Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 76 of 161
Found at i:23803042 original size:9 final size:9
Alignment explanation
Indices: 23803028--23803055 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
23803018 TCTTAATTAA
23803028 ACTTAATTT
1 ACTTAATTT
23803037 ACTTAATTT
1 ACTTAATTT
23803046 ACTTAATTT
1 ACTTAATTT
23803055 A
1 A
23803056 ATCCAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.54
Consensus pattern (9 bp):
ACTTAATTT
Found at i:23804117 original size:116 final size:116
Alignment explanation
Indices: 23803913--23804147 Score: 461
Period size: 116 Copynumber: 2.0 Consensus size: 116
23803903 TTATTGCCAT
23803913 CTTACTTAGCAATTTTAAAAACAACAAGATATAGAAGAATAGAGAAAGATGTATATTTACAATAT
1 CTTACTTAGCAATTTTAAAAACAACAAGATATAGAAGAATAGAGAAAGATGTATATTTACAATAT
*
23803978 TTTTCTAAAATATATATTTATAAACATACACATAAATGATATAAAATTTTA
66 TTTTCTAAAAAATATATTTATAAACATACACATAAATGATATAAAATTTTA
23804029 CTTACTTAGCAATTTTAAAAACAACAAGATATAGAAGAATAGAGAAAGATGTATATTTACAATAT
1 CTTACTTAGCAATTTTAAAAACAACAAGATATAGAAGAATAGAGAAAGATGTATATTTACAATAT
23804094 TTTTCTAAAAAATATATTTATAAACATACACATAAATGATATAAAATTTTA
66 TTTTCTAAAAAATATATTTATAAACATACACATAAATGATATAAAATTTTA
23804145 CTT
1 CTT
23804148 TTAATGGACA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.34
Consensus pattern (116 bp):
CTTACTTAGCAATTTTAAAAACAACAAGATATAGAAGAATAGAGAAAGATGTATATTTACAATAT
TTTTCTAAAAAATATATTTATAAACATACACATAAATGATATAAAATTTTA
Found at i:23808465 original size:43 final size:43
Alignment explanation
Indices: 23808406--23808531 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
23808396 GTTAAGATAT
* * ** *
23808406 TATTATAGGATATTATTTTTTAATAATTTAATTTTTAATGGGA
1 TATTATAAGATATTATTTTTTAGTAATTTAATTCCTAATAGGA
* * *
23808449 TATTATAAGATATTATTTCTTAGCAATTTGATTCCTAATAGGA
1 TATTATAAGATATTATTTTTTAGTAATTTAATTCCTAATAGGA
* *
23808492 TATTATTATAGGATATTATATTTTAGTAATTTGATTCCTA
1 TATTA-TA-A-GATATTATTTTTTAGTAATTTAATTCCTA
23808532 TGTAACTACT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 40 0.58
44 2 0.03
45 1 0.01
46 26 0.38
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (43 bp):
TATTATAAGATATTATTTTTTAGTAATTTAATTCCTAATAGGA
Found at i:23808499 original size:46 final size:44
Alignment explanation
Indices: 23808401--23808531 Score: 151
Period size: 46 Copynumber: 2.9 Consensus size: 44
23808391 CATGTGTTAA
* * **
23808401 GATATTATTATAGGATATTATTTTTTAATAATTTAATTTTTAATGG
1 GATATTATTATAGGATATTA-TTTTTAGTAATTTGATTCCTAAT-G
*
23808447 GATATTA-TA-A-GATATTATTTCTTAGCAATTTGATTCCTAATAG
1 GATATTATTATAGGATATTATTT-TTAGTAATTTGATTCCTAAT-G
23808490 GATATTATTATAGGATATTATATTTTAGTAATTTGATTCCTA
1 GATATTATTATAGGATATTAT-TTTTAGTAATTTGATTCCTA
23808532 TGTAACTACT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
42 3 0.04
43 30 0.41
44 3 0.04
45 3 0.04
46 32 0.44
47 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (44 bp):
GATATTATTATAGGATATTATTTTTAGTAATTTGATTCCTAATG
Found at i:23808504 original size:13 final size:13
Alignment explanation
Indices: 23808486--23808510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23808476 TTGATTCCTA
23808486 ATAGGATATTATT
1 ATAGGATATTATT
23808499 ATAGGATATTAT
1 ATAGGATATTAT
23808511 ATTTTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
ATAGGATATTATT
Found at i:23810714 original size:50 final size:50
Alignment explanation
Indices: 23810659--23810852 Score: 169
Period size: 50 Copynumber: 3.9 Consensus size: 50
23810649 TATTAAGGTT
* * * * *
23810659 ATGAGAGATCCCAGGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAG
1 ATGAGAGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCACCAAG
* ** * * ** * *
23810709 ATGAGAGGTCCCCCGTAAGACCATATCTGGGACATGGCATGGGCGTCGAT
1 ATGAGAGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCACCAAG
* *
23810759 ATGAGA-ACTCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGCACAG
1 ATGAGAGA-TCCCATGTAAGACCATATCTAGGACATGGCATTGGCACCA-AG
* * * *
23810810 --GAAACATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 ATGAGAGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCA
23810853 TGGTACTATC
Statistics
Matches: 116, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 37 0.32
50 78 0.67
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (50 bp):
ATGAGAGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCACCAAG
Found at i:23814468 original size:46 final size:46
Alignment explanation
Indices: 23814396--23814529 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 46
23814386 GTCTTAATAT
*
23814396 TCATGTATTCTCAAGTCCGCAACATATGCAAGAGCTCAAAACCTAA
1 TCATGTATTCTCAAGTTCGCAACATATGCAAGAGCTCAAAACCTAA
* * * * * *
23814442 TCCTTTATTCTCAAGTTCGCAACATATACAGGAGCTCGAAACCTAT
1 TCATGTATTCTCAAGTTCGCAACATATGCAAGAGCTCAAAACCTAA
** * *
23814488 TCATGTATTCTCGCG-TCTACAACATATGCAAGAGATCAAAAC
1 TCATGTATTCTCAAGTTC-GCAACATATGCAAGAGCTCAAAAC
23814530 TTGGGCAAAC
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 2 0.03
46 69 0.97
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.27
Consensus pattern (46 bp):
TCATGTATTCTCAAGTTCGCAACATATGCAAGAGCTCAAAACCTAA
Found at i:23819486 original size:40 final size:40
Alignment explanation
Indices: 23819438--23819585 Score: 269
Period size: 40 Copynumber: 3.7 Consensus size: 40
23819428 GCAAACACAT
* * *
23819438 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23819478 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23819518 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23819558 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
23819586 TCCAATGCTC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:23822454 original size:43 final size:43
Alignment explanation
Indices: 23822406--23822499 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
23822396 ATTATTATAG
* *
23822406 GATATTATATTTTAATAATTTGATTCCTAAT-AGGATATTACAA
1 GATATTATATCTTAACAATTTGATTCCTAATGA-GATATTACAA
* * *
23822449 GATATTATCTCTTAACAATTTGATTCCTAATGAGATATTATAG
1 GATATTATATCTTAACAATTTGATTCCTAATGAGATATTACAA
23822492 GATATTAT
1 GATATTAT
23822500 TATGGGATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.44
Consensus pattern (43 bp):
GATATTATATCTTAACAATTTGATTCCTAATGAGATATTACAA
Found at i:23822913 original size:20 final size:20
Alignment explanation
Indices: 23822880--23822926 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
23822870 AAAACTTTAA
* *
23822880 TTTAA-TATAATATTTATAT
1 TTTAATTATAATATTCATAC
*
23822899 TTTAATTATATTATTCATAC
1 TTTAATTATAATATTCATAC
23822919 TTT-ATTAT
1 TTTAATTAT
23822927 CTCTGATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTAATTATAATATTCATAC
Found at i:23825005 original size:51 final size:51
Alignment explanation
Indices: 23824929--23825032 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
23824919 TGTGTTGTAA
*
23824929 ATTTATTGTTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAG
1 ATTTATTATTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAG
23824980 ATTTATTATTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAG
1 ATTTATTATTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAG
23825031 AT
1 AT
23825033 GAAAGGTTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (51 bp):
ATTTATTATTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAG
Found at i:23825043 original size:51 final size:51
Alignment explanation
Indices: 23824936--23825045 Score: 175
Period size: 51 Copynumber: 2.2 Consensus size: 51
23824926 TAAATTTATT
** **
23824936 GTTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAGATTTATT
1 GTTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAGATGAAAG
*
23824987 ATTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAGATGAAAG
1 GTTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAGATGAAAG
23825038 GTTTATAT
1 GTTTATAT
23825046 GTGGATATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (51 bp):
GTTTATATAATTCGTGTAAGGTAAGTAATCCACCTCTATAATAGATGAAAG
Found at i:23826327 original size:20 final size:21
Alignment explanation
Indices: 23826280--23826328 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
23826270 TACCGATTTT
23826280 ATATTAAAAATTTATACAAAA
1 ATATTAAAAATTTATACAAAA
*
23826301 ATA-TAAAAATTTAT-TAAAA
1 ATATTAAAAATTTATACAAAA
*
23826320 TTATTAAAA
1 ATATTAAAA
23826329 GAGTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 16 0.64
21 3 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
ATATTAAAAATTTATACAAAA
Found at i:23826328 original size:19 final size:20
Alignment explanation
Indices: 23826280--23826328 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
23826270 TACCGATTTT
23826280 ATATTAAAAATTTATACAAAA
1 ATATT-AAAATTTATACAAAA
* *
23826301 ATATAAAAATTTAT-TAAAA
1 ATATTAAAATTTATACAAAA
*
23826320 TTATTAAAA
1 ATATTAAAA
23826329 GAGTAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 11 0.46
20 9 0.38
21 4 0.17
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
ATATTAAAATTTATACAAAA
Found at i:23826897 original size:19 final size:20
Alignment explanation
Indices: 23826862--23826900 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
23826852 TCTTACTTCT
*
23826862 ATAAATAGAAGTTTCTATTA
1 ATAAATAGAAATTTCTATTA
23826882 ATAAAT-GAAATTTCTATTA
1 ATAAATAGAAATTTCTATTA
23826901 TATTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (20 bp):
ATAAATAGAAATTTCTATTA
Found at i:23827042 original size:25 final size:24
Alignment explanation
Indices: 23827010--23827060 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
23827000 AATTCAAATT
* *
23827010 TAAATATTTTTTAAA-TAATTAATA
1 TAAATATTTGTAAAATTAA-TAATA
23827034 TAAACTATTTGTAAAATTAATAATA
1 TAAA-TATTTGTAAAATTAATAATA
23827059 TA
1 TA
23827061 TAGAACATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 16 0.70
26 3 0.13
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
TAAATATTTGTAAAATTAATAATA
Found at i:23827084 original size:29 final size:30
Alignment explanation
Indices: 23827020--23827084 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 30
23827010 TAAATATTTT
*
23827020 TTAAATAATTAATATAAACTATTTGTAAAA
1 TTAAATAATTAATATAAACTATTTGAAAAA
23827050 TT-AATAA-T-ATATAGAAC-ATTTGAAAAA
1 TTAAATAATTAATATA-AACTATTTGAAAAA
23827077 GTTAAATA
1 -TTAAATA
23827085 TAGTAACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
27 14 0.45
28 6 0.19
29 9 0.29
30 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (30 bp):
TTAAATAATTAATATAAACTATTTGAAAAA
Found at i:23827154 original size:24 final size:25
Alignment explanation
Indices: 23827092--23827154 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
23827082 ATATAGTAAC
* *
23827092 AAATAAGATTTAAATAATTTAAAAT
1 AAATAATATATAAATAATTTAAAAT
* *
23827117 AAATAATATTTAAATAATTTAATAT
1 AAATAATATATAAATAATTTAAAAT
*
23827142 -GATAATATATAAA
1 AAATAATATATAAA
23827155 ATATAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 11 0.32
25 23 0.68
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (25 bp):
AAATAATATATAAATAATTTAAAAT
Found at i:23836758 original size:999 final size:999
Alignment explanation
Indices: 23834822--23836819 Score: 3996
Period size: 999 Copynumber: 2.0 Consensus size: 999
23834812 TGTCATCAGT
23834822 AGATTAACTAAGAAAAAGGAACAGAGTTTCATGGATAATTATTACATTATATCATATGCAAGCAA
1 AGATTAACTAAGAAAAAGGAACAGAGTTTCATGGATAATTATTACATTATATCATATGCAAGCAA
23834887 TTATTTGTCATCGGTGATGCATTACTGATCAAAAACTGTACTAGACCTTTGTCTCTAGCCACTTA
66 TTATTTGTCATCGGTGATGCATTACTGATCAAAAACTGTACTAGACCTTTGTCTCTAGCCACTTA
23834952 CACGAAAAGCAAGAAGCTTAACCATCTTCAAATTCTATTTCATTTTAGAAAGTAATGCATAAGGA
131 CACGAAAAGCAAGAAGCTTAACCATCTTCAAATTCTATTTCATTTTAGAAAGTAATGCATAAGGA
