Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 83 of 161
Found at i:26270597 original size:50 final size:52
Alignment explanation
Indices: 26270484--26270637 Score: 204
Period size: 50 Copynumber: 2.9 Consensus size: 52
26270474 ATTTGTGTAA
* *
26270484 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGATCA-G
* * *
26270540 AGAGGTCCCCTGTAGGACCATGTCTGGGACATGGCATGGGCACCGAGA-C-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATCAG
*
26270590 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGA
26270638 AAGACCATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
50 45 0.51
52 1 0.01
53 3 0.03
55 2 0.02
56 38 0.43
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.20
Consensus pattern (52 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATCAG
Found at i:26273153 original size:48 final size:48
Alignment explanation
Indices: 26273097--26273192 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
26273087 TGTTTATATG
*
26273097 GTAAGTTTTATTAATTCAACCGTTGAACTTACTAGGCTCTATTAAAGC
1 GTAAGTTTTATTAATTCAACCGTTGAACTTACTAAGCTCTATTAAAGC
* *
26273145 GTAAGTTTTATTGATTCAACTGTTGAACTTACTAAGCTCTATTAAAGC
1 GTAAGTTTTATTAATTCAACCGTTGAACTTACTAAGCTCTATTAAAGC
26273193 TTACTCATGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (48 bp):
GTAAGTTTTATTAATTCAACCGTTGAACTTACTAAGCTCTATTAAAGC
Found at i:26275678 original size:20 final size:20
Alignment explanation
Indices: 26275653--26275691 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26275643 TGAGTTATTT
26275653 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26275673 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26275692 GAATAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26282214 original size:41 final size:42
Alignment explanation
Indices: 26282164--26282251 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
26282154 AAATAGAATA
* * *
26282164 ACAATAGATCACTAAACCAGAGATTGAATAATAATAGATTCC
1 ACAATAGATCACTAAACCAGAGATTGAACAACAACAGATTCC
* * * *
26282206 ACAA-AGATCATTGAACCAGATATTGAACAACAACATATTCC
1 ACAATAGATCACTAAACCAGAGATTGAACAACAACAGATTCC
26282247 ACAAT
1 ACAAT
26282252 TTTTTGTGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 34 0.89
42 4 0.11
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (42 bp):
ACAATAGATCACTAAACCAGAGATTGAACAACAACAGATTCC
Found at i:26290368 original size:12 final size:12
Alignment explanation
Indices: 26290351--26290375 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26290341 TCGCCAACAT
26290351 ATTTCTTTTGGA
1 ATTTCTTTTGGA
26290363 ATTTCTTTTGGA
1 ATTTCTTTTGGA
26290375 A
1 A
26290376 GAATTCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATTTCTTTTGGA
Found at i:26291240 original size:47 final size:47
Alignment explanation
Indices: 26291171--26291295 Score: 241
Period size: 47 Copynumber: 2.7 Consensus size: 47
26291161 TAAACTTGGT
*
26291171 CTTCCACTGTCTACACTCTTATCACTATTTACATTGCTAAGCTTAGC
1 CTTCCATTGTCTACACTCTTATCACTATTTACATTGCTAAGCTTAGC
26291218 CTTCCATTGTCTACACTCTTATCACTATTTACATTGCTAAGCTTAGC
1 CTTCCATTGTCTACACTCTTATCACTATTTACATTGCTAAGCTTAGC
26291265 CTTCCATTGTCTACACTCTTATCACTATTTA
1 CTTCCATTGTCTACACTCTTATCACTATTTA
26291296 TCTTTTCTAA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.23, C:0.29, G:0.07, T:0.41
Consensus pattern (47 bp):
CTTCCATTGTCTACACTCTTATCACTATTTACATTGCTAAGCTTAGC
Found at i:26293816 original size:13 final size:13
Alignment explanation
Indices: 26293798--26293833 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
26293788 CGCTTCTCGC
26293798 CTTTTTCTTCTTT
1 CTTTTTCTTCTTT
26293811 CTTTTTCTCTCTTT
1 CTTTTTCT-TCTTT
26293825 -TTTTTCTTC
1 CTTTTTCTTC
26293834 AATTTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 15 0.68
14 5 0.23
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (13 bp):
CTTTTTCTTCTTT
Found at i:26294545 original size:19 final size:19
Alignment explanation
Indices: 26294521--26294557 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26294511 ACATTTTTAA
*
26294521 TTTTAATTTTGAAAATAAT
1 TTTTAATTTTAAAAATAAT
26294540 TTTTAATTTTAAAAATAA
1 TTTTAATTTTAAAAATAA
26294558 CATATATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TTTTAATTTTAAAAATAAT
Found at i:26296605 original size:25 final size:25
Alignment explanation
Indices: 26296537--26296897 Score: 177
Period size: 26 Copynumber: 14.3 Consensus size: 25
26296527 GTTTATTTAT
* *
26296537 TTATTTTAAAATCTTTTCATATATTA
1 TTATTTTAAATTATTTT-ATATATTA
* *
26296563 CTTATTTTTAACTATTTTAT-TATTA
1 -TTATTTTAAATTATTTTATATATTA
* *
26296588 CTTATTTTAAGTTTTTTTTCATATATTA
1 -TTATTTTAA-ATTATTTT-ATATATTA
*
26296616 TTATTTTAAATTATTTTATACATTA
1 TTATTTTAAATTATTTTATATATTA
* **
26296641 TTAATTTTAAATTGTTTTATATGGTA
1 TT-ATTTTAAATTATTTTATATATTA
* * * *
26296667 TTCATTTCAAACTGTTTTAT-TGTATA
1 TT-ATTTTAAATTATTTTATATAT-TA
* * *
26296693 TTATTTAAAACTATTATATATATTA
1 TTATTTTAAATTATTTTATATATTA
**
26296718 TTTATTTTAAATTGCTTTATATA-TA
1 -TTATTTTAAATTATTTTATATATTA
* * *
26296743 -T-TTTTGAACTATTTTATATTTTA
1 TTATTTTAAATTATTTTATATATTA
** * **
26296766 TTTATGATAAGTT-TTTTCATATGGT-
1 -TTATTTTAAATTATTTT-ATATATTA
* ** *
26296791 TTATTTTGAACCATTTTGTATATTA
1 TTATTTTAAATTATTTTATATATTA
*
26296816 TTTATTTT-AATTTTTTTCATATATTA
1 -TTATTTTAAATTATTTT-ATATATTA
**
26296842 TTTATTTTAAA-CCTTTT-TATATTA
1 -TTATTTTAAATTATTTTATATATTA
* * *
26296866 TTTACTTTAAATTATTTTTTACA-TA
1 -TTATTTTAAATTATTTTATATATTA
26296891 TTATTTT
1 TTATTTT
26296898 GTTTCGTTTT
Statistics
Matches: 256, Mismatches: 59, Indels: 41
0.72 0.17 0.12
Matches are distributed among these distances:
22 14 0.05
23 3 0.01
24 33 0.13
25 64 0.25
26 110 0.43
27 27 0.11
28 5 0.02
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
TTATTTTAAATTATTTTATATATTA
Found at i:26296648 original size:53 final size:53
Alignment explanation
Indices: 26296550--26296650 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
26296540 TTTTAAAATC
* *
26296550 TTTTCATATATTACTTATTTTTAACTATTTTATTATTACTTATTTTAAGTTTT
1 TTTTCATATATTACTTATTTTAAACTATTTTATCATTACTTATTTTAAGTTTT
*
26296603 TTTTCATATATTA-TTATTTTAAATTATTTTATACATTA-TTAATTTTAA
1 TTTTCATATATTACTTATTTTAAACTATTTTAT-CATTACTT-ATTTTAA
26296651 ATTGTTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
52 19 0.44
53 24 0.56
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (53 bp):
TTTTCATATATTACTTATTTTAAACTATTTTATCATTACTTATTTTAAGTTTT
Found at i:26296807 original size:50 final size:51
Alignment explanation
Indices: 26296744--26296864 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 51
26296734 TTATATATAT
* *
26296744 TTTTGAACTATTTTATATTTTATTTATGATAAGTTTTTTC-ATATGGTTTA
1 TTTTGAACCATTTTATATTTTATTTATGATAAGTTTTTTCAATATGATTTA
* * ** * *
26296794 TTTTGAACCATTTTGTATATTATTTATTTTAATTTTTTTCATATATTATTTA
1 TTTTGAACCATTTTATATTTTATTTATGATAAGTTTTTTCA-ATATGATTTA
* *
26296846 TTTTAAACCTTTTTATATT
1 TTTTGAACCATTTTATATT
26296865 ATTTACTTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 34 0.60
52 23 0.40
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (51 bp):
