Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 82 of 161
Found at i:25921767 original size:21 final size:19
Alignment explanation
Indices: 25921706--25921764 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
25921696 TCTTTTTCAG
25921706 TTTCTTTTTCTCTCATTTCT
1 TTTC-TTTTCTCTCATTTCT
* * *
25921726 TTTTTTCTTATCTCAAATTCT
1 TTTCTT-TTCTCTC-ATTTCT
25921747 TTTACTTTTCTCTCATTT
1 TTT-CTTTTCTCTCATTT
25921765 TCTCTCATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 2 0.07
20 12 0.40
21 14 0.47
22 2 0.07
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTCTTTTCTCTCATTTCT
Found at i:25925607 original size:21 final size:21
Alignment explanation
Indices: 25925583--25925624 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
25925573 TAGGTGAGTC
25925583 ATTATATGAGTCTTAGGAAAG
1 ATTATATGAGTCTTAGGAAAG
*
25925604 ATTATATGAGTCTTGGGAAAG
1 ATTATATGAGTCTTAGGAAAG
25925625 GTTTAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (21 bp):
ATTATATGAGTCTTAGGAAAG
Found at i:25931491 original size:20 final size:22
Alignment explanation
Indices: 25931461--25931514 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
25931451 ATGGAGGGCT
25931461 AAGACGAGAAAAAA-GAAAAA-A
1 AAGA-GAGAAAAAATGAAAAAGA
25931482 AAGAGAGAAAAAATGAAAAAGA
1 AAGAGAGAAAAAATGAAAAAGA
25931504 AAGAGAGAAAA
1 AAGAGAGAAAA
25931515 GACAACATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.29
21 10 0.32
22 12 0.39
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (22 bp):
AAGAGAGAAAAAATGAAAAAGA
Found at i:25934725 original size:51 final size:51
Alignment explanation
Indices: 25934667--25934903 Score: 284
Period size: 51 Copynumber: 4.6 Consensus size: 51
25934657 CCGGTTCACA
*
25934667 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATACACG
* *** * * *
25934718 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCT-ATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATTTTCATCCGATACACG
* * *
25934769 TAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCC-AGTACACATAG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCA-TCCGA-TACAC---G
*
25934822 TAGTAGCCTGCACATAGTACTACACACATGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATACACG
25934873 TAGTAGCCTGCACATAGTACTACACACGTGA
1 TAGTAGCCTGCACATAGTACTACACACGTGA
25934904 TCTAGTAACT
Statistics
Matches: 155, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 8 0.05
51 99 0.64
52 3 0.02
53 30 0.19
54 8 0.05
55 5 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATACACG
Found at i:25934865 original size:104 final size:101
Alignment explanation
Indices: 25934663--25934898 Score: 298
Period size: 104 Copynumber: 2.3 Consensus size: 101
25934653 ATACCCGGTT
* *
25934663 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TATCATCCGATACACGTAGTAGCCTG
* * *
25934728 CACATAGTACTACACACGTGATCGAAGCTATCCGGTA
65 CACATAGTACTACACACATGATCCAAGCTATCCGATA
*
25934765 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCC-AGTACACATAGTAGTAG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCATATCA-TCCGA-TACAC---GTAGTAG
***
25934828 CCTGCACATAGTACTACACACATGA-CCATTTTCATCCGATA
61 CCTGCACATAGTACTACACACATGATCCAAGCT-ATCCGATA
*
25934869 CACGTAGTAGCCTGCACATAGTACTACACA
1 CACATAGTAGCCTGCACATAGTACTACACA
25934899 CGTGATCTAG
Statistics
Matches: 117, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
100 5 0.04
101 8 0.07
102 35 0.30
103 3 0.03
104 66 0.56
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGCGACCATATCATCCGATACACGTAGTAGCCTGC
ACATAGTACTACACACATGATCCAAGCTATCCGATA
Found at i:25936472 original size:13 final size:13
Alignment explanation
Indices: 25936454--25936479 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25936444 TAGTTAAAAT
25936454 AAATTATATGTAC
1 AAATTATATGTAC
25936467 AAATTATATGTAC
1 AAATTATATGTAC
25936480 CAATGTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
AAATTATATGTAC
Found at i:25941680 original size:129 final size:128
Alignment explanation
Indices: 25941508--25941791 Score: 453
Period size: 129 Copynumber: 2.2 Consensus size: 128
25941498 GTCTGTTCCA
* * **
25941508 CTGTAATCTCAGGGAAATAAGACCTGGTGAGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGATCT-GACAGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
25941573 CTTCATTTTAATCCACTCCACGGT-AATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTT
65 CTTCATTTTAATCCACTCCACGGTAAATC-CAGGGAGATAGGATTACTAGCTTCAATCTGCTCTT
* *
25941637 CTGTAATCTCAGGGAGATAAGATCTGACACGGTCTACTGTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGATCTGACA-GATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
25941702 CTTTATTTTAATCCGCTCCACTGTAAATCCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTT
65 CTTCATTTTAATCCACTCCACGGTAAATCCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTT
25941766 CTGTAATCTCAGGGAGATAAGATCTG
1 CTGTAATCTCAGGGAGATAAGATCTG
25941792 CAATTCTTCG
Statistics
Matches: 144, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
128 2 0.01
129 138 0.96
130 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (128 bp):
CTGTAATCTCAGGGAGATAAGATCTGACAGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC
TTCATTTTAATCCACTCCACGGTAAATCCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTT
Found at i:25941822 original size:45 final size:46
Alignment explanation
Indices: 25941768--25941882 Score: 178
Period size: 45 Copynumber: 2.5 Consensus size: 46
25941758 CTGCTCTTCT
* * * *
25941768 GTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTC-GTTCCACC
1 GTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTGTTCCACC
*
25941813 GTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTGTTCCACT
1 GTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTGTTCCACC
25941859 GTAATCTCAGGGAAATAAGACCTG
1 GTAATCTCAGGGAAATAAGACCTG
25941883 GTACGATCTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
45 33 0.52
46 31 0.48
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (46 bp):
GTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTGTTCCACC
Found at i:25942007 original size:129 final size:129
Alignment explanation
Indices: 25941842--25942526 Score: 492
Period size: 129 Copynumber: 5.2 Consensus size: 129
25941832 ACCTGAAATT
* * * * ** *
25941842 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTACGATCTGCTCTACTGTAACTT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTT
*
25941907 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCA-TGGTAATCTCAGGGAGATAGGATTACTAA
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT-GTAATATCAGGGAGATAGGATTACTAA
* *
25941971 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACTGTAACTT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTT
* * *
25942036 CAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAG
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAA
* * * ** * *
25942100 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGTTCCACCGT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTG--A--C-ACGATCTACTCTACTGT
* * ** * *** * * *
25942165 AA-TCTCAGGGAAATAAGA-CCTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATACG
61 AACT-TCAGAGAGATAAGATCCT-TCATT-TT-AATCCACTCCACTGTAATATCAGGGAGATAGG
* *
25942228 A--CCT-G
122 ATTACTAA
* * * ** * * ** * * *
25942233 GTGCGATCTGCTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TCATTTTAATCCACTCCACGGT
1 CTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATAAGA-CCTGACA---CGATCTACTCTACTGT
* * * * * * ** * * *
25942296 AA-TCTCAGGGAGATAGGATTAC-TAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
61 AACT-TCAGAGAGATAAGA-TCCTTCATTTTAATCCACTCCACTGTAATATCAGGGAGATAGGAT
*
25942359 CTGAC-ATT
124 -T-ACTA-A
*** ** * * * *
25942367 CTTTGGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTT
* *
25942432 CAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAA
*
25942496 CTTTAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAG
25942527 GCAAGGCTTT
Statistics
Matches: 434, Mismatches: 94, Indels: 56
0.74 0.16 0.10
Matches are distributed among these distances:
129 211 0.49
130 6 0.01
131 87 0.20
132 2 0.00
133 40 0.09
134 58 0.13
135 3 0.01
136 27 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (129 bp):
CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTT
CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAA
Found at i:25942252 original size:221 final size:221
Alignment explanation
Indices: 25941971--25942408 Score: 689
Period size: 221 Copynumber: 2.0 Consensus size: 221
25941961 GGATTACTAA
* * * *
25941971 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACTGTAACTT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAACTT
* * * *
25942036 CAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGC
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATATCAGGGAGATAGGATTACTAAC
*
25942101 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG-CAATTCTTCGGTCTGTTCCACCGT
131 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAC-ATTCTTCGGTCTATTCCACCGT
25942165 AATCTCAGGGAAATAAGACCTGAAATT
195 AATCTCAGGGAAATAAGACCTGAAATT
* * * *** *
25942192 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATACGACCTGGTGCGATCTGCTCTACTGTAACTT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAACTT
*
25942257 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGATTACTAAC
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATATCAGGGAGATAGGATTACTAAC
* *
25942322 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACATTCTTTGGTCTATTCCACTGTA
131 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACATTCTTCGGTCTATTCCACCGTA
25942387 ATCTCAGGGAAATAAGACCTGA
196 ATCTCAGGGAAATAAGACCTGA
25942409 CGCGATCTAC
Statistics
Matches: 197, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
221 196 0.99
222 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (221 bp):
CTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAACTT
CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATATCAGGGAGATAGGATTACTAAC
TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACATTCTTCGGTCTATTCCACCGTA
ATCTCAGGGAAATAAGACCTGAAATT
Found at i:25942332 original size:350 final size:349
Alignment explanation
Indices: 25941485--25942364 Score: 1618
Period size: 349 Copynumber: 2.5 Consensus size: 349
25941475 GAGATAAAAT
* * * *
25941485 CTGAAATTCCTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGAGATCTACTCTAC
1 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTAC
25941550 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
