Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 77 of 161
Found at i:24144827 original size:27 final size:27
Alignment explanation
Indices: 24144777--24144828 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
24144767 TACTGATATG
*
24144777 GTATTGGGCTAAGGCCCACCTTGTTTT
1 GTATTGGGCTAAGGCCCACATTGTTTT
* *
24144804 GTATTGGGCTATGGCCCATATTGTT
1 GTATTGGGCTAAGGCCCACATTGTT
24144829 CTATTCTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
GTATTGGGCTAAGGCCCACATTGTTTT
Found at i:24147655 original size:23 final size:22
Alignment explanation
Indices: 24147603--24147655 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
24147593 TCCACGTCTT
*
24147603 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
24147625 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
24147648 TTTCTTTT
1 TTTCTTTT
24147656 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:24152862 original size:14 final size:15
Alignment explanation
Indices: 24152836--24152871 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
24152826 TATTTATTAT
24152836 TTATTTTTAATTTTC
1 TTATTTTTAATTTTC
*
24152851 TT-TTTTTTATTTTC
1 TTATTTTTAATTTTC
24152865 TTATTTT
1 TTATTTT
24152872 GCTAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.81
Consensus pattern (15 bp):
TTATTTTTAATTTTC
Found at i:24153711 original size:49 final size:49
Alignment explanation
Indices: 24153654--24153747 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
24153644 TGCTATGCAA
* *
24153654 TGCTAAACTTGGTCTTCCACTATCTACACTCTTATCACTATTTATACAT
1 TGCTAAACTTAGTATTCCACTATCTACACTCTTATCACTATTTATACAT
*
24153703 TGCTAAACTTAGTATTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTAGTATTCCACTATCTACACTCTTATCACTATTTAT
24153748 CCCTTCTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.06, T:0.41
Consensus pattern (49 bp):
TGCTAAACTTAGTATTCCACTATCTACACTCTTATCACTATTTATACAT
Found at i:24155480 original size:189 final size:189
Alignment explanation
Indices: 24155160--24155531 Score: 618
Period size: 189 Copynumber: 2.0 Consensus size: 189
24155150 TTCAATACAA
* * *
24155160 AAAAAAATACAATGCGTAGCATAAACCAATAACATTCGAATATGTCCTGTACATGATGCAATGCA
1 AAAAAAATACAATGCATAGCATAAACCAATAACATTCGAATATGTCATGCACATGATGCAATGCA
* * *
24155225 AAAAGGTTCCTACCCATAACATTCGCTACACACCACGAGTTACTCAGATTTCGTCTGTCAAACTC
66 AAAAGGTTCCCACCCATAACATCCGCTACACACCACGAGTTACTCAGATTTCGTCTGCCAAACTC
**
24155290 CAAAACATTATGAGCATAGCTCGATGTGGTAAAATGACTAAATAATCAATAATACGTAC
131 CAAAACATTATGAGCATAGCTCGATGTGGTAAAACCACTAAATAATCAATAATACGTAC
* *
24155349 AAAAAAATACAATGCATAGCATAAATCAATAACATTCGAATATGTCATGCACATGATGCAATGGA
1 AAAAAAATACAATGCATAGCATAAACCAATAACATTCGAATATGTCATGCACATGATGCAATGCA
* * *
24155414 AAAAGGTTCCCACCCATACCATCCGCTACACACCACGAGTTCCTTAGATTTCGTCTGCCAAACTC
66 AAAAGGTTCCCACCCATAACATCCGCTACACACCACGAGTTACTCAGATTTCGTCTGCCAAACTC
*
24155479 CAAAACATTATGAGCATAGCTCGATGTGGTAAAACCACTGAATAATCAATAAT
131 CAAAACATTATGAGCATAGCTCGATGTGGTAAAACCACTAAATAATCAATAAT
24155532 GTAGAAAATA
Statistics
Matches: 169, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
189 169 1.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.24
Consensus pattern (189 bp):
AAAAAAATACAATGCATAGCATAAACCAATAACATTCGAATATGTCATGCACATGATGCAATGCA
AAAAGGTTCCCACCCATAACATCCGCTACACACCACGAGTTACTCAGATTTCGTCTGCCAAACTC
CAAAACATTATGAGCATAGCTCGATGTGGTAAAACCACTAAATAATCAATAATACGTAC
Found at i:24159574 original size:16 final size:17
Alignment explanation
Indices: 24159555--24159587 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
24159545 CTTCTTCTCC
24159555 TTTTCTTTC-TTTCTTT
1 TTTTCTTTCTTTTCTTT
24159571 TTTTCTTTCTTTTCTTT
1 TTTTCTTTCTTTTCTTT
24159588 GTTTAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTCTTTCTTTTCTTT
Found at i:24159575 original size:12 final size:13
Alignment explanation
Indices: 24159554--24159587 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
24159544 GCTTCTTCTC
24159554 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
24159567 CTTTT-TTTCTTT
1 CTTTTCTTTCTTT
24159579 CTTTTCTTT
1 CTTTTCTTT
24159588 GTTTAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:24170040 original size:23 final size:23
Alignment explanation
Indices: 24169979--24170056 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
24169969 ATTCTTCGTT
*
24169979 AACATGTTCAATTATATGTTCATG
1 AACATGTTCGATTA-ATGTTCATG
* *
24170003 AACATGTTCGTTTAATGTTCGTG
1 AACATGTTCGATTAATGTTCATG
* * *
24170026 CACATGTTTGATTAA-GTTAAATG
1 AACATGTTCGATTAATGTT-CATG
24170049 AACATGTT
1 AACATGTT
24170057 TATGAACATT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
22 3 0.07
23 29 0.66
24 12 0.27
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.41
Consensus pattern (23 bp):
AACATGTTCGATTAATGTTCATG
Found at i:24171044 original size:42 final size:42
Alignment explanation
Indices: 24170981--24171110 Score: 113
Period size: 42 Copynumber: 3.1 Consensus size: 42
24170971 GACCGTGTGG
* * * * **
24170981 GAGGGTCTTGATCGTGCGACTGGGGTACACT-CCTGTGTGACT
1 GAGGGTCTAGACCGTGTGACTGGGGCACA-TGCCCATGTGACT
24171023 GAGGGTCTAGACCGTGTGACTGGGGCACATGCCCATGTGACT
1 GAGGGTCTAGACCGTGTGACTGGGGCACATGCCCATGTGACT
* * * * *
24171065 GAGGGAC-ACGGCCGTGTGACTGAGAG-ACACGCCCATGTAACT
1 GAGGGTCTA-GACCGTGTGACTG-GGGCACATGCCCATGTGACT
24171107 GAGG
1 GAGG
24171111 TATACAGCTG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 70 0.95
43 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.36, T:0.21
Consensus pattern (42 bp):
GAGGGTCTAGACCGTGTGACTGGGGCACATGCCCATGTGACT
Found at i:24171082 original size:21 final size:21
Alignment explanation
Indices: 24170993--24171110 Score: 89
Period size: 21 Copynumber: 5.6 Consensus size: 21
24170983 GGGTCTTGAT
* *
24170993 CGTGCGACTG-GGGTACACTCC
1 CGTGTGACTGAGGG-ACACGCC
* * *
24171014 TGTGTGACTGAGGGTCTA-GAC
1 CGTGTGACTGAGGGAC-ACGCC
*
24171035 CGTGTGACTG-GGGCACATGCC
1 CGTGTGACTGAGGG-ACACGCC
* *
24171056 CATGTGACTGAGGGACACGGC
1 CGTGTGACTGAGGGACACGCC
*
24171077 CGTGTGACTGAGAGACACGCC
1 CGTGTGACTGAGGGACACGCC
* *
24171098 CATGTAACTGAGG
1 CGTGTGACTGAGG
24171111 TATACAGCTG
Statistics
Matches: 75, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
20 4 0.05
21 64 0.85
22 7 0.09
ACGTcount: A:0.20, C:0.25, G:0.36, T:0.19
Consensus pattern (21 bp):
CGTGTGACTGAGGGACACGCC
Found at i:24171251 original size:21 final size:22
Alignment explanation
Indices: 24171206--24171252 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
24171196 TGGCTGAATA
*
24171206 ACAC-ACCTATGTGACAGAGGC
1 ACACGACCTATGTGACAGAAGC
24171227 ACACGACC-ATGTGACTAGAAG-
1 ACACGACCTATGTGAC-AGAAGC
24171248 ACACG
1 ACACG
24171253 TTTGTGAGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.13
Consensus pattern (22 bp):
ACACGACCTATGTGACAGAAGC
Found at i:24179778 original size:26 final size:26
Alignment explanation
Indices: 24179730--24179814 Score: 134
Period size: 26 Copynumber: 3.2 Consensus size: 26
24179720 AGTTAATAAA
24179730 TTCTCTTTGAGTTTTTCTTTTGAAGAAT
1 TTCTC-TTGAG-TTTTCTTTTGAAGAAT
24179758 TTCTCTTGAGTTTTCTTTTGAAGAAT
1 TTCTCTTGAGTTTTCTTTTGAAGAAT
*
24179784 TTCTCTTGAGTTTTCTTTTAGAAGAGT
1 TTCTCTTGAGTTTTCTTTT-GAAGAAT
24179811 TTCT
1 TTCT
24179815 AAAAATCTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
26 35 0.64
27 15 0.27
28 5 0.09
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.55
Consensus pattern (26 bp):
TTCTCTTGAGTTTTCTTTTGAAGAAT
Found at i:24183974 original size:51 final size:50
Alignment explanation
Indices: 24183870--24184021 Score: 236
Period size: 51 Copynumber: 3.0 Consensus size: 50
24183860 TGTAATATGT
* * *
24183870 TTAGTTTAATTAATTCAGTTGTTTT-AATTTTCTTTCGTTGCTTAAATAA
1 TTAGTTTAATTAATTAAGTTGTTTTCAGTTTTCTTTAGTTGCTTAAATAA
*
24183919 TTAGTTTAATTAATTAAGTTGTTTTTCAGTTTTCTTTAGTTGCTTAAATAC
1 TTAGTTTAATTAATTAAGTTG-TTTTCAGTTTTCTTTAGTTGCTTAAATAA
24183970 TTAGTTTAATTAATTAAGTTGCTTTTCAGTTTT-TTTAGTTGCTTAAATAA
1 TTAGTTTAATTAATTAAGTTG-TTTTCAGTTTTCTTTAGTTGCTTAAATAA
24184020 TT
1 TT
24184022 CCGGCATTTA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 20 0.21
50 22 0.23
51 53 0.56
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.55
Consensus pattern (50 bp):
TTAGTTTAATTAATTAAGTTGTTTTCAGTTTTCTTTAGTTGCTTAAATAA
Found at i:24185338 original size:21 final size:21
Alignment explanation
Indices: 24185293--24185355 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
24185283 TTTCAACCAT
* *
24185293 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
24185315 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
24185336 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
24185356 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:24186658 original size:27 final size:27
Alignment explanation
Indices: 24186620--24186678 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
24186610 GTATCATTTG
*
24186620 GTATCAGAGATAGTGAAATTGAAGTAA
1 GTATCAAAGATAGTGAAATTGAAGTAA
24186647 GTATCAAAGATAGTGAAATTGAAGTAA
1 GTATCAAAGATAGTGAAATTGAAGTAA
24186674 GTATC
1 GTATC
24186679 GATGTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.24, T:0.27
Consensus pattern (27 bp):
GTATCAAAGATAGTGAAATTGAAGTAA
Found at i:24190243 original size:51 final size:49
Alignment explanation
Indices: 24190097--24190245 Score: 228
Period size: 50 Copynumber: 3.0 Consensus size: 49
24190087 TTTAATATGT
* *
24190097 TTAGTTTAATTAATTCAATTGTTTT-AATTTTCTTTGGTTGCTTAAATAC
1 TTAGTTTAATTAATT-AATTGTTTTCAGTTTTCTTTAGTTGCTTAAATAC
*
24190146 TTAGTTTAATTAATTAAATTATTTTCAGTTTTCTTTAGTTGCTTAAATAC
1 TTAGTTTAATTAATT-AATTGTTTTCAGTTTTCTTTAGTTGCTTAAATAC
24190196 TTAGTTTAATTAATTAAGTTGTTTTTCAGTTTTCTTTAGTTGCTTAAATA
1 TTAGTTTAATTAATTAA-TTG-TTTTCAGTTTTCTTTAGTTGCTTAAATA
24190246 ATTTTGCAAT
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
49 25 0.27
50 39 0.42
51 28 0.30
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (49 bp):
TTAGTTTAATTAATTAATTGTTTTCAGTTTTCTTTAGTTGCTTAAATAC
Found at i:24196283 original size:14 final size:14
Alignment explanation
Indices: 24196264--24196293 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24196254 TTCATATCGT