TTTTGAACCATTTTATATTTTATTTATGATAAGTTTTTTCAATATGATTTA
Found at i:26298278 original size:27 final size:27
Alignment explanation
Indices: 26298248--26298336 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
26298238 GTTTATTTAT
*
26298248 TTATTTTAAAATCTTTTCATATATTAC
1 TTATTTTAAATTCTTTTCATATATTAC
*
26298275 TTATTTTAAATTGTTTT-AT-TATTAC
1 TTATTTTAAATTCTTTTCATATATTAC
* *
26298300 TTATTTTAAGTTTTTTTTCATATATTA-
1 TTATTTTAA-ATTCTTTTCATATATTAC
26298327 TTATTTTAAA
1 TTATTTTAAA
26298337 CTATTTTATA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
25 15 0.28
26 8 0.15
27 26 0.48
28 5 0.09
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (27 bp):
TTATTTTAAATTCTTTTCATATATTAC
Found at i:26298303 original size:25 final size:24
Alignment explanation
Indices: 26298248--26298447 Score: 100
Period size: 25 Copynumber: 7.8 Consensus size: 24
26298238 GTTTATTTAT
* *
26298248 TTATTTTAAAATCTTTTCATATATTA
1 TTATTTTAAATTGTTTT-AT-TATTA
26298274 CTTATTTTAAATTGTTTTATTATTA
1 -TTATTTTAAATTGTTTTATTATTA
* *
26298299 CTTATTTTAAGTTTTTTTTCATATATTA
1 -TTATTTTAA-ATTGTTTT-AT-TATTA
* *
26298327 TTATTTTAAACTATTTTA-TACTTTA
1 TTATTTTAAATTGTTTTATTA--TTA
*
26298352 TTAATGTTAAATT-TTTTA-TATGGTA
1 TT-ATTTTAAATTGTTTTATTAT--TA
* * *
26298377 TTCATTTCAAACTGTTTTATTGTATA
1 TT-ATTTTAAATTGTTTTATTAT-TA
* * **
26298403 TTATTTTAAACTATAATATATATTA
1 TTATTTTAAATTGTTTTAT-TATTA
*
26298428 TTTATTTTAAATTGCTTTAT
1 -TTATTTTAAATTGTTTTAT
26298448 ATATACATTC
Statistics
Matches: 136, Mismatches: 25, Indels: 25
0.73 0.13 0.13
Matches are distributed among these distances:
23 3 0.02
25 54 0.40
26 46 0.34
27 28 0.21
28 5 0.04
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (24 bp):
TTATTTTAAATTGTTTTATTATTA
Found at i:26298367 original size:52 final size:50
Alignment explanation
Indices: 26298239--26298438 Score: 133
Period size: 51 Copynumber: 3.9 Consensus size: 50
26298229 AAATTTGTTG
* * * *
26298239 TTTA-TTTATTTATTTTAAAATCTTTTCATATATTACTTATTTTAAATTGT
1 TTTATTTTA-TTATTTTAAATTTTTTTCATATATTACTTATTTTAAACTAT
*
26298289 TTTATTATTACTTATTTTAAGTTTTTTTTCATATATTA-TTATTTTAAACTAT
1 TTTATT-TTA-TTATTTTAA-ATTTTTTTCATATATTACTTATTTTAAACTAT
* ** * *
26298341 TTTATACTTTATTAATGTTAAA-TTTTTT-ATATGGTA-TTCATTTCAAACTGT
1 TTTAT--TTTATT-ATTTTAAATTTTTTTCATATATTACTT-ATTTTAAACTAT
* * ** *
26298392 TTTATTGTATATTATTTTAAACTATAAT-ATATATTATTTATTTTAAA
1 TTTATT-T-TATTATTTTAAATTTTTTTCATATATTACTTATTTTAAA
26298439 TTGCTTTATA
Statistics
Matches: 120, Mismatches: 19, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
49 1 0.01
50 20 0.17
51 42 0.35
52 33 0.28
53 23 0.19
54 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.59
Consensus pattern (50 bp):
TTTATTTTATTATTTTAAATTTTTTTCATATATTACTTATTTTAAACTAT
Found at i:26298367 original size:53 final size:53
Alignment explanation
Indices: 26298261--26298368 Score: 132
Period size: 53 Copynumber: 2.0 Consensus size: 53
26298251 TTTTAAAATC
* * * *
26298261 TTTTCATATATTACTTATTTTAAATTGTTTTATTATTACTTATTTTAAGTTTT
1 TTTTCATATATTACTTATTTTAAACTATTTTATTATTACTTATGTTAAATTTT
26298314 TTTTCATATATTA-TTATTTTAAACTATTTTA-TACTTTA-TTAATGTTAAATTTT
1 TTTTCATATATTACTTATTTTAAACTATTTTATTA--TTACTT-ATGTTAAATTTT
26298367 TT
1 TT
26298369 ATATGGTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
51 2 0.04
52 18 0.38
53 28 0.58
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (53 bp):
TTTTCATATATTACTTATTTTAAACTATTTTATTATTACTTATGTTAAATTTT
Found at i:26298555 original size:50 final size:49
Alignment explanation
Indices: 26298419--26298556 Score: 129
Period size: 50 Copynumber: 2.8 Consensus size: 49
26298409 TAAACTATAA
* *
26298419 TATATATTATTTATTTTAAATTGCTTT-ATATA-TACATTCGAACCATTT
1 TATATATTATTTATTTTAAATTGTTTTCATATATTA-TTTCGAACCATTT
* * ** * * *
26298467 TACATTTTATTTATGATAAGTT-TTTTCATATGGTTTATTTTGAACCATTT
1 TATATATTATTTATTTTAAATTGTTTTCATAT--ATTATTTCGAACCATTT
*
26298517 TGTATATTATTTATTTTAAATTGGTTTTCATATATTATTT
1 TATATATTATTTATTTTAAATT-GTTTTCATATATTATTT
26298557 ATTTTAAACC
Statistics
Matches: 68, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
47 3 0.04
48 21 0.31
50 33 0.49
51 2 0.03
52 9 0.13
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (49 bp):
TATATATTATTTATTTTAAATTGTTTTCATATATTATTTCGAACCATTT
Found at i:26298570 original size:26 final size:24
Alignment explanation
Indices: 26298500--26298588 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 24
26298490 TTTCATATGG
*
26298500 TTTATTTTGAACCATTTTGTATATTA
1 TTTATTTTAAACC-TTTT-TATATTA
**
26298526 TTTATTTTAAATTGGTTTTCATATATTA
1 TTTATTTTAAA--CCTTTT--TATATTA
26298554 TTTATTTTAAACCTTTTTATATTA
1 TTTATTTTAAACCTTTTTATATTA
* *
26298578 TATACTTTAAA
1 TTTATTTTAAA
26298589 TTATTTTTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
24 16 0.31
26 14 0.27
27 4 0.08
28 18 0.35
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTATTTTAAACCTTTTTATATTA
Found at i:26298577 original size:52 final size:54
Alignment explanation
Indices: 26298500--26298608 Score: 141
Period size: 52 Copynumber: 2.1 Consensus size: 54
26298490 TTTCATATGG
* * * * *
26298500 TTTATTTTGAACCATTTTGTATATTATTTATTTTAAATTGGTTTTCATATATTA
1 TTTATTTTAAACCATTTTGTATATTATATACTTTAAATTAGTTTTCACATATTA
* *
26298554 TTTATTTTAAACC-TTTT-TATATTATATACTTTAAATTATTTTTTACATATTA
1 TTTATTTTAAACCATTTTGTATATTATATACTTTAAATTAGTTTTCACATATTA
26298606 TTT
1 TTT
26298609 TGTTTCGTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
52 32 0.67
53 4 0.08
54 12 0.25
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (54 bp):
TTTATTTTAAACCATTTTGTATATTATATACTTTAAATTAGTTTTCACATATTA
Found at i:26299953 original size:11 final size:11
Alignment explanation
Indices: 26299928--26299973 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
26299918 ACTAATCCTT
*
26299928 TCTCATATTTTC
1 TCTCA-ATTTCC
26299940 TCTCAATTTCC
1 TCTCAATTTCC
*
26299951 TCTTAATTTCC
1 TCTCAATTTCC
*
26299962 TCTTAATTTCC
1 TCTCAATTTCC
26299973 T
1 T
26299974 TCCAAAATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 27 0.84
12 5 0.16
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.54
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:26301178 original size:7 final size:7
Alignment explanation
Indices: 26301166--26301191 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26301156 TAGTCGACTG
26301166 GTATTTA
1 GTATTTA
26301173 GTATTTA
1 GTATTTA
26301180 GTATTTA
1 GTATTTA
26301187 GTATT
1 GTATT
26301192 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:26302223 original size:25 final size:25
Alignment explanation
Indices: 26302192--26302501 Score: 296
Period size: 25 Copynumber: 13.1 Consensus size: 25
26302182 TATTTTGATA
26302192 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
* *** *
26302217 TTTTTTGA-GT--TATTTTA-ATA-
1 TTATTTGATGTAATAAAATAGAAAT
*
26302237 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
*
26302262 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
*
26302287 TTATTTAATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
*