66 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
* ** *
25941615 TTACTAGCTTCAATCTGCTCTTCTGTAATCTCAGGGAGATAAGATCTGACACGGTCTACTGTACT
131 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACT
25941680 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAATCCAGGGAGATAGGAT
196 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAATCCAGGGAGATAGGAT
**
25941745 TACTAGCTTCAATCTGCTCTTCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCGTTCC
261 TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCGTTCC
25941810 ACCGTAATCTCAGGGAAATAAGAC
326 ACCGTAATCTCAGGGAAATAAGAC
*
25941834 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTACGATCTGCTCTAC
1 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTAC
*
25941899 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCATGGTAATCTCAGGGAGATAGGA
66 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
25941964 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACT
131 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACT
25942029 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATAT-CAGGGAGATAGGA
196 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-ATCCAGGGAGATAGGA
25942093 TTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGTT
260 TTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTC-GTT
25942158 CCACCGTAATCTCAGGGAAATAAGAC
324 CCACCGTAATCTCAGGGAAATAAGAC
*
25942184 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATACGACCTGGTGCGATCTGCTCTAC
1 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTAC
25942249 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
66 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
25942314 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACA
131 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACA
25942365 TTCTTTGGTC
Statistics
Matches: 514, Mismatches: 15, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
349 305 0.59
350 209 0.41
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (349 bp):
CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTAC
TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACGGTAATCTCAGGGAGATAGGA
TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTGTACT
GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAATCCAGGGAGATAGGAT
TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCGTTCC
ACCGTAATCTCAGGGAAATAAGAC
Found at i:25942409 original size:46 final size:46
Alignment explanation
Indices: 25941588--25942409 Score: 320
Period size: 44 Copynumber: 18.7 Consensus size: 46
25941578 TTTTAATCCA
* * * *
25941588 CTCCACGGTAATCTCAGGGAGATAGGA--TTAC-TAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACAT-TCTTCAATCTG
** * * *
25941632 CTCTTCTGTAATCTCAGGGAGATAAGATCTGACA--CGGTCTA-CTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTC-TTCAATCTG
* ** *
25941676 -T--ACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGA-CCTGACATTCTTCAATCTG
* * *
25941717 CTCCACTGTAAATC-CAGGGAGATAGGA--TTAC-TAGCTTCAATCTG
1 CTCCACTGT-AATCTCAGGGAGATAAGACCTGACAT-TCTTCAATCTG
** * **
25941761 CTCTTCTGTAATCTCAGGGAGATAAGATCTG-CAATTCTTCGGTC-G
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGAC-ATTCTTCAATCTG
* * * * *
25941806 TTCCACCGTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
* * * * *
25941852 TTCCACTGTAATCTCAGGGAAATAAGACCTG-----GTACGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
* * * **
25941893 CTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TCATT-TT-AATCCA
1 CTCCACTGTAATC-TCAGGGAGATAAGA-CCTGACATTCTTCAATCTG
* * *
25941937 CTCCA-TGGTAATCTCAGGGAGATAGGA--TTAC-TAACTTCAATCTG
1 CTCCACT-GTAATCTCAGGGAGATAAGACCTGACAT-TCTTCAATCTG
* * * *
25941981 CTCCGCTGTAATCTCAGGGAGATAAGATCTGACA--CGATCTA-CTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTC-TTCAATCTG
* ** *
25942025 -T--ACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGA-CCTGACATTCTTCAATCTG
* * * *
25942066 CTCCACTGTAATATCAGGGAGATAGGA--TTAC-TAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACAT-TCTTCAATCTG
* * **
25942110 CTCCGCTGTAATCTCAGGGAGATAAGATCTG-CAATTCTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGAC-ATTCTTCAATCTG
* * * * *
25942156 TTCCACCGTAATCTCAGGGAAATAAGACCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
* * * * * *
25942202 TTCCACTGTAATCTCAGGGAAATACGACCTG-----GTGCGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
* * * **
25942243 CTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TCATT-TT-AATCCA
1 CTCCACTGTAATC-TCAGGGAGATAAGA-CCTGACATTCTTCAATCTG
* * * *
25942287 CTCCACGGTAATCTCAGGGAGATAGGA--TTAC-TAACTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACAT-TCTTCAATCTG
* * *** *
25942331 CTCCGCTGTAATCTCAGGGAGATAAGATCTGACATTCTTTGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
* *
25942377 TTCCACTGTAATCTCAGGGAAATAAGACCTGAC
1 CTCCACTGTAATCTCAGGGAGATAAGACCTGAC
25942410 GCGATCTACT
Statistics
Matches: 576, Mismatches: 126, Indels: 150
0.68 0.15 0.18
Matches are distributed among these distances:
40 6 0.01
41 107 0.19
42 14 0.02
43 15 0.03
44 221 0.38
45 51 0.09
46 159 0.28
47 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (46 bp):
CTCCACTGTAATCTCAGGGAGATAAGACCTGACATTCTTCAATCTG
Found at i:25942501 original size:44 final size:44
Alignment explanation
Indices: 25941539--25942526 Score: 236
Period size: 44 Copynumber: 22.6 Consensus size: 44
25941529 ACCTGGTGAG
* * * * *
25941539 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTCATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
* * * * *
25941583 ATCCACTCCACGGTAATCTCAGGGAGATAGGATTACTAGCTTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* ** * ***
25941627 ATCTGCTCTTCTGTAATCTCAGGGAGATAAGA-T-CTGAC-ACG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* ** * * * *
25941668 GTCTACTGTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
** * * *
25941712 ATCCGCTCCACTGTAAATC-CAGGGAGATAGGATTACTAGCTTCA
1 ATCTACTCCACTGT-AATCTCAGGGAGATAAGATTACTAACTTTA
* ** * **
25941756 ATCTGCTCTTCTGTAATCTCAGGGAGATAAGATCTGC-AATTCTTCG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGAT-TACTAA--CTTTA
* * * * *
25941802 GTCGT--TCCACCGTAATCTCAGGGAAATAAGA--CCTGAAATTCTTCA
1 ATC-TACTCCACTGTAATCTCAGGGAGATAAGATTACT--AA--CTTTA
* ** * * ** *
25941847 GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGT-AC---G
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGA-TTACTAACTTTA
* * * * * *
25941888 ATCTGCTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTCATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
* * *
25941932 ATCCACTCCA-TGGTAATCTCAGGGAGATAGGATTACTAACTTCA
1 ATCTACTCCACT-GTAATCTCAGGGAGATAAGATTACTAACTTTA
* * * ***
25941976 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGAC-ACG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
** * * * *
25942017 ATCTACTGTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
** * * * *
25942061 ATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* * * **
25942105 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGC-AATTCTTCG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGAT-TACTAA--CTTTA
* ** * * * *
25942151 GTCTGTTCCACCGTAATCTCAGGGAAATAAGA--CCTGAAATTCTTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACT--AA--CTTTA
* ** * * * ** ***
25942197 GTCTGTTCCACTGTAATCTCAGGGAAATACGA--CCT-GGTGCG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* * * * * *
25942238 ATCTGCTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTCATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
* * * *
25942282 ATCCACTCCACGGTAATCTCAGGGAGATAGGATTACTAACTTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* * * *
25942326 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAC-ATTCTTTG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-ACTTTA
* * * * * ***
25942372 GTCTATTCCACTGTAATCTCAGGGAAATAAGA--CCTGAC-GCG
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
** * * * *
25942413 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTA
1 ATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAACTTTA
* *
25942457 ATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTTA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
* *
25942501 ATCTGCTCCGCTGTAATCTCAGGGAG
1 ATCTACTCCACTGTAATCTCAGGGAG
25942527 GCAAGGCTTT
Statistics
Matches: 696, Mismatches: 188, Indels: 120
0.69 0.19 0.12
Matches are distributed among these distances:
39 1 0.00
40 6 0.01
41 131 0.19
42 16 0.02
43 15 0.02
44 330 0.47
45 58 0.08
46 137 0.20
47 1 0.00
49 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTTA
Found at i:25942658 original size:88 final size:87
Alignment explanation
Indices: 25942523--25942852 Score: 398
Period size: 88 Copynumber: 3.8 Consensus size: 87
25942513 GTAATCTCAG
* * * * * * * * ** *
25942523 GGAGGCAAGGCTT-TGTTTTTGATCTGCTTCGTTGTTAACGCATGAAGGCAAGATCTGCTATCTT
1 GGAGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTT
*
25942587 CAACTAGCTCCACTGC-C-ACCGA
66 CAACCAGCTCCA-T-CACAACCGA
*
25942609 TGGAGGCAAGGTTTATGTTTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCT
1 -GGAGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCT
25942674 TCAACCAGCTCCATCACAACCGAA
65 TCAACCAGCTCCATCACAACCG-A
* * *
25942698 AGAGGCAAGGTTTGA-GTCTTCGACCTGCTTCGCTTTCAATGCAGGAAGGCAAGGTCTTTTGTCT
1 GGAGGCAAGGTTT-ATGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCT
*
25942762 TCAACCAGCTCTATCACAACCGA
65 TCAACCAGCTCCATCACAACCGA
* * *
25942785 GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGACAAGATCTTTTGTCT
1 G-GAGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCT
25942850 TCA
65 TCA
25942853 CTGATCTGTT
Statistics
Matches: 214, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
86 1 0.00
87 15 0.07
88 196 0.92
89 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (87 bp):
GGAGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTT
CAACCAGCTCCATCACAACCGA
Found at i:25942660 original size:44 final size:44
Alignment explanation
Indices: 25942612--25942838 Score: 146
Period size: 44 Copynumber: 5.2 Consensus size: 44
25942602 CCACCGATGG
*
25942612 AGGCAAGGTTTATGTTTTCGACCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * ** * * *
25942656 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-CATCACAACCGAAAG-
1 AGGCAAGGT-TTATGTCTTCGACCTGCTTCGC-TGTCAA-TGCAGGA
*
25942700 AGGCAAGGTTTGA-GTCTTCGACCTGCTTCGCTTTCAATGCAGGA
1 AGGCAAGGTTT-ATGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
* * * * * *
25942744 AGGCAAGGTCTTTTGTCTTCAACCAGC-T--CTATCACA-ACCGAGA