24196264 AGGTTTAGGGTTTA
1 AGGTTTAGGGTTTA
24196278 AGGTTTAGGGTTTA
1 AGGTTTAGGGTTTA
24196292 AG
1 AG
24196294 AGTAAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
AGGTTTAGGGTTTA
Found at i:24199462 original size:15 final size:15
Alignment explanation
Indices: 24199426--24199462 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
24199416 TTAAAATAAT
24199426 AAAG-AAAATAAAAG
1 AAAGAAAAATAAAAG
24199440 -AAGTAAAAATAAAAG
1 AAAG-AAAAATAAAAG
24199455 AAAGAAAA
1 AAAGAAAA
24199463 CATTAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 3 0.15
15 14 0.70
16 3 0.15
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (15 bp):
AAAGAAAAATAAAAG
Found at i:24209502 original size:17 final size:17
Alignment explanation
Indices: 24209477--24209509 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24209467 GAGGGGGCCT
*
24209477 AATAGGATATCTTCTAC
1 AATAAGATATCTTCTAC
24209494 AATAAGATATCTTCTA
1 AATAAGATATCTTCTA
24209510 ATTTGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.36
Consensus pattern (17 bp):
AATAAGATATCTTCTAC
Found at i:24210703 original size:10 final size:10
Alignment explanation
Indices: 24210688--24210712 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24210678 AACTTCTAAG
24210688 AAATTATAAT
1 AAATTATAAT
24210698 AAATTATAAT
1 AAATTATAAT
24210708 AAATT
1 AAATT
24210713 CTAAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTATAAT
Found at i:24218682 original size:235 final size:235
Alignment explanation
Indices: 24218271--24218741 Score: 942
Period size: 235 Copynumber: 2.0 Consensus size: 235
24218261 CCGAGGAAGA
24218271 ATTGTGCACACTTTAAAAATCCTACTAACACAAGAAACAATAAGGTGTTAGATAGTGTGAAGGGA
1 ATTGTGCACACTTTAAAAATCCTACTAACACAAGAAACAATAAGGTGTTAGATAGTGTGAAGGGA
24218336 TAATAAAGGCAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTACTGAAATCGAAAAAC
66 TAATAAAGGCAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTACTGAAATCGAAAAAC
24218401 CTGAAAAACTGCGGAGTAACTTGAAAACTTCGTTCGAGGTGTTCCCGATCTCCAAAAAACACAAA
131 CTGAAAAACTGCGGAGTAACTTGAAAACTTCGTTCGAGGTGTTCCCGATCTCCAAAAAACACAAA
24218466 ATTAAATTTGGAATGTCTTTAAATATTGAATTTTTTATCT
196 ATTAAATTTGGAATGTCTTTAAATATTGAATTTTTTATCT
24218506 ATTGTGCACACTTTAAAAATCCTACTAACACAAGAAACAATAAGGTGTTAGATAGTGTGAAGGGA
1 ATTGTGCACACTTTAAAAATCCTACTAACACAAGAAACAATAAGGTGTTAGATAGTGTGAAGGGA
24218571 TAATAAAGGCAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTACTGAAATCGAAAAAC
66 TAATAAAGGCAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTACTGAAATCGAAAAAC
24218636 CTGAAAAACTGCGGAGTAACTTGAAAACTTCGTTCGAGGTGTTCCCGATCTCCAAAAAACACAAA
131 CTGAAAAACTGCGGAGTAACTTGAAAACTTCGTTCGAGGTGTTCCCGATCTCCAAAAAACACAAA
24218701 ATTAAATTTGGAATGTCTTTAAATATTGAATTTTTTATCT
196 ATTAAATTTGGAATGTCTTTAAATATTGAATTTTTTATCT
24218741 A
1 A
24218742 GAAAGTTTGG
Statistics
Matches: 236, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
235 236 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (235 bp):
ATTGTGCACACTTTAAAAATCCTACTAACACAAGAAACAATAAGGTGTTAGATAGTGTGAAGGGA
TAATAAAGGCAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTACTGAAATCGAAAAAC
CTGAAAAACTGCGGAGTAACTTGAAAACTTCGTTCGAGGTGTTCCCGATCTCCAAAAAACACAAA
ATTAAATTTGGAATGTCTTTAAATATTGAATTTTTTATCT
Found at i:24221011 original size:29 final size:30
Alignment explanation
Indices: 24220962--24221032 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
24220952 GTTCGCTCAT
* * *
24220962 TAAGGG-TCACACATTAGGGTTCACTCACC
1 TAAGGGTTCGCACATCAGGGTTCACACACC
**
24220991 T-AGGGTTCGCACATCAGGGTTTGCACACC
1 TAAGGGTTCGCACATCAGGGTTCACACACC
24221020 TAAGGGTTCGCAC
1 TAAGGGTTCGCAC
24221033 GGATGGGTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 4 0.11
29 20 0.57
30 11 0.31
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (30 bp):
TAAGGGTTCGCACATCAGGGTTCACACACC
Found at i:24221101 original size:14 final size:14
Alignment explanation
Indices: 24221084--24221156 Score: 51
Period size: 14 Copynumber: 5.1 Consensus size: 14
24221074 TCTCACATGT
24221084 GGGTTCACACTTAG
1 GGGTTCACACTTAG
*
24221098 GGG-TCACACCTAG
1 GGGTTCACACTTAG
* *
24221111 TGGTTCACTCATTAG
1 GGGTTCACAC-TTAG
* *
24221126 GGATTGCAC-CTAAG
1 GGGTT-CACACTTAG
*
24221140 GGGTTCTCACATTAG
1 GGGTTCACAC-TTAG
24221155 GG
1 GG
24221157 TGCACACACC
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
13 13 0.30
14 16 0.36
15 12 0.27
16 3 0.07
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (14 bp):
GGGTTCACACTTAG
Found at i:24221172 original size:29 final size:29
Alignment explanation
Indices: 24221140--24221200 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
24221130 TGCACCTAAG
* *
24221140 GGGTTCTCACATTAGGGTGCACACACCTA
1 GGGTTCGCACACTAGGGTGCACACACCTA
* * *
24221169 GGGTTGGCACACTAGTGTTCACACACCTA
1 GGGTTCGCACACTAGGGTGCACACACCTA
24221198 GGG
1 GGG
24221201 GTTCACGTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (29 bp):
GGGTTCGCACACTAGGGTGCACACACCTA
Found at i:24221245 original size:27 final size:28
Alignment explanation
Indices: 24221192--24221249 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
24221182 AGTGTTCACA
* *
24221192 CACCTAGGGGTTCACGTAGATTGGTTCG
1 CACCTAGGGGTTCACATAGAATGGTTCG
24221220 CACCTA-GGGTTCACATA-AATGAGTTCG
1 CACCTAGGGGTTCACATAGAATG-GTTCG
24221247 CAC
1 CAC
24221250 ATGTGAAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 3 0.11
27 18 0.67
28 6 0.22
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (28 bp):
CACCTAGGGGTTCACATAGAATGGTTCG
Found at i:24222910 original size:80 final size:79
Alignment explanation
Indices: 24222826--24222997 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
24222816 GGACTAAGAT
*
24222826 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
24222890 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
24222906 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
24222971 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
24222985 CCGAAGGCATTTG
1 CCGAAGGCATTTG
24222998 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:24222977 original size:39 final size:39
Alignment explanation
Indices: 24222773--24222995 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
24222763 TTGAATGCTG
* * * * *
24222773 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
24222813 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
24222852 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
24222893 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
24222933 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
24222972 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24222996 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:24223015 original size:79 final size:80
Alignment explanation
Indices: 24222853--24223030 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
24222843 AGATACAAAT
* * * *
24222853 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
24222918 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
24222933 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
24222997 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
24223012 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24223031 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:24223962 original size:14 final size:13
Alignment explanation
Indices: 24223911--24223962 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
24223901 TTCACACACA
24223911 GGCTCGCACACTAG
1 GGCTCGCACA-TAG
*
24223925 GGTTCGCACATA-
1 GGCTCGCACATAG
* *
24223937 GGCTTGCTCATAGG
1 GGCTCGCACATA-G
24223951 GGCTCGCACATA
1 GGCTCGCACATA
24223963 CAGTTCTCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 9 0.30
13 2 0.07
14 19 0.63
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (13 bp):
GGCTCGCACATAG
Found at i:24227899 original size:11 final size:11
Alignment explanation
Indices: 24227883--24227919 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
24227873 CAAATACATT
24227883 AAATAAATTTA
1 AAATAAATTTA
*
24227894 AAATAAA-TAA
1 AAATAAATTTA
24227904 AAATAAATTTA
1 AAATAAATTTA
24227915 AAATA
1 AAATA
24227920 TAATACATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATAAATTTA
Found at i:24227908 original size:21 final size:22
Alignment explanation
Indices: 24227883--24227924 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
24227873 CAAATACATT
24227883 AAATAAATTTAAAATA-AATAA
1 AAATAAATTTAAAATATAATAA
24227904 AAATAAATTTAAAATATAATA
1 AAATAAATTTAAAATATAATA
24227925 CATCAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATAAATTTAAAATATAATAA
Found at i:24228131 original size:22 final size:22
Alignment explanation
Indices: 24228106--24228161 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
24228096 TAACAACAAT
* *
24228106 ATAATAACAATATAATAGCGAA
1 ATAATAACAAAATAATAGAGAA
*
24228128 ATAATAGCAAAATAATAGAGAA
1 ATAATAACAAAATAATAGAGAA
* *
24228150 ATGACAACAAAA
1 ATAATAACAAAA
24228162 CAATTAATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (22 bp):
ATAATAACAAAATAATAGAGAA
Found at i:24228145 original size:11 final size:11
Alignment explanation
Indices: 24228106--24228145 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
24228096 TAACAACAAT
* *
24228106 ATAATAACAAT
1 ATAATAGCAAA
*
24228117 ATAATAGCGAA
1 ATAATAGCAAA
24228128 ATAATAGCAAA
1 ATAATAGCAAA
24228139 ATAATAG
1 ATAATAG
24228146 AGAAATGACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.23
Consensus pattern (11 bp):
ATAATAGCAAA
Found at i:24228809 original size:27 final size:26
Alignment explanation
Indices: 24228779--24228855 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
24228769 TTCTTAAAAA
*
24228779 AATTATATATAGAGGAAAATATATCAT
1 AATTATATATA-ATGAAAATATATCAT
* *
24228806 AATTAGATAT-ATGAAAATATAAACAT
1 AATTATATATAATGAAAATAT-ATCAT
*
24228832 -ATTATATATACATGCAAATATATC
1 AATTATATATA-ATGAAAATATATC
24228856 TCAATCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 17 0.41
26 6 0.15
27 18 0.44
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (26 bp):
AATTATATATAATGAAAATATATCAT