26302312 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
26302337 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
* * * *
26302362 TT-TTTTA-GCT-AT---TTTGATA-
1 TTATTTGATG-TAATAAAATAGAAAT
* *
26302381 TTATTTGATGTGATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
26302406 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
* ** * *
26302431 TT-TTTTA-GT--T-ATGTTGATA-
1 TTATTTGATGTAATAAAATAGAAAT
*
26302450 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
26302475 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
26302500 TT
1 TT
26302502 TTGAATATTT
Statistics
Matches: 227, Mismatches: 39, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
19 4 0.02
20 25 0.11
21 10 0.04
22 4 0.02
23 10 0.04
24 19 0.08
25 155 0.68
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAAT
Found at i:26302423 original size:69 final size:69
Alignment explanation
Indices: 26302192--26302524 Score: 481
Period size: 69 Copynumber: 4.8 Consensus size: 69
26302182 TATTTTGATA
*
26302192 TTATTTGATGTAATAAAATAGAAATTTTTTTGAGTTATTTTAATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAGAAATTTTTTT-AGTTATTTTGATATTATTTGATGTAATAAAATA
26302257 GAAGT
65 GAAGT
* * ** * *
26302262 TTATTTGATGTAATAAAATAGAAGTTTATTTAATGTAATAAAATAGAAATTTATTTGATGTAATA
1 TTATTTGATGTAATAAAATAGAAATTT-TTTTA-GT--T-ATTTTGATA-TTATTTGATGTAATA
26302327 AAATAGAAGT
60 AAATAGAAGT
* *
26302337 TTATTTGATGTAATAAAATAGAAATTTTTTTAGCTATTTTGATATTATTTGATGTGATAAAATAG
1 TTATTTGATGTAATAAAATAGAAATTTTTTTAGTTATTTTGATATTATTTGATGTAATAAAATAG
26302402 AAGT
66 AAGT
*
26302406 TTATTTGATGTAATAAAATAGAAATTTTTTTAGTTATGTTGATATTATTTGATGTAATAAAATAG
1 TTATTTGATGTAATAAAATAGAAATTTTTTTAGTTATTTTGATATTATTTGATGTAATAAAATAG
26302471 AAGT
66 AAGT
* *
26302475 TTATTTGATGTAATAAAATAGAAA-TTTTTGA-ATATTTTGATATTATTTGA
1 TTATTTGATGTAATAAAATAGAAATTTTTTTAGTTATTTTGATATTATTTGA
26302525 GAATTCTACT
Statistics
Matches: 236, Mismatches: 21, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
67 17 0.07
68 6 0.03
69 114 0.48
70 32 0.14
71 6 0.03
73 2 0.01
74 8 0.03
75 51 0.22
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (69 bp):
TTATTTGATGTAATAAAATAGAAATTTTTTTAGTTATTTTGATATTATTTGATGTAATAAAATAG
AAGT
Found at i:26302479 original size:94 final size:98
Alignment explanation
Indices: 26302192--26302501 Score: 292
Period size: 94 Copynumber: 3.3 Consensus size: 98
26302182 TATTTTGATA
* *** *
26302192 TTATTTGATGTAATAAAATAGAAATTTTTTTGA-GT--TATTTTA-ATA-TTATTTGATGTAATA
1 TTATTTGATGTAATAAAATAGAAATTTATTTGATGTAATAAAATAGAAATTTATTTGATGT-ATA
*
26302252 AAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
65 AAATAGAA-ATTATTTGATGTAATAAAATAGAAGT
* *
26302287 TTATTTAATGTAATAAAATAGAAATTTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATA
1 TTATTTGATGTAATAAAATAGAAATTTATTTGATGTAATAAAATAGAAATTTATTTGATGT-ATA
* ** *
26302352 AAATAGAAATT-TTT--T-TAGCT-ATTTTG-A-T
65 AAATAGAAATTATTTGATGTA-ATAAAATAGAAGT
* * *
26302380 ATTATTTGATGTGATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTT-TTTTA-GT-T-
1 -TTATTTGATGTAATAAAATAGAAATTTATTTGATGTAATAAAATAGAAATTTATTTGATGTATA
** * *
26302441 ATGTTGATATTATTTGATGTAATAAAATAGAAGT
65 AAATAGAAATTATTTGATGTAATAAAATAGAAGT
26302475 TTATTTGATGTAATAAAATAGAAATTT
1 TTATTTGATGTAATAAAATAGAAATTT
26302502 TTGAATATTT
Statistics
Matches: 174, Mismatches: 27, Indels: 29
0.76 0.12 0.13
Matches are distributed among these distances:
89 7 0.04
90 4 0.02
92 4 0.02
93 10 0.06
94 75 0.43
95 37 0.21
96 4 0.02
98 7 0.04
99 3 0.02
100 23 0.13
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (98 bp):
TTATTTGATGTAATAAAATAGAAATTTATTTGATGTAATAAAATAGAAATTTATTTGATGTATAA
AATAGAAATTATTTGATGTAATAAAATAGAAGT
Found at i:26302580 original size:23 final size:23
Alignment explanation
Indices: 26302549--26302995 Score: 408
Period size: 23 Copynumber: 19.8 Consensus size: 23
26302539 ATTAATACTC
*
26302549 TTAACTTAAAAATCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
*
26302573 TTAATTAAAAACTCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302596 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
***
26302619 TTAATTAAAAACTAAAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302642 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302665 TTAATTAAAAATCC-AACCTAA-
1 TTAATTAAAAACCCTAACCTAAT
** * *
26302686 -TACCCT-AAAACTCTAACCTTAT
1 TTA-ATTAAAAACCCTAACCTAAT
* *
26302708 TAAATAAAAAAACCCTAACCTAAT
1 TTAAT-TAAAAACCCTAACCTAAT
26302732 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302755 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302778 TTAATTAAAAACCCTAACC---C
1 TTAATTAAAAACCCTAACCTAAT
*
26302798 TTAACCCT-AAAACCCTAACCTAAT
1 TTAA--TTAAAAACCCTAACCTAAT
* *
26302822 TAAATTAAAATCCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
26302845 TTAATTAAAAACCCTAACC---C
1 TTAATTAAAAACCCTAACCTAAT
* *
26302865 TTAACCCT-AAAACCCTAAGCTAAT
1 TTAA--TTAAAAACCCTAACCTAAT
* *
26302889 TAAATTAAAAACCCTAACCTAAA
1 TTAATTAAAAACCCTAACCTAAT
*
26302912 TTAATTAAAAACCCTAACC---C
1 TTAATTAAAAACCCTAACCTAAT
* *
26302932 TTAACCCT-AAAACCCTAAGCTAAT
1 TTAA--TTAAAAACCCTAACCTAAT
* **
26302956 TAAATTAAAAACCCTAA-CT-CG
1 TTAATTAAAAACCCTAACCTAAT
*
26302977 TTACTTAAAAACCCTAACC
1 TTAATTAAAAACCCTAACC
26302996 CTTAACTTAA
Statistics
Matches: 342, Mismatches: 56, Indels: 52
0.76 0.12 0.12
Matches are distributed among these distances:
20 19 0.06
21 56 0.16
22 16 0.05
23 220 0.64
24 31 0.09
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (23 bp):
TTAATTAAAAACCCTAACCTAAT
Found at i:26302734 original size:113 final size:113
Alignment explanation
Indices: 26302580--26302911 Score: 451
Period size: 113 Copynumber: 3.0 Consensus size: 113
26302570 AATTTAATTA
*
26302580 AAAACTCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTAAAACCTAATTAA
1 AAAACTCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCAAAACCTAATTAA
*
26302645 ATTAAAAACCCTAACCTAATTTAATTAAAAATCC-AA-CCTAATACCCT
66 ATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA-ACCCT
* * **
26302692 AAAACTCTAACCTTATTAAATAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTA
1 AAAACTCTAACCTAATTAAAT-TAAAAACCCTAACCTAATTTAATTAAAAACCAAAACCTAATTA
*
26302757 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACCCT
65 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACCCT
* * ** *
26302806 AAAACCCTAACCTAATTAAATTAAAATCCCTAACCTAATTTAATTAAAAACCCTAACC--CTTAA
1 AAAACTCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCAAAACCTAATTAA
** * *
26302869 CCCT-AAAACCCTAAGCTAATTAAATTAAAAACCCTAA-CCTAAA
66 -ATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAA
26302912 TTAATTAAAA
Statistics
Matches: 199, Mismatches: 17, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
110 5 0.03
111 35 0.18
112 21 0.11
113 108 0.54
114 26 0.13
115 4 0.02
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (113 bp):
AAAACTCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCAAAACCTAATTAA
ATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACCCT
