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
23075962 ACCAAAGTAC
****
23075972 CCCTAATTTACAAAATTACCGTTTTA
1 CCCTAATTTACAAAATTACCGAAACA
23075998 CCCTCAATTTACAAAATTACCGAAACA
1 CCCT-AATTTACAAAATTACCGAAACA
23076025 CCCT
1 CCCT
23076029 TATAGGGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.30
Consensus pattern (26 bp):
CCCTAATTTACAAAATTACCGAAACA
Found at i:23076042 original size:27 final size:27
Alignment explanation
Indices: 23076012--23076153 Score: 151
Period size: 27 Copynumber: 5.3 Consensus size: 27
23076002 CAATTTACAA
* *
23076012 AATTACCGAAACACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
23076039 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
23076066 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
23076093 AAATACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
23076120 AATTACC-AAGATACCCTTGTGGGGTAA
1 AATTACCGAA-ATACCCTTGTAGGGTAG
23076147 AATTACC
1 AATTACC
23076154 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 2 0.02
27 94 0.98
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:23076070 original size:54 final size:54
Alignment explanation
Indices: 23076012--23076152 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
23076002 CAATTTACAA
* *
23076012 AATTACCGAAACACCCTTATAGGGTAGAATTACTGAAATACCCCTGT-AGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAG
** *
23076066 AATTATTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
23076120 AATTACC-AAGATACCCTTGTGGGGTAAAATTAC
1 AATTACCGAA-ATACCCTTGTAGGGTAGAATTAC
23076153 CATTTTGCCC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 2 0.03
54 70 0.93
55 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
Found at i:23076822 original size:67 final size:67
Alignment explanation
Indices: 23076714--23076922 Score: 265
Period size: 67 Copynumber: 3.1 Consensus size: 67
23076704 GAGGAAGCGT
* **
23076714 TCTGGCAGCCTCGCTGCAATTTGGTGGCCTCAACACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
23076779 TA
66 TA
* *
23076781 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCATCAGAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
23076846 TA
66 TA
* * * * * * * *
23076848 TCTGGAAGCCTCGCTGTATTCTGGTGGCTTCGCCACACATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCG-C-CAC--ATATATCTGTTCTGGTGACTTCGTC
23076913 ACAATA
62 ACAATA
23076919 TCTG
1 TCTG
23076923 TATCTGGTGA
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
67 90 0.73
68 1 0.01
69 3 0.02
71 29 0.24
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:23077102 original size:25 final size:25
Alignment explanation
Indices: 23077074--23077135 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
23077064 TCACATTCTA
* *
23077074 ATTCTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGTCACCTAATACTG
* * *
23077099 ATTCTGATTCTGTCACTTAATTCTG
1 ATTCTGATTTTGTCACCTAATACTG
23077124 ATTCTGATTTTG
1 ATTCTGATTTTG
23077136 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (25 bp):
ATTCTGATTTTGTCACCTAATACTG
Found at i:23077105 original size:6 final size:6
Alignment explanation
Indices: 23077068--23077192 Score: 69
Period size: 6 Copynumber: 20.3 Consensus size: 6
23077058 TTGCATTCAC
* * * * *
23077068 ATTCTA ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACTTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * *
23077118 ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG TTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
23077167 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
23077193 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.06
6 74 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:23077109 original size:31 final size:31
Alignment explanation
Indices: 23077068--23077178 Score: 100
Period size: 31 Copynumber: 3.6 Consensus size: 31
23077058 TTGCATTCAC
* *
23077068 ATTCTAATTCTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTTTGTTACCTGATTCTG
* **
23077099 ATTCTGATTCTGTCACTTAATT--CTGATTCTG
1 ATTCTGATTCTG--ATTTTGTTACCTGATTCTG
* * * *
23077130 ATTTTGATTCTGATTCTGTCACCTGTTTCTG
1 ATTCTGATTCTGATTTTGTTACCTGATTCTG
*