1 AGGCAAGGT-TTATGTCTTCGACCTGCTTCGCTGTCA-ATGCAG-GA
* *
25942787 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGA
1 -AGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
*
25942832 AGACAAG
1 AGGCAAG
25942839 ATCTTTTGTC
Statistics
Matches: 134, Mismatches: 33, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
42 7 0.05
43 34 0.25
44 54 0.40
45 33 0.25
46 6 0.04
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTATGTCTTCGACCTGCTTCGCTGTCAATGCAGGA
Found at i:25945016 original size:9 final size:9
Alignment explanation
Indices: 25944997--25945034 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
25944987 TATTTTTGAC
*
25944997 TTTGGTTTT
1 TTTGATTTT
25945006 TTT-ATTTT
1 TTTGATTTT
25945014 TTTGATTTT
1 TTTGATTTT
25945023 TTTGATTTT
1 TTTGATTTT
25945032 TTT
1 TTT
25945035 TTGAGTCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.08, C:0.00, G:0.11, T:0.82
Consensus pattern (9 bp):
TTTGATTTT
Found at i:25945022 original size:17 final size:18
Alignment explanation
Indices: 25944997--25945034 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
25944987 TATTTTTGAC
*
25944997 TTTGGTTTTTTT-ATTTT
1 TTTGATTTTTTTGATTTT
25945014 TTTGATTTTTTTGATTTT
1 TTTGATTTTTTTGATTTT
25945032 TTT
1 TTT
25945035 TTGAGTCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.08, C:0.00, G:0.11, T:0.82
Consensus pattern (18 bp):
TTTGATTTTTTTGATTTT
Found at i:25950214 original size:21 final size:20
Alignment explanation
Indices: 25950184--25950228 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
25950174 CAGTTACGAA
25950184 AAAAGAAAAAA-AAATAAAGAG
1 AAAAGAAAAAATAAA-AAAG-G
*
25950205 AAAAGTAAAAATAAAAAAGG
1 AAAAGAAAAAATAAAAAAGG
25950225 AAAA
1 AAAA
25950229 TAGAACTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 14 0.64
22 3 0.14
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAAATAAAAAAGG
Found at i:25951444 original size:21 final size:21
Alignment explanation
Indices: 25951418--25951480 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
25951408 ATTTAATTTT
25951418 TTTCTTTTATATTCTTTTAAC
1 TTTCTTTTATATTCTTTTAAC
* * *
25951439 TTTCTTTTTTATTATTTT-CC
1 TTTCTTTTATATTCTTTTAAC
* *
25951459 TCTCTTTTCTATTTCTTTTAAC
1 TTTCTTTTATA-TTCTTTTAAC
25951481 GTATTTTTTC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 10 0.30
21 22 0.67
22 1 0.03
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTCTTTTATATTCTTTTAAC
Found at i:25951489 original size:42 final size:41
Alignment explanation
Indices: 25951420--25951498 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 41
25951410 TTAATTTTTT
*
25951420 TCTTTTATATTCTTTTAACTTTCTTTTT-TATTATTTTCCTC
1 TCTTTTATATTCTTTTAACTATCTTTTTCTA-TATTTTCCTC
*
25951461 TCTTTTCTATTTCTTTTAACGTAT-TTTTTCTATATTTT
1 TCTTTTATA-TTCTTTTAAC-TATCTTTTTCTATATTTT
25951499 TTATTTGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
41 8 0.24
42 21 0.64
43 4 0.12
ACGTcount: A:0.15, C:0.15, G:0.01, T:0.68
Consensus pattern (41 bp):
TCTTTTATATTCTTTTAACTATCTTTTTCTATATTTTCCTC
Found at i:25951544 original size:27 final size:29
Alignment explanation
Indices: 25951490--25951544 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
25951480 CGTATTTTTT
25951490 CTATATTTTTTATTTGTTAAAACTAATTC
1 CTATATTTTTTATTTGTTAAAACTAATTC
*
25951519 CTATA-TTTTTATTTTTTAAAAC-AATT
1 CTATATTTTTTATTTGTTAAAACTAATT
25951545 TAATTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 16 0.64
29 5 0.20
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (29 bp):
CTATATTTTTTATTTGTTAAAACTAATTC
Found at i:25951613 original size:66 final size:66
Alignment explanation
Indices: 25951536--25951672 Score: 256
Period size: 66 Copynumber: 2.1 Consensus size: 66
25951526 TTTATTTTTT
25951536 AAAACAATTTAATTTTTTCCAGTGAGGCGAGCTCGTGGACTAATTTTAACAAATGGAAAACATAG
1 AAAACAATTTAATTTTTTCCAGTGAGGCGAGCTCGTGGACTAATTTTAACAAATGGAAAACATAG
25951601 A
66 A
* *
25951602 AAAACAATTTAATTTTTTCGAGTGAGGCGAGCTTGTGGACTAATTTTAACAAATGGAAAACATAG
1 AAAACAATTTAATTTTTTCCAGTGAGGCGAGCTCGTGGACTAATTTTAACAAATGGAAAACATAG
25951667 A
66 A
25951668 AAAAC
1 AAAAC
25951673 TACGTTAAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (66 bp):
AAAACAATTTAATTTTTTCCAGTGAGGCGAGCTCGTGGACTAATTTTAACAAATGGAAAACATAG
A
Found at i:25955111 original size:16 final size:15
Alignment explanation
Indices: 25955088--25955132 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 15
25955078 AATTTTTGAA
*
25955088 AAATAATTATTTTAT
1 AAATAATTAATTTAT
25955103 AAATAAATTAATTTAT
1 AAAT-AATTAATTTAT
*
25955119 AAA-AATTAAATTAT
1 AAATAATTAATTTAT
25955133 TAATTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 10 0.37
15 4 0.15
16 13 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATAATTAATTTAT
Found at i:25955159 original size:25 final size:23
Alignment explanation
Indices: 25955102--25955162 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
25955092 AATTATTTTA
25955102 TAAATAAATTAA-TTTATAAAAAT
1 TAAA-AAATTAATTTTATAAAAAT
** *
25955125 TAAATTATTAATTTTCATTAAAAT
1 TAAAAAATTAATTTT-ATAAAAAT
25955149 TCAAAAAATTAATT
1 T-AAAAAATTAATT
25955163 ATTTTATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 5 0.17
23 7 0.23
24 8 0.27
25 10 0.33
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAAAAATTAATTTTATAAAAAT
Found at i:25957841 original size:43 final size:43
Alignment explanation
Indices: 25957774--25957957 Score: 226
Period size: 43 Copynumber: 4.3 Consensus size: 43
25957764 CTATTGACAC
* *
25957774 CGCCGCTATAGAACAAGACCTTTAGCAGCGCTTTTCACACAAA
1 CGCCGCTATAGAACAAGACTTTTAGCAGCGCTTTTCCCACAAA
* * *
25957817 CTCCGCTATAGAACAAGACTTTTAGCAGCGCTTTTTCCATAAA
1 CGCCGCTATAGAACAAGACTTTTAGCAGCGCTTTTCCCACAAA
* * * *
25957860 CGCCACTAAAGATCATGACTTTTAGCAGCGCTTTTCCCACAAA
1 CGCCGCTATAGAACAAGACTTTTAGCAGCGCTTTTCCCACAAA
* * *
25957903 CGCCGCTATA-AGTCATGACTTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTATAGA-ACAAGACTTTTAGCAGCGCTTTTCCCACAAA
**
25957946 CGCTACTATAGA
1 CGCCGCTATAGA
25957958 GAAAACACCG
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 120 0.98
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (43 bp):
CGCCGCTATAGAACAAGACTTTTAGCAGCGCTTTTCCCACAAA
Found at i:25957986 original size:146 final size:145
Alignment explanation
Indices: 25957814--25958090 Score: 335
Period size: 146 Copynumber: 1.9 Consensus size: 145
25957804 CTTTTCACAC
* * * *
25957814 AAACTCCGCTATAGAACAAGACTTTTAGC-AGCGCTTTTTCCATAAACGCCACTA-AAGATCATG
1 AAACACCGCTATAGAACAAGACTTTTAGCGA-CGCTTTTACCACAAACGCCACTATAA-ATCATC
* * *
25957877 ACTTTTAGCAGCGCTTTTCCCACAAACGCCGCTATAAG-TCATGACTTTTAGCGGCGCTTTTCCC
64 ACTTTTAGCAGCGCTTTTCCCACAAACGCCGC-AAAAGATCA-GACCTTTAGCGGCGCTTTTCAC
25957941 ACAAACGCTACTATAGAGA
127 ACAAACGCTACTATAGAGA
** * * * **
25957960 AAACACCGCTATAGGTCATGACTTTTATCGACGCTTTTACCACAAATGCGGCTATAAATCATCAC
1 AAACACCGCTATAGAACAAGACTTTTAGCGACGCTTTTACCACAAACGCCACTATAAATCATCAC
** * *
25958025 TTTTAGTGGCGCTTTTCTCACAAACGCCGCAAAAGATCAGACCTTTAGCGTCGCTTTTCACACAA
66 TTTTAGCAGCGCTTTTCCCACAAACGCCGCAAAAGATCAGACCTTTAGCGGCGCTTTTCACACAA
25958090 A
131 A
25958091 TGCCGCTAAA
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
145 28 0.25
146 79 0.72
147 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (145 bp):
AAACACCGCTATAGAACAAGACTTTTAGCGACGCTTTTACCACAAACGCCACTATAAATCATCAC
TTTTAGCAGCGCTTTTCCCACAAACGCCGCAAAAGATCAGACCTTTAGCGGCGCTTTTCACACAA
ACGCTACTATAGAGA
Found at i:25958015 original size:60 final size:60
Alignment explanation
Indices: 25957900--25958015 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
25957890 CTTTTCCCAC
* * * *
25957900 AAACGCCGCTATAAGTCATGACTTTTAGCGGCGCTTTTCCCACAAACGCTACTATAGAGA
1 AAACACCGCTATAAGTCATGACTTTTAGCGACGCTTTTACCACAAACGCGACTATAGAGA
* * * *
25957960 AAACACCGCTATAGGTCATGACTTTTATCGACGCTTTTACCACAAATGCGGCTATA
1 AAACACCGCTATAAGTCATGACTTTTAGCGACGCTTTTACCACAAACGCGACTATA
25958016 AATCATCACT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (60 bp):
AAACACCGCTATAAGTCATGACTTTTAGCGACGCTTTTACCACAAACGCGACTATAGAGA
Found at i:25958433 original size:43 final size:43
Alignment explanation
Indices: 25958367--25958453 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
25958357 ACATATGCAA
* *
25958367 GGTAATAAAACATTCAATGCATTTTCTTAATC-AAGTAAATCTT
1 GGTAATAAAACATTCAATACATTTACTTAATCAAAG-AAATCTT
*
25958410 GGTAATAAAAGATAT-AATACATTTACTTAATCAAAGAAATCTT
1 GGTAATAAAACAT-TCAATACATTTACTTAATCAAAGAAATCTT
25958453 G
1 G
25958454 TACATCATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATTCAATACATTTACTTAATCAAAGAAATCTT
Found at i:25961173 original size:16 final size:16
Alignment explanation
Indices: 25961151--25961219 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
25961141 GAGAGTTCGC
25961151 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
25961167 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
25961183 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
25961200 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
25961216 TGTA
1 TGTA
25961220 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:25961197 original size:33 final size:32
Alignment explanation
Indices: 25961151--25961219 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
25961141 GAGAGTTCGC
25961151 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
25961183 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
25961216 TGTA
1 TGTA
25961220 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:25961476 original size:18 final size:17
Alignment explanation
Indices: 25961455--25961489 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25961445 TTATTATTAA
*
25961455 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
25961473 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25961490 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:25966619 original size:45 final size:46
Alignment explanation
Indices: 25966531--25966621 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
25966521 AAAATATGTC
*
25966531 TATAGTGATTGTATTTTTTGAAAATTTCAAAGTAGGAAATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
* * *
25966577 TATAGTGGTTGTATTTTTTAAAAATTTTATAGTAGG-AATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
25966622 CTGTGAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 9 0.22
46 32 0.78
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.48
Consensus pattern (46 bp):
TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
Found at i:25966674 original size:25 final size:26
Alignment explanation