Found at i:24228835 original size:25 final size:25
Alignment explanation
Indices: 24228793--24228841 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
24228783 ATATATAGAG
*
24228793 GAAAATATATCATAATTAGATATAT
1 GAAAATATAACATAATTAGATATAT
*
24228818 GAAAATATAAACAT-ATTATATATA
1 GAAAATAT-AACATAATTAGATATA
24228842 CATGCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
GAAAATATAACATAATTAGATATAT
Found at i:24230700 original size:20 final size:21
Alignment explanation
Indices: 24230651--24230701 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
24230641 ACCTTTTAGA
*
24230651 ATTTTTAAAGTTTATGTTATT
1 ATTTTTAAAATTTATGTTATT
24230672 -TTTTATAAAATTATAT-TT-TT
1 ATTTT-TAAAATT-TATGTTATT
24230692 ATTTTTAAAA
1 ATTTTTAAAA
24230702 AATATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 11 0.42
21 12 0.46
22 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (21 bp):
ATTTTTAAAATTTATGTTATT
Found at i:24232155 original size:74 final size:75
Alignment explanation
Indices: 24232045--24232197 Score: 299
Period size: 74 Copynumber: 2.1 Consensus size: 75
24232035 ATTGACATAC
24232045 ATTGATCCGGTGCTGACCCAATGTTGATCGATGACCAGACGTTGACTAGATGTTGATCAACA-TG
1 ATTGATCCGGTGCTGACCCAATGTTGATCGATGACCAGACGTTGACTAGATGTTGATCAACATTG
24232109 ATTGATGTTG
66 ATTGATGTTG
24232119 ATTGATCCGGTGCTGACCCAATGTTGATCGATGACCAGACGTTGACTAGATGTTGATCAACATTG
1 ATTGATCCGGTGCTGACCCAATGTTGATCGATGACCAGACGTTGACTAGATGTTGATCAACATTG
24232184 ATTGATGTTG
66 ATTGATGTTG
24232194 ATTG
1 ATTG
24232198 GATGTTGATC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 62 0.79
75 16 0.21
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (75 bp):
ATTGATCCGGTGCTGACCCAATGTTGATCGATGACCAGACGTTGACTAGATGTTGATCAACATTG
ATTGATGTTG
Found at i:24232312 original size:28 final size:28
Alignment explanation
Indices: 24232281--24232343 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
24232271 TAATTTTTTA
24232281 AAAATTTAAGAATATTTTTATTATTATT
1 AAAATTTAAGAATATTTTTATTATTATT
* * * *
24232309 AAAATTTCATAATATTTTTTTTATTTTT
1 AAAATTTAAGAATATTTTTATTATTATT
*
24232337 GAAATTT
1 AAAATTT
24232344 TAACTATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (28 bp):
AAAATTTAAGAATATTTTTATTATTATT
Found at i:24232629 original size:32 final size:32
Alignment explanation
Indices: 24232568--24232629 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
24232558 AACTTGAGTA
** *
24232568 ACCAATTTGTATAACGGATGCTAAACTTAATG
1 ACCAATTTGTATAACAAATGCCAAACTTAATG
* *
24232600 ACCAATTTGTATAATAAATGCCAACCTTAA
1 ACCAATTTGTATAACAAATGCCAAACTTAA
24232630 GGATTGATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (32 bp):
ACCAATTTGTATAACAAATGCCAAACTTAATG
Found at i:24245579 original size:28 final size:28
Alignment explanation
Indices: 24245532--24245655 Score: 131
Period size: 28 Copynumber: 4.4 Consensus size: 28
24245522 GGCATTACTA
* * * *
24245532 TAAATATGGAAGCCCGTTAGGACAATCG
1 TAAATGTGGAAGTCCATTAGGACAATCT
* *
24245560 TAAATCTGGAAGTCTATTAGGACAATCT
1 TAAATGTGGAAGTCCATTAGGACAATCT
* * *
24245588 TAAATGTGAAAATCCATTAGGACGATCT
1 TAAATGTGGAAGTCCATTAGGACAATCT
* * * *
24245616 TAAATGTGGTAGTCCGTCAGGACGATCT
1 TAAATGTGGAAGTCCATTAGGACAATCT
24245644 TAAATGTGGAAG
1 TAAATGTGGAAG
24245656 CCTATCAAGA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 80 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (28 bp):
TAAATGTGGAAGTCCATTAGGACAATCT
Found at i:24245670 original size:28 final size:28
Alignment explanation
Indices: 24245560--24245753 Score: 112
Period size: 28 Copynumber: 7.0 Consensus size: 28
24245550 AGGACAATCG
* * * * *
24245560 TAAATCTGGAAGTCTATTAGGACAATCT
1 TAAATGTGGAAGTCCATCAAGACGATCT
* * * *
24245588 TAAATGTGAAAATCCATTAGGACGATCT
1 TAAATGTGGAAGTCCATCAAGACGATCT
* * *
24245616 TAAATGTGGTAGTCCGTCAGGACGATCT
1 TAAATGTGGAAGTCCATCAAGACGATCT
*
24245644 TAAATGTGGAAG-CCTATCAAGATGATCT
1 TAAATGTGGAAGTCC-ATCAAGACGATCT
* * * *
24245672 T-AATGTGGAAAGTTCACCAAGGCTATCT
1 TAAATGTGG-AAGTCCATCAAGACGATCT
** *
24245700 T-AATGTGGAAAACCCATCAAGACTATCT
1 TAAATGTGG-AAGTCCATCAAGACGATCT
* *
24245728 CT---TGTGGAAGTCCATAAAGACTATCT
1 -TAAATGTGGAAGTCCATCAAGACGATCT
24245754 AACATGGGAA
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 16 0.12
27 14 0.10
28 103 0.76
29 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (28 bp):
TAAATGTGGAAGTCCATCAAGACGATCT
Found at i:24246124 original size:61 final size:61
Alignment explanation
Indices: 24246049--24246173 Score: 241
Period size: 61 Copynumber: 2.0 Consensus size: 61
24246039 GAAATCCATT
24246049 ACTATGTGCGAGTTATCTATGTATGTGGAACCATATTTGAAAGAAATAATAGTCCACCACG
1 ACTATGTGCGAGTTATCTATGTATGTGGAACCATATTTGAAAGAAATAATAGTCCACCACG
*
24246110 ACTATGTGCGAGTTATCTATGTATGTGGAACCATATTTGAAAGAAATATTAGTCCACCACG
1 ACTATGTGCGAGTTATCTATGTATGTGGAACCATATTTGAAAGAAATAATAGTCCACCACG
24246171 ACT
1 ACT
24246174 GCATCATATG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (61 bp):
ACTATGTGCGAGTTATCTATGTATGTGGAACCATATTTGAAAGAAATAATAGTCCACCACG
Found at i:24248739 original size:37 final size:37
Alignment explanation
Indices: 24248698--24248774 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
24248688 TAGTTTTGAG
24248698 TAGTTTAAAGGTTGAGAATCAGTCATAGGTGGATAAT
1 TAGTTTAAAGGTTGAGAATCAGTCATAGGTGGATAAT
24248735 TAGTTTAAAGGTTGAGAATCAGTCATAGGTGGATAAT
1 TAGTTTAAAGGTTGAGAATCAGTCATAGGTGGATAAT
24248772 TAG
1 TAG
24248775 ACAAACTGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (37 bp):
TAGTTTAAAGGTTGAGAATCAGTCATAGGTGGATAAT
Found at i:24250616 original size:23 final size:22
Alignment explanation
Indices: 24250573--24250616 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
24250563 TTCCAAGTCA
24250573 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
24250596 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
24250617 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:24250847 original size:51 final size:52
Alignment explanation
Indices: 24250790--24250976 Score: 197
Period size: 51 Copynumber: 3.7 Consensus size: 52
24250780 CGGTTTACAC
* *
24250790 AGTAGCCTACACATAGTACTACACATGTGACCATCA-CTATCAGATACACGT
1 AGTAGCCTACACATAGTACTACACACGTGACCATCAGCTATCAGGTACACGT
* * * * * *
24250841 AGTAGCCTGCACATAGTACTACACACGTGA--TTGAAGCTATCCGGTACGCAT
1 AGTAGCCTACACATAGTACTACACACGTGACCAT-CAGCTATCAGGTACACGT
* * * * * *
24250892 AGTAGCCTGCACATAGTACTACACATGCGACC-T-ATCTTTCTGGTACACGT
1 AGTAGCCTACACATAGTACTACACACGTGACCATCAGCTATCAGGTACACGT
24250942 AGTAG-CTACACATAGTACTACACACGTGACCATCA
1 AGTAGCCTACACATAGTACTACACACGTGACCATCA
24250977 CTTTCACTTT
Statistics
Matches: 112, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
49 24 0.21
50 19 0.17
51 68 0.61
52 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (52 bp):
AGTAGCCTACACATAGTACTACACACGTGACCATCAGCTATCAGGTACACGT
Found at i:24251235 original size:30 final size:30
Alignment explanation
Indices: 24251201--24251264 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
24251191 CATTGACTCG
* *
24251201 AACTTTTCCAAAATTATAATTTTGCCCCTA
1 AACTTTTCCAAAATTACAATTTTGCCCCAA
* * * *
24251231 AACTTTTGCATATTTACACTTTTGCCCCAA
1 AACTTTTCCAAAATTACAATTTTGCCCCAA
24251261 AACT
1 AACT
24251265 CGAAAATTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AACTTTTCCAAAATTACAATTTTGCCCCAA
Found at i:24257165 original size:57 final size:57
Alignment explanation
Indices: 24257077--24257226 Score: 221
Period size: 57 Copynumber: 2.6 Consensus size: 57
24257067 TTTGCATATG
* * *
24257077 TATGCATGATATGTATGTGGCTTAGAGGAGGTTCGGATTGTCATACATGGGATTGAA
1 TATGCATTATATTTATGTGGCTTTGAGGAGGTTCGGATTGTCATACATGGGATTGAA
* * *
24257134 TATGCATTATATTTATGTGGCTTTGAAGAGGTTCAGATTGTCATACATGGGATTGCA
1 TATGCATTATATTTATGTGGCTTTGAGGAGGTTCGGATTGTCATACATGGGATTGAA
*
24257191 TTTGCA-TATATTTATGTGGCTTTGAGGGAGGTTCGG
1 TATGCATTATATTTATGTGGCTTTGA-GGAGGTTCGG
24257227 TTGGACTAAG
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 19 0.23
57 64 0.77
ACGTcount: A:0.24, C:0.09, G:0.29, T:0.37
Consensus pattern (57 bp):
TATGCATTATATTTATGTGGCTTTGAGGAGGTTCGGATTGTCATACATGGGATTGAA
Found at i:24257420 original size:28 final size:28
Alignment explanation
Indices: 24257380--24257479 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
24257370 GGCATTATCA
*
24257380 TAAATGTGGAAGTCCCTCAGGATGATCT
1 TAAATGTGGAAGTCCGTCAGGATGATCT
* ** *
24257408 TAAATGTGGAAGTCCGTCAGTACCATTT
1 TAAATGTGGAAGTCCGTCAGGATGATCT
* *
24257436 TAAATGTGGAAGTCTGTTAGGATGATCT
1 TAAATGTGGAAGTCCGTCAGGATGATCT
24257464 T-AATGTGGAAAGTCCG
1 TAAATGTGG-AAGTCCG
24257480 CCATGAATAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 7 0.12
28 52 0.88
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
TAAATGTGGAAGTCCGTCAGGATGATCT
Found at i:24257533 original size:28 final size:28
Alignment explanation
Indices: 24257460--24257535 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
24257450 TGTTAGGATG
**
24257460 ATCTTAATGTGGAAAGTCCGCCATGAAT
1 ATCTTAATGTGGAAAGTTTGCCATGAAT
* *
24257488 ATCTTAATATGGAAAGTTTTCCATGAAT
1 ATCTTAATGTGGAAAGTTTGCCATGAAT
*
24257516 ATGTTAATGTGGAAAGTTTG
1 ATCTTAATGTGGAAAGTTTG
24257536 TAAGGACTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (28 bp):
ATCTTAATGTGGAAAGTTTGCCATGAAT
Found at i:24264332 original size:86 final size:84
Alignment explanation
Indices: 24264201--24264514 Score: 380
Period size: 86 Copynumber: 3.6 Consensus size: 84
24264191 ATTTGTTTTG
* *
24264201 GGATTTATTCCTGCCGTTCAACGGATTTTATT-CATTTTTTGATTTTATTTCCAAATGAGAATTA
1 GGATTTATTCC-GCCGTTCAACAGATTTTATTCCA-TTTTTGATTTTATTTCCAAACGAGAATTA
*
24264265 AAGTTAAATAAAATCTGTTTC
64 AAGTTAAATAAAATCTATTTC
*
24264286 GAGATTTATTCTCGCCGTTCAACAGATTTTATTCCATTTTTTATTTTATTTCCAAACGAGAATTA
1 G-GATTTATTC-CGCCGTTCAACAGATTTTATTCCATTTTTGATTTTATTTCCAAACGAGAATTA
* * *
24264351 AAGTTAAATAAATTTTTTTTC
64 AAGTTAAATAAAATCTATTTC
* *
24264372 GGGATTTATTCCCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTGTTTCCAAAACGAGAAAT
1 -GGATTTATT-CCGCCGTTCAACAGATTTTATTCCATTTTTGATTTTATTTCC-AAACGAG-AAT
*
24264437 TAAAATTAAATAAAATCTATTTC
62 TAAAGTTAAATAAAATCTATTTC