23077161 ATTCTGATTCTCATTTTG
1 ATTCTGATTCTGATTTTG
23077179 ATTCTAGTTC
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
29 3 0.05
31 53 0.87
33 5 0.08
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTTTGTTACCTGATTCTG
Found at i:23077123 original size:19 final size:19
Alignment explanation
Indices: 23077097--23077166 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
23077087 TACCTGATAC
23077097 TGATTCTGATTCTGTCACT
1 TGATTCTGATTCTGTCACT
* *
23077116 TAATTCTGATTCTG--ATTT
1 TGATTCTGATTCTGTCA-CT
*
23077134 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACT
*
23077153 TGTTTCTGATTCTG
1 TGATTCTGATTCTG
23077167 ATTCTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 14 0.33
19 26 0.62
20 1 0.02
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.50
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACT
Found at i:23077131 original size:37 final size:37
Alignment explanation
Indices: 23077090--23077183 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
23077080 ATTTTGTTAC
* *
23077090 CTGATACTGATTCTGATTCTGTCACTTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* **
23077127 CTGATTTTGATTCTGATTCTGTCACCTGTTTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
23077164 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
23077184 AGTTCTGATA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:23079814 original size:16 final size:15
Alignment explanation
Indices: 23079788--23079826 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
23079778 ATTGAATTAG
23079788 AAATAAAAATAACCT
1 AAATAAAAATAACCT
*
23079803 AAATACAAAATAATCT
1 AAATA-AAAATAACCT
*
23079819 AAAGAAAA
1 AAATAAAA
23079827 CCTAAAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (15 bp):
AAATAAAAATAACCT
Found at i:23091260 original size:39 final size:40
Alignment explanation
Indices: 23091160--23091337 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
23091150 TCGAATGATG
* * *
23091160 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
23091199 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
23091240 TCCGGGCTAAG-CCCGAAGGCATTGGTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
23091279 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23091318 AACCGGGCTATGTCCCGAAG
1 -TCCGGGCTAAGTCCCGAAG
23091338 TCCTTTGAAC
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.30
40 71 0.62
41 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:23091375 original size:79 final size:78
Alignment explanation
Indices: 23091212--23091377 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 78
23091202 TGGACTAAGA
*
23091212 TCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT-GTGAGAGTTACTA
* *
23091277 AATCCGGGTTAAGT
65 AATCCGAGTTAAAT
* * * *
23091291 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGTCCTT-TGAACGAG-TA
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGTG-A-GAGTTA
*
23091353 CCTATATCC-AGTTAAAT
62 -CTAAATCCGAGTTAAAT
23091370 TCCGAAGG
1 TCCGAAGG
23091378 TACGTGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
78 4 0.05
79 49 0.67
80 20 0.27
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (78 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGTGAGAGTTACTAA
ATCCGAGTTAAAT
Found at i:23095221 original size:26 final size:26
Alignment explanation
Indices: 23095192--23095241 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
23095182 CTCCTCCCAT
23095192 CCCTC-TCCCTTTCCCTTTCTTTCTTC
1 CCCTCATCCC-TTCCCTTTCTTTCTTC
**
23095218 CCCTCATTTCTTCCCTTTCTTTCT
1 CCCTCATCCCTTCCCTTTCTTTCT
23095242 CCCTTCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.52
Consensus pattern (26 bp):
CCCTCATCCCTTCCCTTTCTTTCTTC
Found at i:23095244 original size:12 final size:13
Alignment explanation
Indices: 23095202--23095246 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
23095192 CCCTCTCCCT
23095202 TTCCCTTTCTTTC
1 TTCCCTTTCTTTC
*
23095215 TTCCC-CTCATTTC
1 TTCCCTTTC-TTTC
23095228 TTCCCTTTCTTTC
1 TTCCCTTTCTTTC
23095241 -TCCCTT
1 TTCCCTT
23095247 CCACCAGCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 8 0.29
13 18 0.64
14 2 0.07