23835017 AAAGATCTTCATTACATACACTCATACTCGATGCTTTCACTACTACTGGATCCTATATTGGCAAG
196 AAAGATCTTCATTACATACACTCATACTCGATGCTTTCACTACTACTGGATCCTATATTGGCAAG
23835082 TTGATCCAGGCAAACTCAAAGTTGATCACGATATATTCTTATATTGGATTATTTCATGTCTTGAT
261 TTGATCCAGGCAAACTCAAAGTTGATCACGATATATTCTTATATTGGATTATTTCATGTCTTGAT
23835147 GGAGATGCTCAAACAAATAAATTGCGCAATGAAGACAAATTAGTTGTCAGTAAAATATGACCATA
326 GGAGATGCTCAAACAAATAAATTGCGCAATGAAGACAAATTAGTTGTCAGTAAAATATGACCATA
23835212 AAGGATATGACTGGGCCACACGCATGATCAGTTTGATAGAAAGTTACGTTGCGCCATCCCTTACA
391 AAGGATATGACTGGGCCACACGCATGATCAGTTTGATAGAAAGTTACGTTGCGCCATCCCTTACA
23835277 TTTTTCTTTAAGTGTTGGGGTCTAACACTCATTTCTGCTACATTTTTTTCGGAAATGGGTATCAG
456 TTTTTCTTTAAGTGTTGGGGTCTAACACTCATTTCTGCTACATTTTTTTCGGAAATGGGTATCAG
23835342 GATACAACCCTATAATGACCCTTCAAATACATGAAAAACTTTCAAAAAATTGAAAATACCCACGT
521 GATACAACCCTATAATGACCCTTCAAATACATGAAAAACTTTCAAAAAATTGAAAATACCCACGT
23835407 CAGGCACATACAGTATCTAACACTCAAACCCAAGTCCAAATAACGCCGAAAGTGCCTCCAACAAA
586 CAGGCACATACAGTATCTAACACTCAAACCCAAGTCCAAATAACGCCGAAAGTGCCTCCAACAAA
23835472 TGAAGATATCAAGCATATATGACTTCTAATCTGTACCTGTTCAACAACAACATTCAAGGAATTGA
651 TGAAGATATCAAGCATATATGACTTCTAATCTGTACCTGTTCAACAACAACATTCAAGGAATTGA
23835537 AAGCAGCAATAATTTCTTGAAATAAAGTGGAGACAGCATCAAATCCAGAAGAGGAGCAGTAAGGT
716 AAGCAGCAATAATTTCTTGAAATAAAGTGGAGACAGCATCAAATCCAGAAGAGGAGCAGTAAGGT
23835602 TTCGAGTCAATTGGCACCCAGCACTCCTCCATCTCCTTTCTGCATAATTTTAATGTAAAATTTTC
781 TTCGAGTCAATTGGCACCCAGCACTCCTCCATCTCCTTTCTGCATAATTTTAATGTAAAATTTTC
23835667 TTAAATTGTGCAGAACCTCAGATTGGTAAAATAAATGGAACAAATCCACATATATAACCACCTTA
846 TTAAATTGTGCAGAACCTCAGATTGGTAAAATAAATGGAACAAATCCACATATATAACCACCTTA
23835732 TGGTCTTTTTCAAGAGATAAAATTCATTTTCAAATCCTGCATTCATTTCCTGTGCATATACCATT
911 TGGTCTTTTTCAAGAGATAAAATTCATTTTCAAATCCTGCATTCATTTCCTGTGCATATACCATT
23835797 TATTAGTTCATCATGAAATACAAC
976 TATTAGTTCATCATGAAATACAAC
23835821 AGATTAACTAAGAAAAAGGAACAGAGTTTCATGGATAATTATTACATTATATCATATGCAAGCAA
1 AGATTAACTAAGAAAAAGGAACAGAGTTTCATGGATAATTATTACATTATATCATATGCAAGCAA
23835886 TTATTTGTCATCGGTGATGCATTACTGATCAAAAACTGTACTAGACCTTTGTCTCTAGCCACTTA
66 TTATTTGTCATCGGTGATGCATTACTGATCAAAAACTGTACTAGACCTTTGTCTCTAGCCACTTA
23835951 CACGAAAAGCAAGAAGCTTAACCATCTTCAAATTCTATTTCATTTTAGAAAGTAATGCATAAGGA
131 CACGAAAAGCAAGAAGCTTAACCATCTTCAAATTCTATTTCATTTTAGAAAGTAATGCATAAGGA
23836016 AAAGATCTTCATTACATACACTCATACTCGATGCTTTCACTACTACTGGATCCTATATTGGCAAG
196 AAAGATCTTCATTACATACACTCATACTCGATGCTTTCACTACTACTGGATCCTATATTGGCAAG
23836081 TTGATCCAGGCAAACTCAAAGTTGATCACGATATATTCTTATATTGGATTATTTCATGTCTTGAT
261 TTGATCCAGGCAAACTCAAAGTTGATCACGATATATTCTTATATTGGATTATTTCATGTCTTGAT
23836146 GGAGATGCTCAAACAAATAAATTGCGCAATGAAGACAAATTAGTTGTCAGTAAAATATGACCATA
326 GGAGATGCTCAAACAAATAAATTGCGCAATGAAGACAAATTAGTTGTCAGTAAAATATGACCATA
23836211 AAGGATATGACTGGGCCACACGCATGATCAGTTTGATAGAAAGTTACGTTGCGCCATCCCTTACA
391 AAGGATATGACTGGGCCACACGCATGATCAGTTTGATAGAAAGTTACGTTGCGCCATCCCTTACA
23836276 TTTTTCTTTAAGTGTTGGGGTCTAACACTCATTTCTGCTACATTTTTTTCGGAAATGGGTATCAG
456 TTTTTCTTTAAGTGTTGGGGTCTAACACTCATTTCTGCTACATTTTTTTCGGAAATGGGTATCAG
23836341 GATACAACCCTATAATGACCCTTCAAATACATGAAAAACTTTCAAAAAATTGAAAATACCCACGT
521 GATACAACCCTATAATGACCCTTCAAATACATGAAAAACTTTCAAAAAATTGAAAATACCCACGT
23836406 CAGGCACATACAGTATCTAACACTCAAACCCAAGTCCAAATAACGCCGAAAGTGCCTCCAACAAA
586 CAGGCACATACAGTATCTAACACTCAAACCCAAGTCCAAATAACGCCGAAAGTGCCTCCAACAAA
23836471 TGAAGATATCAAGCATATATGACTTCTAATCTGTACCTGTTCAACAACAACATTCAAGGAATTGA
651 TGAAGATATCAAGCATATATGACTTCTAATCTGTACCTGTTCAACAACAACATTCAAGGAATTGA
23836536 AAGCAGCAATAATTTCTTGAAATAAAGTGGAGACAGCATCAAATCCAGAAGAGGAGCAGTAAGGT
716 AAGCAGCAATAATTTCTTGAAATAAAGTGGAGACAGCATCAAATCCAGAAGAGGAGCAGTAAGGT
23836601 TTCGAGTCAATTGGCACCCAGCACTCCTCCATCTCCTTTCTGCATAATTTTAATGTAAAATTTTC
781 TTCGAGTCAATTGGCACCCAGCACTCCTCCATCTCCTTTCTGCATAATTTTAATGTAAAATTTTC
23836666 TTAAATTGTGCAGAACCTCAGATTGGTAAAATAAATGGAACAAATCCACATATATAACCACCTTA
846 TTAAATTGTGCAGAACCTCAGATTGGTAAAATAAATGGAACAAATCCACATATATAACCACCTTA
23836731 TGGTCTTTTTCAAGAGATAAAATTCATTTTCAAATCCTGCATTCATTTCCTGTGCATATACCATT
911 TGGTCTTTTTCAAGAGATAAAATTCATTTTCAAATCCTGCATTCATTTCCTGTGCATATACCATT
23836796 TATTAGTTCATCATGAAATACAAC
976 TATTAGTTCATCATGAAATACAAC
23836820 CCCCTATGAC
Statistics
Matches: 999, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
999 999 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (999 bp):
AGATTAACTAAGAAAAAGGAACAGAGTTTCATGGATAATTATTACATTATATCATATGCAAGCAA
TTATTTGTCATCGGTGATGCATTACTGATCAAAAACTGTACTAGACCTTTGTCTCTAGCCACTTA
CACGAAAAGCAAGAAGCTTAACCATCTTCAAATTCTATTTCATTTTAGAAAGTAATGCATAAGGA
AAAGATCTTCATTACATACACTCATACTCGATGCTTTCACTACTACTGGATCCTATATTGGCAAG
TTGATCCAGGCAAACTCAAAGTTGATCACGATATATTCTTATATTGGATTATTTCATGTCTTGAT
GGAGATGCTCAAACAAATAAATTGCGCAATGAAGACAAATTAGTTGTCAGTAAAATATGACCATA
AAGGATATGACTGGGCCACACGCATGATCAGTTTGATAGAAAGTTACGTTGCGCCATCCCTTACA
TTTTTCTTTAAGTGTTGGGGTCTAACACTCATTTCTGCTACATTTTTTTCGGAAATGGGTATCAG
GATACAACCCTATAATGACCCTTCAAATACATGAAAAACTTTCAAAAAATTGAAAATACCCACGT
CAGGCACATACAGTATCTAACACTCAAACCCAAGTCCAAATAACGCCGAAAGTGCCTCCAACAAA
TGAAGATATCAAGCATATATGACTTCTAATCTGTACCTGTTCAACAACAACATTCAAGGAATTGA
AAGCAGCAATAATTTCTTGAAATAAAGTGGAGACAGCATCAAATCCAGAAGAGGAGCAGTAAGGT
TTCGAGTCAATTGGCACCCAGCACTCCTCCATCTCCTTTCTGCATAATTTTAATGTAAAATTTTC
TTAAATTGTGCAGAACCTCAGATTGGTAAAATAAATGGAACAAATCCACATATATAACCACCTTA
TGGTCTTTTTCAAGAGATAAAATTCATTTTCAAATCCTGCATTCATTTCCTGTGCATATACCATT
TATTAGTTCATCATGAAATACAAC
Found at i:23837180 original size:37 final size:37
Alignment explanation
Indices: 23837127--23837198 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
23837117 GTTAAAAGGT
*
23837127 CAGATACAAATGCTTCACATTGTAGAAACCATTTAGC
1 CAGATACAAATCCTTCACATTGTAGAAACCATTTAGC
23837164 CAGATACAAATCCTTCACATTGTAGAAACCATTTA
1 CAGATACAAATCCTTCACATTGTAGAAACCATTTA
23837199 TTTATTCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (37 bp):
CAGATACAAATCCTTCACATTGTAGAAACCATTTAGC
Found at i:23853520 original size:30 final size:28
Alignment explanation
Indices: 23853484--23853545 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
23853474 AAAAAAGCCG
23853484 TTTTTTTCAAAATTTACCGAAATGGGCCAA
1 TTTTTTT-AAAATTTACCGAAATGGGCC-A
** *
23853514 TTTTTTTATTATTTACCGGAATGGGCCA
1 TTTTTTTAAAATTTACCGAAATGGGCCA
23853542 TTTT
1 TTTT
23853546 CAGGGAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 17 0.59
30 7 0.24
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.45
Consensus pattern (28 bp):
TTTTTTTAAAATTTACCGAAATGGGCCA
Found at i:23854639 original size:31 final size:31
Alignment explanation
Indices: 23854573--23854640 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
23854563 TTTAGCCCAC
* * *
23854573 TTTAGTCCCTAACATTGTTAGACGTTCCTAG
1 TTTAGTCCCTAACATTATTAGACATTCCTAA
* *
23854604 TTTAGTCCCTAATATTATTATACATT-CTCAA
1 TTTAGTCCCTAACATTATTAGACATTCCT-AA
23854635 TTTAGT
1 TTTAGT
23854641 AAGATATCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 2 0.06
31 29 0.94
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.44
Consensus pattern (31 bp):
TTTAGTCCCTAACATTATTAGACATTCCTAA
Found at i:23854847 original size:26 final size:27
Alignment explanation
Indices: 23854808--23854891 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 27
23854798 TTTTTCTAAA
23854808 ATTTTTCATTATTTAAATAATAAATA-T
1 ATTTTT-ATTATTTAAATAATAAATATT
*
23854835 ATTTTTATAATTTAAATAATAAATAGCATT
1 ATTTTTATTATTTAAATAATAAAT---ATT
23854865 ATTTTTTATTATTTAAATAATTAAATA
1 A-TTTTTATTATTTAAATAA-TAAATA
23854892 AGTTATCCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
26 17 0.35
27 6 0.12
29 2 0.04
30 2 0.04
31 17 0.35
32 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
ATTTTTATTATTTAAATAATAAATATT
Found at i:23860556 original size:124 final size:124
Alignment explanation
Indices: 23860330--23860705 Score: 662
Period size: 124 Copynumber: 3.0 Consensus size: 124
23860320 TTAGGGTTTT
* *** * *
23860330 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTGTGATCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
23860395 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
65 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
23860455 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* *
23860520 GGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCTCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
23860579 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAATTCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
23860644 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
23860703 TAG
1 TAG
23860706 CATGTTTGGG
Statistics
Matches: 240, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
124 219 0.91
125 21 0.09
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (124 bp):
TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:23865195 original size:20 final size:20
Alignment explanation
Indices: 23865158--23865195 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23865148 TTTATTTTTA
*
23865158 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
23865178 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
23865196 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:23866060 original size:11 final size:12
Alignment explanation
Indices: 23866044--23866088 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
23866034 ATTTTTACGG
23866044 TTTAAAAAAAT-
1 TTTAAAAAAATA
23866055 TTTAAAAAAATA
1 TTTAAAAAAATA
** *
23866067 TTTTTAAAATTA
1 TTTAAAAAAATA
23866079 TTTAAAAAAA
1 TTTAAAAAAA
23866089 GGGAGTTAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TTTAAAAAAATA
Found at i:23866921 original size:15 final size:15
Alignment explanation
Indices: 23866897--23866926 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23866887 ATCTGGATTT
23866897 GTAATCAAATTTTAA
1 GTAATCAAATTTTAA
*
23866912 GTAATTAAATTTTAA
1 GTAATCAAATTTTAA
23866927 AATCAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
GTAATCAAATTTTAA
Found at i:23885189 original size:21 final size:22
Alignment explanation
Indices: 23885148--23885189 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
23885138 TTTGTTATAG
* *
23885148 TTTAAAAAACTGAAGCACATTC
1 TTTAAAAAACTCAAACACATTC
23885170 TTTAAAAAACTCAAAC-CATT
1 TTTAAAAAACTCAAACACATT
23885190 AAACAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.48, C:0.19, G:0.05, T:0.29
Consensus pattern (22 bp):
TTTAAAAAACTCAAACACATTC
Found at i:23889018 original size:15 final size:15
Alignment explanation
Indices: 23888998--23889053 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
23888988 ATGTAGAAAC
23888998 AATAATAATAACATT
1 AATAATAATAACATT
* *
23889013 AATAATAATAGCAAT
1 AATAATAATAACATT
* * *
23889028 AAAAACAATGAAC-TA
1 AATAATAAT-AACATT
23889043 AATAATAATAA
1 AATAATAATAA
23889054 TAAGAAAGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
14 2 0.06
15 27 0.87
16 2 0.06
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (15 bp):
AATAATAATAACATT
Found at i:23890691 original size:99 final size:99
Alignment explanation
Indices: 23890588--23891119 Score: 671
Period size: 99 Copynumber: 5.4 Consensus size: 99
23890578 TAGGGAAATG
* * * *
23890588 AGATTCACCGCTGTGGCCTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTCGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
* * * *
23890653 ACTTCAATCTATTCCGCTGCATCACTTGGAAGTA
66 ACTTCAATCTGTTCCGCTGCATCGCCTGAAAGTA
* * * ** * *
23890687 AGATTCGCCGTTGTGACTTCAATTTTTTGAATTGCAATGTCA-GGAAGTGAGATTTGTCGTTGT-
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
*
23890750 AGCTTTAATCTGTTCCGCTGCATCGCCTGAAAAGTA