Found at i:26302823 original size:67 final size:66
Alignment explanation
Indices: 26302549--26303113 Score: 522
Period size: 67 Copynumber: 8.4 Consensus size: 66
26302539 ATTAATACTC
* * * * *
26302549 TTAACTTAAAAATCCTAACCTAATTTAATTAAAAACTCTAACCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACC--CTTAACTT-AAAACCCTAAC
26302614 CTAA
63 CTAA
* *** * * *
26302618 TTTAATTAAAAACTAAAACCTAATTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAATCC-AA
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACC---CTTAACTT-AAAACCCTAA
26302681 CCTAA
62 CCTAA
*** * * * * *
26302686 -TACCCT-AAAACTCTAACCTTATTAAATAAAAAAACCCTAACCTAATTTAA-TTAAAAACCCTA
1 TTAAATTAAAAACCCTAACCTAATTTAAT-TAAAAACCCTAACC---CTTAACTT-AAAACCCTA
26302748 ACCTAA
61 ACCTAA
*
26302754 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACCCTAAAACCCTAACCT
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-CTTAAAACCCTAACCT
26302819 AA
65 AA
* * *
26302821 TTAAATTAAAATCCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACCCTAAAACCCTAAGCT
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-CTTAAAACCCTAACCT
26302886 AA
65 AA
* * *
26302888 TTAAATTAAAAACCCTAACCTAAATTAATTAAAAACCCTAACCCTTAACCCTAAAACCCTAAGCT
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-CTTAAAACCCTAACCT
26302953 AA
65 AA
** * **
26302955 TTAAATTAAAAACCCTAA-CT-CGTTACTTAAAAACCCTAACCCTTAACTTAAAACCCTAACCCC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACTTAAAACCCTAACCTA
*
26303018 C
66 A
* * * * *
26303019 TTAACTTAAAAACCTTAAACC---CTTAACTTAAAAACCCTTACCCTTAACTTTAAAACCCTAAA
1 TTAAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAACCCTTAAC-TTAAAACCCTAAC
26303081 CTAA
63 CTAA
* *
26303085 GTT-AATTAAAAACCCTAAACTAAGTTAAT
1 -TTAAATTAAAAACCCTAACCTAATTTAAT
26303114 AATTTTACTT
Statistics
Matches: 427, Mismatches: 54, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
64 30 0.07
65 48 0.11
66 49 0.11
67 198 0.46
68 19 0.04
69 60 0.14
70 23 0.05
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.27
Consensus pattern (66 bp):
TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAACTTAAAACCCTAACCTA
A
Found at i:26302828 original size:44 final size:44
Alignment explanation
Indices: 26302573--26303102 Score: 353
Period size: 44 Copynumber: 11.9 Consensus size: 44
26302563 CTAACCTAAT
* *
26302573 TTAA-TTAAAAACTCTAACCTAATTAAATTAAAAACCCTAACCTAAT
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC---C
*** *
26302619 TTAA-TTAAAAACTAAAACCTAATTAAATTAAAAACCCTAACCTAAT
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC---C
* *** * *
26302665 TTAA-TTAAAAATCC-AACCTAA-TACCCT-AAAACTCTAACCTTA
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC--C
* * * *
26302707 TTAAATAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAA
1 TTAACT-TAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC--C
* *
26302754 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCC
* * *
26302798 TTAACCCT-AAAACCCTAACCTAATTAAATTAAAATCCCTAACCTAAT
1 TTAA-CTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC---C
* ** **
26302845 TTAA-TTAAAAACCCTAACC--CTTAACCCT-AAAACCCTAAGCTAA
1 TTAACTTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAA-C-CC
*
26302888 TTAAATTAAAAACCCTAACCTAAATT-AATTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCT-AATTAAATTAAAAACCCTAACCC
* * *
26302932 TTAACCCT-AAAACCCTAAGCTAATTAAATTAAAAACCCTAACTCG
1 TTAA-CTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC-CC
* *
26302977 TT-ACTTAAAAACCCTAACC--CTTAACTT-AAAACCCTAACCCCC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA--CCC
* * * *
26303019 TTAACTTAAAAACCTTAAACC--CTTAACTTAAAAACCCTTACCC
1 TTAACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAACCC
* *
26303062 TTAACTTTAAAACCCTAAACTAAGTT-AATTAAAAACCCTAA
1 TTAACTTAAAAACCCTAACCTAA-TTAAATTAAAAACCCTAA
26303103 ACTAAGTTAA
Statistics
Matches: 398, Mismatches: 56, Indels: 62
0.77 0.11 0.12
Matches are distributed among these distances:
41 10 0.03
42 16 0.04
43 52 0.13
44 144 0.36
45 35 0.09
46 116 0.29
47 25 0.06
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.27
Consensus pattern (44 bp):
TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCC
Found at i:26302942 original size:22 final size:21
Alignment explanation
Indices: 26302912--26303079 Score: 173
Period size: 21 Copynumber: 7.9 Consensus size: 21
26302902 CTAACCTAAA
26302912 TTAA-TTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
* **
26302932 TTAACCCT-AAAACCCTAAGCTAA
1 TTAA-CTTAAAAACCCTAA-C-CC
* *
26302955 TTAAATTAAAAACCCTAACTCG
1 TTAACTTAAAAACCCTAAC-CC
26302977 TT-ACTTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
26302997 TTAACTT-AAAACCCTAACCCCC
1 TTAACTTAAAAACCCTAA--CCC
*
26303019 TTAACTTAAAAACCTTAAACCC
1 TTAACTTAAAAACCCT-AACCC
*
26303041 TTAACTTAAAAACCCTTACCC
1 TTAACTTAAAAACCCTAACCC
*
26303062 TTAACTTTAAAACCCTAA
1 TTAACTTAAAAACCCTAA
26303080 ACTAAGTTAA
Statistics
Matches: 124, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
20 17 0.14
21 49 0.40
22 35 0.28
23 21 0.17
24 2 0.02
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.26
Consensus pattern (21 bp):
TTAACTTAAAAACCCTAACCC
Found at i:26302967 original size:90 final size:89
Alignment explanation
Indices: 26302549--26303102 Score: 390
Period size: 90 Copynumber: 6.2 Consensus size: 89
26302539 ATTAATACTC
* * *
26302549 TTAACTTAAAAATCCTAACCTAATTTAATTAAAAACTCTAACCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACC--ATTTAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-
* ***
26302614 CTAATTTAATTAAAAACTAAAACCTAA
63 CTAATTAAATTAAAAACCCTAACCTAA
* *** *
26302641 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAATCC-AACCTAA-TACCCT-AAAACTCTAAC
1 TTAAATTAAAAACCCTAACC--ATTTAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-
* *
26302703 CTTATTAAATAAAAAAACCCTAACCTAA
63 CTAATTAAAT-TAAAAACCCTAACCTAA
* * *
26302731 TTTAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACC--ATTTAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
** **
26302796 -CCTTAACCCT-AAAACCCTAACCTAA
64 TAATTAA-ATTAAAAACCCTAACCTAA
* * **
26302821 TTAAATTAAAATCCCTAACCTAATTTAATTAAAAACCCTAACC--CTTAACCCT-AAAACCCTAA
1 TTAAATTAAAAACCCTAACC--ATTTAATTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAA
26302883 GCTAATTAAATTAAAAACCCTAACCTAAA
63 -CTAATTAAATTAAAAACCCTAACCT-AA
* * *
26302912 TT-AATTAAAAACCCTAACC-CTTAACCCT-AAAACCCTAAGCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCATTTAA--TTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
** * *
26302974 TCGTT-ACTTAAAAACCCTAACC--C
64 TAATTAAATTAAAAACCCTAACCTAA
* ** * * * *
26302997 TTAACTT-AAAACCCTAACCCCCTTAACTTAAAAACCTTAAACC--CTTAACTTAAAAACCCTTA
1 TTAAATTAAAAACCCTAA-CCATTTAA-TTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAA
** * * *
26303059 C-CCTTAACTTTAAAACCCTAAACTAA
63 CTAATTAAATTAAAAACCCTAACCTAA
26303085 GTT-AATTAAAAACCCTAA
1 -TTAAATTAAAAACCCTAA
26303103 ACTAAGTTAA
Statistics
Matches: 376, Mismatches: 61, Indels: 53
0.77 0.12 0.11
Matches are distributed among these distances:
85 15 0.04
86 39 0.10
87 16 0.04
88 46 0.12
89 39 0.10
90 153 0.41
91 22 0.06
92 37 0.10
93 9 0.02
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.27
Consensus pattern (89 bp):
TTAAATTAAAAACCCTAACCATTTAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACTA
ATTAAATTAAAAACCCTAACCTAA
Found at i:26303098 original size:23 final size:23
Alignment explanation
Indices: 26303070--26303113 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
26303060 CCTTAACTTT
26303070 AAAACCCTAAACTAAGTTAATTA
1 AAAACCCTAAACTAAGTTAATTA
26303093 AAAACCCTAAACTAAGTTAAT
1 AAAACCCTAAACTAAGTTAAT
26303114 AATTTTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.05, T:0.25
Consensus pattern (23 bp):
AAAACCCTAAACTAAGTTAATTA
Found at i:26303349 original size:115 final size:116
Alignment explanation
Indices: 26303109--26303350 Score: 391
Period size: 115 Copynumber: 2.1 Consensus size: 116
26303099 CTAAACTAAG
**
26303109 TTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAATTA
1 TTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTA
26303174 ATAACCCTAACCTAATTTGATAATTTTACTAACCATTAATACAATTTATCAA
66 ATAACCCTAA-CTAATTTGATAATTTTACTAACCATTAATACAATTTATCAA
26303226 TTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATG-TTTTGACTGGTACTAACAATTA
1 TTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTA
***
26303290 ATAATTTTATA-TAATTTGA-AATTTTTACTAACCATTAATACAATTTATCAA
66 ATAACCCTA-ACTAATTTGATAA-TTTTACTAACCATTAATACAATTTATCAA
26303341 TTAATAATTT
1 TTAATAATTT
26303351 CACAAACTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
114 2 0.02
115 47 0.40
116 26 0.22
117 43 0.36
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (116 bp):
TTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTA
ATAACCCTAACTAATTTGATAATTTTACTAACCATTAATACAATTTATCAA
Found at i:26307923 original size:3 final size:3
Alignment explanation
Indices: 26307915--26307974 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
26307905 CATGCTTTAC
26307915 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26307963 ATT ATT ATT ATT
1 ATT ATT ATT ATT
26307975 TTGAAAGGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26321712 original size:51 final size:50
Alignment explanation
Indices: 26321595--26321781 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 50
26321585 ATCATTTGAC
* * * *
26321595 ACACGTAGTAGCCTTCACATAGAACTACACACGTGATCAAACTTTTCGGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCTCGGT
* * *
26321645 TCACGTAGTAGCCTGCATATAGTACTACGCACGTGACCAAAGCCTTCT-GGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA--CTTCTCGGT
* * * * *
26321696 ACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TCTATCGAT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-TCTCGGT
* *
26321747 ACCCGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTG
26321782 TTTATAGGAA
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
49 1 0.01
50 37 0.33
51 70 0.62
52 5 0.04
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCTCGGT
Found at i:26322276 original size:31 final size:31
Alignment explanation
Indices: 26322235--26322329 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
26322225 GGCAAATTAC
*
26322235 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
* *
26322266 AATAGTAATTGAATCCTAATAAAAATCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
*
26322297 AAGAATAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
26322328 AA
1 AA
26322330 ATTATCTAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:26322816 original size:2 final size:2
Alignment explanation
Indices: 26322811--26322836 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26322801 AATATTGTTC
26322811 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26322837 GGGAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26323207 original size:19 final size:20
Alignment explanation
Indices: 26323180--26323225 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
26323170 AAATTTAAAA
*
26323180 TTCATGGTTCAAGTTG-GGG
1 TTCAAGGTTCAAGTTGAGGG
*
26323199 TTCAAGGTTCATGTTGAGGG
1 TTCAAGGTTCAAGTTGAGGG
26323219 TTCAAGG
1 TTCAAGG
26323226 ATTTGGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.20, C:0.11, G:0.35, T:0.35
Consensus pattern (20 bp):
TTCAAGGTTCAAGTTGAGGG
Found at i:26325473 original size:31 final size:31
Alignment explanation
Indices: 26325380--26325475 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
26325370 GGCAAATTAC
*
26325380 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
26325411 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
*
26325443 AAGAATAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
26325474 AA
1 AA
26325476 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 33 0.53
32 29 0.47
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:26327631 original size:98 final size:98
Alignment explanation
Indices: 26327462--26327658 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
26327452 TCTAATCTAA
26327462 TTCGAAAATCTGAATCACAACCTGATTCACACTGAGATCTCTTGACTTGTAATTCACTATCATTC
1 TTCGAAAATCTGAATCACAACCTGATTCACACTGAGATCTCTTGACTTGTAATTCACTATCATTC
26327527 TTCTGAGCTTCACAAATTTGCTGCAAAAATAAC
66 TTCTGAGCTTCACAAATTTGCTGCAAAAATAAC
26327560 TTCGAAAATCTGAATCACAACCTGATTCACACTGAGATCTCTTGACTTGTAATTCACTATCATTC
1 TTCGAAAATCTGAATCACAACCTGATTCACACTGAGATCTCTTGACTTGTAATTCACTATCATTC
*
26327625 TTCTGAGCTTCACAAATTTGCTGCAGAAATAAC
66 TTCTGAGCTTCACAAATTTGCTGCAAAAATAAC
26327658 T
1 T
26327659 GTCTAGCTTT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (98 bp):
TTCGAAAATCTGAATCACAACCTGATTCACACTGAGATCTCTTGACTTGTAATTCACTATCATTC
TTCTGAGCTTCACAAATTTGCTGCAAAAATAAC
Found at i:26332088 original size:36 final size:36
Alignment explanation
Indices: 26332047--26332119 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
26332037 CAATTTTTGG
26332047 TGATTTTTGAAACTAACATCACCTCCAGTGTTTGAA
1 TGATTTTTGAAACTAACATCACCTCCAGTGTTTGAA
26332083 TGATTTTTGAAACTAACATCACCTCCAGTGTTTGAA
1 TGATTTTTGAAACTAACATCACCTCCAGTGTTTGAA
26332119 T
1 T
26332120 CTGTTCTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (36 bp):
TGATTTTTGAAACTAACATCACCTCCAGTGTTTGAA
Found at i:26332402 original size:50 final size:50
Alignment explanation
Indices: 26332338--26332530 Score: 201
Period size: 51 Copynumber: 3.8 Consensus size: 50
26332328 ATTATTATCA
* * *
26332338 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
* * * *
26332388 TTCGGTTCACGTAGTAGCCTGCATATAGTACTACGCACGTGACCAAAGC-C
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CTT
* * * *
26332438 TTCTGGTACACATAATAGCCTGCACATAGTACTACACATGTGACCATTA-TCT
1 TTC-GGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-T
* * * *
26332490 ATCGATACCCGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTG
26332531 TTTATAGGAA
Statistics
Matches: 116, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
50 44 0.38
51 69 0.59
52 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
Found at i:26342922 original size:50 final size:50