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (13 bp):
TTCCCTTTCTTTC
Found at i:23095434 original size:37 final size:37
Alignment explanation
Indices: 23095393--23095475 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 37
23095383 TATATCCTTT
*
23095393 TTTTATTTTGTTTCATTCTTATTTATT-TATTTATTT-A
1 TTTTATTTTATTT-ATTCTTATTT-TTATATTTATTTAA
* *
23095430 TTTTA-TTTATTTATTTTTATTTTTATCTTTATTTAAA
1 TTTTATTTTATTTATTCTTATTTTTATATTTATTT-AA
23095467 TTTTATTTT
1 TTTTATTTT
23095476 CTCTTCTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
34 2 0.05
35 17 0.44
36 6 0.15
37 11 0.28
38 3 0.08
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (37 bp):
TTTTATTTTATTTATTCTTATTTTTATATTTATTTAA
Found at i:23095464 original size:4 final size:4
Alignment explanation
Indices: 23095411--23095445 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
23095401 TGTTTCATTC
23095411 TTAT TTAT TTAT TTAT TTATT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTA-T TTAT TTAT TTAT TT
23095446 TTATTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:23097322 original size:30 final size:30
Alignment explanation
Indices: 23097288--23097345 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
23097278 TAAGCACTTC
23097288 CACACAAGT-GATCCACACACCCGTGTGTGA
1 CACACAAGTAGA-CCACACACCCGTGTGTGA
** *
23097318 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACAAGTAGACCACACACCCGTGTGT
23097346 CATGGCTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (30 bp):
CACACAAGTAGACCACACACCCGTGTGTGA
Found at i:23098077 original size:34 final size:34
Alignment explanation
Indices: 23098034--23098103 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
23098024 TTAATCAACC
23098034 TAGAGTCAGTTGTTTTTAGTCTCGAAAGGGATAA
1 TAGAGTCAGTTGTTTTTAGTCTCGAAAGGGATAA
23098068 TAGAGTCAGTTGTTTTTAGTCTCGAAAGGGATAA
1 TAGAGTCAGTTGTTTTTAGTCTCGAAAGGGATAA
23098102 TA
1 TA
23098104 ACATAAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.36
Consensus pattern (34 bp):
TAGAGTCAGTTGTTTTTAGTCTCGAAAGGGATAA
Found at i:23101724 original size:28 final size:27
Alignment explanation
Indices: 23101661--23101730 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
23101651 ATATTAAGTC
*
23101661 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
23101688 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
23101716 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23101731 GTACAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:23115139 original size:25 final size:25
Alignment explanation
Indices: 23115111--23115185 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
23115101 AACAACCTCT
23115111 CAAATTAGATAATCACCTAACTTAA
1 CAAATTAGATAATCACCTAACTTAA
*
23115136 CAAA-TAG-TCAAACAACCT--C-T--
1 CAAATTAGAT-AATC-ACCTAACTTAA
*
23115156 CAAATTAGATAATCACGTAACTTAA
1 CAAATTAGATAATCACCTAACTTAA
23115181 CAAAT
1 CAAAT
23115186 CATCCTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 18
0.64 0.05 0.31
Matches are distributed among these distances:
20 7 0.18
21 6 0.16
22 3 0.08
23 3 0.08
24 6 0.16
25 13 0.34
ACGTcount: A:0.48, C:0.21, G:0.05, T:0.25
Consensus pattern (25 bp):
CAAATTAGATAATCACCTAACTTAA
Found at i:23117834 original size:21 final size:21
Alignment explanation
Indices: 23117786--23117854 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
23117776 AACTGGGCCA
* *
23117786 TGTGGCTTTCCC-ACATGACCG
1 TGTGGC-TTCCCTACATGGCTG
*
23117807 TGAGGCTTCCCTACATGGCTG
1 TGTGGCTTCCCTACATGGCTG
* *
23117828 TGTGGCTTTCCTATAT-GCATG
1 TGTGGCTTCCCTACATGGC-TG
23117849 TGTGGC
1 TGTGGC
23117855 CAGACCGTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 7 0.17
21 33 0.82
ACGTcount: A:0.13, C:0.26, G:0.28, T:0.33
Consensus pattern (21 bp):
TGTGGCTTCCCTACATGGCTG
Found at i:23118764 original size:34 final size:34
Alignment explanation
Indices: 23118725--23118792 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
23118715 CCTATGAATA
23118725 GCCCATACATTTCTTTATTTCCCAACATCCTCAT
1 GCCCATACATTTCTTTATTTCCCAACATCCTCAT
*
23118759 GCCCATACATTTCTTTATTTCCCAACATTCTCAT
1 GCCCATACATTTCTTTATTTCCCAACATCCTCAT