66 A-CTTCAATCTGTTCCGCTGCATCGCCTG-AAAGTA
* * * *
23890786 AGATTCACCGTTGTGGCTTTAATATTTTGAATTGCAATGTCAGGGACGCAAGAGTCGCCGTTGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
23890851 ACTTCAATCTGTTCCGCTGCATCGCCTGAAAGTA
66 ACTTCAATCTGTTCCGCTGCATCGCCTGAAAGTA
* * ** *
23890885 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAAAGTCA-GGAAGTGAGATTTGCCGTTGT-
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
*
23890948 AGCTTTAATCTGTTCCGCTGCATCGCCTGAAAGTA
66 A-CTTCAATCTGTTCCGCTGCATCGCCTGAAAGTA
*
23890983 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCATTGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
*
23891048 ACTTCAATCTGTTCCGCTGC-TACG-CTAGGAAAGCA
66 ACTTCAATCTGTTCCGCTGCAT-CGCCT--GAAAGTA
* ** * *
23891083 AGATCCGCTATTGTAGCTTCAATCTTTTTAATTGCAA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAA
23891120 ACTATGGTTT
Statistics
Matches: 373, Mismatches: 50, Indels: 19
0.84 0.11 0.04
Matches are distributed among these distances:
97 2 0.01
98 130 0.35
99 160 0.43
100 80 0.21
101 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (99 bp):
AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
ACTTCAATCTGTTCCGCTGCATCGCCTGAAAGTA
Found at i:23890733 original size:49 final size:49
Alignment explanation
Indices: 23890588--23891057 Score: 268
Period size: 49 Copynumber: 9.5 Consensus size: 49
23890578 TAGGGAAATG
* * * * * *
23890588 AGATTCACCGCTGTGGCCTCAATCTTTTGAATTGCAATGTCAGGGACGCA
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCA-GGAAGTA
* * **** ** *
23890638 AGATTCGCCGTCGTGACTTCAATCTATTCCGCTGC-ATCACTTGGAAGTA
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTC-AGGAAGTA
* *
23890687 AGATTCGCCGTTGTGACTTCAATTTTTTGAATTGCAATGTCAGGAAGTG
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCAGGAAGTA
* * * * **** * * *
23890736 AGATTTGTCGTTGT-AGCTTTAATCTGTTCCGCTGC-ATCGCCTGAAAAGTA
1 AGATTCGCCGTTGTGA-CTTCAATCTTTTGAATTGCAAT-GTCAG-GAAGTA
* * * * * *
23890786 AGATTCACCGTTGTGGCTTTAATATTTTGAATTGCAATGTCAGGGACGCA
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCA-GGAAGTA
* * **** * * *
23890836 AGAGTCGCCGTTGTGACTTCAATCTGTTCCGCTGC-ATCGCCTGAAAGTA
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAAT-GTCAGGAAGTA
* * *
23890885 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAAAGTCAGGAAGTG
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCAGGAAGTA
* * * **** * * *
23890934 AGATTTGCCGTTGT-AGCTTTAATCTGTTCCGCTGC-ATCGCCTGAAAGTA
1 AGATTCGCCGTTGTGA-CTTCAATCTTTTGAATTGCAAT-GTCAGGAAGTA
* * *
23890983 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCA
1 AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCA-GGAAGTA
*
23891033 AGATTCGCCATTGTGACTTCAATCT
1 AGATTCGCCGTTGTGACTTCAATCT
23891058 GTTCCGCTGC
Statistics
Matches: 296, Mismatches: 109, Indels: 30
0.68 0.25 0.07
Matches are distributed among these distances:
48 4 0.01
49 171 0.58
50 118 0.40
51 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (49 bp):
AGATTCGCCGTTGTGACTTCAATCTTTTGAATTGCAATGTCAGGAAGTA
Found at i:23890792 original size:198 final size:197
Alignment explanation
Indices: 23890588--23891120 Score: 811
Period size: 198 Copynumber: 2.7 Consensus size: 197
23890578 TAGGGAAATG
* * *
23890588 AGATTCACCGCTGTGGCCTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTCGTG
1 AGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
* * * *
23890653 ACTTCAATCTATTCCGCTGCATCACTTGGAAGTAAGATTCGCCGTTGTGACTTCAATTTTTTGAA
66 ACTTCAATCTGTTCCGCTGCATCACCTGAAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTGAA
* *
23890718 TTGCAATGTCAGGAAGTGAGATTTGTCGTTGTAGCTTTAATCTGTTCCGCTGCATCGCCTGAAAA
131 TTGCAAAGTCAGGAAGTGAGATTTGCCGTTGTAGCTTTAATCTGTTCCGCTGCATCGCCTG-AAA
23890783 GTA
195 GTA
* * *
23890786 AGATTCACCGTTGTGGCTTTAATATTTTGAATTGCAATGTCAGGGACGCAAGAGTCGCCGTTGTG
1 AGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
* *
23890851 ACTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAA
66 ACTTCAATCTGTTCCGCTGCATCACCTGAAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTGAA
23890916 TTGCAAAGTCAGGAAGTGAGATTTGCCGTTGTAGCTTTAATCTGTTCCGCTGCATCGCCTGAAAG
131 TTGCAAAGTCAGGAAGTGAGATTTGCCGTTGTAGCTTTAATCTGTTCCGCTGCATCGCCTGAAAG
23890981 TA
196 TA
* *
23890983 AGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCATTGTG
1 AGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
* * **
23891048 ACTTCAATCTGTTCCGCTGC-T-ACGCTAGGAAAGCAAGATCCGCTATTGT-AGCTTCAATCTTT
66 ACTTCAATCTGTTCCGCTGCATCAC-CT--GAAAGTAAGATTCGCCGTTGTGA-CTTCAATCTTT
*
23891110 TTAATTGCAAA
127 TGAATTGCAAA
23891121 CTATGGTTTC
Statistics
Matches: 305, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
195 1 0.00
196 3 0.01
197 86 0.28
198 215 0.70
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (197 bp):
AGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGGACGCAAGATTCGCCGTTGTG
ACTTCAATCTGTTCCGCTGCATCACCTGAAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTGAA
TTGCAAAGTCAGGAAGTGAGATTTGCCGTTGTAGCTTTAATCTGTTCCGCTGCATCGCCTGAAAG
TA
Found at i:23896487 original size:27 final size:27
Alignment explanation
Indices: 23896445--23896499 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
23896435 CTTTCCCTTA
*
23896445 ATAACAGAGGTTGCATTTACGAACTCT
1 ATAACAGAGGTCGCATTTACGAACTCT
* *
23896472 ATAACAGATGTCGCATTTATGAACTCT
1 ATAACAGAGGTCGCATTTACGAACTCT
23896499 A
1 A
23896500 AGGATCGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (27 bp):
ATAACAGAGGTCGCATTTACGAACTCT
Found at i:23899662 original size:40 final size:40
Alignment explanation
Indices: 23899573--23899836 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
23899563 TTGAATGATG
* *
23899573 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
23899612 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
23899652 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23899691 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23899731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23899771 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23899812 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23899837 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23899854 original size:120 final size:118
Alignment explanation
Indices: 23899573--23899869 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
23899563 TTGAATGATG
* *
23899573 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
23899633 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
23899691 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
23899756 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
23899812 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
23899870 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:23905761 original size:30 final size:30
Alignment explanation
Indices: 23905727--23905786 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23905717 TTTGGTCCAC
23905727 GAAATCTAGAAAAACGGGTTCAGGAGTCGA
1 GAAATCTAGAAAAACGGGTTCAGGAGTCGA
*
23905757 GAAATCTAGAAAAACGGGTTCGGGAGTCGA
1 GAAATCTAGAAAAACGGGTTCAGGAGTCGA
23905787 TTACGTACGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.13, G:0.32, T:0.17
Consensus pattern (30 bp):
GAAATCTAGAAAAACGGGTTCAGGAGTCGA
Found at i:23906878 original size:15 final size:15
Alignment explanation
Indices: 23906858--23906913 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
23906848 ATGTAGAAAC
23906858 AATAATAATAACATT
1 AATAATAATAACATT
* *
23906873 AATAATAATAGCAAT
1 AATAATAATAACATT
* * *
23906888 AAAAACAATGAAC-TA
1 AATAATAAT-AACATT
23906903 AATAATAATAA
1 AATAATAATAA
23906914 TAAAAAAGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
14 2 0.06
15 27 0.87
16 2 0.06
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (15 bp):
AATAATAATAACATT
Found at i:23913922 original size:126 final size:125
Alignment explanation
Indices: 23913703--23914384 Score: 897
Period size: 126 Copynumber: 5.4 Consensus size: 125
23913693 AGCAAAATGA
* * * * * * * * * * * *
23913703 TTTATCAGAAGGATTTTTGAAGTTGCGCCCACGTGTACACGCTTTTGCTATAATAGGTCTTGGAA
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAA
23913768 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
66 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
* *
23913828 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTACTACAGTTGGTCCTGGAA
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAA
*
23913893 GAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
66 -AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
* *
23913954 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTACTACAGTTGGTCCTGGAA
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAA
* * *
23914019 GAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTAAAAAAAACGC-TCTAAGCAGGATGC
66 -AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTT-TAAAATACGCTTC-AAGCAGGATGC
* * * * *
23914081 TTTATAAGAA-AATTTTGTGAAATTGCGCCCACGTGGACGTGCTTTTGCTACAGTAT-GTCCTGA
1 TTTATGAGAAGAA-TTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT-TGGTCCTGG
* * * *
23914144 AAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAATGCTGCAAGCAGGATGC
64 AAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAA-TACGCTTCAAGCAGGATGC
* * * * * *
23914207 TATT-TGAGAAGAATTTGTGAAATCGTGCCCTTGTGGACGTGTTTTTGCTACAGTAGGTCTTGGA
1 T-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGA
* * *
23914271 AAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAT-CGCTTCTAGCAGGATGC
65 AAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
* *
23914331 TTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGT
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
23914385 AGCATGTTTG
Statistics
Matches: 497, Mismatches: 49, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
123 2 0.00
124 59 0.12
125 55 0.11
126 303 0.61
127 77 0.15
128 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (125 bp):
TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAA
AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
Found at i:23914278 original size:252 final size:252
Alignment explanation
Indices: 23913703--23914385 Score: 914
Period size: 253 Copynumber: 2.7 Consensus size: 252
23913693 AGCAAAATGA
* * * * * * * * * *
23913703 TTTATCAGAAGGATTTTTGAAGTTGCGCCCACGTGTACACGCTTTTGCTATAATAGGTCTTGGAA
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCTTGGAA
* *
23913768 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAATACGCT-TCAAGCAGGATGCTTTA
66 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAACGCTCT-AAGCAGGATGCTTTA
* * * *
23913832 TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTACTACAGT-TGGTCCTGGAAGAA
130 TGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTATGGTCCTGGAAAAA
* * * *
23913896 ATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAATACGCTTCAAGCAGGATGC
195 ATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCAGGATGC
* * * *
23913954 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTACTACAGTTGGTCCTGGAA
1 TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCTTGGAA
*
23914019 GAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTAAAAAAAACGCTCTAAGCAGGATGCTTT
66 -AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTT-AAAAAAACGCTCTAAGCAGGATGCTTT
* * *
23914084 ATAAGAA-AATTTTGTGAAATTGCGCCCACGTGGACGTGCTTTTGCTACAGTAT-GTCCT-GAAA
129 ATGAGAAGAA-TTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTATGGTCCTGGAAA
*
23914146 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAATGCTGCAAGCAGGATGC
193 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTGCAAGCAGGATGC
* * * *
23914207 TATT-TGAGAAGAATTTGTGAAATCGTGCCCTTGTGGACGTGTTTTTGCTACAGTAGGTCTTGGA
1 T-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCTTGGA
* * *
23914271 AAAATAATTTCGACTTGACGTTTCTGAGCAAATAG-TATAAAATCGCTTCT-AGCAGGATGCTTT
65 AAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAACGC-TCTAAGCAGGATGCTTT
*
23914334 ATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTA
129 ATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTA
23914386 GCATGTTTGG
Statistics
Matches: 378, Mismatches: 45, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
250 66 0.17
251 57 0.15
252 111 0.29
253 140 0.37
254 4 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (252 bp):
TTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCTTGGAA
AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAACGCTCTAAGCAGGATGCTTTAT
GAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTATGGTCCTGGAAAAAA
TAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCAGGATGC
Found at i:23917483 original size:22 final size:22
Alignment explanation
Indices: 23917452--23918024 Score: 581
Period size: 22 Copynumber: 26.8 Consensus size: 22
23917442 TAAAATTATA
23917452 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
23917474 TTTAATTTAAGGG-TTACAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917495 TTTAAGTTAAGTGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23917517 TTAAAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
23917537 TTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
23917558 TTTAATTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917579 TTTAAGGTT-----TTAAGGTTT
1 TTTAA-GTTAAGGGTTTAGGGTT
* ** * * * ** *
23917597 TTAAGTTAAGGGATTAGGGTT-
1 TTTAAGTTAAGGGTTTAGGGTT
**
23917618 TTTAAGTTAAGGGTTTAATGTT
1 TTTAAGTTAAGGGTTTAGGGTT
23917640 TTTAAGTTAATGGG-TTAGGGTT
1 TTTAAGTTAA-GGGTTTAGGGTT
* *
23917662 TTTAAGTTAGGGGTGTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917684 TTAAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
23917706 TTTAATTTAAGGG-TTACGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23917727 TTTAAGTTAA-GGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917748 TTAAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917769 TTTAAGTTAAGGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917791 TTTAAGTTAGGGGTGTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23917813 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
23917835 TTTAATTTAAGGG-TTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
23917856 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917878 TTAAAGTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
23917899 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917921 TTTAGGTTAAGAGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23917943 TTTAAGTTAAGAG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23917964 TTTAGGTTAAGGGTTTATTGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
23917986 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
23918008 TTTAAGTTAAGGGTTTA
1 TTTAAGTTAAGGGTTTA
23918025 AGTTTTGTCA
Statistics
Matches: 453, Mismatches: 78, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
17 6 0.01
18 4 0.01
20 15 0.03
21 172 0.38
22 251 0.55
23 5 0.01
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.45
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:23917517 original size:43 final size:44
Alignment explanation
Indices: 23917452--23918039 Score: 647
Period size: 43 Copynumber: 13.7 Consensus size: 44
23917442 TAAAATTATA
* * **
23917452 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGG-TTACAGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
23917495 TTTAAGTTAAGTGTTTAAGGTTTTAAAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
23917537 TTTAAGTTAAGGGTTT-AGGGTTTTAATTTAAGGGTTTAGGG--
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
23917578 -TT---TTAAGGTTTTAAGGTTTTTAAGTTAAGGGATTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
*
23917618 TTTAAGTTAAGGGTTTAATGTTTTTAAGTTAATGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAA-GGGTTTAGGGTT
* * * * *
23917662 TTTAAGTTAGGGGTGTAGGGTTTTAAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
23917706 TTTAATTTAAGGG-TTACGATTTTTAAGTTAA-GGTTTATGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
23917748 TTAAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
23917791 TTTAAGTTAGGGGTGTAGGGTTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
23917835 TTTAATTTAAGGG-TTATGATTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
23917878 TTAAAGTTAAGGG-TTATGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
23917921 TTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGAG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
23917964 TTTAGGTTAAGGGTTTATTGG-TTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTA-AGGTTTTTAAGTTAAGGGTTTAGGGTT
*
23918008 TTTAAGTTAAGGGTTTAA-GTTTTGTCAGTTAA
1 TTTAAGTTAAGGGTTTAAGGTTTT-TAAGTTAA
23918040 ATTATGCATT
Statistics
Matches: 468, Mismatches: 60, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
37 9 0.02
38 22 0.05
40 2 0.00
41 17 0.04
42 62 0.13
43 187 0.40
44 166 0.35
45 3 0.01
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (44 bp):
TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:23917530 original size:65 final size:64
Alignment explanation
Indices: 23917452--23918039 Score: 626
Period size: 65 Copynumber: 9.2 Consensus size: 64
23917442 TAAAATTATA
* ** *
23917452 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTACAGTTTTTAAGTTAAGTGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * *
23917517 TTAAAGTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAGGG-TTTTAATTTAAGGGTTT-AGGGT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* *
23917579 TTTAAGGTT-----TTAAGGTTTTTAAGTTAAGGGATTAGGGTTTTTAAGTTAAGGGTTTAATGT
1 TTTAA-GTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAAGGT
23917639 T
64 T
* * *
23917640 TTTAAGTTAATGGGTTAGGGTTTTTAAGTTAGGGGTGTAGGGTTTTAAAGTTAAGGGTTTATGGT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGT
23917705 T
64 T
* * * * * * * *
23917706 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGTTTATGGTTTTAAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23917769 TTTAAGTTAAGGGGTTAAGGTTTTTAAGTTAGGGGTGTAGGGTTTTAAAGTTAAGGGTTTAGGGT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGT
23917834 T
64 T
* * * * *
23917835 TTTAATTTAAGGGTTATGATTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23917899 TTTAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGAG-TTAGGGT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTTAAGGT
23917963 T
64 T
* *
23917964 TTTAGGTTAAGGGTTTATTGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAA-G
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAAGG
23918027 TT
63 TT
*
23918029 TTGTCAGTTAA
1 TT-TAAGTTAA
23918040 ATTATGCATT
Statistics
Matches: 447, Mismatches: 54, Indels: 43
0.82 0.10 0.08
Matches are distributed among these distances:
58 5 0.01
59 20 0.04
60 19 0.04
61 8 0.02
62 8 0.02
63 47 0.11
64 69 0.15
65 187 0.42
66 84 0.19
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (64 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
Found at i:23917601 original size:9 final size:8
Alignment explanation
Indices: 23917508--23917597 Score: 54
Period size: 8 Copynumber: 12.4 Consensus size: 8
23917498 AAGTTAAGTG
23917508 TTTAAGGT
1 TTTAAGGT
*
23917516 TTTAAAG-
1 TTTAAGGT
23917523 -TTAAGG-
1 TTTAAGGT
* *
23917529 GTTAGGGT
1 TTTAAGGT
23917537 TTTAA-G-
1 TTTAAGGT
*
23917543 -TTAAGGG
1 TTTAAGGT
*
23917550 TTTAGGGT
1 TTTAAGGT
23917558 TTTAA---
1 TTTAAGGT
*
23917563 TTTAAGGG
1 TTTAAGGT
*
23917571 TTTAGGGT
1 TTTAAGGT
23917579 TTTAAGGT
1 TTTAAGGT
23917587 TTTAAGGT
1 TTTAAGGT
23917595 TTT
1 TTT
23917598 TAAGTTAAGG
Statistics
Matches: 63, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
5 9 0.14
6 6 0.10
7 6 0.10
8 42 0.67
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (8 bp):
TTTAAGGT
Found at i:23918293 original size:21 final size:21
Alignment explanation
Indices: 23918269--23918315 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
23918259 TTGTCCAGCT
*
23918269 TCCGGCGGTGG-TTGTGGTTCC
1 TCCGGCGG-GGATTCTGGTTCC
*
23918290 TCCGGCGGGGATTCTGGTTCT
1 TCCGGCGGGGATTCTGGTTCC
23918311 TCCGG
1 TCCGG
23918316 TAGAACATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.02, C:0.26, G:0.40, T:0.32
Consensus pattern (21 bp):
TCCGGCGGGGATTCTGGTTCC
Found at i:23919183 original size:20 final size:20
Alignment explanation
Indices: 23919146--23919183 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23919136 TTTATTTTTA
*
23919146 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
23919166 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
23919184 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:23920163 original size:51 final size:51
Alignment explanation
Indices: 23920119--23920217 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 51
23920109 AATTATTTAA
23920119 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAGATT
* * * *
23920170 AAATATGGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAG
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAG
23920218 GAAATTGAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.27, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAGATT
Found at i:23920192 original size:11 final size:11
Alignment explanation
Indices: 23920178--23920241 Score: 64
Period size: 11 Copynumber: 5.9 Consensus size: 11
23920168 TTAAATATGG
23920178 ATTTGAGAGAA
1 ATTTGAGAGAA
*
23920189 ATTTG-GAAGGA
1 ATTTGAG-AGAA
23920200 ATTTGAGAGCAA
1 ATTTGAGAG-AA
23920212 A-TTGAG-GAA
1 ATTTGAGAGAA
23920221 A-TTGAGAGGAA
1 ATTTGAGA-GAA
23920232 ATTTGAGAGA
1 ATTTGAGAGA
23920242 GGATTAGTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
9 8 0.18
10 2 0.04
11 26 0.58
12 9 0.20
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:23920203 original size:22 final size:21
Alignment explanation
Indices: 23920178--23920236 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
23920168 TTAAATATGG
23920178 ATTTGAGAGAAATTTGGAAGGA
1 ATTTGAGAGAAATTTGG-AGGA
23920200 ATTTGAGAGCAAA-TT-GAGGA
1 ATTTGAGAG-AAATTTGGAGGA
*
23920220 AATTGAGAGGAAATTTG
1 ATTTGAGA-GAAATTTG
23920237 AGAGAGGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
20 14 0.44
21 4 0.12
22 11 0.34
23 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.31, T:0.27
Consensus pattern (21 bp):
ATTTGAGAGAAATTTGGAGGA
Found at i:23926001 original size:18 final size:18
Alignment explanation
Indices: 23925969--23926018 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
23925959 ATCACAAAAT
23925969 AATTTAAAACTTAAAAATCA
1 AATTT-AAAC-TAAAAATCA
*
23925989 AATTTAAACTAAAAATTA
1 AATTTAAACTAAAAATCA
23926007 AATTTAAACTAA
1 AATTTAAACTAA
23926019 TTATAGAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 20 0.69
19 4 0.14
20 5 0.17
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTTAAACTAAAAATCA
Found at i:23926600 original size:10 final size:10
Alignment explanation
Indices: 23926585--23926609 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23926575 TATTTGTATA
23926585 TTTTTTTAAT
1 TTTTTTTAAT
23926595 TTTTTTTAAT
1 TTTTTTTAAT
23926605 TTTTT
1 TTTTT
23926610 CAAACATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTAAT
Found at i:23926609 original size:19 final size:19
Alignment explanation