Alignment explanation
Indices: 26342862--26343192 Score: 290
Period size: 51 Copynumber: 6.5 Consensus size: 50
26342852 TTCGATACAT
* *
26342862 GTAGTAGCCTTCACATAGTACTACACACGTGATAAAGTTTTACGGTTCAT
1 GTAGTAGCCTTCACATAGTACTACACACGTGACAAAGTTTTACGGTTCAC
26342912 GTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTACGGTTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGA-CAAAGTTTTACGGTTCAC
* *
26342962 GTAGTAGCATTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGA-CAAAG-TTTTACGGTTCAC
* * * * * * * *** *
26343013 ATAGTAGCCTTCACTTACTAATACATATGTGACCATCATTTATCGATTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACAAAGTTTTA-CGGTTCAC
* * * *
26343064 GTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CTGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGA-CAAAG-TTTTACGGTTCAC
* * * * * * *** * * *
26343115 ATTGTAGCATTCACTTAGTACTACACATGTGACCATCATTTATTGATACAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACAAAGTTTTA-CGGTTCAC
*
26343166 GTAGTAGCCTTCACACAGTACTACACA
1 GTAGTAGCCTTCACATAGTACTACACA
26343193 AATGTTCATC
Statistics
Matches: 220, Mismatches: 52, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
49 5 0.02
50 83 0.38
51 124 0.56
52 6 0.03
53 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (50 bp):
GTAGTAGCCTTCACATAGTACTACACACGTGACAAAGTTTTACGGTTCAC
Found at i:26343084 original size:102 final size:102
Alignment explanation
Indices: 26342853--26343192 Score: 425
Period size: 102 Copynumber: 3.4 Consensus size: 102
26342843 CTTTTATCAT
* * * * **
26342853 TCGATACATGTAGTAGCCTTCACATAGTACTACACACGTGA-TAAAG-TTTTACGGTTCATGTAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * * ***
26342916 TAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
26342954 -CGGTTCACGTAGTAGCATTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
* * *
26343018 AGCCTTCACTTACTAATACATATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
26343055 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCTGTACACATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
*
26343120 AGCATTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
*
26343157 TTGATACACGTAGTAGCCTTCACACAGTACTACACA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACA
26343193 AATGTTCATC
Statistics
Matches: 207, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
100 36 0.17
101 42 0.20
102 129 0.62
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:26344707 original size:20 final size:20
Alignment explanation
Indices: 26344682--26344750 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
26344672 AGCATACTTG
26344682 AACATAATTCATATGAATTT
1 AACATAATTCATATGAATTT
* *
26344702 AACATAGATAACCAT-T-ACACTTG
1 AACATA-AT--TCATATGA-A-TTT
26344725 AACATAATTCATATGAATTT
1 AACATAATTCATATGAATTT
26344745 AACATA
1 AACATA
26344751 GATAACCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 17 0.45
21 5 0.13
22 5 0.13
23 11 0.29
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.33
Consensus pattern (20 bp):
AACATAATTCATATGAATTT
Found at i:26344728 original size:23 final size:23
Alignment explanation
Indices: 26344702--26344773 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
26344692 ATATGAATTT
26344702 AACATAGATAACCATTACACTTG
1 AACATAGATAACCATTACACTTG
* *
26344725 AACATA-AT--TCATATGA-A-TTT
1 AACATAGATAACCAT-T-ACACTTG
26344745 AACATAGATAACCATTACACTTG
1 AACATAGATAACCATTACACTTG
26344768 AACATA
1 AACATA
26344774 ATTTAATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 11 0.29
21 5 0.13
22 5 0.13
23 17 0.45
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (23 bp):
AACATAGATAACCATTACACTTG
Found at i:26344788 original size:43 final size:43
Alignment explanation
Indices: 26344677--26344776 Score: 200
Period size: 43 Copynumber: 2.3 Consensus size: 43
26344667 ATGTTAGCAT
26344677 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
1 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
26344720 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
1 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
26344763 ACTTGAACATAATT
1 ACTTGAACATAATT
26344777 TAATTTGATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (43 bp):
ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
Found at i:26346812 original size:9 final size:10
Alignment explanation
Indices: 26346781--26346818 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
26346771 ATAAAAATCG
26346781 AAAACAATATA
1 AAAAC-ATATA
26346792 AAAACATATA
1 AAAACATATA
26346802 AAAACACTA-A
1 AAAACA-TATA
26346812 AAAACAT
1 AAAACAT
26346819 CGTTAAGTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.04
10 18 0.69
11 7 0.27
ACGTcount: A:0.71, C:0.13, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAACATATA
Found at i:26348193 original size:27 final size:27
Alignment explanation
Indices: 26348155--26348210 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
26348145 ATACTTCAAT
*
26348155 TTGGTCATTTTTAATATATTTTTTGAA
1 TTGGTCATTTTTAATATACTTTTTGAA
*
26348182 TTGGTCCA-TTTTAATTTACTTTTTGAA
1 TTGGT-CATTTTTAATATACTTTTTGAA
26348209 TT
1 TT
26348211 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59
Consensus pattern (27 bp):
TTGGTCATTTTTAATATACTTTTTGAA
Found at i:26348630 original size:129 final size:128
Alignment explanation
Indices: 26348466--26348725 Score: 346
Period size: 129 Copynumber: 2.0 Consensus size: 128
26348456 GATAGTATGT
* * * * *
26348466 TTGCCCAATCAAATTTTAGAAATAATAAAATTTAATGAATTAAACAATTACCGTTTAGCTCAT-T
1 TTGCCCAACCAAATTTGAGAAATAATAAAACTTAATAAATTAAACAATTACCGTTT-GCTAATAT
** *
26348530 TGCTAATGATT-AAAATTTTAAAAATATGAGACCAAAAATAACCAAATTAAAGTATAATGACTAA
65 T-AAAAT-ATTAAAAATTTTAAAAATATGAGACCAAAAATAACCAAATTAAAGTACAATGACTAA
26348594 A
128 A
* *
26348595 TTGCCCAACCAAAATTTGA-AAATAATAGAACTTAATAAATTAAACAATTACCGTTTGTTAATGA
1 TTGCCCAACC-AAATTTGAGAAATAATAAAACTTAATAAATTAAACAATTACCGTTTGCTAAT-A
* *
26348659 TTAAAATTTTAAAAATTTTAAAAATATGAGACCAAAAATGACCAAATTAAAGTACAATGACTAAA
64 TTAAAATATTAAAAATTTTAAAAATATGAGACCAAAAATAACCAAATTAAAGTACAATGACTAAA
26348724 TT
1 TT
26348726 CGTAACTTTC
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
128 6 0.05
129 100 0.87
130 9 0.08
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (128 bp):
TTGCCCAACCAAATTTGAGAAATAATAAAACTTAATAAATTAAACAATTACCGTTTGCTAATATT
AAAATATTAAAAATTTTAAAAATATGAGACCAAAAATAACCAAATTAAAGTACAATGACTAAA
Found at i:26353888 original size:18 final size:18
Alignment explanation
Indices: 26353862--26353896 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26353852 ATTTGAGTTG
* *
26353862 ACTCGAATAATTCGATTA
1 ACTCAAATAACTCGATTA
26353880 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
26353897 CATTTTAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:26353919 original size:14 final size:15
Alignment explanation
Indices: 26353887--26353923 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26353877 TTAACTCAAA
*
26353887 TAACTCGATTCATTT
1 TAACTCGATTCAGTT
26353902 TAACTCGATTC-GTT
1 TAACTCGATTCAGTT