23118793 AAACTTTTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.34, G:0.03, T:0.40
Consensus pattern (34 bp):
GCCCATACATTTCTTTATTTCCCAACATCCTCAT
Found at i:23120082 original size:43 final size:43
Alignment explanation
Indices: 23120035--23120164 Score: 174
Period size: 43 Copynumber: 3.0 Consensus size: 43
23120025 CATGGTCGTA
*
23120035 TCACTTTGCCGTGTGTCACACATGGCTGAGACACACACCTATG
1 TCACTTTGCCGTGTGTCACACATGGCTGAGACACACACCCATG
* * * *
23120078 TCACTTGGCTGTGTGTCACACATGACTGAGACACACACCCGTG
1 TCACTTTGCCGTGTGTCACACATGGCTGAGACACACACCCATG
* *
23120121 T--CTCTGCCCGTGTGTCACACACGGCTGAGACACACACCCATG
1 TCACTTTG-CCGTGTGTCACACATGGCTGAGACACACACCCATG
23120163 TC
1 TC
23120165 TCTGCTTGTG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
41 3 0.04
42 32 0.43
43 39 0.53
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.23
Consensus pattern (43 bp):
TCACTTTGCCGTGTGTCACACATGGCTGAGACACACACCCATG
Found at i:23120149 original size:42 final size:42
Alignment explanation
Indices: 23120043--23120169 Score: 182
Period size: 42 Copynumber: 3.0 Consensus size: 42
23120033 TATCACTTTG
* * *
23120043 CCGTGTGTCACACATGGCTGAGACACACACCTATGTCACTTGG
1 CCGTGTGTCACACATGGCTGAGACACACACCCATGTCTC-TGC
* * *
23120086 CTGTGTGTCACACATGACTGAGACACACACCCGTGTCTCTGC
1 CCGTGTGTCACACATGGCTGAGACACACACCCATGTCTCTGC
*
23120128 CCGTGTGTCACACACGGCTGAGACACACACCCATGTCTCTGC
1 CCGTGTGTCACACATGGCTGAGACACACACCCATGTCTCTGC
23120170 TTGTGTGGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 40 0.54
43 34 0.46
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (42 bp):
CCGTGTGTCACACATGGCTGAGACACACACCCATGTCTCTGC
Found at i:23129418 original size:26 final size:26
Alignment explanation
Indices: 23129368--23129418 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23129358 CCAATATCGC
* *
23129368 AGCATAGCTGCCAATAGTAATAATGT
1 AGCAGAGCTGCCAATAGTAAGAATGT
* *
23129394 AGCAGAGCTGCCAGTAGTCAGAATG
1 AGCAGAGCTGCCAATAGTAAGAATG
23129419 GCTAAAAGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (26 bp):
AGCAGAGCTGCCAATAGTAAGAATGT
Found at i:23129449 original size:22 final size:22
Alignment explanation
Indices: 23129412--23129476 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
23129402 TGCCAGTAGT
* * *
23129412 CAGAATGGCTAAAAGCCGTAAA
1 CAGAATAGCTATAAGCCATAAA
* *
23129434 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTATAAGCCATAAA
*
23129456 CAGAATGGCTATAAGCCATAA
1 CAGAATAGCTATAAGCCATAA
23129477 GTACAGTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (22 bp):
CAGAATAGCTATAAGCCATAAA
Found at i:23129538 original size:32 final size:32
Alignment explanation
Indices: 23129468--23129638 Score: 204
Period size: 32 Copynumber: 5.4 Consensus size: 32
23129458 GAATGGCTAT
* * *
23129468 AAGCCATAAGT-ACAGTAATATGATTGGCTCA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
23129499 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
23129531 CAA-CCATCAGTAACAGTAATATGATCAGCGCC
1 -AAGCCATCAGTAACAGTAATATGATCGGCACA
*
23129563 AAGCCATCAGTAAC-GATAATATGATCGACACA
1 AAGCCATCAGTAACAG-TAATATGATCGGCACA
* *
23129595 AAGCCATCAGTAACGGTAATATGATCGGCATA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
23129627 AAGCCATCAGTA
1 AAGCCATCAGTA
23129639 GTATCGCAGT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
31 13 0.11
32 103 0.87
33 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:23129884 original size:27 final size:27
Alignment explanation
Indices: 23129846--23130697 Score: 921
Period size: 27 Copynumber: 31.6 Consensus size: 27
23129836 CCACTAGGGC
* * *
23129846 ATTACGGTTATTTTACCCTATAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* * *
23129873 ATTACGATTATTTTACCCTATAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
* *
23129900 ATTACAATCATTATACCCTACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* * *
23129927 ATTACGATCATTTTATCCTACAGTGGC
1 ATTACGATCATTTTACCCTACAGGGGT
* * * *
23129954 ATTA-TAGTTATTTTACCCTATAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
*
23129981 ATTA-TAGTCATTTTACCCTACAGGGGT
1 ATTACGA-TCATTTTACCCTACAGGGGT
* *