Indices: 25966636--25966684 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
25966626 GAAGAATAAG
*
25966636 TTTTATTATAAAAATCATGTTTAATT
1 TTTTATTATAAAAATCAAGTTTAATT
*
25966662 TTTTATT-TCAAAATCAAGTTTAA
1 TTTTATTATAAAAATCAAGTTTAA
25966685 GAATTGGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (26 bp):
TTTTATTATAAAAATCAAGTTTAATT
Found at i:25966958 original size:23 final size:23
Alignment explanation
Indices: 25966928--25966973 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
25966918 AGAAGCTAGT
25966928 ATGTAACTTAATCAGGCAGCAGA
1 ATGTAACTTAATCAGGCAGCAGA
25966951 ATGTAACTTAATCAGGCAGCAGA
1 ATGTAACTTAATCAGGCAGCAGA
25966974 CATGAAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (23 bp):
ATGTAACTTAATCAGGCAGCAGA
Found at i:25968280 original size:22 final size:22
Alignment explanation
Indices: 25968250--25968292 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
25968240 CTAACCCGAC
* *
25968250 CCTTGAATCCTTAAATCCTAAA
1 CCTTAAATCCCTAAATCCTAAA
*
25968272 CCTTAAATCCCTAACTCCTAA
1 CCTTAAATCCCTAAATCCTAA
25968293 TCCCTAACCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.33, G:0.02, T:0.30
Consensus pattern (22 bp):
CCTTAAATCCCTAAATCCTAAA
Found at i:25968291 original size:7 final size:7
Alignment explanation
Indices: 25968281--25968328 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
25968271 ACCTTAAATC
25968281 CCTAACT
1 CCTAACT
25968288 CCTAA-T
1 CCTAACT
25968294 CCCTAAC-
1 -CCTAACT
25968301 CACTAACT
1 C-CTAACT
*
25968309 CCTAACC
1 CCTAACT
25968316 CCTAACT
1 CCTAACT
25968323 CCTAAC
1 CCTAAC
25968329 CCTTAAACCT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
6 2 0.06
7 32 0.91
8 1 0.03
ACGTcount: A:0.31, C:0.46, G:0.00, T:0.23
Consensus pattern (7 bp):
CCTAACT
Found at i:25968294 original size:28 final size:27
Alignment explanation
Indices: 25968263--25968335 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 27
25968253 TGAATCCTTA
*
25968263 AATCCTAAACCTTAAATCCCTAACTCCT
1 AATCCTAAACCTTAAAT-CCTAACCCCT
* *
25968291 AATCCCT-AACCACTAACTCCTAACCCCT
1 AAT-CCTAAACC-TTAAATCCTAACCCCT
*
25968319 AACTCCTAACCCTTAAA
1 AA-TCCTAAACCTTAAA
25968336 CCTTAAATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
28 24 0.69
29 11 0.31
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.25
Consensus pattern (27 bp):
AATCCTAAACCTTAAATCCTAACCCCT
Found at i:25968327 original size:21 final size:20
Alignment explanation
Indices: 25968280--25968328 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
25968270 AACCTTAAAT
*
25968280 CCCTAACTCCTAATCCCTAA
1 CCCTAACTCCTAACCCCTAA
25968300 CCACTAACTCCTAACCCCTAA
1 CC-CTAACTCCTAACCCCTAA
25968321 CTCCTAAC
1 C-CCTAAC
25968329 CCTTAAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 23 0.88
22 1 0.04
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (20 bp):
CCCTAACTCCTAACCCCTAA
Found at i:25968648 original size:7 final size:7
Alignment explanation
Indices: 25968636--25968839 Score: 67
Period size: 7 Copynumber: 28.4 Consensus size: 7
25968626 ACTAGTTAAT
25968636 CTAAACC
1 CTAAACC
25968643 CTAAACC
1 CTAAACC
*
25968650 ATAAA-C
1 CTAAACC
*
25968656 TTAAACC
1 CTAAACC
25968663 CTAAAACC
1 CT-AAACC
25968671 CTAAAACC
1 CT-AAACC
25968679 CTAAAACC
1 CT-AAACC
*
25968687 ATAAACC
1 CTAAACC
* * *
25968694 TTTAACA
1 CTAAACC
25968701 C-ATAACC
1 CTA-AACC
25968708 TCTAAA-C
1 -CTAAACC
25968715 CTCAAACC
1 CT-AAACC
*
25968723 CT-AGCC
1 CTAAACC
*
25968729 TTTAAACC
1 -CTAAACC
*
25968737 ATAAACC
1 CTAAACC
*
25968744 ATAAACC
1 CTAAACC
* *
25968751 ATAACCC
1 CTAAACC
25968758 CTAAACC
1 CTAAACC
*
25968765 CATAATCC
1 C-TAAACC
*
25968773 ATAAACC
1 CTAAACC
* *
25968780 TTAAAACG
1 CT-AAACC
*
25968788 GT-AACAC
1 CTAAAC-C
25968795 CTAAACC
1 CTAAACC
* * *
25968802 TTAAGCT
1 CTAAACC
25968809 CTAAACC
1 CTAAACC
* *
25968816 ATATACC
1 CTAAACC
25968823 CTAAACC
1 CTAAACC
**
25968830 AAAAACC
1 CTAAACC
25968837 CTA
1 CTA
25968840 TACTCTAACG
Statistics
Matches: 145, Mismatches: 39, Indels: 26
0.69 0.19 0.12
Matches are distributed among these distances:
6 13 0.09
7 87 0.60
8 44 0.30
9 1 0.01
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:25968671 original size:8 final size:8
Alignment explanation
Indices: 25968658--25968691 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
25968648 CCATAAACTT
25968658 AAACCCTA
1 AAACCCTA
25968666 AAACCCTA
1 AAACCCTA
25968674 AAACCCTA
1 AAACCCTA
*
25968682 AAACCATA
1 AAACCCTA
25968690 AA
1 AA
25968692 CCTTTAACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.56, C:0.32, G:0.00, T:0.12
Consensus pattern (8 bp):
AAACCCTA
Found at i:25968715 original size:37 final size:36
Alignment explanation
Indices: 25968635--25968715 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 36
25968625 CACTAGTTAA
*
25968635 TCTAAACCCTAAACCATAAACTTAAACCCTAAAACC
1 TCTAAACCCTAAACCATAAACTTAAACACTAAAACC
* *
25968671 -CTAAAACCCTAAAACCATAAACCTTTAACAC-ATAACC
1 TCT-AAACCCT-AAACCATAAA-CTTAAACACTAAAACC
25968708 TCTAAACC
1 TCTAAACC
25968716 TCAAACCCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
35 2 0.05
36 7 0.18
37 20 0.53
38 9 0.24
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (36 bp):
TCTAAACCCTAAACCATAAACTTAAACACTAAAACC
Found at i:25968856 original size:13 final size:13
Alignment explanation
Indices: 25968838--25968864 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25968828 CCAAAAACCC
25968838 TATACTCTAACGA
1 TATACTCTAACGA
25968851 TATACTCTAACGA
1 TATACTCTAACGA
25968864 T
1 T
25968865 TATATAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TATACTCTAACGA
Found at i:25969038 original size:40 final size:40
Alignment explanation
Indices: 25968994--25969070 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
25968984 TTAAATCCCT
* *
25968994 GAGCAGTAGCGGCGCTTTTTAGAAAA-CGCCACTAAAAATA
1 GAGCAGTAGCGGAGCTTTAT-GAAAATCGCCACTAAAAATA
* *
25969034 GAGCATTCGCGGAGCTTTATGAAAATCGCCACTAAAA
1 GAGCAGTAGCGGAGCTTTATGAAAATCGCCACTAAAA
25969071 GCCCTGAGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 5 0.16
40 27 0.84
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (40 bp):
GAGCAGTAGCGGAGCTTTATGAAAATCGCCACTAAAAATA
Found at i:25969124 original size:41 final size:41
Alignment explanation
Indices: 25968985--25969361 Score: 445
Period size: 41 Copynumber: 9.2 Consensus size: 41
25968975 TAAATTATTT
* * * *
25968985 TAAATCCCTGAGCAGTAGCGGCGCTTT-TTAGAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
** * * * * * *
25969026 TAAA--AATAGAGCATTCGCGGAGCTTTATGAAAATCGCCAC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
25969066 TAAAAGCCCTGAGCATTAGCGACGCTTTCTCAAAAATGCCGC
1 T-AAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
25969108 TAAAGCCCTGAGCATTAGCGGTGCTTTCTCAAAAAAGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
** *
25969149 TAAATTCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * *
25969190 TAAATCCCTGAGCATTAGCTGCGCTTTATCAAAAACACCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
*
25969231 TAAAACCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
**
25969272 TAAAGCCCTGAGCATTAGCTACGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
25969313 TAAATCCCTTAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
25969354 TAAAGCCC
1 TAAAGCCC
25969362 CGAAAGCTCA
Statistics
Matches: 288, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.00
40 25 0.09
41 236 0.82
42 25 0.09
43 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:25969459 original size:39 final size:39
Alignment explanation
Indices: 25969416--25969530 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 39
25969406 CACTTTTTGG
* * * *
25969416 AAAGCACCGCTAATGCTTGTTTTTAGAGGCGTTTTCCAA
1 AAAGCGCCGCTAATGCTAGTCTTTAGCGGCGTTTTCCAA
* *
25969455 AAAGCGCCGCTAATACTCAATCTTTAGCGGCGTTTTCCAA
1 AAAGCGCCGCTAATGCT-AGTCTTTAGCGGCGTTTTCCAA
*
25969495 AAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTT
1 AAAGCGCCGCTAATGCTAG-TCTTTAGCGGCGTTTT
25969531 TTATCCAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 15 0.23
40 50 0.77
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (39 bp):
AAAGCGCCGCTAATGCTAGTCTTTAGCGGCGTTTTCCAA
Found at i:25969490 original size:40 final size:40
Alignment explanation
Indices: 25969437--25969530 Score: 161
Period size: 40 Copynumber: 2.4 Consensus size: 40
25969427 AATGCTTGTT
*
25969437 TTTAGAGGCGTTTTCCAAAAAGCGCCGCTAATACTCAATC
1 TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCAATC
* *
25969477 TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATC
1 TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCAATC
25969517 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
25969531 TTATCCAAAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (40 bp):
TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCAATC
Found at i:25971175 original size:13 final size:13
Alignment explanation
Indices: 25971157--25971181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25971147 AGTCAAAAAA
25971157 TTGAATTTGAAAC
1 TTGAATTTGAAAC
25971170 TTGAATTTGAAA
1 TTGAATTTGAAA
25971182 ATTGGACCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGAATTTGAAAC
Found at i:25971557 original size:8 final size:8
Alignment explanation
Indices: 25971544--25971571 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
25971534 AAAATAATAT
25971544 TATTTTAA
1 TATTTTAA
25971552 TATTTTAA
1 TATTTTAA
25971560 TATTTTAA
1 TATTTTAA
25971568 TATT
1 TATT
25971572 AAATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTTTAA
Found at i:25978282 original size:15 final size:15
Alignment explanation
Indices: 25978262--25978291 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25978252 ATCCTAGACA
25978262 TGCACTTCTCATTAC
1 TGCACTTCTCATTAC
25978277 TGCACTTCTCATTAC
1 TGCACTTCTCATTAC
25978292 CATACTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40
Consensus pattern (15 bp):
TGCACTTCTCATTAC
Found at i:25978298 original size:15 final size:15
Alignment explanation
Indices: 25978264--25978302 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
25978254 CCTAGACATG
**
25978264 CACTTCTCATTACTG
1 CACTTCTCATTACCA
25978279 CACTTCTCATTACCA
1 CACTTCTCATTACCA
*
25978294 TACTTCTCA
1 CACTTCTCA
25978303 CGGTTATCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.23, C:0.36, G:0.03, T:0.38
Consensus pattern (15 bp):
CACTTCTCATTACCA
Found at i:25983309 original size:24 final size:23
Alignment explanation
Indices: 25983261--25983318 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
25983251 TAATCAAACA