26353916 TAACTCGA
1 TAACTCGA
26353924 AATTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (15 bp):
TAACTCGATTCAGTT
Found at i:26375917 original size:18 final size:18
Alignment explanation
Indices: 26375851--26375917 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 18
26375841 CAATATATTT
26375851 AAAATATATAATATACTAAA
1 AAAATATATAA-A-ACTAAA
*** * *
26375871 AGTTTATAT-AAACTTAT
1 AAAATATATAAAACTAAA
26375888 AAAA-ATATAAAACTAAA
1 AAAATATATAAAACTAAA
26375905 AAAATATATAAAA
1 AAAATATATAAAA
26375918 TATTCATAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
16 4 0.11
17 15 0.43
18 9 0.26
19 1 0.03
20 6 0.17
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAATATATAAAACTAAA
Found at i:26375947 original size:19 final size:20
Alignment explanation
Indices: 26375918--26375955 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26375908 ATATATAAAA
26375918 TATTCATAAAAACTTATAAT
1 TATTCATAAAAACTTATAAT
*
26375938 TATT-ATAAAAGCTTATAA
1 TATTCATAAAAACTTATAA
26375956 AAAAAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (20 bp):
TATTCATAAAAACTTATAAT
Found at i:26378605 original size:25 final size:25
Alignment explanation
Indices: 26378577--26378696 Score: 116
Period size: 25 Copynumber: 4.8 Consensus size: 25
26378567 GAAAACTCTT
*
26378577 TGTAACGCCTTTGTGGCGAATATTC
1 TGTAAAGCCTTTGTGGCGAATATTC
* *
26378602 TGTAAAACCTTTGTGGCGAACT-CTC
1 TGTAAAGCCTTTGTGGCGAA-TATTC
* * *
26378627 TATAAGGCCTTTGTGGCGAATATTT
1 TGTAAAGCCTTTGTGGCGAATATTC
*** * * *
26378652 TGTAAATAATTTTTGGTGAATATTT
1 TGTAAAGCCTTTGTGGCGAATATTC
26378677 TGTAAAGCCTTTGTGGCGAA
1 TGTAAAGCCTTTGTGGCGAA
26378697 CTCTCTATAA
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
24 1 0.01
25 71 0.97
26 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (25 bp):
TGTAAAGCCTTTGTGGCGAATATTC
Found at i:26378687 original size:50 final size:50
Alignment explanation
Indices: 26378570--26378696 Score: 141
Period size: 50 Copynumber: 2.5 Consensus size: 50
26378560 CTTTATGGAA
* *
26378570 AACTCTTTGTAACGCCTTTGTGGCGAATATTCTGTAAAACCTTTGTGGCG
1 AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAAACATTTGTGGCG
* * * * * *
26378620 AACTCTCTATAAGGCCTTTGTGGCGAATATTTTGTAAATA-ATTTTTGGTG
1 AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAA-ACATTTGTGGCG
*
26378670 AA-TATTTTGTAAAGCCTTTGTGGCGAA
1 AACT-CTTTGTAAAGCCTTTGTGGCGAA
26378697 CTCTCTATAA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.02
50 62 0.97
51 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (50 bp):
AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAAACATTTGTGGCG
Found at i:26403687 original size:24 final size:24
Alignment explanation
Indices: 26403658--26403742 Score: 125
Period size: 24 Copynumber: 3.5 Consensus size: 24
26403648 TTATCTGTTT
* *
26403658 TGGACAGCATTCATATGCTCAAAC
1 TGGACAGCATTAATATGCTCAAAA
* *
26403682 TTGACATCATTAATATGCTCAAAA
1 TGGACAGCATTAATATGCTCAAAA
26403706 TGGACAGCATTAATATGCTCAAAA
1 TGGACAGCATTAATATGCTCAAAA
*
26403730 TGGATAGCATTAA
1 TGGACAGCATTAA
26403743 AACATGTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (24 bp):
TGGACAGCATTAATATGCTCAAAA
Found at i:26403787 original size:23 final size:23
Alignment explanation
Indices: 26403760--26403807 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
26403750 AAAAACAATC
26403760 GCATTTGAATATCATAGTAACAT
1 GCATTTGAATATCATAGTAACAT
26403783 GCATTTGAATATCATAGTAACAT
1 GCATTTGAATATCATAGTAACAT
26403806 GC
1 GC
26403808 GAAATAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (23 bp):
GCATTTGAATATCATAGTAACAT
Found at i:26404569 original size:41 final size:41
Alignment explanation
Indices: 26404501--26404639 Score: 138
Period size: 41 Copynumber: 3.4 Consensus size: 41
26404491 CAATGTTTCA
* *
26404501 CACACTAATTGCCAATCATATAGCCGAAGCTATTATAATTCTG
1 CACACTAAGTGCC-AT-ACATAGCCGAAGCTATTATAATTCTG
* * *
26404544 CACACTAAGTGCCTTACCTAGCCGAAGCTATTATAATT-TCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATTATAATTCT-G
* * * ** *
26404585 CACACTAAGTGCCATATATAGCCAAATCTATTCGAAATC-G
1 CACACTAAGTGCCATACATAGCCGAAGCTATTATAATTCTG
26404625 CACACTAAGTGCCAT
1 CACACTAAGTGCCAT
26404640 TAATAACCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
40 16 0.20
41 51 0.64
42 1 0.01
43 12 0.15
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (41 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTATAATTCTG
Found at i:26404638 original size:40 final size:41
Alignment explanation
Indices: 26404585--26404661 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 41
26404575 TATAATTTCA
* *
26404585 CACACTAAGTGCCA-TATATAGCCAAATCTAT-TCGAAATCG
1 CACACTAAGTGCCATTA-ATAACCAAAGCTATCTCGAAATCG
26404625 CACACTAAGTGCCATTAATAACCAAAGCTATCTCGAA
1 CACACTAAGTGCCATTAATAACCAAAGCTATCTCGAA
26404662 TTTCATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 26 0.79
41 7 0.21
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.23
Consensus pattern (41 bp):
CACACTAAGTGCCATTAATAACCAAAGCTATCTCGAAATCG
Found at i:26404653 original size:81 final size:84
Alignment explanation
Indices: 26404496--26404655 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 84
26404486 ACACTCAATG
* * * *
26404496 TTTCACACACTAATTGCCAATCATATAGCCGAAGCTATTATAATTCTGCACACTAAGTGCCTTAC
1 TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCCTTAC
* * *
26404561 CTAGCCGAAGCTATTATAA
66 ATAACCAAAGCTATTATAA
* *
26404580 TTTCACACACTAAGTGCC-AT-ATATAGCCAAATCTATTCGAAATC-GCACACTAAGTGCCATTA
1 TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCC-TTA
26404642 -ATAACCAAAGCTAT
65 CATAACCAAAGCTAT
26404656 CTCGAATTTC
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
81 25 0.38
82 22 0.33
83 2 0.03
84 17 0.26
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (84 bp):
TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCCTTAC
ATAACCAAAGCTATTATAA
Found at i:26404664 original size:82 final size:84
Alignment explanation
Indices: 26404496--26404666 Score: 197
Period size: 82 Copynumber: 2.1 Consensus size: 84
26404486 ACACTCAATG
* * * *
26404496 TTTCACACACTAATTGCCAATCATATAGCCGAAGCTATTATAATTCTGCACACTAAGTGCCTTAC
1 TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCCTTAC
* * * *
26404561 CTAGCCGAAGCTATTATAA
66 ATAACCAAAGCTATTAGAA
* *
26404580 TTTCACACACTAAGTGCC-AT-ATATAGCCAAATCTATTCGAAATC-GCACACTAAGTGCCATTA
1 TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCC-TTA
*
26404642 -ATAACCAAAGCTATCTCGAA
65 CATAACCAAAGCTAT-TAGAA
26404662 TTTCA
1 TTTCA
26404667 TAAGTGCTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
81 25 0.34
82 30 0.41
83 2 0.03
84 17 0.23
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (84 bp):
TTTCACACACTAAGTGCCAATCATATAGCCAAAGCTATTAGAAATCTGCACACTAAGTGCCTTAC
ATAACCAAAGCTATTAGAA
Found at i:26407533 original size:26 final size:26
Alignment explanation
Indices: 26407497--26407551 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
26407487 ATCCTATTGT
26407497 CATGATTTTTTAAATGGTGTTAAAAA
1 CATGATTTTTTAAATGGTGTTAAAAA
*
26407523 CATGATTTTTTAAATGGTGTTAAAGA