23130008 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130035 ATTAC-AGTCATTTTACCCTACAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
* * *
23130062 ATTACGACCATTTTACCCTACAAGAGT
1 ATTACGATCATTTTACCCTACAGGGGT
23130089 ATTAC-AGTCATTTTACCCTACAGGGGT
1 ATTACGA-TCATTTTACCCTACAGGGGT
* * *
23130116 ATTAC-AGTTATTTTACCCTATAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
* * * *
23130143 ATTATGGTCATTTTACCGTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
* * *
23130170 ATTGCGGTCATTTTACCCAACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* *
23130197 ATTA-TAGTCATTTTACCCTACAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
* *
23130224 ATTACGATCATTTTACCCTACATGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130251 ATTACGGTCATTTTACCCTACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* * *
23130278 ATTACGGTCATTTTATCCTACGGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
23130305 ATTACGATCATTTTACCCTACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130332 ATTAC-AGTCATTTTACCCTACAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
* * * * *
23130359 ATTATGGTCATTTTACCGTACATGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
23130386 ATTACGATCATTTTACCCTACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* * * *
23130413 ATTA-TAGTCATTTTACCCCACAGAGGC
1 ATTACGA-TCATTTTACCCTACAGGGGT
* *
23130440 ATTACGATCATTTTACCCTACATGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130467 ATTACGGTCATTTTACCCTACAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* **
23130494 ATTACGGTCATTTTACCCTATGGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130521 ATTACGATCATTTTACCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGT
* * * *
23130548 ATTACGGTCATTTTACCTTATAGGTGT
1 ATTACGATCATTTTACCCTACAGGGGT
* *
23130575 ATTATGATCATTTTACCCTACAAGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* *
23130602 ATTAC-AGTCATTTTACCTTACAAGGGT
1 ATTACGA-TCATTTTACCCTACAGGGGT
* *
23130629 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
* **
23130656 ATTACGGTCATTTTACCCTGTAGGGGT
1 ATTACGATCATTTTACCCTACAGGGGT
*
23130683 ATTACGGTCATTTTA
1 ATTACGATCATTTTA
23130698 TAAATATTGG
Statistics
Matches: 707, Mismatches: 104, Indels: 28
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.01
27 699 0.99
28 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
ATTACGATCATTTTACCCTACAGGGGT
Found at i:23132717 original size:43 final size:42
Alignment explanation
Indices: 23132669--23132840 Score: 136
Period size: 43 Copynumber: 4.1 Consensus size: 42
23132659 GTGTGATTTC
* *
23132669 GTGTAATACCATGTCTGGGACATTGGCATCGATATGAGATTAT
1 GTGTAAGACCATATCTGGGACATTGGCATCG-TATGAGATTAT
* * *
23132712 GTGTAAGGCCATGTCTAGGACATTGGCAT-GTAT-ATGATT-T
1 GTGTAAGACCATATCTGGGACATTGGCATCGTATGA-GATTAT
* * ** * * *
23132752 GTGTAAGACCCTATCTGAGACAGAGGCATCGATATGTGATAAC
1 GTGTAAGACCATATCTGGGACATTGGCATCG-TATGAGATTAT
* * * *
23132795 ATGTAAGACCATATCTGGGATA-TGGCATTGTATGTGATATAT
1 GTGTAAGACCATATCTGGGACATTGGCATCGTATGAGAT-TAT
23132837 GTGT
1 GTGT
23132841 TTTTGAGTAT
Statistics
Matches: 101, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
40 24 0.24
41 16 0.16
42 17 0.17
43 44 0.44
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACATTGGCATCGTATGAGATTAT
Found at i:23136072 original size:47 final size:47
Alignment explanation
Indices: 23135987--23136105 Score: 157
Period size: 47 Copynumber: 2.5 Consensus size: 47
23135977 CTTCGGGACT
* * * * *
23135987 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
23136034 TGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
23136081 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
23136106 ACCAACCCTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:23136401 original size:39 final size:40
Alignment explanation
Indices: 23136311--23136471 Score: 170
Period size: 40 Copynumber: 4.0 Consensus size: 40
23136301 CAGAATTTAA
** *
23136311 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
23136351 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23136390 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23136430 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23136470 CC