** * * * *
24264460 TGGATTTATTCACATCGTTTAACAAATTTTATTCGA-TTTTGATTTTGTTTCCAAA
1 -GGATTTATTC-CGCCGTTCAACAGATTTTATTCCATTTTTGATTTTATTTCCAAA
24264515 TTAGAAAATT
Statistics
Matches: 202, Mismatches: 19, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
85 1 0.00
86 122 0.60
87 29 0.14
88 50 0.25
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (84 bp):
GGATTTATTCCGCCGTTCAACAGATTTTATTCCATTTTTGATTTTATTTCCAAACGAGAATTAAA
GTTAAATAAAATCTATTTC
Found at i:24264516 original size:79 final size:78
Alignment explanation
Indices: 24264433--24264593 Score: 209
Period size: 79 Copynumber: 2.0 Consensus size: 78
24264423 CCAAAACGAG
*
24264433 AAATT-AAAATTAAATAAAATCTATTTCTGGATTTATTCAC-ATCGTTTAACAAATTTTATTCGA
1 AAATTAAAAATTAAAT--AATCTATTTCGGGATTTATTCACGAT-GTTTAACAAATTTTATTCGA
*
24264496 TTTTGATTTTGTTTCC
63 TCTTGATTTTGTTTCC
* * * **
24264512 AAATTAGAAAATTGAATAATCTGTTTCGGGATTTATTCCCGATGTTTAACTGATTTTATTCGATC
1 AAATTA-AAAATTAAATAATCTATTTCGGGATTTATTCACGATGTTTAACAAATTTTATTCGATC
24264577 TTGATTTTGTTTCC
65 TTGATTTTGTTTCC
24264591 AAA
1 AAA
24264594 CAAAGACATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
79 61 0.85
80 2 0.03
81 9 0.12
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (78 bp):
AAATTAAAAATTAAATAATCTATTTCGGGATTTATTCACGATGTTTAACAAATTTTATTCGATCT
TGATTTTGTTTCC
Found at i:24269194 original size:5 final size:5
Alignment explanation
Indices: 24269184--24269208 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24269174 AATACAAATG
24269184 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
24269209 TATAAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:24274885 original size:22 final size:21
Alignment explanation
Indices: 24274838--24274885 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
24274828 CTAAAATGAC
*
24274838 CATACCAAAATCACATTCAAA
1 CATACCAAAATCACATTAAAA
* **
24274859 TATACCAAAATGGTCATTAAAA
1 CATACCAAAAT-CACATTAAAA
24274881 CATAC
1 CATAC
24274886 ATCAACTTGA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.50, C:0.23, G:0.04, T:0.23
Consensus pattern (21 bp):
CATACCAAAATCACATTAAAA
Found at i:24285035 original size:15 final size:16
Alignment explanation
Indices: 24285005--24285035 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24284995 AAATAAAAAT
24285005 ATAAATAAACATGAAA
1 ATAAATAAACATGAAA
24285021 ATAAATAAA-ATGAAA
1 ATAAATAAACATGAAA
24285036 TAAGAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.19
Consensus pattern (16 bp):
ATAAATAAACATGAAA
Found at i:24285038 original size:10 final size:9
Alignment explanation
Indices: 24284983--24285051 Score: 52
Period size: 10 Copynumber: 7.1 Consensus size: 9
24284973 GGGGAATGTT
24284983 TAAA-AAAA
1 TAAATAAAA
24284991 TAAA-AAATA
1 TAAATAAA-A
*
24285000 AAAATATAAA
1 TAAATA-AAA
24285010 TAAACATGAAAA
1 T-AA-AT-AAAA
24285022 TAAATAAAA
1 TAAATAAAA
24285031 TGAAATAAGAA
1 T-AAATAA-AA
24285042 TAAATAAAA
1 TAAATAAAA
24285051 T
1 T
24285052 TATACAAGTG
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
8 7 0.14
9 12 0.24
10 16 0.31
11 9 0.18
12 6 0.12
13 1 0.02
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.20
Consensus pattern (9 bp):
TAAATAAAA
Found at i:24285735 original size:27 final size:28
Alignment explanation
Indices: 24285702--24285757 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
24285692 CCTTAAAATG
* *
24285702 ACTTAAAAAATC-AATTTTTGTTTTTCA
1 ACTTAAAAAAACAAATTTTTATTTTTCA
24285729 ACTTAAAAAAACAAATTTTTATTTTTCA
1 ACTTAAAAAAACAAATTTTTATTTTTCA
24285757 A
1 A
24285758 AATCTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.45
Consensus pattern (28 bp):
ACTTAAAAAAACAAATTTTTATTTTTCA
Found at i:24285982 original size:144 final size:144
Alignment explanation
Indices: 24285744--24286010 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 144
24285734 AAAAAACAAA
* *
24285744 TTTTTATTTTTCAAAATCTAAAATTTCTCCTTTTTTTAAAAAAAAAACTATTTTTCTTAAAGATT
1 TTTTTAATTTTCAAAAACTAAAATTTCTCCTTTTTTTAAAAAAAAAACTATTTTTCTTAAAGATT
* * * *
24285809 AAAGCTGTTATTTTGGAGTAGTTGAAAAAAAAAATCAAAA-CTCTGTTTTAAAATTTTAAACTTA
66 AAAGCTGTTACTTTGAAATAGTTG--AAAAAAAATCAAAACCT-TGTTTTAAAAATTTAAACTTA
24285873 GAAATGACTAATTTTTT
128 GAAATGACTAATTTTTT
* * * * *
24285890 TTTTTAATTTTCAAAAACTAAAATTTCT-TTTTTTTTAAGAAAAACACT-TTTTTTTTAAATATT
1 TTTTTAATTTTCAAAAACTAAAATTTCTCCTTTTTTTAAAAAAAAAACTATTTTTCTTAAAGATT
* *
24285953 AAAGCTTTTACTTTGAAATAGTTGAAAAAAATTCAAAACCTTGTTTTAAAAATTTAAA
66 AAAGCTGTTACTTTGAAATAGTTGAAAAAAAATCAAAACCTTGTTTTAAAAATTTAAA
24286011 ATTTCCTTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
142 29 0.27
143 2 0.02
144 33 0.31
145 17 0.16
146 26 0.24
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (144 bp):
TTTTTAATTTTCAAAAACTAAAATTTCTCCTTTTTTTAAAAAAAAAACTATTTTTCTTAAAGATT
AAAGCTGTTACTTTGAAATAGTTGAAAAAAAATCAAAACCTTGTTTTAAAAATTTAAACTTAGAA
ATGACTAATTTTTT
Found at i:24286910 original size:42 final size:41
Alignment explanation
Indices: 24286813--24286979 Score: 194
Period size: 42 Copynumber: 4.0 Consensus size: 41
24286803 AGTAAACTAA
* * * * *
24286813 AAAAGTAAACGGACCTCCACACCTGAGCCTCTAA-ACTA-G
1 AAAAGTAAATGGACCTCCACACCTGGGTCTCTAATGCAATG
** *
24286852 AAAAGTAAACAGACCTCCACACCTAGGTCTCTAGATGCAATG
1 AAAAGTAAATGGACCTCCACACCTGGGTCTCTA-ATGCAATG
*
24286894 AAAAGTGAATGGACCTCCACACCTGGGTCTCTAATTGCAATG
1 AAAAGTAAATGGACCTCCACACCTGGGTCTCTAA-TGCAATG
* *
24286936 AAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGTAATG
1 AAAAGTAAATGGACCTCCACACCTGGGTCTCT-AATGCAATG
24286978 AA
1 AA
24286980 TTTTTTCCTT
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 29 0.26
40 1 0.01
41 3 0.03
42 75 0.68
43 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.20
Consensus pattern (41 bp):
AAAAGTAAATGGACCTCCACACCTGGGTCTCTAATGCAATG
Found at i:24293318 original size:19 final size:19
Alignment explanation
Indices: 24293294--24293331 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
24293284 TCAAAAGTAG
*
24293294 TGATAGTAGAGAAATTCTT
1 TGATAGTAGAAAAATTCTT
24293313 TGATAGTAGAAAAATTCTT
1 TGATAGTAGAAAAATTCTT
24293332 ACTGGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.37
Consensus pattern (19 bp):
TGATAGTAGAAAAATTCTT
Found at i:24307759 original size:16 final size:15
Alignment explanation
Indices: 24307738--24307772 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24307728 TAAGATCTTG
24307738 TATATCTAGATAAAAA
1 TATATCTAGA-AAAAA
*
24307754 TATATCTATAAAAAA
1 TATATCTAGAAAAAA
24307769 TATA
1 TATA
24307773 GACAATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (15 bp):
TATATCTAGAAAAAA
Found at i:24310626 original size:79 final size:81
Alignment explanation
Indices: 24310490--24310674 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
24310480 TTGAATGATG
*
24310490 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
24310554 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
24310569 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
24310631 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
24310649 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24310675 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:24310688 original size:40 final size:40
Alignment explanation
Indices: 24310491--24310674 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
24310481 TGAATGATGT
* * * *
24310491 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24310531 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
24310571 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24310609 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24310650 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24310675 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24310696 original size:79 final size:79
Alignment explanation
Indices: 24310543--24310707 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
24310533 GGACTAAGAT
* **
24310543 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
24310608 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
24310622 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
24310685 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24310701 CCGAAGG
1 CCGAAGG
24310708 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24318599 original size:79 final size:81
Alignment explanation
Indices: 24318463--24318647 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
24318453 TTGAATGATG
*
24318463 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
24318527 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
24318542 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
24318604 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
24318622 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24318648 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:24318661 original size:40 final size:40
Alignment explanation
Indices: 24318464--24318647 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
24318454 TGAATGATGT
* * * *
24318464 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24318504 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
24318544 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24318582 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24318623 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24318648 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24318669 original size:79 final size:79
Alignment explanation
Indices: 24318516--24318680 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
24318506 GGACTAAGAT
* **
24318516 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
24318581 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
24318595 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
24318658 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24318674 CCGAAGG
1 CCGAAGG
24318681 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24330601 original size:30 final size:30
Alignment explanation
Indices: 24330544--24330601 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
24330534 CACAGTTTGG
* * *