Indices: 23926555--23926592 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
23926545 ATATATACTT
*
23926555 TTATTTATATATTTTTTTA
1 TTATTTGTATATTTTTTTA
23926574 TTATTTGTATATTTTTTTA
1 TTATTTGTATATTTTTTTA
23926593 ATTTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (19 bp):
TTATTTGTATATTTTTTTA
Found at i:23929496 original size:18 final size:18
Alignment explanation
Indices: 23929470--23929515 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
23929460 ACTAGAATCC
23929470 AAAATTAAATTAAATAAAT-
1 AAAA-TAAATT-AATAAATG
*
23929489 AAAATAAATTACTAAATG
1 AAAATAAATTAATAAATG
23929507 AAAATAAAT
1 AAAATAAAT
23929516 GTGGGTTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 15 0.60
19 4 0.16
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAATAAATTAATAAATG
Found at i:23935482 original size:38 final size:37
Alignment explanation
Indices: 23935413--23935485 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
23935403 TTTTCATAAT
* *
23935413 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
23935450 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
23935486 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:23935516 original size:23 final size:22
Alignment explanation
Indices: 23935473--23935516 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
23935463 TTTCAAGTCA
23935473 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
23935496 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
23935517 TTAATTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:23935648 original size:23 final size:23
Alignment explanation
Indices: 23935615--23935690 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
23935605 ATAAGTGCCA
*
23935615 CACTGATATGTAGCCGAATCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
23935638 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
23935661 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
23935684 CACTGAT
1 CACTGAT
23935691 CAATAGCATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:23940429 original size:31 final size:31
Alignment explanation
Indices: 23940384--23940448 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
23940374 TAGATCTGAA
23940384 TTTTAAAAATTAAAA-ATTAAAAAAATTTAAAT
1 TTTTAAAAATTAAAATA-TAAAAAAA-TTAAAT
23940416 TTTTAAAAA-TAAAATATAAAAAAATTAAAT
1 TTTTAAAAATTAAAATATAAAAAAATTAAAT
23940446 TTT
1 TTT
23940449 AAATTTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
30 9 0.28
31 13 0.41
32 10 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
TTTTAAAAATTAAAATATAAAAAAATTAAAT
Found at i:23940437 original size:30 final size:32
Alignment explanation
Indices: 23940384--23940448 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
23940374 TAGATCTGAA
*
23940384 TTTTAAAAATTAAAAATTAAAAAAATTTAAAT
1 TTTTAAAAATTAAAAATTAAAAAAAATTAAAT
23940416 TTTTAAAAA-T-AAAA-TATAAAAAAATTAAAT
1 TTTTAAAAATTAAAAATTA-AAAAAAATTAAAT
23940446 TTT
1 TTT
23940449 AAATTTTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 2 0.06
30 19 0.61
31 1 0.03
32 9 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (32 bp):
TTTTAAAAATTAAAAATTAAAAAAAATTAAAT
Found at i:23941454 original size:18 final size:18
Alignment explanation
Indices: 23941431--23941474 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
23941421 AAAAAATTAG
23941431 GGTTTAAGGTTTGTTTAA
1 GGTTTAAGGTTTGTTTAA
23941449 GGTTTAAGGTTTGTTTAA
1 GGTTTAAGGTTTGTTTAA
*
23941467 GGTATAAG
1 GGTTTAAG
23941475 AAAAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (18 bp):
GGTTTAAGGTTTGTTTAA
Found at i:23947514 original size:17 final size:20
Alignment explanation
Indices: 23947492--23947530 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
23947482 CCGAGTGTTC
23947492 TTATTTTA-TTT-AT-TTAT
1 TTATTTTACTTTCATGTTAT
23947509 TTATTTTACTTTCATGTTAT
1 TTATTTTACTTTCATGTTAT
23947529 TT
1 TT
23947531 TAAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 3 0.16
19 2 0.11
20 6 0.32
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (20 bp):
TTATTTTACTTTCATGTTAT
Found at i:23958454 original size:40 final size:39
Alignment explanation
Indices: 23958423--23958632 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
23958413 GGACTAAGAT
* *
23958423 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
23958463 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
23958503 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
23958543 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
23958583 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
23958622 CCGAAGGCATT
1 CCGAAGGCATT
23958633 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:23958586 original size:120 final size:120
Alignment explanation
Indices: 23958370--23958632 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
23958360 TTGAATGCTG
* *
23958370 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
23958434 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
23958490 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
23958553 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
23958609 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23958633 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:23958652 original size:79 final size:80
Alignment explanation
Indices: 23958423--23958667 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
23958413 GGACTAAGAT
* * * * * * * ** *
23958423 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
23958486 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
23958503 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
23958568 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
23958583 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
23958647 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
23958661 CCGAAGG
1 CCGAAGG
23958668 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:23963591 original size:149 final size:149
Alignment explanation
Indices: 23963321--23963607 Score: 493
Period size: 149 Copynumber: 1.9 Consensus size: 149
23963311 AAGCAAGCGC
*
23963321 TTAAGTATCGGGATATTTGATAAGTGCTAAAAGTAACATGTTTTAATCTAACTCTTAATGCATTT
1 TTAAGTATCGGGATATTTGATAAATGCTAAAAGTAACATGTTTTAATCTAACTCTTAATGCATTT
* *
23963386 TTGGCTGATTATTCAATGTTAATGATAAATTTGATGCTTTTAATCCTTTAAATTCATGTTTTTAT
66 TTGGCTGATTATTCAATGTTAATGATAAATTCGATGCTTCTAATCCTTTAAATTCATGTTTTTAT
23963451 ACTTAGGAGAAACAAACGT
131 ACTTAGGAGAAACAAACGT
* * * *
23963470 TTAAGTGTGGGGATATTTGATAAATGCTAAAAGTAACATGTTTTAATCTAATTCTTAATGCGTTT
1 TTAAGTATCGGGATATTTGATAAATGCTAAAAGTAACATGTTTTAATCTAACTCTTAATGCATTT
* *
23963535 TTGGGTGATTATTCAATGTTAATGATAAATTCGATGCTTCTAATCCTTTAGATTCATGTTTTTAT
66 TTGGCTGATTATTCAATGTTAATGATAAATTCGATGCTTCTAATCCTTTAAATTCATGTTTTTAT
23963600 ACTTAGGA
131 ACTTAGGA
23963608 AAGCATTTGG
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
149 129 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (149 bp):
TTAAGTATCGGGATATTTGATAAATGCTAAAAGTAACATGTTTTAATCTAACTCTTAATGCATTT
TTGGCTGATTATTCAATGTTAATGATAAATTCGATGCTTCTAATCCTTTAAATTCATGTTTTTAT
ACTTAGGAGAAACAAACGT
Found at i:23980808 original size:59 final size:59
Alignment explanation
Indices: 23980739--23981077 Score: 438
Period size: 59 Copynumber: 5.8 Consensus size: 59
23980729 TGAAGAAACT
* * * * *
23980739 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTTAATTAA
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTAATTAA
*
23980798 TTAAATAAATAACCATATTTCATAATAATTCTATGAATAATTAATTTA-TTTTAGATTAA
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTA-ATTAA
* * * * * * *
23980857 TTAAAT-AATATTCTTATATCATAATAATTATACGAATAATTAATTAATTTTTGATTAA
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTAATTAA
**
23980915 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTCGATTAA
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTAATTAA
* * * * *
23980974 TTAAATAAATAATCATATTTTATGATAATTGTAGGAATAATTAATTTA-TTTT-A--GA
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTAATTAA
*
23981029 TTAAATAAATAATCATGTTTCATAATAATTCTATGAATAATTAATTTAT
1 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTAT
23981078 CTTCGGTTAA
Statistics
Matches: 244, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
55 44 0.18
57 1 0.00
58 53 0.22
59 146 0.60
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (59 bp):
TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTTAATTAA
Found at i:23980881 original size:117 final size:117
Alignment explanation
Indices: 23980739--23981077 Score: 524
Period size: 117 Copynumber: 2.9 Consensus size: 117
23980729 TGAAGAAACT
23980739 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTTAATTAATTAAAT
1 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTT-ATTAATTAAAT
*
23980804 AAATAACCATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAA
65 AAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAA
*
23980857 TTAAAT-AATATTCTTATATCATAATAATTATACGAATAATTAATTAATTTTTGATTAATTAAAT
1 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTT-ATTAATTAAAT
*
23980921 AAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTCGATTAA
65 AAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAA
* * * * * * * *
23980974 TTAAATAAATAATCATATTTTATGATAATTGTAGGAATAATTAATTTA-TTTTA--GATTAAATA
1 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTTATTAATTAAATA
*
23981036 AATAATCATGTTTCATAATAATTCTATGAATAATTAATTTAT
66 AATAATCATATTTCATAATAATTCTATGAATAATTAATTTAT
23981078 CTTCGGTTAA
Statistics
Matches: 206, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
114 49 0.24
116 1 0.00
117 117 0.57
118 39 0.19
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (117 bp):
TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTTATTAATTAAATA
AATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAA
Found at i:23981040 original size:176 final size:173
Alignment explanation
Indices: 23980739--23981115 Score: 485
Period size: 176 Copynumber: 2.2 Consensus size: 173
23980729 TGAAGAAACT
* * *
23980739 TTAAATAAATATTCTTATTTCATAATAATTATACGAATAATTAATTAATTTTTAATTAATTAAAT
1 TTAAATAAATAATCATATTTCATAATAATTATACGAATAATTAATTAATTTTCAATTAATTAAAT
* *
23980804 AAATAACCATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAT-AT
66 AAATAACCATATTTCATAATAATTCTAGGAATAATTAATTTATTTTAGATTAAATAAATAATCA-
*
23980868 TCTTATATCATAATAATTATACGAATAATTAATTAATTTTTGATTAA
130 T-GT-T-TCATAATAATTATACGAATAATTAATTAATTTTTGATTAA
* * * *
23980915 TTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAATTTATTTTCGATTAATTAAAT
1 TTAAATAAATAATCATATTTCATAATAATTATACGAATAATTAATTAATTTTCAATTAATTAAAT
* * * *
23980980 AAATAATCATATTTTATGATAATTGTAGGAATAATTAATTTATTTTAGATTAAATAAATAATCAT
66 AAATAACCATATTTCATAATAATTCTAGGAATAATTAATTTATTTTAGATTAAATAAATAATCAT
* * * * * *
23981045 GTTTCATAATAATTCTATGAATAATTAATTTATCTTCG----G
131 GTTTCATAATAATTATACGAATAATTAATTAATTTTTGATTAA
* *
23981084 TTAAATAAATGATCATATTTCATAATGATTAT
1 TTAAATAAATAATCATATTTCATAATAATTAT
23981116 CATAACTTAC
Statistics
Matches: 177, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
169 29 0.16
173 30 0.17
174 1 0.01
175 1 0.01
176 115 0.65
177 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (173 bp):
TTAAATAAATAATCATATTTCATAATAATTATACGAATAATTAATTAATTTTCAATTAATTAAAT
AAATAACCATATTTCATAATAATTCTAGGAATAATTAATTTATTTTAGATTAAATAAATAATCAT
GTTTCATAATAATTATACGAATAATTAATTAATTTTTGATTAA
Found at i:23986993 original size:66 final size:65
Alignment explanation
Indices: 23986881--23987014 Score: 180
Period size: 66 Copynumber: 2.0 Consensus size: 65
23986871 GCAAATTGCT
* * * * *