1 CC
23136472 AGACATCATT
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 55 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23139036 original size:50 final size:50
Alignment explanation
Indices: 23138961--23139060 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
23138951 GTTTCTATCG
*
23138961 CTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAGCCATTAAC
1 CTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAACCATTAAC
* *
23139011 CTCTTTCCTTTTTTTAATTTTTCTTTCTTCCATAATATAAAACCATTAAC
1 CTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAACCATTAAC
23139061 TATTATCATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.26, C:0.23, G:0.01, T:0.50
Consensus pattern (50 bp):
CTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAACCATTAAC
Found at i:23154931 original size:24 final size:24
Alignment explanation
Indices: 23154896--23154943 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23154886 CACGTGATTC
* *
23154896 TGTATGATGCCTTTATGGTGTATT
1 TGTATGACGCCTTTATGGAGTATT
*
23154920 TGTATGACGCCTTTGTGGAGTATT
1 TGTATGACGCCTTTATGGAGTATT
23154944 CCATAAGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.27, T:0.46
Consensus pattern (24 bp):
TGTATGACGCCTTTATGGAGTATT
Found at i:23155962 original size:55 final size:54
Alignment explanation
Indices: 23155896--23156000 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 54
23155886 ATGCCAGGAG
* *
23155896 TACGCCAAGGTA-CTGACGATGTGGGTTATTATGCATACAGTGGAAAAGTGACAA
1 TACGCCAAGGTACCT-ACGAAGTGGGTTATGATGCATACAGTGGAAAAGTGACAA
*
23155950 NTACGCCAAGGTACCTACGAAGTGGGTTATGATGCATATAGTGGAAAAGTG
1 -TACGCCAAGGTACCTACGAAGTGGGTTATGATGCATACAGTGGAAAAGTG
23156001 GCATAGTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 44 0.96
56 2 0.04
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24
Consensus pattern (54 bp):
TACGCCAAGGTACCTACGAAGTGGGTTATGATGCATACAGTGGAAAAGTGACAA
Found at i:23163410 original size:27 final size:27
Alignment explanation
Indices: 23163380--23163669 Score: 327
Period size: 27 Copynumber: 10.8 Consensus size: 27
23163370 CATCTTTTAG
*
23163380 GGGTATTTCGGGCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGA
* *
23163407 GGGTATTTCGATCATTTTATCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGA
*
23163434 GGGTATTTTGGTCATTTTACCCTATG-
1 GGGTATTTCGGTCATTTTACCCTATGA
**
23163460 GGTGTATTTCGGTCATTTTTTCCTATG-
1 GG-GTATTTCGGTCATTTTACCCTATGA
* *
23163487 GGGATCTTTCAGTCATTTTACCCTAT-A
1 GGG-TATTTCGGTCATTTTACCCTATGA
* *
23163514 GGGGTATTTTGGTTATTTTACCCTATGA
1 -GGGTATTTCGGTCATTTTACCCTATGA
* *
23163542 GGGTATTTCGGTTATTTTACCTTATGA
1 GGGTATTTCGGTCATTTTACCCTATGA
* ** *
23163569 GGGTATTTTGGTCATTTTTTCCTATAA
1 GGGTATTTCGGTCATTTTACCCTATGA
* *
23163596 GGGTATTTCAGTCATTTTATCCTATG-
1 GGGTATTTCGGTCATTTTACCCTATGA
* *
23163622 GGGTATTTCGGTCATTTTACCTTATGG
1 GGGTATTTCGGTCATTTTACCCTATGA
**
23163649 GGGTATTTTAGTCATTTTACC
1 GGGTATTTCGGTCATTTTACC
23163670 TATTTTGGGG
Statistics
Matches: 223, Mismatches: 34, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.12
27 193 0.87
28 4 0.02
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.46
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTATGA
Found at i:23172521 original size:16 final size:15
Alignment explanation
Indices: 23172494--23172527 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
23172484 ATAACTAGTA
*
23172494 TATAATTATATTTAT
1 TATAATTATATTAAT
23172509 TATAATATATATTAAT
1 TATAAT-TATATTAAT
23172525 TAT
1 TAT
23172528 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:23173223 original size:25 final size:24
Alignment explanation
Indices: 23173184--23173242 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
23173174 ACTTTTCTCC
*
23173184 TAAATTTTAATTTTATTTAATTATT
1 TAAATTTTAATTTTATTGAATTA-T
23173209 TAAATTTTCAA-TTTATTGAATTAT
1 TAAATTTT-AATTTTATTGAATTAT
23173233 TAATATTTTA
1 TAA-ATTTTA
23173243 TACTAACTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 5 0.16
25 24 0.77
26 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (24 bp):
TAAATTTTAATTTTATTGAATTAT
Done.