24330544 CACATGGCCATGTGTCTAGCCTATGTGGCT
1 CACACGGCCATGTGTCCAGCCCATGTGGCT
* *
24330574 CACACGGCCGTGTGTCCAGCCCGTGTGG
1 CACACGGCCATGTGTCCAGCCCATGTGG
24330602 GAAGACCCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.31, G:0.31, T:0.24
Consensus pattern (30 bp):
CACACGGCCATGTGTCCAGCCCATGTGGCT
Found at i:24338915 original size:6 final size:6
Alignment explanation
Indices: 24338904--24338941 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
24338894 AAAGTCTAAG
24338904 AAATAA AAATAAA ACAATAA AAATAA AAAT-A AAATAA A
1 AAATAA AAAT-AA A-AATAA AAATAA AAATAA AAATAA A
24338942 CATGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.17
6 15 0.52
7 6 0.21
8 3 0.10
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:24338924 original size:14 final size:14
Alignment explanation
Indices: 24338905--24338931 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24338895 AAGTCTAAGA
24338905 AATAAAAATAAAAC
1 AATAAAAATAAAAC
24338919 AATAAAAATAAAA
1 AATAAAAATAAAA
24338932 ATAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (14 bp):
AATAAAAATAAAAC
Found at i:24338961 original size:24 final size:25
Alignment explanation
Indices: 24338909--24338961 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
24338899 CTAAGAAATA
*
24338909 AAAATAAAACAATAAAAATAAAAAT
1 AAAATAAAACAATAAAAATAAAAAG
24338934 AAAAT-AAAC-ATGAAAAA-AATAAAG
1 AAAATAAAACAAT-AAAAATAA-AAAG
24338958 AAAA
1 AAAA
24338962 CAGATTAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 4 0.16
24 16 0.64
25 5 0.20
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (25 bp):
AAAATAAAACAATAAAAATAAAAAG
Found at i:24340433 original size:15 final size:16
Alignment explanation
Indices: 24340413--24340442 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24340403 GAATAAAAAT
24340413 AAAAACAA-AACTTAC
1 AAAAACAAGAACTTAC
24340428 AAAAACAAGAACTTA
1 AAAAACAAGAACTTA
24340443 ATAAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.17, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAACAAGAACTTAC
Found at i:24344513 original size:12 final size:12
Alignment explanation
Indices: 24344498--24344523 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24344488 CATTTTGTTA
24344498 TATTTTTTATGT
1 TATTTTTTATGT
24344510 TATTTTTTATGT
1 TATTTTTTATGT
24344522 TA
1 TA
24344524 AAATAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (12 bp):
TATTTTTTATGT
Found at i:24346793 original size:91 final size:91
Alignment explanation
Indices: 24346688--24346868 Score: 353
Period size: 91 Copynumber: 2.0 Consensus size: 91
24346678 TGGTTGAGCC
24346688 AATTAGTACAGTTTATTCTTTAAATATTCCCCTGTTTCACTGCCTGACAGTCCTGACCTCCCCTT
1 AATTAGTACAGTTTATTCTTTAAATATTCCCCTGTTTCACTGCCTGACAGTCCTGACCTCCCCTT
24346753 ACAAAAATTCACATAACTCTCTGTAG
66 ACAAAAATTCACATAACTCTCTGTAG
*
24346779 AATTAGTACAGTTTATTCTTTAAATCTTCCCCTGTTTCACTGCCTGACAGTCCTGACCTCCCCTT
1 AATTAGTACAGTTTATTCTTTAAATATTCCCCTGTTTCACTGCCTGACAGTCCTGACCTCCCCTT
24346844 ACAAAAATTCACATAACTCTCTGTA
66 ACAAAAATTCACATAACTCTCTGTA
24346869 AAAGTTTCAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.35
Consensus pattern (91 bp):
AATTAGTACAGTTTATTCTTTAAATATTCCCCTGTTTCACTGCCTGACAGTCCTGACCTCCCCTT
ACAAAAATTCACATAACTCTCTGTAG
Found at i:24348266 original size:69 final size:70
Alignment explanation
Indices: 24348155--24348318 Score: 251
Period size: 69 Copynumber: 2.3 Consensus size: 70
24348145 AATGAATTGG
** * * *
24348155 GGAATCAGCACAAAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCC-TTCACATTTCAGAT
1 GGAATCAGCACTTAGCAACCCCTTGAGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAT
24348219 -GCGGT
66 AG-GGT
24348224 GGAATCAGCACTTAGCAACCCCTTGAGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAT
1 GGAATCAGCACTTAGCAACCCCTTGAGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAT
24348289 AGGGT
66 AGGGT
24348294 GGAATCAGCACTTAGCAACCACCTT
1 GGAATCAGCACTTAGCAACC-CCTT
24348319 CATATTCAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
69 47 0.54
70 35 0.40
71 5 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (70 bp):
GGAATCAGCACTTAGCAACCCCTTGAGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAAT
AGGGT
Found at i:24355432 original size:33 final size:34
Alignment explanation
Indices: 24355390--24355545 Score: 105
Period size: 33 Copynumber: 4.6 Consensus size: 34
24355380 CTGATGCGGT
24355390 GGAATCAGCACTTAGCAACCACCAAT-GAATAGG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
* *
24355423 GGAATCAGCACTTAGCAACC-TC--TCG---A-G
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
* *
24355450 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--TAGAATA-GG
*
24355492 TGGAATCAGCACTTAGCAACCACCAAT-GAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
**
24355526 GGAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
24355546 CCTTTATATG
Statistics
Matches: 97, Mismatches: 9, Indels: 34
0.69 0.06 0.24
Matches are distributed among these distances:
27 19 0.20
28 3 0.03
30 1 0.01
31 1 0.01
32 2 0.02
33 38 0.39
34 2 0.02
35 3 0.03
36 1 0.01
37 1 0.01
38 1 0.01
39 2 0.02
40 1 0.01
42 4 0.04
43 18 0.19
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.17
Consensus pattern (34 bp):
GGAATCAGCACTTAGCAACCACCAATAGAATAGG
Found at i:24355460 original size:102 final size:103
Alignment explanation
Indices: 24355284--24355548 Score: 406
Period size: 102 Copynumber: 2.6 Consensus size: 103
24355274 TAACCGTTAT
* * * * *
24355284 CGGTGGATTCCGCACTTAGCAACCACGAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGG
*** *
24355349 GAATCAGCACTTAGCAACCCCC-TTCACATTTCTGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* ** *
24355386 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCTCTCGAGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGG
24355451 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
24355489 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
24355549 TTATATGCAA
Statistics
Matches: 145, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
102 78 0.54
103 67 0.46
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.18
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:24362575 original size:11 final size:9
Alignment explanation
Indices: 24362547--24362572 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24362537 ATCGTAATTG
24362547 AACTCTCTA
1 AACTCTCTA
24362556 AACTCTCTA
1 AACTCTCTA
24362565 AACTCTCT
1 AACTCTCT
24362573 CTATATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (9 bp):
AACTCTCTA
Found at i:24377364 original size:15 final size:15
Alignment explanation
Indices: 24377344--24377381 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
24377334 GGCTACACTC
24377344 AACTCATATTTA-AAT
1 AACTCAT-TTTATAAT
24377359 AACTCATTTTATAAT
1 AACTCATTTTATAAT
*
24377374 AATTCATT
1 AACTCATT
24377382 AAGACTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (15 bp):
AACTCATTTTATAAT
Found at i:24385969 original size:35 final size:35
Alignment explanation
Indices: 24385923--24385993 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
24385913 TACATTTAAC
24385923 ATAGTAGTATATAATTAATATAAAAAGTTTTACTA
1 ATAGTAGTATATAATTAATATAAAAAGTTTTACTA
24385958 ATAGTAGTATATAATTAATATAAAAAGTTTTACTA
1 ATAGTAGTATATAATTAATATAAAAAGTTTTACTA
24385993 A
1 A
24385994 CCTTATCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.39
Consensus pattern (35 bp):
ATAGTAGTATATAATTAATATAAAAAGTTTTACTA
Found at i:24390225 original size:18 final size:17
Alignment explanation
Indices: 24390205--24390237 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24390195 AAGAAAAATA
24390205 AAAAGTCATAAAAACAT
1 AAAAGTCATAAAAACAT
*
24390222 AAAAGTCCTAAAAACA
1 AAAAGTCATAAAAACA
24390238 AAACATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.15, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAAGTCATAAAAACAT
Found at i:24401031 original size:237 final size:236
Alignment explanation
Indices: 24400558--24401034 Score: 927
Period size: 237 Copynumber: 2.0 Consensus size: 236
24400548 ATTTTTTAAA
24400558 AATTTTAAATTAGTAAAGGTAAAATTGTACTTTGCCCCCCTAAAATTATAAAAATATTATTTAAT
1 AATTTTAAATTAGTAAAGGTAAAATTGTACTTTGCCCCCCTAAAATTATAAAAATATTATTTAAT
24400623 CCTTTAAAAATGATAAAGATATAGACTATAAAAAATTAAAATTTTATTCAACCCCCTAAAAGATT
66 CCTTTAAAAATGATAAAGATATAGACTATAAAAAATTAAAATTTTATTCAACCCCCTAAAAGATT
24400688 GTTCTGGCTTCACCCCTGGTGACACAGTGAATCGATGTTACGACATTCTGAGCAGTTATTGGTTG
131 GTTCTGGCTTCACCCCTGGTGACACAGTGAATCGATGTTACGACATTCTGAGCAGTTATTGGTTG
24400753 TTTTGGTTTTTACTAGTCTTTCAGTAGAGCATTTATTTCTT
196 TTTTGGTTTTTACTAGTCTTTCAGTAGAGCATTTATTTCTT
24400794 AATTTTAAATTAGTAAAGGTAAAATTGTACTTTGCCCCCCTAAAATTATAAAAATATTATTTAAT
1 AATTTTAAATTAGTAAAGGTAAAATTGTACTTTGCCCCCCTAAAATTATAAAAATATTATTTAAT
*
24400859 CCTTTGAAAATGATAAAGATATAGACTATAAAAAATTAAAATTTTATTCAACCCCCCTAAAAGAT
66 CCTTTAAAAATGATAAAGATATAGACTATAAAAAATTAAAATTTTATTCAA-CCCCCTAAAAGAT
*
24400924 TGTTCTGGCTTCACCCCTGGTGACACAGTGAATCGATGTTACGACATTCTGAGTAGTTATTGGTT
130 TGTTCTGGCTTCACCCCTGGTGACACAGTGAATCGATGTTACGACATTCTGAGCAGTTATTGGTT
24400989 GTTTTGGTTTTTACTAGTCTTTCAGTAGAGCATTTATTTCTT
195 GTTTTGGTTTTTACTAGTCTTTCAGTAGAGCATTTATTTCTT
24401031 AATT
1 AATT
24401035 CAATTCTTTC
Statistics
Matches: 238, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
236 115 0.48
237 123 0.52
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (236 bp):
AATTTTAAATTAGTAAAGGTAAAATTGTACTTTGCCCCCCTAAAATTATAAAAATATTATTTAAT
CCTTTAAAAATGATAAAGATATAGACTATAAAAAATTAAAATTTTATTCAACCCCCTAAAAGATT
GTTCTGGCTTCACCCCTGGTGACACAGTGAATCGATGTTACGACATTCTGAGCAGTTATTGGTTG
TTTTGGTTTTTACTAGTCTTTCAGTAGAGCATTTATTTCTT
Found at i:24405660 original size:15 final size:16
Alignment explanation
Indices: 24405642--24405671 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24405632 TGGTGTCTTG
24405642 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
24405657 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
24405672 AGCACGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:24413333 original size:401 final size:401