25983261 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
25983285 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
25983309 TTATT-TTATA
1 TTATTATTATA
25983319 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:25985266 original size:40 final size:40
Alignment explanation
Indices: 25985206--25985322 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
25985196 CGAATACACG
* * * * *
25985206 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25985246 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25985286 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
25985323 TTAGTAACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:25985347 original size:40 final size:40
Alignment explanation
Indices: 25985219--25985401 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
25985209 CCAGCATGAT
* * *
25985219 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
25985259 TGCTCTTCGGGACTTAGCCCGGATACA-TCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
25985299 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
25985340 TGC-CTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAA
*
25985380 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
25985402 CATCATTCGA
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 98 0.82
41 18 0.15
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA
Found at i:25985746 original size:29 final size:29
Alignment explanation
Indices: 25985707--25985785 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
25985697 CTTAATAATC
*
25985707 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
25985737 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
25985766 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
25985786 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:25987923 original size:46 final size:46
Alignment explanation
Indices: 25987856--25987994 Score: 224
Period size: 46 Copynumber: 3.0 Consensus size: 46
25987846 TCACATTGCT
* *
25987856 ATAACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTC
1 ATAACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTC
*
25987902 ATAACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTC
1 ATAACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTC
* * *
25987948 ATAACTCAATATGGCTTTCTTCACCGAAACACCATACCTACCTTTC
1 ATAACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTC
25987994 A
1 A
25987995 CACTTTGCCA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (46 bp):
ATAACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTC
Found at i:25988786 original size:17 final size:16
Alignment explanation
Indices: 25988740--25988780 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
25988730 TTAAATCGCA
*
25988740 AAAAATTCACTAAATC
1 AAAAATTCACTAATTC
25988756 ACAAAATTCACTAATTC
1 A-AAAATTCACTAATTC
25988773 AAAAATTC
1 AAAAATTC
25988781 TTCTAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATTCACTAATTC
Found at i:26009442 original size:15 final size:17
Alignment explanation
Indices: 26009410--26009446 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
26009400 TTGCACACTG
*
26009410 TTTTTTTAAATTCGAAA
1 TTTTTTTAAACTCGAAA
26009427 TTTTTTT-AACTC-AAA
1 TTTTTTTAAACTCGAAA
26009442 TTTTT
1 TTTTT
26009447 ATCACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTTTTTAAACTCGAAA
Found at i:26011443 original size:17 final size:17
Alignment explanation
Indices: 26011421--26011455 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26011411 CATTTCACTA
*
26011421 TTATGTCTTTTGTATTT
1 TTATGTCTTTTATATTT
26011438 TTATGTCTTTTATATTT
1 TTATGTCTTTTATATTT
26011455 T
1 T
26011456 GCATGCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.06, G:0.09, T:0.71
Consensus pattern (17 bp):
TTATGTCTTTTATATTT
Found at i:26012793 original size:37 final size:36
Alignment explanation
Indices: 26012730--26012837 Score: 95
Period size: 37 Copynumber: 3.1 Consensus size: 36
26012720 ATTCTGGAAA
*
26012730 TAATATTATTTTAATAGTTTAATATTAAATTAAATT
1 TAATATTATTGTAATAGTTTAATATTAAATTAAATT
*
26012766 TAATAGTTATTGTAATAG--T-AT-TT-TATT-AATT
1 TAATA-TTATTGTAATAGTTTAATATTAAATTAAATT
* * *
26012797 TAATATTAATGTGATTA-TCTTAATATTAAATTTAATT
1 TAATATTATTGT-AATAGT-TTAATATTAAATTAAATT
26012834 TAAT
1 TAAT
26012838 GTTTATCTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
30 6 0.10
31 12 0.21
32 3 0.05
33 3 0.05
34 4 0.07
35 3 0.05
36 8 0.14
37 19 0.33
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.53
Consensus pattern (36 bp):
TAATATTATTGTAATAGTTTAATATTAAATTAAATT
Found at i:26012824 original size:31 final size:29
Alignment explanation
Indices: 26012789--26012846 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 29
26012779 AATAGTATTT
26012789 TATT-AATTTAATATTAATGTGATTATCTTAA
1 TATTAAATTTAAT-TTAATGT--TTATCTTAA
26012820 TATTAAATTTAATTTAATGTTTATCTT
1 TATTAAATTTAATTTAATGTTTATCTT
26012847 GTAGATAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 7 0.27
31 11 0.42
32 8 0.31
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.55
Consensus pattern (29 bp):
TATTAAATTTAATTTAATGTTTATCTTAA
Found at i:26014815 original size:18 final size:18
Alignment explanation
Indices: 26014788--26014823 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26014778 AATAGTATAG
*
26014788 CAATTTGGTATTGTTTTA
1 CAATTAGGTATTGTTTTA
26014806 CAATTAGGTATTGTTTTA
1 CAATTAGGTATTGTTTTA
26014824 GTATCGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.53
Consensus pattern (18 bp):
CAATTAGGTATTGTTTTA
Found at i:26017103 original size:16 final size:16
Alignment explanation
Indices: 26017082--26017116 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26017072 AGTCCTTGTA
26017082 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
26017098 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
26017114 ATT
1 ATT
26017117 AAAATTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:26020894 original size:20 final size:19
Alignment explanation
Indices: 26020860--26020918 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
26020850 TAAAATTAAT
*
26020860 CGAGCT-AAAGAGCTAATAA
1 CGAGCTCAATGAGCTAA-AA
*
26020879 CGAGCTCAATGAGCTAAAT
1 CGAGCTCAATGAGCTAAAA
* *
26020898 TGAGCTCGAATGAGCTGAAA
1 CGAGCTC-AATGAGCTAAAA
26020918 C
1 C
26020919 AAAAATTATC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (19 bp):
CGAGCTCAATGAGCTAAAA
Found at i:26022909 original size:6 final size:6
Alignment explanation
Indices: 26022900--26022969 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
26022890 TTGTTTTCAC
* ** ** * **
26022900 TTTCTT TTTCTC TCACTT TTTCGA TTTCTT TTTCTT TTGCAA TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
*
26022948 TTTCTT TTTCGT TTTCTT TTTC
1 TTTCTT TTTCTT TTTCTT TTTC
26022970 GATTTCATTA
Statistics
Matches: 46, Mismatches: 18, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.06, C:0.20, G:0.04, T:0.70
Consensus pattern (6 bp):
TTTCTT
Found at i:26022975 original size:18 final size:18
Alignment explanation
Indices: 26022915--26022969 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
26022905 TTTTCTCTCA
26022915 CTTTTTCGATTTCTTTTT
1 CTTTTTCGATTTCTTTTT
* *
26022933 CTTTTGCAATTTCTTTTT
1 CTTTTTCGATTTCTTTTT
*
26022951 CTTTTTCGTTTTCTTTTT
1 CTTTTTCGATTTCTTTTT
26022969 C
1 C
26022970 GATTTCATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.71
Consensus pattern (18 bp):
CTTTTTCGATTTCTTTTT
Found at i:26026074 original size:28 final size:27
Alignment explanation
Indices: 26026033--26026099 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 27
26026023 TTTTGTGATA
*
26026033 AATGTGT-TATATTTTATTACATGTTATT
1 AATGTGTCTA-ATTTTATTACATGCT-TT
26026061 AATGTGTCTAATTTTATTACATGCTTT
1 AATGTGTCTAATTTTATTACATGCTTT
26026088 AATGATGTCTAA
1 AATG-TGTCTAA
26026100 GTCTTAGCCG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
27 6 0.17
28 28 0.78
29 2 0.06
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (27 bp):
AATGTGTCTAATTTTATTACATGCTTT
Found at i:26029343 original size:79 final size:78
Alignment explanation
Indices: 26029241--26029463 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
26029231 GCTCCTCGTT
* *
26029241 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26029306 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
26029321 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
26029385 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
26029399 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
26029462 GA
63 GA
26029464 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:26029358 original size:39 final size:40
Alignment explanation
Indices: 26029241--26029463 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
26029231 GCTCCTCGTT
* *
26029241 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
26029281 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26029321 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26029360 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
26029399 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
26029440 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26029464 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:26031109 original size:28 final size:28
Alignment explanation
Indices: 26031066--26031256 Score: 292
Period size: 28 Copynumber: 6.8 Consensus size: 28
26031056 GGCTGTCACA
*
26031066 GTGGGCCTTAGCCCAATACAGCAACAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
* *
26031094 ATAGGCCTTAGCCCAATACAGTAACAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
*
26031122 GTGGGCCTTAGCCCAATACAATAACAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
*
26031150 GTGGGCCTTAGCCCAATATAGTAACAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
* *
26031178 GTGGGCCTTAGCCCAATACAATAATAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
26031206 GTGGGCCTTAGCCCAATACAGTAACAAT
1 GTGGGCCTTAGCCCAATACAGTAACAAT
* **
26031234 ATGGGCCTTCTCCCAATACAGTA
1 GTGGGCCTTAGCCCAATACAGTA
26031257 TCGATACAGT
Statistics
Matches: 147, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 147 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (28 bp):
GTGGGCCTTAGCCCAATACAGTAACAAT
Found at i:26031774 original size:27 final size:27
Alignment explanation
Indices: 26031620--26031785 Score: 224
Period size: 27 Copynumber: 6.1 Consensus size: 27
26031610 TATAACTGTT
* *
26031620 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTAATTCGGTC
* *
26031647 ATTTTACCCTATGGGGGTCATTCAGTC
1 ATTTTACCCTATGGGGGTAATTCGGTC