23986881 CAACTTAAAGCGGAGGCAGCATCGAGAGAAGCAGAGGCTCAAAGAAAATATGATGAACTCCAGCT
1 CAACTCAAAGCAGAGGCAGCAGCGAGAGAAACAGAGGC-CAAAGAAAATATGACGAACTCCAGCT
23986946 A
65 A
*
23986947 CAACTCAAAGCAGAGGTAGCAGCGAGAGAAACAGAGG-CAAGCAGAAAATATGACGAACTCCAGC
1 CAACTCAAAGCAGAGGCAGCAGCGAGAGAAACAGAGGCCAA--AGAAAATATGACGAACTCCAGC
23987011 TA
64 TA
23987013 CA
1 CA
23987015 GCTTCAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
64 3 0.05
66 57 0.95
ACGTcount: A:0.43, C:0.21, G:0.25, T:0.11
Consensus pattern (65 bp):
CAACTCAAAGCAGAGGCAGCAGCGAGAGAAACAGAGGCCAAAGAAAATATGACGAACTCCAGCTA
Found at i:23987368 original size:43 final size:43
Alignment explanation
Indices: 23987289--23987395 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
23987279 ACAAATGCCG
* * * * * ** *
23987289 CTAAAGAACATGACCTTTCGCGACATTTTTAGTAAAAGTGTCA
1 CTAAAGAACATGACATTTAGCGACACTGTTACTAAAAACGCCA
* * *
23987332 CTAAAGAACATGACATTTAGCGGCGCTGTTACTAAAAACGCCG
1 CTAAAGAACATGACATTTAGCGACACTGTTACTAAAAACGCCA
23987375 CTAAAGAACATGACATTTAGC
1 CTAAAGAACATGACATTTAGC
23987396 AGCGTTTTTA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (43 bp):
CTAAAGAACATGACATTTAGCGACACTGTTACTAAAAACGCCA
Found at i:23987884 original size:24 final size:25
Alignment explanation
Indices: 23987812--23987885 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
23987802 AATAATTTAC
* * **
23987812 AATGTTTTAATAAATTAAA-ATTAA
1 AATGTTGTAAGAAATTAAATATTTT
* *
23987836 AATGTTGTAAGAGATTTAATAATTTT
1 AATGTTGTAAGAAATTAAAT-ATTTT
23987862 AAT-TTGTAAGAAATTAAATATTTT
1 AATGTTGTAAGAAATTAAATATTTT
23987886 GGATAATTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 20 0.50
25 14 0.35
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.45
Consensus pattern (25 bp):
AATGTTGTAAGAAATTAAATATTTT
Found at i:23987987 original size:20 final size:20
Alignment explanation
Indices: 23987964--23988011 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
23987954 ATAATACTAC
* *
23987964 AAGAGATTCACTAATTTTGT
1 AAGAGATTCACTAAATTTGG
* * *
23987984 AAGAAATCCAGTAAATTTGG
1 AAGAGATTCACTAAATTTGG
23988004 AAGAGATT
1 AAGAGATT
23988012 GAGTTAATCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (20 bp):
AAGAGATTCACTAAATTTGG
Found at i:23988224 original size:21 final size:21
Alignment explanation
Indices: 23988181--23988238 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
23988171 GTTATAAAAG
*
23988181 ATTTTGGTAATTTTATTATTAAGGA
1 ATTTTAGTAA-TTT-TT-TTAA-GA
*
23988206 A-TTTAGTCATTTTTTTAAGA
1 ATTTTAGTAATTTTTTTAAGA
23988226 ATTTTAGTAATTT
1 ATTTTAGTAATTT
23988239 CGTACAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 3 0.10
21 14 0.48
22 2 0.07
23 3 0.10
24 6 0.21
25 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.55
Consensus pattern (21 bp):
ATTTTAGTAATTTTTTTAAGA
Found at i:23993159 original size:45 final size:45
Alignment explanation
Indices: 23993045--23993162 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
23993035 GTTGAAATAT
* *
23993045 GAGTAAGACCATAGCTGAAAGACAATATGACAGCACGAATCAAAC
1 GAGTAAGACAATAGCTGAAAGACACTATGACAGCACGAATCAAAC
* * * * *
23993090 GAGTAAGACTATAGCTAAAAGACACTATGGCATCACGACTCAAAC
1 GAGTAAGACAATAGCTGAAAGACACTATGACAGCACGAATCAAAC
* *
23993135 GTGTAAGACAATAGTTGAAAGACACTAT
1 GAGTAAGACAATAGCTGAAAGACACTAT
23993163 AACATTATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (45 bp):
GAGTAAGACAATAGCTGAAAGACACTATGACAGCACGAATCAAAC
Found at i:23994690 original size:40 final size:40
Alignment explanation
Indices: 23994592--23994854 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
23994582 TCCTCGTTCA
* * * * *
23994592 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23994631 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23994671 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23994711 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23994751 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
23994791 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23994831 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23994855 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23999935 original size:20 final size:20
Alignment explanation
Indices: 23999910--23999975 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
23999900 TTGATACGTG
23999910 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* *
23999930 CCCCTGTTTGTACATAC-GTG
1 CCCCTGTTTGTAC-TTCGGTA
* *
23999950 CCCCTATTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGGTA
23999970 CCCCTG
1 CCCCTG
23999976 AACACATTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 33 0.89
21 2 0.05
ACGTcount: A:0.14, C:0.33, G:0.17, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:24002646 original size:40 final size:39
Alignment explanation
Indices: 24002548--24002810 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
24002538 TCCTCGTTCA
* * * *
24002548 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
24002587 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
24002626 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
24002666 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
24002706 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
24002746 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
24002787 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24002811 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:24002770 original size:120 final size:119
Alignment explanation
Indices: 24002548--24002810 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
24002538 TCCTCGTTCA
* * *
24002548 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
24002613 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
24002666 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
24002731 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
24002787 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
24002811 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:24002819 original size:41 final size:41
Alignment explanation
Indices: 24002742--24002819 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24002732 TTTGTATCTC
* * *
24002742 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24002783 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24002820 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24010803 original size:40 final size:40
Alignment explanation
Indices: 24010499--24010790 Score: 387
Period size: 40 Copynumber: 7.3 Consensus size: 40
24010489 GCTCCTCGTT
* * * * * *
24010499 CAAATGCCTTCGGGACATAGCCCGG-TTTTAGTAACTCACA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
* * **
24010539 C-AATGCCTTCGGGACATAACCCGG-ATTTAACAAT-TCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTT--GTATCTCGCA
* * *
24010578 CGAATGCCTTCGGGACTTAACCCGG-ATTTACTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
*
24010618 CAAAGGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
24010658 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
24010698 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
24010738 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
24010778 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24010791 ATCTTAGTCC
Statistics
Matches: 235, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
39 34 0.14
40 197 0.84
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
Found at i:24010803 original size:120 final size:120
Alignment explanation
Indices: 24010573--24010843 Score: 379
Period size: 120 Copynumber: 2.3 Consensus size: 120
24010563 ATTTAACAAT
*
24010573 TCGCACGAATGCCTTCGGGACTTAACCCGGATTTACTATCTCGCACAAAGGCCTTCGGGGCTTAA
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTACTATCTCGCACAAAGGCCTTCGGGGCTTAA
*
24010638 CCCGGAATTTGTATCTCGCACAAATGCCTTCGGGGCTTAACCCGGAATTTGTATC
66 CCCGGAATTTGTATCTCGCACAAATGCCTTCGGAGCTTAACCCGGAATTTGTATC
* * *
24010693 TCGCACAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGGGGCTTA
1 TCGCACAAATGCCTTCGGGACTTAACCCGG-ATTTACTATCTCGCACAAAGGCCTTCGGGGCTTA
* ** *
24010757 ACCCGGAATTTGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATT-CA-C
65 ACCCGGAATTTGTATCTCGCACAAATGCCTTCGGAGCTTAACCCGGA-AT-TTGTATC
* *
24010813 TTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
24010844 CAGCATTCAA
Statistics
Matches: 135, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
119 1 0.01
120 117 0.87
121 15 0.11
122 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (120 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTACTATCTCGCACAAAGGCCTTCGGGGCTTAA
CCCGGAATTTGTATCTCGCACAAATGCCTTCGGAGCTTAACCCGGAATTTGTATC
Found at i:24010852 original size:41 final size:41
Alignment explanation
Indices: 24010775--24010852 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24010765 TTTGTATCTC
* * *
24010775 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24010816 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24010853 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24013895 original size:15 final size:15
Alignment explanation
Indices: 24013875--24013906 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24013865 CATTTCACTA
*
24013875 TTATGTTTTTTGTAT
1 TTATGTTTTTTATAT
24013890 TTATGTTTTTTATAT
1 TTATGTTTTTTATAT
24013905 TT
1 TT
24013907 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (15 bp):
TTATGTTTTTTATAT
Found at i:24015606 original size:17 final size:16
Alignment explanation
Indices: 24015578--24015609 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
24015568 TTAATTTAAT
24015578 ATTAAATTAATATTAG
1 ATTAAATTAATATTAG
24015594 ATTAAATTTAATATTA
1 ATTAAA-TTAATATTA
24015610 AAGTGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTAAATTAATATTAG
Found at i:24028478 original size:11 final size:11
Alignment explanation
Indices: 24028456--24028486 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
24028446 AGATATTGAC
24028456 GATGGAAGCGGA
1 GATGG-AGCGGA
24028468 GATGGAGCGGA
1 GATGGAGCGGA
24028479 GATGGAGC
1 GATGGAGC
24028487 TAAAGAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.29, C:0.10, G:0.52, T:0.10
Consensus pattern (11 bp):
GATGGAGCGGA
Found at i:24029817 original size:22 final size:22
Alignment explanation
Indices: 24029770--24029814 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
24029760 ATGCAATCTT
*
24029770 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCGTAGA
* *
24029792 AGATATGATTTTGTAATCGTAGA
1 AGATATGA-TATGCAATCGTAGA
24029815 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (22 bp):
AGATATGATATGCAATCGTAGA
Found at i:24045195 original size:257 final size:257
Alignment explanation
Indices: 24044739--24045235 Score: 742
Period size: 257 Copynumber: 1.9 Consensus size: 257
24044729 TGACCTACTG
* * * * * *
24044739 ACATATGATGAAACGATGCAGAGTGTTGATTCTAGGATTTGGGAAACAACTATGAAAGCTGAGAT
1 ACATATGATGAAACAATGCAGAGTGCTAATTCTAGGATCTGGGAAACAACTATAAAAGCTAAGAT
* * ** * *
24044804 GCACTCTATGCATTCCAACTCATTGTGGGGACTTGTATACTTACCAGAATGGATAAAACCCATAG
66 GCACTCTATGCATTCCAACTCAGTATGGAAACTTGTATACTTACCAGAAGGGATAAAACCCATAA
* * *
24044869 GGTGTAAGTAGATCTACAAGAGGAAAAGAGATGCGGATGGAAAAGTACAAACTTATAAGGACAGA
131 GGTGTAAGTAGATCTACAAGAGGAAAAGAAATACGGATGGAAAAGTAAAAACTTATAAGGACAGA
* *
24044934 CTTGTAGCAAATTGTTATACTCAGAAAGAACATATCGATTACGAAGAAATGATAACGCACTC
196 CTTGTAGCAAAATGTTATACTCAAAAAGAACATATCGATTACGAAGAAATGATAACGCACTC
* ** *
24044996 ACATATGATGAAATAATGCAGAGTGCTAATTCTAGTCTCTGGGAAATAACTATAAAAGCTAAGAT
1 ACATATGATGAAACAATGCAGAGTGCTAATTCTAGGATCTGGGAAACAACTATAAAAGCTAAGAT
* ** *