Alignment explanation
Indices: 24412590--24413391 Score: 1604
Period size: 401 Copynumber: 2.0 Consensus size: 401
24412580 GAGGACTATG
24412590 TTTGCTTGCTGAAAAAGTCCCTTTACGGTTTGAAACAGTCACCAAGACAGTGATACAAAAGGTTT
1 TTTGCTTGCTGAAAAAGTCCCTTTACGGTTTGAAACAGTCACCAAGACAGTGATACAAAAGGTTT
24412655 GACTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTACTTTAAGAA
66 GACTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTACTTTAAGAA
24412720 AAATAGTGATAGTTCTTTTGTGTATCTACTCCTTTATGTTGATGACATGTTGATAGCAGTGAAAG
131 AAATAGTGATAGTTCTTTTGTGTATCTACTCCTTTATGTTGATGACATGTTGATAGCAGTGAAAG
24412785 ATAAAGGAGGGATAACAAAGGTCAAAGCCCAACTAAGTGAAGAATTTGAGATAAAAGATTTGGGG
196 ATAAAGGAGGGATAACAAAGGTCAAAGCCCAACTAAGTGAAGAATTTGAGATAAAAGATTTGGGG
24412850 CCAGAAAAAAAGATACTTGGTATTGAGATTCTCAGAGATAAAAAAAGCAAGTAAATTGTACCTAA
261 CCAGAAAAAAAGATACTTGGTATTGAGATTCTCAGAGATAAAAAAAGCAAGTAAATTGTACCTAA
24412915 GTCAGAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTTCTAAGCCTATTAGT
326 GTCAGAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTTCTAAGCCTATTAGT
24412980 ACTCCTTTAGT
391 ACTCCTTTAGT
24412991 TTTGCTTGCTGAAAAAGTCCCTTTACGGTTTGAAACAGTCACCAAGACAGTGATACAAAAGGTTT
1 TTTGCTTGCTGAAAAAGTCCCTTTACGGTTTGAAACAGTCACCAAGACAGTGATACAAAAGGTTT
24413056 GACTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTACTTTAAGAA
66 GACTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTACTTTAAGAA
24413121 AAATAGTGATAGTTCTTTTGTGTATCTACTCCTTTATGTTGATGACATGTTGATAGCAGTGAAAG
131 AAATAGTGATAGTTCTTTTGTGTATCTACTCCTTTATGTTGATGACATGTTGATAGCAGTGAAAG
24413186 ATAAAGGAGGGATAACAAAGGTCAAAGCCCAACTAAGTGAAGAATTTGAGATAAAAGATTTGGGG
196 ATAAAGGAGGGATAACAAAGGTCAAAGCCCAACTAAGTGAAGAATTTGAGATAAAAGATTTGGGG
24413251 CCAGAAAAAAAGATACTTGGTATTGAGATTCTCAGAGATAAAAAAAGCAAGTAAATTGTACCTAA
261 CCAGAAAAAAAGATACTTGGTATTGAGATTCTCAGAGATAAAAAAAGCAAGTAAATTGTACCTAA
24413316 GTCAGAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTTCTAAGCCTATTAGT
326 GTCAGAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTTCTAAGCCTATTAGT
24413381 ACTCCTTTAGT
391 ACTCCTTTAGT
24413392 AGCCCATTTC
Statistics
Matches: 401, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
401 401 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (401 bp):
TTTGCTTGCTGAAAAAGTCCCTTTACGGTTTGAAACAGTCACCAAGACAGTGATACAAAAGGTTT
GACTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTACTTTAAGAA
AAATAGTGATAGTTCTTTTGTGTATCTACTCCTTTATGTTGATGACATGTTGATAGCAGTGAAAG
ATAAAGGAGGGATAACAAAGGTCAAAGCCCAACTAAGTGAAGAATTTGAGATAAAAGATTTGGGG
CCAGAAAAAAAGATACTTGGTATTGAGATTCTCAGAGATAAAAAAAGCAAGTAAATTGTACCTAA
GTCAGAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTTCTAAGCCTATTAGT
ACTCCTTTAGT
Found at i:24418537 original size:26 final size:26
Alignment explanation
Indices: 24418483--24418557 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
24418473 TCTCATTCCT
* *
24418483 ATTTTACTCCAGG-AAAATTTTGACA
1 ATTTTACTCCTGGTAAAATTTTAACA
*
24418508 ATTTTACTCCTGGTAAAATTTTAACG
1 ATTTTACTCCTGGTAAAATTTTAACA
* *
24418534 ATTTTGCCCCTGGTAAAATTTTAA
1 ATTTTACTCCTGGTAAAATTTTAA
24418558 GAAAATATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 12 0.27
26 32 0.73
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (26 bp):
ATTTTACTCCTGGTAAAATTTTAACA
Found at i:24418713 original size:6 final size:6
Alignment explanation
Indices: 24418702--24418773 Score: 81
Period size: 6 Copynumber: 12.0 Consensus size: 6
24418692 TGCAAATGGA
** *
24418702 TCATTT TCATTT TTGTTT CCATTT TCATTT TCATTT TCATTT TCATTT
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
* * * *
24418750 CCATTT CCATTT CCATTT CCATTT
1 TCATTT TCATTT TCATTT TCATTT
24418774 CTATTTTTAG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.15, C:0.22, G:0.01, T:0.61
Consensus pattern (6 bp):
TCATTT
Found at i:24418726 original size:18 final size:18
Alignment explanation
Indices: 24418703--24418780 Score: 93
Period size: 18 Copynumber: 4.3 Consensus size: 18
24418693 GCAAATGGAT
**
24418703 CATTTTCATTTTTGTTTC
1 CATTTTCATTTTCATTTC
*
24418721 CATTTTCATTTTCATTTT
1 CATTTTCATTTTCATTTC
*
24418739 CATTTTCATTTCCATTTC
1 CATTTTCATTTTCATTTC
* *
24418757 CATTTCCATTTCCATTTC
1 CATTTTCATTTTCATTTC
*
24418775 TATTTT
1 CATTTT
24418781 TAGAAACCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.15, C:0.22, G:0.01, T:0.62
Consensus pattern (18 bp):
CATTTTCATTTTCATTTC
Found at i:24418891 original size:19 final size:19
Alignment explanation
Indices: 24418867--24418914 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
24418857 CATTTATATT
24418867 TTTCTATTCATTTCGTTCA
1 TTTCTATTCATTTCGTTCA
*
24418886 TTTCTATTCATTTTGTTCA
1 TTTCTATTCATTTCGTTCA
24418905 TTTCTATTCA
1 TTTCTATTCA
24418915 AACACGTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.17, C:0.19, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTCTATTCATTTCGTTCA
Found at i:24424549 original size:24 final size:24
Alignment explanation
Indices: 24424519--24424578 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
24424509 TTTGAATATC
24424519 TTAATATATTTTTTATT-TTATAAT
1 TTAATATATTTTTTATTCTT-TAAT
*
24424543 TTTATAT-TATTTTTATTCTTTAAT
1 TTAATATAT-TTTTTATTCTTTAAT
24424567 TTAATATTATTT
1 TTAATA-TATTT
24424579 GGTTATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 1 0.03
24 23 0.77
25 5 0.17
26 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (24 bp):
TTAATATATTTTTTATTCTTTAAT
Found at i:24428915 original size:15 final size:15
Alignment explanation
Indices: 24428897--24428925 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24428887 TTATTATTAA
24428897 ATATAATTTAATAAT
1 ATATAATTTAATAAT
24428912 ATATAATTTAATAA
1 ATATAATTTAATAA
24428926 CATTCTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATAATTTAATAAT
Found at i:24442518 original size:27 final size:27
Alignment explanation
Indices: 24442459--24442530 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
24442449 TTCAAACTGA
**
24442459 TATAAAATGACTGTTATGCGCCCATGT
1 TATAAAATGACTGTTATGCGCCCAAAT
**
24442486 GGTAAAATGACTGTTATGC-CCCTAAAT
1 TATAAAATGACTGTTATGCGCCC-AAAT
*
24442513 TATAAAATGATTG-TATGC
1 TATAAAATGACTGTTATGC
24442531 TTTCTGTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 8 0.22
27 29 0.78
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCGCCCAAAT
Found at i:24450293 original size:44 final size:43
Alignment explanation
Indices: 24450238--24450378 Score: 151
Period size: 44 Copynumber: 3.2 Consensus size: 43
24450228 AGTTGTTAAA
*
24450238 TGGTAAGAAATGAACAGGCATTATAATCGTTTGATTGATTGTTT
1 TGGTAAGAAATGAACATGCATTATAAT-GTTTGATTGATTGTTT
*
24450282 TGGTAATAAATGAACATGCATTATAAATGTTT-AGTTGATTG-TT
1 TGGTAAGAAATGAACATGCATTAT-AATGTTTGA-TTGATTGTTT
* * * * *
24450325 TGGTAAGCAATGGACATGTAATATAATTGTCTTGGTTGATTGTTT
1 TGGTAAGAAATGAACATGCATTATAA-TGT-TTGATTGATTGTTT
*
24450370 AGGTAAGAA
1 TGGTAAGAA
24450379 TTTCAATGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 2 0.02
43 25 0.31
44 42 0.52
45 12 0.15
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.39
Consensus pattern (43 bp):
TGGTAAGAAATGAACATGCATTATAATGTTTGATTGATTGTTT
Found at i:24451877 original size:17 final size:17
Alignment explanation
Indices: 24451855--24451894 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
24451845 ATTTTGGCAC
24451855 ATTAGCCCTAATTCCTA
1 ATTAGCCCTAATTCCTA
24451872 ATTAGCCCTAATTCCTA
1 ATTAGCCCTAATTCCTA
24451889 ATTAGC
1 ATTAGC
24451895 TCATCATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (17 bp):
ATTAGCCCTAATTCCTA
Found at i:24451914 original size:11 final size:11
Alignment explanation
Indices: 24451900--24451929 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24451890 TTAGCTCATC
24451900 ATTAATTAGAA
1 ATTAATTAGAA
24451911 ATTAATTAGAA
1 ATTAATTAGAA
*
24451922 CTTAATTA
1 ATTAATTA
24451930 CTAGAGCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (11 bp):
ATTAATTAGAA
Found at i:24456724 original size:50 final size:51
Alignment explanation
Indices: 24456668--24456808 Score: 164
Period size: 50 Copynumber: 2.8 Consensus size: 51
24456658 GGATAGCTTC
* *
24456668 GATCACGTGTGTAGTACTATGTGCA-GCTACTACGTGTATCAG-ATA-TTAAT
1 GATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAAAAGTT--T
* * * * *
24456718 GGTCACGCGTGTAGTACTATGTGTAGGCTACTACGTG-AACCGAAAAGTTT
1 GATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAAAAGTTT
*
24456768 GATCACGTGTGTAGTACTATGTGAAGGCTACTACATGTATC
1 GATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
24456809 GAATGATAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
50 59 0.78
51 15 0.20
52 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (51 bp):
GATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAAAAGTTT
Found at i:24459782 original size:40 final size:40
Alignment explanation
Indices: 24459733--24459873 Score: 255
Period size: 40 Copynumber: 3.5 Consensus size: 40
24459723 AGTTCTGTAC
24459733 CTAGCAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
*
24459773 CTAGTAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
**
24459813 CTAGCAGGCTTAATGCTAGTGAATTATTCAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
24459853 CTAGCAGGCTTAATGCCGGTG
1 CTAGCAGGCTTAATGCCGGTG
24459874 TTCTGAAATT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAATTATTCAGACTTAATGT
Found at i:24462743 original size:43 final size:43
Alignment explanation
Indices: 24462693--24462785 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
24462683 ATCATATAGT
24462693 GGCGTTTGTGAAAT-AAGCGCCGCTAAAGAACACTACTTTTAGC
1 GGCGTTTGT-AAATGAAGCGCCGCTAAAGAACACTACTTTTAGC
* * *
24462736 GGTGTTTGTAGATGAAGCGCCGCTAAAGAACATTACTTTTAGC
1 GGCGTTTGTAAATGAAGCGCCGCTAAAGAACACTACTTTTAGC
24462779 GGCGTTT
1 GGCGTTT
24462786 TTTCCCAAGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 3 0.07
43 42 0.93
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
GGCGTTTGTAAATGAAGCGCCGCTAAAGAACACTACTTTTAGC
Found at i:24462820 original size:85 final size:84
Alignment explanation
Indices: 24462707--24462958 Score: 303
Period size: 85 Copynumber: 3.0 Consensus size: 84