*
26031674 ATTTTACCCTATGGGGGTAATTCGATC
1 ATTTTACCCTATGGGGGTAATTCGGTC
* * * *
26031701 ATTTTACCTTATGAGGGTAATTCAGTT
1 ATTTTACCCTATGGGGGTAATTCGGTC
*
26031728 ATTTTACCCTGTGGGGGTAATTCGGTC
1 ATTTTACCCTATGGGGGTAATTCGGTC
* *
26031755 ATTTTACCCTGTGGGGGTAATTTGGTC
1 ATTTTACCCTATGGGGGTAATTCGGTC
26031782 ATTT
1 ATTT
26031786 ATTGACCTCT
Statistics
Matches: 121, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTAATTCGGTC
Found at i:26042491 original size:422 final size:422
Alignment explanation
Indices: 26041707--26042554 Score: 1543
Period size: 422 Copynumber: 2.0 Consensus size: 422
26041697 ACATGTCATT
*
26041707 ATATAACCTATGATAGCGTGATGCCTCTTGACTCTGATGGGATTTGTTTCACTTATAGACAGAGA
1 ATATAACCTATGATAGCGTGATGCCTCTTGACTCTGATGGGATTTGTTTCACTTATAGACAAAGA
* *
26041772 TGTTTTCCAACTGAGTTAATTCCGATAATGTTGAAAGCAATACTTAAATATCTGATTAAAATGCT
66 TGGTTTCCAACTGAGTTAATTCCGATAATGTTGAAAGCAATACTCAAATATCTGATTAAAATGCT
26041837 GCTAATGATGAGCTAAATTTCATAAAGGTTAGAGTAGAGGTTCATAATGTTATATTAATAATGAA
131 GCTAATGATGAGCTAAATTTCATAAAGGTTAGAGTAGAGGTTCATAATGTTATATTAATAATGAA
*
26041902 TGTTATGTTTGATGTGTTCACATGAGAATTAAATTTTGTGGCATTACAATCTCCACCCCCTCGTT
196 TGTTATATTTGATGTGTTCACATGAGAATTAAATTTTGTGGCATTACAATCTCCACCCCCTCGTT
*
26041967 CTCAAAATTTTATATAATAGAATTCTATTGTGAAAAGTCCACAAGTGTTAAGCTAAAGAGTTCAA
261 CTCAAAATTTTATATAACAGAATTCTATTGTGAAAAGTCCACAAGTGTTAAGCTAAAGAGTTCAA
*
26042032 CGGATGAATGAGTAATAATGTGGTCATAGTCGAGAGTTAGTTAGAAAATAAACAGATTTCTGAGT
326 CAGATGAATGAGTAATAATGTGGTCATAGTCGAGAGTTAGTTAGAAAATAAACAGATTTCTGAGT
*
26042097 TAGATATTAGATCTTTCTGAAGATTATCTAAG
391 TAGATATTAGATCTTTCTGAAAATTATCTAAG
*
26042129 ATATAACCTGTGATAGCGTGATGCCTCTTGACTCTGATGGGATTTGTTTCACTTATAGACAAAGA
1 ATATAACCTATGATAGCGTGATGCCTCTTGACTCTGATGGGATTTGTTTCACTTATAGACAAAGA
* *
26042194 TGGTTTCCAACTGAGTTAATTCCGATAATGTTGAAAGCAATACTCGAATATCTGATTAAAATGTT
66 TGGTTTCCAACTGAGTTAATTCCGATAATGTTGAAAGCAATACTCAAATATCTGATTAAAATGCT
*
26042259 GCTAATGATGAGCTAAATTTCATAAAGGTTAGAGTAGAGGTTCATAATGTTATGTTAATAATGAA
131 GCTAATGATGAGCTAAATTTCATAAAGGTTAGAGTAGAGGTTCATAATGTTATATTAATAATGAA
* *
26042324 TGTTATATTTGATGTGTTCACATGAGAATTAAATTTTGTGGCATTGCGATCTCCACCCCCTCGTT
196 TGTTATATTTGATGTGTTCACATGAGAATTAAATTTTGTGGCATTACAATCTCCACCCCCTCGTT
* *
26042389 CTCAAAATTTTATATAACAGAATTCTATTGTGAAAAGTCCACAAGTGTTAAGCTAAAGAGTTGAG
261 CTCAAAATTTTATATAACAGAATTCTATTGTGAAAAGTCCACAAGTGTTAAGCTAAAGAGTTCAA
* *
26042454 CAGATGAATGAGTAATAATGTGGTCATAGTCGAGAGTTGGTTAGCAAATAAACAGATTTCTGAGT
326 CAGATGAATGAGTAATAATGTGGTCATAGTCGAGAGTTAGTTAGAAAATAAACAGATTTCTGAGT
26042519 TAGATATTAGATCTTTCTGAAAATTATCTAAG
391 TAGATATTAGATCTTTCTGAAAATTATCTAAG
26042551 ATAT
1 ATAT
26042555 GCAATGTCAA
Statistics
Matches: 409, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
422 409 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35
Consensus pattern (422 bp):
ATATAACCTATGATAGCGTGATGCCTCTTGACTCTGATGGGATTTGTTTCACTTATAGACAAAGA
TGGTTTCCAACTGAGTTAATTCCGATAATGTTGAAAGCAATACTCAAATATCTGATTAAAATGCT
GCTAATGATGAGCTAAATTTCATAAAGGTTAGAGTAGAGGTTCATAATGTTATATTAATAATGAA
TGTTATATTTGATGTGTTCACATGAGAATTAAATTTTGTGGCATTACAATCTCCACCCCCTCGTT
CTCAAAATTTTATATAACAGAATTCTATTGTGAAAAGTCCACAAGTGTTAAGCTAAAGAGTTCAA
CAGATGAATGAGTAATAATGTGGTCATAGTCGAGAGTTAGTTAGAAAATAAACAGATTTCTGAGT
TAGATATTAGATCTTTCTGAAAATTATCTAAG
Found at i:26045296 original size:19 final size:18
Alignment explanation
Indices: 26045274--26045327 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
26045264 TAAATAGAAG
*
26045274 AAAATATCAAAAAAACATA
1 AAAATAACAAAAAAA-ATA
*
26045293 AAAATAACAATAAAAAT-
1 AAAATAACAAAAAAAATA
*
26045310 AAAATAATAAAATAAAAT
1 AAAATAACAAAA-AAAAT
26045328 GAATAGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 10 0.33
18 7 0.23
19 13 0.43
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATAACAAAAAAAATA
Found at i:26045320 original size:14 final size:15
Alignment explanation
Indices: 26045301--26045332 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
26045291 TAAAAATAAC
26045301 AATAAAAATAAAAT-
1 AATAAAAATAAAATG
26045315 AAT-AAAATAAAATG
1 AATAAAAATAAAATG
26045329 AATA
1 AATA
26045333 GATTCAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (15 bp):
AATAAAAATAAAATG
Found at i:26047012 original size:15 final size:15
Alignment explanation
Indices: 26046967--26047014 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
26046957 AAATCGTAAT
26046967 AAATAAGTAACAAATAA
1 AAATAA-TAAC-AATAA
*
26046984 AAATAATAAGAATAA
1 AAATAATAACAATAA
* *
26046999 GAATAATGACAATAA
1 AAATAATAACAATAA
26047014 A
1 A
26047015 GAAAAGAGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 17 0.65
16 3 0.12
17 6 0.23
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.19
Consensus pattern (15 bp):
AAATAATAACAATAA
Found at i:26051191 original size:20 final size:20
Alignment explanation
Indices: 26051158--26051207 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
26051148 CCACTGTCAA
26051158 TCTCTTTTTCCTTTTTTTCAT
1 TCTCTTTTT-CTTTTTTTCAT
*
26051179 TCTCTTTTTC-TTTTTTGAT
1 TCTCTTTTTCTTTTTTTCAT
26051198 T-TCTTTTTCT
1 TCTCTTTTTCT
26051208 GACTTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 8 0.30
19 9 0.33
20 1 0.04
21 9 0.33
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (20 bp):
TCTCTTTTTCTTTTTTTCAT
Found at i:26051205 original size:13 final size:14
Alignment explanation
Indices: 26051185--26051217 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
26051175 TCATTCTCTT
26051185 TTTCTTTTT-TGA-
1 TTTCTTTTTCTGAC
26051197 TTTCTTTTTCTGAC
1 TTTCTTTTTCTGAC
26051211 TTTCTTT
1 TTTCTTT
26051218 CATTACAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
13 3 0.16
14 7 0.37
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (14 bp):
TTTCTTTTTCTGAC
Found at i:26054095 original size:19 final size:19
Alignment explanation
Indices: 26054071--26054111 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
26054061 CTAGAATATT
26054071 TGAGAGAATGAT-GGATGAG
1 TGAGAG-ATGATGGGATGAG
26054090 TGAGAGATGATGGGATGAG
1 TGAGAGATGATGGGATGAG
26054109 TGA
1 TGA
26054112 TGATTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.34, C:0.00, G:0.44, T:0.22
Consensus pattern (19 bp):
TGAGAGATGATGGGATGAG
Found at i:26057733 original size:27 final size:27
Alignment explanation
Indices: 26057694--26057810 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
26057684 AATGGGCCAC
* *
26057694 AAATGACTAAATTACCCCCAAAGGATA
1 AAATGACTGAATTACCCCCAAAGGGTA
* ***
26057721 AAATGAATGAATTACCCTTGAAGGGTA
1 AAATGACTGAATTACCCCCAAAGGGTA
*
26057748 AAATGACCGAATTACCCCCAAAGGGTA
1 AAATGACTGAATTACCCCCAAAGGGTA
** ** *
26057775 AAATGACCCAATTACCCGTATAGGGTA
1 AAATGACTGAATTACCCCCAAAGGGTA
26057802 AAATGACTG
1 AAATGACTG
26057811 TTATACCCCT
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
AAATGACTGAATTACCCCCAAAGGGTA
Found at i:26057819 original size:54 final size:54
Alignment explanation
Indices: 26057694--26057808 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
26057684 AATGGGCCAC
** ** *
26057694 AAATGACTAAATTACCCCCAAAGGATAAAATGAATGAATTACCCTTGAAGGGTA
1 AAATGACCGAATTACCCCCAAAGGATAAAATGAACCAATTACCCGTGAAGGGTA
* *
26057748 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCCAATTACCCGT-ATAGGGTA
1 AAATGACCGAATTACCCCCAAAGGATAAAATGAACCAATTACCCGTGA-AGGGTA
26057802 AAATGAC
1 AAATGAC
26057809 TGTTATACCC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (54 bp):
AAATGACCGAATTACCCCCAAAGGATAAAATGAACCAATTACCCGTGAAGGGTA
Found at i:26058953 original size:54 final size:54
Alignment explanation
Indices: 26058870--26058981 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
26058860 AATGGGTTAC
* * * * * *
26058870 AAATGATCGAATTACCCCCGAAAGATAAAATGACTGAATTACCCCGAAAGAGTA
1 AAATGACCAAATTACCCCCGAAAGATAAAATCACTAAAATACCCCCAAAGAGTA
* * *
26058924 AAATGACCAAATTACCCCCGAAGGGTAAAATCACTAAAATACCCCCAAAGGGTA
1 AAATGACCAAATTACCCCCGAAAGATAAAATCACTAAAATACCCCCAAAGAGTA
26058978 AAAT
1 AAAT
26058982 CACTGTTATA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (54 bp):
AAATGACCAAATTACCCCCGAAAGATAAAATCACTAAAATACCCCCAAAGAGTA
Found at i:26058974 original size:27 final size:27
Alignment explanation
Indices: 26058879--26058985 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 27
26058869 CAAATGATCG
* * *
26058879 AATTACCCCCGAAA-GATAAAATGACTG
1 AATTACCCCC-AAAGGGTAAAATCACTA
* * * *
26058906 AATTACCCCGAAAGAGTAAAATGACCA
1 AATTACCCCCAAAGGGTAAAATCACTA
*
26058933 AATTACCCCCGAAGGGTAAAATCACTA
1 AATTACCCCCAAAGGGTAAAATCACTA
*
26058960 AAATACCCCCAAAGGGTAAAATCACT
1 AATTACCCCCAAAGGGTAAAATCACT
26058986 GTTATACCCC
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.04
27 64 0.96
ACGTcount: A:0.45, C:0.24, G:0.14, T:0.17
Consensus pattern (27 bp):
AATTACCCCCAAAGGGTAAAATCACTA
Found at i:26065993 original size:21 final size:19
Alignment explanation
Indices: 26065959--26065997 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
26065949 ATAGATTTTA
26065959 GTAAAATTAAACATAAATT
1 GTAAAATTAAACATAAATT
26065978 GTAACAATTATAACATAAAT
1 GTAA-AATTA-AACATAAAT
26065998 AAACTAGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (19 bp):
GTAAAATTAAACATAAATT
Found at i:26079547 original size:20 final size:20
Alignment explanation
Indices: 26079413--26079559 Score: 132
Period size: 20 Copynumber: 7.3 Consensus size: 20
26079403 TTGTACGAGA
* *
26079413 TTTGCACTTTAGTGCCTCTA
1 TTTGCACTTTGGTGCCTCTG
*
26079433 TTTGCACTTAGGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
*
26079453 TTTGCACTTTGGTGTCTCTG
1 TTTGCACTTTGGTGCCTCTG
** * *
26079473 TTTGCACTACGGCGTCTCTG
1 TTTGCACTTTGGTGCCTCTG
** *
26079493 TTTGCACTACGGCGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
* ** *
26079513 CTTGCAGATTCGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
* *
26079533 TATGCACTTTGGTGCCCCTG
1 TTTGCACTTTGGTGCCTCTG
26079553 TTATGCA
1 TT-TGCA
26079560 TCTATGATGC
Statistics
Matches: 103, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
20 99 0.96
21 4 0.04
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.39
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTG
Found at i:26082007 original size:30 final size:30
Alignment explanation
Indices: 26081942--26082013 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
26081932 TCGACACGGG
** *
26081942 ATGGCACATGCCCGTGTGGCTCACACTGGCGT
1 ATGGC-CA-GCCCGTGTGGCTCACAAGGGCAT
*
26081974 ATGGCCAGCCCGTGTGGCTCACAAGGGTAT
1 ATGGCCAGCCCGTGTGGCTCACAAGGGCAT
*
26082004 ATGGCTAGCC
1 ATGGCCAGCC
26082014 TATGTGGGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 28 0.80