24045061 GGACTCTATTTATTCCAACTCAGTATGGAAACTTGTATACTTACTAGAAGGGATAAAACCCATAA
66 GCACTCTATGCATTCCAACTCAGTATGGAAACTTGTATACTTACCAGAAGGGATAAAACCCATAA
* *
24045126 GGTGTAAGTGGATCTACAAGAGGAAAAGAAATACGGATGGAAAAGTAAAAACTTATAATGACAGA
131 GGTGTAAGTAGATCTACAAGAGGAAAAGAAATACGGATGGAAAAGTAAAAACTTATAAGGACAGA
*
24045191 CTTGTAGCAAAATGTTATACTCAAAAATAACATATCGATTACGAA
196 CTTGTAGCAAAATGTTATACTCAAAAAGAACATATCGATTACGAA
24045236 TAAACTTTCT
Statistics
Matches: 212, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
257 212 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (257 bp):
ACATATGATGAAACAATGCAGAGTGCTAATTCTAGGATCTGGGAAACAACTATAAAAGCTAAGAT
GCACTCTATGCATTCCAACTCAGTATGGAAACTTGTATACTTACCAGAAGGGATAAAACCCATAA
GGTGTAAGTAGATCTACAAGAGGAAAAGAAATACGGATGGAAAAGTAAAAACTTATAAGGACAGA
CTTGTAGCAAAATGTTATACTCAAAAAGAACATATCGATTACGAAGAAATGATAACGCACTC
Found at i:24047598 original size:9 final size:10
Alignment explanation
Indices: 24047576--24047608 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
24047566 ATTGCATGTT
24047576 TGAATAGAAA
1 TGAATAGAAA
24047586 TGAATAG-AA
1 TGAATAGAAA
24047595 TGAATAGGAAA
1 TGAATA-GAAA
24047606 TGA
1 TGA
24047609 GAAATGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.38
10 8 0.38
11 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:24047927 original size:26 final size:26
Alignment explanation
Indices: 24047857--24047932 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
24047847 ACATGTTTTC
*
24047857 TCAAAATTTTACTAGGGGAAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
24047883 TCAAAATTTTACTAGGGGTAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* *
24047909 TCAAAATTTTACCAAGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
24047933 AGGGATGAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:24050882 original size:40 final size:40
Alignment explanation
Indices: 24050793--24051013 Score: 225
Period size: 40 Copynumber: 5.5 Consensus size: 40
24050783 CTCGTTCAAG
* * * **
24050793 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCACAAA
* *
24050832 TGCCTTCGGGACTTAACCCGGATTTAAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAA
* *
24050872 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAA
* *
24050912 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAA
** * * * *
24050952 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACAAA
*
24050993 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
24051014 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 31 0.20
40 112 0.73
41 11 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAA
Found at i:24050944 original size:80 final size:78
Alignment explanation
Indices: 24050793--24051013 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 78
24050783 CTCGTTCAAG
* ** * *
24050793 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAGCCCGGATT-TAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGAATT
*
24050857 AAAAACTCGCACGAA
64 AAAAACTCGCACAAA
*
24050872 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATT
*
24050937 AATAACTCGCACAAA
64 AAAAACTCGCACAAA
* * * *
24050952 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
24051014 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 33 0.27
80 80 0.65
81 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (78 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTAA
AAACTCGCACAAA
Found at i:24058802 original size:39 final size:40
Alignment explanation
Indices: 24058757--24058928 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
24058747 GCTCCTCGTT
* * *
24058757 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
24058797 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
24058836 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
24058876 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
24058916 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24058929 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:24058857 original size:40 final size:39
Alignment explanation
Indices: 24058759--24058981 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
24058749 TCCTCGTTCA
* * * *
24058759 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
24058798 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
24058837 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
24058877 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
24058917 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
24058958 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24058982 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:24058941 original size:80 final size:79
Alignment explanation
Indices: 24058757--24058981 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
24058747 GCTCCTCGTT
* * * * *
24058757 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
24058821 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
24058836 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
24058901 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
24058916 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
24058980 GA
63 GA
24058982 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:24058990 original size:41 final size:41
Alignment explanation
Indices: 24058913--24058990 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24058903 TTTGTATCTC
* * *
24058913 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24058954 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24058991 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24062550 original size:42 final size:42
Alignment explanation
Indices: 24062482--24062561 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
24062472 GATTATCCAT
24062482 CAAAATGTCTAATTGCAGAATCTATTTGTAATACAACTCCGC
1 CAAAATGTCTAATTGCAGAATCTATTTGTAATACAACTCCGC
* * * *
24062524 CAAAGTGTCTAATTTCAGAATGTATTTGTAATGCAACT
1 CAAAATGTCTAATTGCAGAATCTATTTGTAATACAACT
24062562 GTTCTCTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (42 bp):
CAAAATGTCTAATTGCAGAATCTATTTGTAATACAACTCCGC
Found at i:24064976 original size:26 final size:26
Alignment explanation
Indices: 24064940--24065010 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
24064930 TTTTCAATAG
24064940 TGCTCACACAAGCTGTGAAATGGGTC
1 TGCTCACACAAGCTGTGAAATGGGTC
*
24064966 TGCTTACACAAGCTGTGAAATGGGTC
1 TGCTCACACAAGCTGTGAAATGGGTC
*
24064992 TGCTCACACAAGCTATGAA
1 TGCTCACACAAGCTGTGAA
24065011 TCGATATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (26 bp):
TGCTCACACAAGCTGTGAAATGGGTC
Found at i:24066225 original size:12 final size:11
Alignment explanation
Indices: 24066208--24066264 Score: 64
Period size: 10 Copynumber: 5.2 Consensus size: 11
24066198 AACAAATCCT
24066208 CTCTCATATTTC
1 CTCTCA-ATTTC
24066220 CTCTCAA-TTC
1 CTCTCAATTTC
24066230 CTCTCAATTTC
1 CTCTCAATTTC
* *
24066241 CTTCTAAAATT-
1 C-TCTCAATTTC
24066252 CTCTCAATTTC
1 CTCTCAATTTC
24066263 CT
1 CT
24066265 TCCAAAATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 17 0.45
11 8 0.21
12 13 0.34
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:24066255 original size:22 final size:22
Alignment explanation
Indices: 24066207--24066280 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
24066197 AAACAAATCC
*
24066207 TCTCTCATATTTCC-TCT-CAAT
1 TCTCTCA-ATTTCCTTCTAAAAT
24066228 TCCTCTCAATTTCCTTCTAAAAT
1 T-CTCTCAATTTCCTTCTAAAAT
*
24066251 TCTCTCAATTTCCTTCCAAAAT
1 TCTCTCAATTTCCTTCTAAAAT
24066273 TCTCTCAA
1 TCTCTCAA
24066281 ATCCATATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.15
22 37 0.77
23 4 0.08
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.43
Consensus pattern (22 bp):
TCTCTCAATTTCCTTCTAAAAT
Found at i:24067451 original size:7 final size:7
Alignment explanation
Indices: 24067441--24067465 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24067431 ATTCGATTGA
24067441 TATTTAG
1 TATTTAG
24067448 TATTTAG
1 TATTTAG
24067455 TATTTAG
1 TATTTAG
24067462 TATT
1 TATT
24067466 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:24068126 original size:18 final size:18
Alignment explanation
Indices: 24068100--24068134 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24068090 AGGTGCGTTT
*
24068100 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
24068118 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
24068135 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:24068622 original size:25 final size:25
Alignment explanation
Indices: 24068588--24068699 Score: 130
Period size: 25 Copynumber: 4.7 Consensus size: 25
24068578 TATTTTGATA
24068588 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
24068613 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
** *
24068638 TT-TTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
24068656 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
24068682 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
24068700 ACCCTAACCT
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
18 1 0.01
19 3 0.04
20 8 0.11
21 3 0.04
23 3 0.04
24 8 0.11
25 45 0.62
26 1 0.01
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:24068624 original size:69 final size:69
Alignment explanation
Indices: 24068544--24068700 Score: 287
Period size: 69 Copynumber: 2.3 Consensus size: 69
24068534 TATTTCTATA
*
24068544 TTATTTTATGTAAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAG
1 TTATTTGATGTAAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAG
24068609 AAGT
66 AAGT
*
24068613 TTATTTGATGTAATAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAG
1 TTATTTGATGTAAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAG
24068678 AAGT
66 AAGT
24068682 TTATTTGATGTAATAAAAA
1 TTATTTGATGTAA-AAAAA
24068701 CCCTAACCTA
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
69 80 0.95
70 4 0.05
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (69 bp):
TTATTTGATGTAAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAG
AAGT
Found at i:24068725 original size:23 final size:23
Alignment explanation
Indices: 24068695--24068975 Score: 265
Period size: 23 Copynumber: 11.9 Consensus size: 23
24068685 TTTGATGTAA
24068695 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
24068718 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
24068741 TAACAACCCCAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* * *
24068764 GT-AAAACCTTAAACT--CTTAACT
1 -TAAAAACCCTAACCTAATTTAA-T
24068786 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
24068809 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T--AAA----AACCCTAACCTAATTTAAT
*
24068838 TAAAAACCCTAACCCCTTAACTTAA-
1 TAAAAACCCTAA--CC-TAATTTAAT
*
24068863 -AAACCCTAACCTTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
*
24068889 TAAAAATCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
24068912 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
24068934 T-AAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
24068956 TAAAAACCCTAACCTAATTT
1 TAAAAACCCTAACCTAATTT
24068976 TACATAATTT
Statistics
Matches: 214, Mismatches: 18, Indels: 52
0.75 0.06 0.18
Matches are distributed among these distances:
20 4 0.02
21 17 0.08
22 16 0.07
23 111 0.52
24 12 0.06
25 12 0.06
26 9 0.04
27 6 0.03
28 7 0.03
29 20 0.09
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:24068827 original size:29 final size:29
Alignment explanation
Indices: 24068790--24068928 Score: 153
Period size: 29 Copynumber: 5.2 Consensus size: 29
24068780 TTAACTTAAA
24068790 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