24462697 TTTGTGAAAT
* * *** *
24462707 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGTGTTTGTAGATGAAGCGCCGCTAAAGAACATT
1 AAGCGCCGCTAAAGAACA-TGATC-ATTAGCGGTGTTTTTTCCT-AAGCGCCGCTAAAGAACATG
24462770 ACTTTTAGCGGCGTTTTTTCCC
63 ACTTTTAGCGGCGTTTTTTCCC
*
24462792 AAGCGCCGCTAAAGAACATGATCATTAGCGGTGTTTTTTTCCTAAGCGCTGCTAAAGAACATGA-
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGTG-TTTTTTCCTAAGCGCCGCTAAAGAACATGAC
* * *
24462856 TCATTAGCGGCATTTTTTTCCT
65 T-TTTAGCGGC-GTTTTTTCCC
* * *
24462878 AAGCGCTGCTAAAGAACATGATCATTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGACC
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGTGTTTTTTCCTAAGCGCCGCTAAAGAACATGACT
*
24462943 TTTAGCGTCGTTTTTT
66 TTTAGCGGCGTTTTTT
24462959 TCTGTAAGCG
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
84 8 0.06
85 91 0.63
86 45 0.31
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGATCATTAGCGGTGTTTTTTCCTAAGCGCCGCTAAAGAACATGACT
TTTAGCGGCGTTTTTTCCC
Found at i:24462846 original size:43 final size:43
Alignment explanation
Indices: 24462750--24462977 Score: 309
Period size: 43 Copynumber: 5.3 Consensus size: 43
24462740 TTTGTAGATG
* * *
24462750 AAGCGCCGCTAAAGAACATTA-CTTTTAGCGGCG-TTTTTTCCC
1 AAGCGCCGCTAAAGAACATGATC-ATTAGCGGCGTTTTTTTCCT
*
24462792 AAGCGCCGCTAAAGAACATGATCATTAGCGGTGTTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGCGTTTTTTTCCT
* *
24462835 AAGCGCTGCTAAAGAACATGATCATTAGCGGCATTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGCGTTTTTTTCCT
*
24462878 AAGCGCTGCTAAAGAACATGATCATTAGCGGCG-TTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGCGTTTTTTTCCT
* * * *
24462920 AAGCGCCGCTAAAGAACATGACCTTTAGCGTCGTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCATTAGCGGCGTTTTTTTC-CT
*
24462964 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
24462978 TTAGCGACGT
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
42 66 0.39
43 88 0.52
44 14 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
AAGCGCCGCTAAAGAACATGATCATTAGCGGCGTTTTTTTCCT
Found at i:24468947 original size:21 final size:21
Alignment explanation
Indices: 24468923--24468965 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
24468913 AGTTATGAAA
24468923 ATAAAATAAACATATATGTAT
1 ATAAAATAAACATATATGTAT
* * * *
24468944 ATAATATATACATGTATTTAT
1 ATAAAATAAACATATATGTAT
24468965 A
1 A
24468966 AAGTCTAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
ATAAAATAAACATATATGTAT
Found at i:24469073 original size:27 final size:27
Alignment explanation
Indices: 24469042--24469096 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
24469032 AAAATGTGAT
* *
24469042 AATAATAATTATAATAATAGTTTAAAA
1 AATAATAATAATAATAATAGTGTAAAA
* *
24469069 AATAATAATAATATTATTAGTGTAAAA
1 AATAATAATAATAATAATAGTGTAAAA
24469096 A
1 A
24469097 CAGAAGGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (27 bp):
AATAATAATAATAATAATAGTGTAAAA
Found at i:24474267 original size:13 final size:13
Alignment explanation
Indices: 24474249--24474313 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
24474239 AGTTTAGCAA
24474249 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
**
24474262 TGCTTTTGAGGAG
1 TGCTTTTGAAAAG
*
24474275 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
*
24474288 TGC-TTTGAGAAG
1 TGCTTTTGAAAAG
24474300 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
24474313 T
1 T
24474314 TTGGTTTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
12 11 0.27
13 30 0.73
ACGTcount: A:0.26, C:0.06, G:0.31, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:24474310 original size:25 final size:26
Alignment explanation
Indices: 24474249--24474313 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 26
24474239 AGTTTAGCAA
*
24474249 TGCTTTTGAAAAGTGCTTTTGAGGAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
*
24474275 TG-TTGTGGAAAAGTGC-TTTGAGAAG
1 TGCTT-TTGAAAAGTGCTTTTGAGAAG
24474300 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
24474314 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 20 0.59
26 14 0.41
ACGTcount: A:0.26, C:0.06, G:0.31, T:0.37
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAGAAG
Found at i:24479733 original size:9 final size:9
Alignment explanation
Indices: 24479719--24479743 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
24479709 ATCAATGGAC
24479719 TGAATTAAT
1 TGAATTAAT
24479728 TGAATTAAT
1 TGAATTAAT
24479737 TGAATTA
1 TGAATTA
24479744 TCCAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (9 bp):
TGAATTAAT
Found at i:24482567 original size:43 final size:43
Alignment explanation
Indices: 24482516--24482639 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
24482506 AAAAAAAATG
24482516 CCGCTAAAGATCATGACCTTTAGCGGCGCTTTGATCACAAACA
1 CCGCTAAAGATCATGACCTTTAGCGGCGCTTTGATCACAAACA
* * *
24482559 CTGCTAAAGATCATGACCTTTAGTGGCGCTTTTG-TCACAAACG
1 CCGCTAAAGATCATGACCTTTAGCGGCGC-TTTGATCACAAACA
* * * *
24482602 CCACTAAAGAACATGACTTTTAGCGGCGCTTTTATCAC
1 CCGCTAAAGATCATGACCTTTAGCGGCGCTTTGATCAC
24482640 GCCGCTAAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.04
43 63 0.90
44 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
CCGCTAAAGATCATGACCTTTAGCGGCGCTTTGATCACAAACA
Found at i:24482671 original size:38 final size:39
Alignment explanation
Indices: 24482599--24482673 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
24482589 TTTGTCACAA
* *
24482599 ACGCCACTAAAGAACATGACTTTTAGCGGCGCTTTTATC
1 ACGCCACTAAAGAACATAACATTTAGCGGCGCTTTTATC
* *
24482638 ACGCCGCTAAAGAACA-AACATTTAGCGGTGCTTTTA
1 ACGCCACTAAAGAACATAACATTTAGCGGCGCTTTTA
24482674 GCAAAAACGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 17 0.53
39 15 0.47
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (39 bp):
ACGCCACTAAAGAACATAACATTTAGCGGCGCTTTTATC
Found at i:24483109 original size:43 final size:43
Alignment explanation
Indices: 24483043--24483138 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 43
24483033 CGCATTGCAA
* ** * *
24483043 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAACACATTTACTTAATCAAGGAAATCTT
*
24483086 GGTAATAAAAGATATAACACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAACACATTTACTTAATCAAGGAAATCTT
*
24483129 -GTAATGAAAG
1 GGTAATAAAAG
24483139 CAATGAGCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 9 0.20
43 37 0.80
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.31
Consensus pattern (43 bp):
GGTAATAAAAGATACAACACATTTACTTAATCAAGGAAATCTT
Found at i:24485570 original size:29 final size:29
Alignment explanation
Indices: 24485472--24485574 Score: 84
Period size: 29 Copynumber: 3.5 Consensus size: 29
24485462 AAAAAAAATT
*
24485472 AAAACCAAAATAAAGAGGAAAAATACTGG
1 AAAAACAAAATAAAGAGGAAAAATACTGG
** * *
24485501 AAAAACAAAATAAA-ATCTCAAAAAAAAT-G
1 AAAAACAAAATAAAGA--GGAAAAATACTGG
* *
24485530 AAGCGAAGAAAATAAAGAGGAAAAATACTGG
1 AA--AAACAAAATAAAGAGGAAAAATACTGG
*
24485561 AAAAATAAAATAAA
1 AAAAACAAAATAAA
24485575 ATCAAGGACC
Statistics
Matches: 55, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
28 1 0.02
29 26 0.47
30 14 0.25
31 13 0.24
32 1 0.02
ACGTcount: A:0.67, C:0.08, G:0.14, T:0.12
Consensus pattern (29 bp):
AAAAACAAAATAAAGAGGAAAAATACTGG
Found at i:24487125 original size:8 final size:7
Alignment explanation
Indices: 24487107--24487266 Score: 69
Period size: 7 Copynumber: 22.7 Consensus size: 7
24487097 ATCAATTAAT
24487107 CTAAACC
1 CTAAACC
24487114 CTAAACCC
1 CTAAA-CC
24487122 CT-AA-C
1 CTAAACC
**
24487127 CTCAATTC
1 CT-AAACC
24487135 CTAAACC
1 CTAAACC
*
24487142 CTAAATC
1 CTAAACC
* *
24487149 ATAAAAC
1 CTAAACC
* *
24487156 ATGAA-C
1 CTAAACC
24487162 CTAAACC
1 CTAAACC
*
24487169 CATAACCC
1 C-TAAACC
*
24487177 CTAACCC
1 CTAAACC
*
24487184 CTAACCC
1 CTAAACC
24487191 CT-AACC
1 CTAAACC
24487197 CTTAAACC
1 C-TAAACC
24487205 CT-AACC
1 CTAAACC
24487211 CTTAAACC
1 C-TAAACC
*
24487219 ATAAACC
1 CTAAACC
* *
24487226 ATAATCC
1 CTAAACC
* *
24487233 ATAATCC
1 CTAAACC
24487240 CTAAACAC
1 CTAAAC-C
* *
24487248 ATAATCC
1 CTAAACC
24487255 CTAAACC
1 CTAAACC
*
24487262 TTAAA
1 CTAAA
24487267 ATAGTAACTC
Statistics
Matches: 122, Mismatches: 20, Indels: 22
0.74 0.12 0.13
Matches are distributed among these distances:
5 3 0.02
6 13 0.11
7 79 0.65
8 27 0.22
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:24487189 original size:21 final size:21
Alignment explanation
Indices: 24487165--24487245 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
24487155 CATGAACCTA
*
24487165 AACCCATAACCCCTAACCCCT
1 AACCCATAACCCCTAAACCCT
* *
24487186 AACCCCTAACCCTTAAACCCT
1 AACCCATAACCCCTAAACCCT
* * * *
24487207 AACCCTTAAACCATAAACCAT
1 AACCCATAACCCCTAAACCCT
* *
24487228 AATCCATAATCCCTAAAC
1 AACCCATAACCCCTAAAC
24487246 ACATAATCCC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (21 bp):
AACCCATAACCCCTAAACCCT
Found at i:24487252 original size:15 final size:15
Alignment explanation
Indices: 24487232--24487260 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24487222 AACCATAATC
24487232 CATAATCCCTAAACA
1 CATAATCCCTAAACA
24487247 CATAATCCCTAAAC
1 CATAATCCCTAAAC
24487261 CTTAAAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CATAATCCCTAAACA
Found at i:24487594 original size:82 final size:82
Alignment explanation
Indices: 24487379--24487945 Score: 698
Period size: 82 Copynumber: 6.9 Consensus size: 82
24487369 GCTAAAAATA
* * * *
24487379 GAGCATTAGCGGCG-CTTCTTCAAAAACGCCGCTAAA-GCCCGAGCATTAGCAGCGCTTTTTTAC
1 GAGCATTAGCGGCGCCTT-TTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAA
* *
24487442 AAACACCGCTAAAGCCCC
65 AAACGCCGCTAAAGGCCC
* * * *
24487460 GAGCATTAGCAGCG-CTTTTCCAAAACACGCCGCTAAAGTCCCGAGCATTAGCGACGCTTTTTCA
1 GAGCATTAGCGGCGCCTTTT-CAAAA-ACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCA
*
24487524 AAAATGCCGCTAAAGGCCC
64 AAAACGCCGCTAAAGGCCC
* * * *
24487543 AAGCATTAGCGGCGCCTTTTCGAAAACGCCGCTAAAGGCCCAAGCATTAGCGGCGCCTTTTCGAA
1 GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAAA
24487608 AACGCCGCTAAA-GCCC
66 AACGCCGCTAAAGGCCC
* * * *