31 2 0.06
32 5 0.14
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (30 bp):
ATGGCCAGCCCGTGTGGCTCACAAGGGCAT
Found at i:26083893 original size:17 final size:16
Alignment explanation
Indices: 26083855--26083898 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
26083845 ATAAGTCTAA
26083855 GAAAATAAAAAATAAAT
1 GAAAAT-AAAAATAAAT
26083872 GAAAACTAAAAATAAAAT
1 GAAAA-TAAAAAT-AAAT
26083890 -AAAATAAAA
1 GAAAATAAAA
26083899 TAGACTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.20
17 15 0.60
18 5 0.20
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
GAAAATAAAAATAAAT
Found at i:26102703 original size:17 final size:17
Alignment explanation
Indices: 26102683--26102718 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26102673 CTAAGAAAGA
26102683 TTGATTACTAGGCTTAT
1 TTGATTACTAGGCTTAT
26102700 TTGATTACTAGGCTTAT
1 TTGATTACTAGGCTTAT
26102717 TT
1 TT
26102719 AGACTGACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (17 bp):
TTGATTACTAGGCTTAT
Found at i:26111693 original size:128 final size:128
Alignment explanation
Indices: 26111539--26113329 Score: 3372
Period size: 128 Copynumber: 14.0 Consensus size: 128
26111529 ATTCATTGCA
* *
26111539 TAAATTGGAAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTTCGA-GTGTAAGTTTGCTCATA
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAA-TTCCATGTGTAAGTTTGCTCATA
* * * *
26111603 CTTATGTTTAAATTCTAAAATATGTGCTTATGTGTTGCAGAAATGAAAACTAAGATGTGATGCC
65 CTTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26111667 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26111732 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26111795 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26111860 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26111923 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26111988 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112051 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112116 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112179 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112244 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112307 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112372 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112435 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112500 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112563 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112628 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112691 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112756 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26112819 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
26112884 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
* *
26112947 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTGTTCTAAATTCCAAGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
* *
26113012 TTATGTTTAAATTCTGAAATATGTGCTTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
26113075 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
* *
26113140 TTATGTTTAAATTCTGAAATATATGCTTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCA
66 TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
* *
26113203 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCAAAATTTCGA-GTGTAAGTTTGCTCATA
1 TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAA-TTCCATGTGTAAGTTTGCTCATA
* * * *
26113267 CTTAGGTTTAAATTCTGAAACATGTGCTTATGTGTTGC-GAGAATGAAAACTAAGATGTGATGC
65 CTTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGA-AATGAAAACTAAGATGTGATGC
26113330 TATGAAATTT
Statistics
Matches: 1641, Mismatches: 19, Indels: 6
0.98 0.01 0.00
Matches are distributed among these distances:
127 6 0.00
128 1631 0.99
129 4 0.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (128 bp):
TAAATTGGGAAGTTAGTAGTAGCCTAAACCCCTATTCTAAATTCCATGTGTAAGTTTGCTCATAC
TTATGTTTAAATTCTGAAATATATGATTATGTGTTGCGGAAATGAAAACTAAGATGTGATGCC
Found at i:26141842 original size:25 final size:25
Alignment explanation
Indices: 26141782--26141842 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
26141772 TGTATGCCCT
* *
26141782 CATGAGCTGTAAACCAGAATGCTCA
1 CATGAGCTGTGAACCAGAATACTCA
* **
26141807 CACGAGCTGTGAATTAGAATACTCA
1 CATGAGCTGTGAACCAGAATACTCA
26141832 CATGAGCTGTG
1 CATGAGCTGTG
26141843 GAGTATCCGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
CATGAGCTGTGAACCAGAATACTCA
Found at i:26157950 original size:37 final size:37
Alignment explanation
Indices: 26157894--26157972 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26157884 TTATTACGAA
* *
26157894 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
26157931 GTCTTACCCAGG-CAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCC-GGACAAAATCTCCACACGAAGTCATCGG
26157968 GTCTT
1 GTCTT
26157973 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:26158168 original size:47 final size:47
Alignment explanation
Indices: 26158092--26158325 Score: 324
Period size: 47 Copynumber: 5.0 Consensus size: 47
26158082 CTTCGGGACT
* * * * *
26158092 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
26158139 TGTCACATATATACACTTTCACATTCATCACATCGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* ** * *
26158186 TGTCGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
26158233 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
*
26158280 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCC
26158326 ATACTATCAT
Statistics
Matches: 172, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:26159615 original size:85 final size:85
Alignment explanation
Indices: 26159486--26159664 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
26159476 TATTTTATTG
26159486 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26159551 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26159571 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26159636 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26159656 CCCATGCTC
1 CCCATGCTC
26159665 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26163391 original size:15 final size:16
Alignment explanation
Indices: 26163371--26163404 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26163361 TAAATTAAAT
*
26163371 TTTATATTTA-TTTAA
1 TTTATATTAATTTTAA
26163386 TTTATATTAATTTTAA
1 TTTATATTAATTTTAA
26163402 TTT
1 TTT
26163405 TTATAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATATTAATTTTAA
Found at i:26163440 original size:28 final size:30
Alignment explanation
Indices: 26163395--26163450 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
26163385 ATTTATATTA
* *
26163395 ATTTTAATTTTTATAAT-ATAAAAATAAAT
1 ATTTTAATATTTACAATAATAAAAATAAAT
26163424 ATTTT-ATATTTACAATAATAAAAATAA
1 ATTTTAATATTTACAATAATAAAAATAA
26163451 CTTAAAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (30 bp):
ATTTTAATATTTACAATAATAAAAATAAAT
Found at i:26163595 original size:9 final size:9
Alignment explanation
Indices: 26163590--26163622 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
26163580 TTAAAAATTA
26163590 TAAAAAATC
1 TAAAAAATC
26163599 TAAAAAATC
1 TAAAAAATC
26163608 T-AAAAATC
1 TAAAAAATC
*
26163616 CAAAAAA
1 TAAAAAA
26163623 AAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (9 bp):
TAAAAAATC
Found at i:26165985 original size:13 final size:13
Alignment explanation
Indices: 26165969--26165993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26165959 TTATAAAAAA
26165969 TATATATATTAAT
1 TATATATATTAAT
26165982 TATATATATTAA
1 TATATATATTAA
26165994 ATAATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATATATATTAAT
Found at i:26169985 original size:21 final size:22
Alignment explanation
Indices: 26169952--26169992 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26169942 TATATGTGTT
26169952 TTAAATTGTTAA-TTAATAAGA
1 TTAAATTGTTAATTTAATAAGA
26169973 TTAAACTTG-TAATTTAATAA
1 TTAAA-TTGTTAATTTAATAA
26169993 ATAACTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
TTAAATTGTTAATTTAATAAGA
Found at i:26176939 original size:29 final size:29
Alignment explanation
Indices: 26176901--26176960 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
26176891 CAGATCAATT
26176901 ATATCATAAATAAAACCTTCCAATAATCA
1 ATATCATAAATAAAACCTTCCAATAATCA
26176930 ATATCATAAATAAAACCTTCCAATAATCA
1 ATATCATAAATAAAACCTTCCAATAATCA
26176959 AT
1 AT
26176961 CATGTCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.28
Consensus pattern (29 bp):
ATATCATAAATAAAACCTTCCAATAATCA
Found at i:26178824 original size:25 final size:25
Alignment explanation
Indices: 26178796--26178866 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
26178786 TAACTATAAT
26178796 TGCTCACACGAGCTATGAAAACAAA
1 TGCTCACACGAGCTATGAAAACAAA
* **
26178821 TGCTCACATGAGCTATGAAAGTAAA
1 TGCTCACACGAGCTATGAAAACAAA
* *
26178846 TGTTCACACGATCTATGAAAA
1 TGCTCACACGAGCTATGAAAA
26178867 TCAGTCTACT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (25 bp):
TGCTCACACGAGCTATGAAAACAAA
Found at i:26183902 original size:12 final size:12
Alignment explanation
Indices: 26183885--26183912 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26183875 TGATTCCCTC
26183885 AATTTCCTTTAA
1 AATTTCCTTTAA
26183897 AATTTCCTTTAA
1 AATTTCCTTTAA
26183909 AATT
1 AATT
26183913 CCTCTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTTCCTTTAA
Found at i:26189320 original size:6 final size:6
Alignment explanation
Indices: 26189309--26189335 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26189299 TATTGTGTGT
26189309 TCATGG TCATGG TCATGG TCATGG TCA
1 TCATGG TCATGG TCATGG TCATGG TCA
26189336 CAGTTAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.33
Consensus pattern (6 bp):
TCATGG
Found at i:26192805 original size:23 final size:22
Alignment explanation
Indices: 26192739--26192806 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
26192729 GATATTTGTG
* *
26192739 AAGCCTTTGTGGTGTATCTAAT
1 AAGCCTTTGTGGCGTATCTATT
*
26192761 AGAGCCTTTGTGGCATAATCTATT
1 A-AGCCTTTGTGGCGT-ATCTATT
26192785 AAGCCTTTGTGGCGTATTCTAT
1 AAGCCTTTGTGGCGTA-TCTAT
26192807 AACGCCTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
22 2 0.05
23 30 0.77
24 7 0.18
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (22 bp):
AAGCCTTTGTGGCGTATCTATT
Found at i:26194462 original size:7 final size:7
Alignment explanation
Indices: 26194432--26194465 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
26194422 AATATAATTG
26194432 AAATTTA
1 AAATTTA
*
26194439 AAGTTTA
1 AAATTTA