24068819 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
24068848 AA-CC---CC----TTAACTTAAAAACCCT
1 AACCCTAACCTAATTTAA-TTAAAAACCCT
*
24068870 AACCTTAACCTAATTTAATTAAAAA---T
1 AACCCTAACCTAATTTAATTAAAAACCCT
24068896 ---CCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
24068922 AAACCCT
1 -AACCCT
24068929 TAACTTAAAA
Statistics
Matches: 92, Mismatches: 2, Indels: 31
0.74 0.02 0.25
Matches are distributed among these distances:
21 4 0.04
22 13 0.14
23 22 0.24
25 2 0.02
26 4 0.04
28 2 0.02
29 38 0.41
30 7 0.08
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
AACCCTAACCTAATTTAATTAAAAACCCT
Found at i:24068860 original size:74 final size:71
Alignment explanation
Indices: 24068713--24068975 Score: 321
Period size: 74 Copynumber: 3.7 Consensus size: 71
24068703 CTAACCTAAT
* *
24068713 TTAA-TTAAAAACCCTAACCTAATTTAATT---AACAACCCCAACCTAATTTAATGT-AAAACCT
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACAACCCTAACCTAATTTAAT-TAAAAACCC
*
24068773 TAAACTC
65 TAAACCC
24068780 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAA--C-AACCCTAACCTAATTTAATTAAAAAC
*
24068845 CCTAACCCC
63 CCTAAACCC
** *
24068854 TTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA-AATCCTAACCTAATTTAATTAAAAA
1 TTAACTTAAAAACCCTAACC-TAATTTAA-TTAA--AAACAACCCTAACCTAATTTAATTAAAAA
24068918 CCCTAAACCC
62 CCCTAAACCC
24068928 TTAACTT-AAAACCCTAACCTAATTTAATT--AAA-AACCCTAACCTAATTT
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACAACCCTAACCTAATTT
24068976 TACATAATTT
Statistics
Matches: 173, Mismatches: 11, Indels: 24
0.83 0.05 0.12
Matches are distributed among these distances:
67 22 0.13
68 25 0.14
71 4 0.02
72 6 0.03
73 14 0.08
74 89 0.51
75 6 0.03
76 4 0.02
78 3 0.02
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (71 bp):
TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACAACCCTAACCTAATTTAATTAAAAACCCT
AAACCC
Found at i:24072391 original size:122 final size:124
Alignment explanation
Indices: 24072172--24072521 Score: 517
Period size: 122 Copynumber: 2.8 Consensus size: 124
24072162 CCCAAACATG
*
24072172 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTTAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
24072237 TAGAAGCGATTTTATATTATTTGCTTAGAAACGTCAAAAA-AATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAATAATTATTTCTTACATGAC
* * * *
24072295 CTACTGTAGCAAAAGCG-AGCTGACGA-GTCGTGATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCATC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
24072358 CTAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTC--AAAAATAATTATTTCTTACATGAC
* * *
24072420 CTACTGTAGGAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCCAATAGCATGCTGC
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
24072485 TAGAAGCGATTTTATACTATTTTATCAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
24072522 CTCGAAATTA
Statistics
Matches: 201, Mismatches: 20, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
122 69 0.34
123 21 0.10
124 7 0.03
125 36 0.18
126 68 0.34
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAATAATTATTTCTTACATGAC
Found at i:24072496 original size:126 final size:125
Alignment explanation
Indices: 24072172--24072521 Score: 519
Period size: 126 Copynumber: 2.8 Consensus size: 125
24072162 CCCAAACATG
*
24072172 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTTAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
24072237 TAGAAGCGATTTTATATTATTTGCTTAGAAACGTC--AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
* * * *
24072295 CTACTGTAGCAAAAGCG-AGCTGACGA-GTCGTGATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCATC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
24072358 CTAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAA-AATTATTTCTTACATGAC
* * *
24072420 CTACTGTAGGAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCCAATAGCATGCTGC
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
24072485 TAGAAGCGATTTTATACTATTTTATCAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
24072522 CTCGAAATTA
Statistics
Matches: 201, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
122 69 0.34
123 21 0.10
124 5 0.02
125 36 0.18
126 70 0.35
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
Found at i:24083946 original size:22 final size:23
Alignment explanation
Indices: 24083898--24083946 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
24083888 TATTGGTATG
24083898 ATTAATGTGTCCTAATAAGTAGT
1 ATTAATGTGTCCTAATAAGTAGT
* *
24083921 -TTAATGTGTCTTAATAGGT-GT
1 ATTAATGTGTCCTAATAAGTAGT
24083942 ATTAA
1 ATTAA
24083947 AGAAGCAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (23 bp):
ATTAATGTGTCCTAATAAGTAGT
Found at i:24089408 original size:23 final size:23
Alignment explanation
Indices: 24089382--24089429 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
24089372 TCGAATATTC
24089382 CTCCTTTCTCCCCTCTCATTTTG
1 CTCCTTTCTCCCCTCTCATTTTG
24089405 CTCCTTTCTCCCCTCTCATTTTG
1 CTCCTTTCTCCCCTCTCATTTTG
24089428 CT
1 CT
24089430 ATTGAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.04, C:0.44, G:0.04, T:0.48
Consensus pattern (23 bp):
CTCCTTTCTCCCCTCTCATTTTG
Found at i:24090473 original size:27 final size:25
Alignment explanation
Indices: 24090432--24090548 Score: 126
Period size: 27 Copynumber: 4.4 Consensus size: 25
24090422 CGTGGGGTTA
*
24090432 GTAAAATAACTAAAATACCCTGAAAGG
1 GTAAAATGAC-AAAATACCCTG-AAGG
* **
24090459 ATAAAATGATCAAAATACCCCCAAAGG
1 GTAAAATGA-CAAAATA-CCCTGAAGG
24090486 GTAAAATGACCAAAATACCCTCGAAGG
1 GTAAAATGA-CAAAATACCCT-GAAGG
24090513 GTAAAATGACTAAAATACCCCTGAAGG
1 GTAAAATGAC-AAAATA-CCCTGAAGG
24090540 GTAAAATGA
1 GTAAAATGA
24090549 ATGCTATAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.05
27 65 0.84
28 8 0.10
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.17
Consensus pattern (25 bp):
GTAAAATGACAAAATACCCTGAAGG
Found at i:24090518 original size:54 final size:54
Alignment explanation
Indices: 24090432--24090548 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 54
24090422 CGTGGGGTTA
* *
24090432 GTAAAATAACTAAAATACCCTGAAAGGATAAAATGA-TCAAAATACCCCCAAAGG
1 GTAAAATGACCAAAATACCCTGAAAGGATAAAATGACT-AAAATACCCCCAAAGG
* **
24090486 GTAAAATGACCAAAATACCCTCG-AAGGGTAAAATGACTAAAATACCCCTGAAGG
1 GTAAAATGACCAAAATACCCT-GAAAGGATAAAATGACTAAAATACCCCCAAAGG
24090540 GTAAAATGA
1 GTAAAATGA
24090549 ATGCTATAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.17
Consensus pattern (54 bp):
GTAAAATGACCAAAATACCCTGAAAGGATAAAATGACTAAAATACCCCCAAAGG
Found at i:24090752 original size:26 final size:26
Alignment explanation
Indices: 24090723--24090794 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
24090713 ATACTATTTT
24090723 TGGCAGCTTTGCTGCGATACTGA-TAC
1 TGGCAGCTTTGCTGCGATACT-ACTAC
* * *
24090749 TGGCAGCTCTACTGTGATACTACTAC
1 TGGCAGCTTTGCTGCGATACTACTAC
* *
24090775 TGGTAGCTTTGCTGCAATAC
1 TGGCAGCTTTGCTGCGATAC
24090795 AGGTGTGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATACTACTAC
Found at i:24098199 original size:27 final size:26
Alignment explanation
Indices: 24098169--24098256 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 26
24098159 TTGGGGTCAA
24098169 TAAAATGACCAAAATACCCCCAAATGG
1 TAAAATGACCAAAATACCCCCAAA-GG
*
24098196 TAAAATGACCAAAATACTCCCGAAAGG
1 TAAAATGACCAAAATAC-CCCCAAAGG
* *
24098223 TAAAATGACCGAAATACCCCTAAAGGG
1 TAAAATGACCAAAATACCCCCAAA-GG
24098250 TAAAATG
1 TAAAATG
24098257 GTTGTTATAC
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 6 0.11
27 44 0.79
28 6 0.11
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.16
Consensus pattern (26 bp):
TAAAATGACCAAAATACCCCCAAAGG
Found at i:24098460 original size:26 final size:26
Alignment explanation
Indices: 24098422--24098502 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
24098412 TGTAGGAAGT
* * * *
24098422 ATACTGTTTCTGGCAGCTTTACTTCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
24098448 ATACTGATACTGGTAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
24098474 ATGCT-ACTACTGGCAGCTTTGCTGCG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
24098500 ATA
1 ATA
24098503 TAGGTGTACT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:24105601 original size:20 final size:19
Alignment explanation
Indices: 24105576--24105632 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
24105566 ATAAGCAACC
*
24105576 AACAAATTCAAAATAAATTA
1 AACAAATTAAAAATAAA-TA
*
24105596 AACAAA-TAAAAATAGATA
1 AACAAATTAAAAATAAATA
24105614 AACAAGAATTAAAAATAAA
1 AAC-A-AATTAAAAATAAA
24105633 AGAAATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 8 0.26
21 9 0.29
ACGTcount: A:0.70, C:0.07, G:0.04, T:0.19
Consensus pattern (19 bp):
AACAAATTAAAAATAAATA
Found at i:24116600 original size:24 final size:23
Alignment explanation
Indices: 24116560--24116606 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
24116550 AAACAACCTG
24116560 AAAAATTATAAAGAAATTAAACAA
1 AAAAATTATAAAGAAA-TAAACAA
*
24116584 AAAAATTA-AAATTAAATAAACAA
1 AAAAATTATAAA-GAAATAAACAA
24116607 TTTTTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAAATTATAAAGAAATAAACAA
Found at i:24120186 original size:21 final size:21
Alignment explanation
Indices: 24120161--24120200 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24120151 TATATTATGA
* *
24120161 AATATTTAAAAAGATTATACT
1 AATATATAAAAACATTATACT
*
24120182 AATATATAAATACATTATA
1 AATATATAAAAACATTATA
24120201 ATTAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (21 bp):
AATATATAAAAACATTATACT
Found at i:24120850 original size:2 final size:2
Alignment explanation
Indices: 24120843--24120881 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
24120833 CAGTTCGAAG
24120843 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24120882 ACATAACAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24126505 original size:25 final size:25
Alignment explanation
Indices: 24126441--24126534 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 25
24126431 TCATGTACAT
* *
24126441 GTATTCTCATACGAGCTGT-GAATCG
1 GTATGCTCACACGAGCTGTAG-ATCG
* *
24126466 GTATACTCACTCGAGCTGTAGATCG
1 GTATGCTCACACGAGCTGTAGATCG
* * * *
24126491 GTATGCTCTCACGAGTTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCG
* *
24126516 GTATGCTTACATGAGCTGT
1 GTATGCTCACACGAGCTGT
24126535 GGTGTATCTA
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
25 53 0.98
26 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAGATCG
Found at i:24132318 original size:20 final size:20
Alignment explanation
Indices: 24132290--24132330 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
24132280 AACAACAAAG
* * *
24132290 TTTTGAAGGTAATAACTTTT
1 TTTTAAAGGGAATAAATTTT
24132310 TTTTAAAGGGAATAAATTTT
1 TTTTAAAGGGAATAAATTTT
24132330 T
1 T
24132331 AAATCACGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (20 bp):
TTTTAAAGGGAATAAATTTT
Found at i:24144217 original size:27 final size:27
Alignment explanation
Indices: 24144185--24144309 Score: 105
Period size: 27 Copynumber: 4.6 Consensus size: 27
24144175 TTTTGTTTAC
** *
24144185 AAAATTACTGAAATACCCTCGGTTTGT
1 AAAATTACTGAAATACCCTCAATTTGG
* * *
24144212 AAAATTACCGAAATACCCTTAATTTTTG
1 AAAATTACTGAAATACCCTCAA-TTTGG
*
24144240 -AAATTAC-CAAAGTACCC-CTAATTTGG
1 AAAATTACTGAAA-TACCCTC-AATTTGG
* *
24144266 AATATTA-TCGAAATACCCTCAGTTTGG
1 AAAATTACT-GAAATACCCTCAATTTGG
24144293 AAAATTACTGAAATACC
1 AAAATTACTGAAATACC
24144310 TTTATAGGGT
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
26 7 0.09
27 62 0.81
28 8 0.10
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCAATTTGG
Done.