24487624 GAGCATTAGCGGCGCCTTTTCGAAAACGCAGCTAAAGGCCCGAGCATTAGCGGTGCCTTTTCGAA
1 GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAAA
*
24487689 AATGCCGCTAAAGGCCC
66 AACGCCGCTAAAGGCCC
* * * *
24487706 AAGCATTAGCGGCGCCTTTTCGAAAACGCCGCTAAAGGCCCAAGCATTAGCGGCGCCTTTTCGAA
1 GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAAA
*
24487771 AACACCGCTAAA-GCCTC
66 AACGCCGCTAAAGGCC-C
* * ** * *
24487788 GAGCATTAGCGGTGCCTTTTCAAAAATGCCGCTAAAACCCCGAGCATTAGCGGC-ACTTTACTAA
1 GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTC-AA
**
24487852 AAACGTTGCTAAAGGCCC
65 AAACGCCGCTAAAGGCCC
* * * * *
24487870 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGTGGCG-TTTTTCAGA
1 GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAAA
24487934 AACGCCGCTAAA
66 AACGCCGCTAAA
24487946 AGCCGCAAAA
Statistics
Matches: 425, Mismatches: 52, Indels: 18
0.86 0.11 0.04
Matches are distributed among these distances:
80 2 0.00
81 117 0.28
82 245 0.58
83 56 0.13
84 5 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (82 bp):
GAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCAAA
AACGCCGCTAAAGGCCC
Found at i:24487613 original size:123 final size:123
Alignment explanation
Indices: 24487379--24487945 Score: 700
Period size: 123 Copynumber: 4.6 Consensus size: 123
24487369 GCTAAAAATA
* * **
24487379 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAA-GCCCGAGCATTAGCAGCG-CTTTTTTAC
1 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCGA-
* * * *
24487442 AAACACCGCTAAAGCCCCGAGCATTAGCAGCG-CTTTTCCAAAACACGCCGCTAAAGTCCC
65 AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCCTTTT-CAAAA-ACGCCGCTAAAGGCCC
* * *
24487502 GAGCATTAGCGACGCTTTTTCAAAAATGCCGCTAAAGGCCCAAGCATTAGCGGCGCCTTTTCGAA
1 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCGAA
* *
24487567 AACGCCGCTAAAGGCCCAAGCATTAGCGGCGCCTTTTCGAAAACGCCGCTAAA-GCCC
66 AACGCCGCTAAAGCCCCAAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCC
* * * *
24487624 GAGCATTAGCGGCGCCTTTTCGAAAACGCAGCTAAAGGCCCGAGCATTAGCGGTGCCTTTTCGAA
1 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCGAA
* * *
24487689 AATGCCGCTAAAGGCCCAAGCATTAGCGGCGCCTTTTCGAAAACGCCGCTAAAGGCCC
66 AACGCCGCTAAAGCCCCAAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCC
* * * * * *
24487747 AAGCATTAGCGGCGCCTTTTCGAAAACACCGCTAAA-GCCTCGAGCATTAGCGGTGCCTTTTCAA
1 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCC-CGAGCATTAGCGGCGCCTTTTCGA
* * * * * **
24487811 AAATGCCGCTAAAACCCCGAGCATTAGCGGC-ACTTTACTAAAAACGTTGCTAAAGGCCC
65 AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCCTTTTC-AAAAACGCCGCTAAAGGCCC
* * *
24487870 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGTGGCG-TTTTTC-AG
1 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCGA-
24487933 AAACGCCGCTAAA
65 AAACGCCGCTAAA
24487946 AGCCGCAAAA
Statistics
Matches: 394, Mismatches: 42, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
121 1 0.00
122 138 0.35
123 194 0.49
124 50 0.13
125 11 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (123 bp):
GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCCTTTTCGAA
AACGCCGCTAAAGCCCCAAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCC
Found at i:24487949 original size:41 final size:41
Alignment explanation
Indices: 24487379--24487945 Score: 611
Period size: 41 Copynumber: 13.9 Consensus size: 41
24487369 GCTAAAAATA
*
24487379 GAGCATTAGCGGCG-CTTCTTCAAAAACGCCGCTAAA-GCCC
1 GAGCATTAGCGGCGCCTT-TTCAGAAACGCCGCTAAAGGCCC
* * * * * *
24487419 GAGCATTAGCAGCGCTTTTTTACAAACACCGCTAAAGCCCC
1 GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAAGGCCC
* * *
24487460 GAGCATTAGCAGCG-CTTTTCCAAAACACGCCGCTAAAGTCCC
1 GAGCATTAGCGGCGCCTTTT-CAGAA-ACGCCGCTAAAGGCCC
* * * *
24487502 GAGCATTAGCGACGCTTTTTCAAAAATGCCGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAAGGCCC
*
24487543 AAGCATTAGCGGCGCCTTTTC-GAAAACGCCGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCCC
*
24487584 AAGCATTAGCGGCGCCTTTTC-GAAAACGCCGCTAAA-GCCC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCCC
*
24487624 GAGCATTAGCGGCGCCTTTTC-GAAAACGCAGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCCC
* *
24487665 GAGCATTAGCGGTGCCTTTTC-GAAAATGCCGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCCC
*
24487706 AAGCATTAGCGGCGCCTTTTC-GAAAACGCCGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCCC
* *
24487747 AAGCATTAGCGGCGCCTTTTC-GAAAACACCGCTAAA-GCCTC
1 GAGCATTAGCGGCGCCTTTTCAG-AAACGCCGCTAAAGGCC-C
* * * **
24487788 GAGCATTAGCGGTGCCTTTTCAAAAATGCCGCTAAAACCCC
1 GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAAGGCCC
* * * **
24487829 GAGCATTAGCGGC-ACTTTACTAAAAACGTTGCTAAAGGCCC
1 GAGCATTAGCGGCGCCTTTTC-AGAAACGCCGCTAAAGGCCC
* * *
24487870 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCC
1 GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAAGGCCC
* *
24487911 GAGCATTAGTGGCG-TTTTTCAGAAACGCCGCTAAA
1 GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAA
24487946 AGCCGCAAAA
Statistics
Matches: 463, Mismatches: 52, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
40 98 0.21
41 324 0.70
42 37 0.08
43 4 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (41 bp):
GAGCATTAGCGGCGCCTTTTCAGAAACGCCGCTAAAGGCCC
Found at i:24488041 original size:39 final size:39
Alignment explanation
Indices: 24487992--24488079 Score: 131
Period size: 39 Copynumber: 2.3 Consensus size: 39
24487982 AGGGTTTTCA
*
24487992 CGGCGATTTTGGAAAACGCCGCTAATGCTCGATCTTTAG
1 CGGCGTTTTTGGAAAACGCCGCTAATGCTCGATCTTTAG
* * * *
24488031 CGGCGTTTTTGGAAAGCGCCGTTAATGCTTGATGTTTAG
1 CGGCGTTTTTGGAAAACGCCGCTAATGCTCGATCTTTAG
24488070 CGGCGTTTTT
1 CGGCGTTTTT
24488080 TTTATCCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.34
Consensus pattern (39 bp):
CGGCGTTTTTGGAAAACGCCGCTAATGCTCGATCTTTAG
Found at i:24489935 original size:22 final size:22
Alignment explanation
Indices: 24489910--24489971 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
24489900 AACTTTTAAT
* *
24489910 ACACTGGCACAACGCCTGAATA
1 ACACCGGCACAAAGCCTGAATA
*
24489932 ACACCGGCACAAAGCTTGAATA
1 ACACCGGCACAAAGCCTGAATA
*
24489954 ACACCGGCATAAAGCCTG
1 ACACCGGCACAAAGCCTG
24489972 CTAGGCACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.37, C:0.31, G:0.19, T:0.13
Consensus pattern (22 bp):
ACACCGGCACAAAGCCTGAATA
Found at i:24501397 original size:27 final size:27
Alignment explanation
Indices: 24501366--24501447 Score: 121
Period size: 27 Copynumber: 3.0 Consensus size: 27
24501356 TTAGAATACT
24501366 TTGGTTTACTAAATTACTAAAATACCC
1 TTGGTTTACTAAATTACTAAAATACCC
*
24501393 TTGGTTTA-TAAAATTACTAAAATACTC
1 TTGGTTTACT-AAATTACTAAAATACCC
* *
24501420 TTAGTTTACAAAATTACTAAAATACCC
1 TTGGTTTACTAAATTACTAAAATACCC
24501447 T
1 T
24501448 CGACCTGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 48 0.98
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (27 bp):
TTGGTTTACTAAATTACTAAAATACCC
Found at i:24501441 original size:54 final size:54
Alignment explanation
Indices: 24501360--24501502 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 54
24501350 CTTGTTTTAG
* * * ***
24501360 AATACT-TTGGTTTACTAAATTACTAAAATACCCTTGGTTTATAAAATTACTAA
1 AATACTCTTAGTTTACAAAATTACTAAAATACCCTCGACCTATAAAATTACTAA
* *
24501413 AATACTCTTAGTTTACAAAATTACTAAAATACCCTCGACCTGTAAAATTACTGA
1 AATACTCTTAGTTTACAAAATTACTAAAATACCCTCGACCTATAAAATTACTAA
* * * *
24501467 AGTA-TCCTCAGTTTACAAAATTACTGAAATATCCTC
1 AATACT-CTTAGTTTACAAAATTACTAAAATACCCTC
24501503 AGTTTGAAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 7 0.09
54 69 0.91
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (54 bp):
AATACTCTTAGTTTACAAAATTACTAAAATACCCTCGACCTATAAAATTACTAA
Found at i:24501486 original size:27 final size:27
Alignment explanation
Indices: 24501456--24501571 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
24501446 CTCGACCTGT
*
24501456 AAAATTACTGAAGTATCCTCAGTTT-A
1 AAAATTACTGAAATATCCTCAGTTTGA
24501482 CAAAATTACTGAAATATCCTCAGTTTGA
1 -AAAATTACTGAAATATCCTCAGTTTGA
* * * * * *
24501510 AAAATTAC-CAAATAACCCCTGAATTGC
1 AAAATTACTGAAATATCCTCAG-TTTGA
* * *
24501537 AAAATTACTGAAATACCCTTAGTTTGG
1 AAAATTACTGAAATATCCTCAGTTTGA
*
24501564 AGAATTAC
1 AAAATTAC
24501572 CAAAATACCC
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 9 0.13
27 53 0.75
28 9 0.13
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATATCCTCAGTTTGA
Found at i:24501514 original size:54 final size:53
Alignment explanation
Indices: 24501369--24501517 Score: 149
Period size: 54 Copynumber: 2.8 Consensus size: 53
24501359 GAATACTTTG
* * *
24501369 GTTTACTAAATTACTAAAATACCCTTGGTTT-ATAAAATTACTAAAATACTCTTA
1 GTTTACAAAATTACTAAAATACCC-TCGTTTGA-AAAATTACTAAAATACTCTCA
** * * *
24501423 GTTTACAAAATTACTAAAATACCCTCGACCTGTAAAATTACTGAAGTA-TCCTCA
1 GTTTACAAAATTACTAAAATACCCTCG-TTTGAAAAATTACTAAAATACT-CTCA
* *
24501477 GTTTACAAAATTACTGAAATATCCTCAGTTTGAAAAATTAC
1 GTTTACAAAATTACTAAAATACCCTC-GTTTGAAAAATTAC
24501518 CAAATAACCC
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
53 3 0.04
54 74 0.95
55 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.34
Consensus pattern (53 bp):
GTTTACAAAATTACTAAAATACCCTCGTTTGAAAAATTACTAAAATACTCTCA
Found at i:24501522 original size:26 final size:27
Alignment explanation
Indices: 24501369--24501523 Score: 104
Period size: 27 Copynumber: 5.8 Consensus size: 27
24501359 GAATACTTTG
* * * **
24501369 GTTTACTAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACTCAAATATCCTCA
* * *
24501396 GTTTATAAAATTACTAAAATA-CTCTTA
1 GTTTACAAAATTACTCAAATATC-CTCA
* *
24501423 GTTTACAAAATTACTAAAATACCCTCGA
1 GTTTACAAAATTACTCAAATATCCTC-A
* * * *
24501451 CCTGT--AAAATTACTGAAGTATCCTCA
1 -GTTTACAAAATTACTCAAATATCCTCA
*
24501477 GTTTACAAAATTACTGAAATATCCTCA
1 GTTTACAAAATTACTCAAATATCCTCA
24501504 GTTTGA-AAAATTAC-CAAATA
1 GTTT-ACAAAATTACTCAAATA
24501524 ACCCCTGAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
25 2 0.02
26 7 0.07
27 93 0.87
28 3 0.03
29 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (27 bp):
GTTTACAAAATTACTCAAATATCCTCA
Done.