*
26194446 AAGTTTA
1 AAATTTA
26194453 AAATTTA
1 AAATTTA
26194460 AAATTT
1 AAATTT
26194466 GTTATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (7 bp):
AAATTTA
Found at i:26197278 original size:21 final size:20
Alignment explanation
Indices: 26197252--26197300 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
26197242 AGTGTGCAAT
* *
26197252 TTCTCACTGCAGAGAAAGCA
1 TTCTCACTACAGAAAAAGCA
26197272 CTTCTCACTACAGAAAAAGCA
1 -TTCTCACTACAGAAAAAGCA
*
26197293 TTTTCACT
1 TTCTCACT
26197301 TAGATAAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (20 bp):
TTCTCACTACAGAAAAAGCA
Found at i:26198079 original size:38 final size:38
Alignment explanation
Indices: 26198028--26198100 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
26198018 TTTTTTAAAT
*
26198028 GAAAATAAAACATTCATTCATTAATATCTTTGTATTAA
1 GAAAATAAAACATTCATTCATTAATATCTCTGTATTAA
26198066 GAAAATAAAACATTCATTCATTAATATCTCTGTAT
1 GAAAATAAAACATTCATTCATTAATATCTCTGTAT
26198101 ATTTAATAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.38
Consensus pattern (38 bp):
GAAAATAAAACATTCATTCATTAATATCTCTGTATTAA
Found at i:26203437 original size:6 final size:6
Alignment explanation
Indices: 26203426--26203453 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26203416 TATCTTAACA
26203426 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
26203454 CTCTCTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:26204151 original size:17 final size:18
Alignment explanation
Indices: 26204126--26204160 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26204116 CAATTTTGGT
*
26204126 GTGTGGGCC-ACACGGGC
1 GTGTCGGCCAACACGGGC
26204143 GTGTCGGCCAACACGGGC
1 GTGTCGGCCAACACGGGC
26204161 ATGTGGACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.31, G:0.43, T:0.11
Consensus pattern (18 bp):
GTGTCGGCCAACACGGGC
Found at i:26216045 original size:39 final size:39
Alignment explanation
Indices: 26215994--26216138 Score: 182
Period size: 39 Copynumber: 3.7 Consensus size: 39
26215984 TCCTATAAAA
*
26215994 TGATTATATGAGTATTGGGATATATGCTTGAATGTTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTATG
* * * **
26216033 TGATCATATGAGTATTGCGATATGTGCTTGAACATTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTATG
** * *
26216072 CAATTATATGAGTATTATGATATATGCTTAAATGTTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTATG
* *
26216111 TGATTATATGTGTAATGTGATATATGCT
1 TGATTATATGAGTATTGTGATATATGCT
26216139 CAAAAGTGAA
Statistics
Matches: 87, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (39 bp):
TGATTATATGAGTATTGTGATATATGCTTGAATGTTATG
Found at i:26218776 original size:18 final size:17
Alignment explanation
Indices: 26218739--26218791 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
26218729 CCTTCTTTTC
* *
26218739 TTTTCTTTTTATTATAT
1 TTTTCATTTTATTATTT
26218756 TTTTCATTTTATTAATTT
1 TTTTCATTTTATT-ATTT
26218774 TTTTCA-TTTATTATTT
1 TTTTCATTTTATTATTT
26218790 TT
1 TT
26218792 ACTTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
16 6 0.18
17 18 0.55
18 9 0.27
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCATTTTATTATTT
Found at i:26221179 original size:28 final size:28
Alignment explanation
Indices: 26221143--26221218 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
26221133 AAAAACATAT
*
26221143 TTTTTATTTTTAAAATAATTTTAATAA-G
1 TTTTAATTTTT-AAATAATTTTAATAATG
* *
26221171 TTTTAATTTTTTTAAATAATTTTTATAATT
1 TTTTAA--TTTTTAAATAATTTTAATAATG
*
26221201 TTTTAAATTTTAAATAAT
1 TTTTAATTTTTAAATAAT
26221219 AAATTAATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 16 0.39
29 14 0.34
30 11 0.27
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTTAATTTTTAAATAATTTTAATAATG
Found at i:26221194 original size:20 final size:21
Alignment explanation
Indices: 26221161--26221208 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
26221151 TTTAAAATAA
*
26221161 TTTT-AATAAGTTTTA-ATTT
1 TTTTAAATAAGTTTTATAATT
*
26221180 TTTTAAATAATTTTTATAATT
1 TTTTAAATAAGTTTTATAATT
26221201 TTTTAAAT
1 TTTTAAAT
26221209 TTTAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 10 0.40
21 11 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTAAATAAGTTTTATAATT
Found at i:26221211 original size:29 final size:29
Alignment explanation
Indices: 26221141--26221218 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
26221131 TAAAAAACAT
26221141 ATTTTTT--ATTTTTAAAATAATTTTAATA
1 ATTTTTTAAATTTTT-AAATAATTTTAATA
* * *
26221169 A-GTTTTAATTTTTTTAAATAATTTTTATA
1 ATTTTTTAA-ATTTTTAAATAATTTTAATA
26221198 ATTTTTTAAA-TTTTAAATAAT
1 ATTTTTTAAATTTTTAAATAAT
26221219 AAATTAATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
27 4 0.10
28 12 0.29
29 14 0.34
30 11 0.27
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (29 bp):
ATTTTTTAAATTTTTAAATAATTTTAATA
Found at i:26231696 original size:2 final size:2
Alignment explanation
Indices: 26231689--26231729 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
26231679 TAACAAATAA
26231689 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
26231730 GTCATCTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:26238607 original size:24 final size:24
Alignment explanation
Indices: 26238574--26238629 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
26238564 TTAGTGAGTT
* *
26238574 ACACGATCTAGCACACGGCCTGCG
1 ACACGGTCTAGCACACGACCTGCG
26238598 ACACGGTCTAGCACACGACCTGCG
1 ACACGGTCTAGCACACGACCTGCG
*
26238622 ATACGGTC
1 ACACGGTC
26238630 GTGTGACACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.25, C:0.36, G:0.25, T:0.14
Consensus pattern (24 bp):
ACACGGTCTAGCACACGACCTGCG
Found at i:26238688 original size:54 final size:54
Alignment explanation
Indices: 26238598--26238710 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
26238588 ACGGCCTGCG
* * *
26238598 ACACGGTCTAGCACACGACCTGCGATACGGTCGTGTGACACAAGTCAGAGAGTT
1 ACACGGTCTAGCACACGACCTACGACACGCTCGTGTGACACAAGTCAGAGAGTT
* * * *
26238652 ACACGGTCTGGCACACGACCTACGACACGACT-GTGTGACCCAAGTTAGTGAGTT
1 ACACGGTCTAGCACACGACCTACGACACG-CTCGTGTGACACAAGTCAGAGAGTT
26238706 ACACG
1 ACACG
26238711 ATTTAGGACA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (54 bp):
ACACGGTCTAGCACACGACCTACGACACGCTCGTGTGACACAAGTCAGAGAGTT
Found at i:26248980 original size:23 final size:23
Alignment explanation
Indices: 26248953--26248998 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26248943 CTAAAATCAA
26248953 ATTTC-TTTTGGCTTTTCTCTTTT
1 ATTTCATTTT-GCTTTTCTCTTTT
* *
26248976 ATTTCATTTTTCTTTTCTTTTTT
1 ATTTCATTTTGCTTTTCTCTTTT
26248999 GATATATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.07, C:0.15, G:0.04, T:0.74
Consensus pattern (23 bp):
ATTTCATTTTGCTTTTCTCTTTT
Found at i:26252755 original size:18 final size:20
Alignment explanation
Indices: 26252713--26252756 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
26252703 ATCTTAAAAG
26252713 ATAAAA-AAAATTAATAACT
1 ATAAAATAAAATTAATAACT
*
26252732 ACAAAATAAAATT-A-AACT
1 ATAAAATAAAATTAATAACT
26252750 ATAAAAT
1 ATAAAAT
26252757 TTAAAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 10 0.45
19 6 0.27
20 6 0.27
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (20 bp):
ATAAAATAAAATTAATAACT
Found at i:26253400 original size:30 final size:30
Alignment explanation
Indices: 26253364--26253430 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
26253354 AAAAGTGATG
26253364 AAAAATGGTGGAAGATGAAGGAAATAAAAT
1 AAAAATGGTGGAAGATGAAGGAAATAAAAT
26253394 AAAAATGGTGGAAGATGAAGGAAATAAAAT
1 AAAAATGGTGGAAGATGAAGGAAATAAAAT
26253424 AAAAATG
1 AAAAATG
26253431 AAGATAATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.16
Consensus pattern (30 bp):
AAAAATGGTGGAAGATGAAGGAAATAAAAT
Found at i:26260263 original size:56 final size:50
Alignment explanation
Indices: 26260167--26260306 Score: 145
Period size: 56 Copynumber: 2.7 Consensus size: 50
26260157 ATTTGAGTAA
* ** *
26260167 AGAGATCCCATGTAAGACCATGTCAGGGACATGGAATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGAATTGGCA-C--CGA-G--ATG
* **
26260223 AGAGGTCCCATGTAAGACCATGTTTGGGACATTGCTTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGAATTGGCACCGAGATG
**
26260273 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGG
26260307 TAGGGGCACT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
50 34 0.46
52 1 0.01
53 2 0.03
55 1 0.01
56 36 0.49
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTTTGGGACATGGAATTGGCACCGAGATG
Found at i:26260338 original size:50 final size:50
Alignment explanation
Indices: 26260172--26260405 Score: 152
Period size: 50 Copynumber: 4.6 Consensus size: 50
26260162 AGTAAAGAGA
* * * **
26260172 TCCCATGTAAGACCATGTCAGGGACATGGAATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGTAGTGGCA-C--TGA---TATGAGAAC
* * * * * **
26260228 TCCCATGTAAGACCATGTTTGGGACATTGCT-TTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACA-TGGTAGTGGCACTGATATGAGAAC
** * *
26260278 TCCCCCGTAAGACCATGTTTGGGACATGGTAGGGGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGTAGTGGCACTGATATGAGAAC
* * * * * **
26260328 TCTCATGTAAGATCATATCTGGGATATGATAGTGG--CTG-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGTAGTGGCACTGATATGAG-AAC
26260376 ATCCCATGTAAGACCATGTCTGGGACATGG
1 -TCCCATGTAAGACCATGTCTGGGACATGG
26260406 CTTTGGCATG
Statistics
Matches: 143, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
47 4 0.03
48 6 0.04
49 27 0.19
50 71 0.50
53 2 0.01
55 1 0.01
56 30 0.21
57 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGTAGTGGCACTGATATGAGAAC
Found at i:26267859 original size:50 final size:50
Alignment explanation
Indices: 26267748--26267994 Score: 180
Period size: 50 Copynumber: 4.8 Consensus size: 50
26267738 ATTTGTGTAA
* * *
26267748 AGAGATCCCATGTAAGACCATGTCAGGGACATGGTAG-TGGCATCATTGAGGTTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGG-CGTTGGCA-C--CGA-G--ATG
*
26267804 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* ** * * * * *
26267854 AGAGGTCCCCCGTAAGACCATATCTGGGACATGGCATGGGCACCAATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * *
26267904 AGA-ACTCCCATGTAAGACCATATCTGGGATATGACAG-TGGCA--GTACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGC-GTTGGCACCG-AGATG
* * * *
26267953 AAACATCCCATTTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
26267995 TGTTATTATC
Statistics
Matches: 158, Mismatches: 27, Indels: 19
0.77 0.13 0.09
Matches are distributed among these distances:
49 36 0.23
50 80 0.51
52 1 0.01
53 2 0.01
55 2 0.01
56 37 0.23
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Done.