1 CATGATTTTTTAAATGGTGTTAAAAA
26407549 CAT
1 CAT
26407552 TTCTTGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (26 bp):
CATGATTTTTTAAATGGTGTTAAAAA
Found at i:26410647 original size:26 final size:27
Alignment explanation
Indices: 26410618--26410672 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
26410608 ATAAGGGTGG
*
26410618 TCCTTA-AGAGTGTGCCACGAAGGAAT
1 TCCTTACAGAGTGTGCCACCAAGGAAT
*
26410644 TCCTTACAGAGTTTGCCACCAAGGAAT
1 TCCTTACAGAGTGTGCCACCAAGGAAT
26410671 TC
1 TC
26410673 TTTCATGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (27 bp):
TCCTTACAGAGTGTGCCACCAAGGAAT
Found at i:26413096 original size:54 final size:54
Alignment explanation
Indices: 26413038--26413308 Score: 249
Period size: 54 Copynumber: 5.0 Consensus size: 54
26413028 ATGTACCGAA
* *
26413038 CCGTGTGTCAAACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTTAAC
1 CCGTGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
* ** * *
26413092 CCGTGTGTCACA-TCGTGTAACTCACCAACTTGGTCGACACACCCGTGTCTCAAC
1 CCGTGTGTCAGACT-GTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
* * * * * * *
26413146 CCATGTGCCAGA-TCATGCAACTCACAGACTTGGTCCACATGCCTGTGTCTCAAC
1 CCGTGTGTCAGACT-GTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
* * * * * * * * *
26413200 CCATGTGCCAGACCGTGTAACTCATTGAATTGGTCAATACGCCTGTGTCCCAAC
1 CCGTGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
* * * * **
26413254 CTGTGTGTCAGACCGTGTAACTCACTGACTTGGTCTACATGCTTGTGTCTCAAC
1 CCGTGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
26413308 C
1 C
26413309 AGTTTGAGAC
Statistics
Matches: 178, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 177 0.99
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (54 bp):
CCGTGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAAC
Found at i:26413217 original size:108 final size:108
Alignment explanation
Indices: 26413056--26413308 Score: 283
Period size: 108 Copynumber: 2.3 Consensus size: 108
26413046 CAAACTGTGT
* * * * * *
26413056 AACTCACTGACTTGGTCCACACGCCCGTGTCTTAACCCGTGTGTCACATCGTGTAACTCA-CCAA
1 AACTCACTGACTTGGTCCACATGCCTGTGTCTCAACCCATGTGCCACACCGTGTAACTCATCCAA
* * *
26413120 CTTGGTCGACACACCCGTGTCTCAACCCATGTGCCAGATCATGC
66 -TTGGTCAACACACCCGTGTCCCAACCCATGTGCCAGACCATGC
* * **
26413164 AACTCACAGACTTGGTCCACATGCCTGTGTCTCAACCCATGTGCCAGACCGTGTAACTCATTGAA
1 AACTCACTGACTTGGTCCACATGCCTGTGTCTCAACCCATGTGCCACACCGTGTAACTCATCCAA
* * * ** * * *
26413229 TTGGTCAATACGCCTGTGTCCCAACCTGTGTGTCAGACCGTGT
66 TTGGTCAACACACCCGTGTCCCAACCCATGTGCCAGACCATGC
* *
26413272 AACTCACTGACTTGGTCTACATGCTTGTGTCTCAACC
1 AACTCACTGACTTGGTCCACATGCCTGTGTCTCAACC
26413309 AGTTTGAGAC
Statistics
Matches: 120, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
108 118 0.98
109 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (108 bp):
AACTCACTGACTTGGTCCACATGCCTGTGTCTCAACCCATGTGCCACACCGTGTAACTCATCCAA
TTGGTCAACACACCCGTGTCCCAACCCATGTGCCAGACCATGC
Found at i:26414523 original size:12 final size:12
Alignment explanation
Indices: 26414506--26414530 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26414496 AAGTATCATC
26414506 TTTTTCTTTAAT
1 TTTTTCTTTAAT
26414518 TTTTTCTTTAAT
1 TTTTTCTTTAAT
26414530 T
1 T
26414531 CTTTATTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTAAT
Found at i:26419693 original size:61 final size:61
Alignment explanation
Indices: 26419615--26419745 Score: 156
Period size: 61 Copynumber: 2.1 Consensus size: 61
26419605 TATACATTTA
* * * *
26419615 TATATATATGTGGTTCGAATATAGGT-TACAAATTCATTGAGCTAAATTTAATGTTTTGAAC
1 TATATATATGAGGTTCGAATATA-ATATACAAATTCATTGAGCTAAACTTAATGTTATGAAC
* * * * * *
26419676 TATACATATGAGGTTCGAATGTAATATACAAGTTCTTTGAGCTAAACTTAGTGTTATGAAT
1 TATATATATGAGGTTCGAATATAATATACAAATTCATTGAGCTAAACTTAATGTTATGAAC
26419737 TATATATAT
1 TATATATAT
26419746 TTATTCATGT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 1 0.02
61 57 0.98
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.40
Consensus pattern (61 bp):
TATATATATGAGGTTCGAATATAATATACAAATTCATTGAGCTAAACTTAATGTTATGAAC
Found at i:26419887 original size:41 final size:39
Alignment explanation
Indices: 26419842--26419996 Score: 154
Period size: 41 Copynumber: 3.8 Consensus size: 39
26419832 TATTTGAGTT
*
26419842 ATTCAGGCTCTGTGCTTAGCAGGCTTAATGCCAGTGAAATA
1 ATTCAGACT-TGT-CTTAGCAGGCTTAATGCCAGTGAAATA
26419883 ATTCAGACTT-TACGTCTAGCAGGCTTAATGCCAGTGAAATA
1 ATTCAGACTTGT-C-T-TAGCAGGCTTAATGCCAGTGAAATA
*
26419924 ATTCAGACTTTAAGTC-TAGCAGGCTTAATGCCGGTGAAATA
1 ATTCAGAC-TT--GTCTTAGCAGGCTTAATGCCAGTGAAATA
* *
26419965 TTTTAGACTT-TACGTCTAGCAGGCTTAATGCC
1 ATTCAGACTTGT-C-T-TAGCAGGCTTAATGCC
26419997 GGTGTTCTGA
Statistics
Matches: 99, Mismatches: 5, Indels: 20
0.80 0.04 0.16
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 2 0.02
40 4 0.04
41 87 0.88
42 2 0.02
44 1 0.01
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (39 bp):
ATTCAGACTTGTCTTAGCAGGCTTAATGCCAGTGAAATA
Found at i:26420000 original size:41 final size:41
Alignment explanation
Indices: 26419858--26419996 Score: 242
Period size: 41 Copynumber: 3.4 Consensus size: 41
26419848 GCTCTGTGCT
26419858 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
*
26419899 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTAAGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
* * *
26419940 TAGCAGGCTTAATGCCGGTGAAATATTTTAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
26419981 TAGCAGGCTTAATGCC
1 TAGCAGGCTTAATGCC
26419997 GGTGTTCTGA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 93 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
Found at i:26420017 original size:41 final size:41
Alignment explanation
Indices: 26419858--26420043 Score: 241
Period size: 41 Copynumber: 4.5 Consensus size: 41
26419848 GCTCTGTGCT
* *
26419858 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGTC
*
26419899 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTAAGTC
1 TAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGTC
* * *
26419940 TAGCAGGCTTAATGCCGGTGAAATATTTTAGACTTTACGTC
1 TAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGTC
*** * *
26419981 TAGCAGGCTTAATGCCGGTGTTCTGAA-TCAGGCTTTAAGCC
1 TAGCAGGCTTAATGCCGGTGAAAT-AATTCAGACTTTAAGTC
26420022 TAGCAGGC-TATATGCCGGTGAA
1 TAGCAGGCTTA-ATGCCGGTGAA
26420044 TCATTTTAAA
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 2 0.02
41 125 0.98
42 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGTC
Found at i:26425997 original size:21 final size:23
Alignment explanation
Indices: 26425951--26425998 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
26425941 GAACGAATCC
26425951 AAAATGAAATTGAGAAAAGAAAA
1 AAAATGAAATTGAGAAAAGAAAA
*
26425974 AAAAT-AAATGAGAGAAAAAGAAAA
1 AAAATGAAAT-TGAG-AAAAGAAAA
26425998 A
1 A
26425999 GAGATCGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (23 bp):
AAAATGAAATTGAGAAAAGAAAA
Found at i:26438483 original size:5 final size:5
Alignment explanation
Indices: 26438457--26438523 Score: 107
Period size: 5 Copynumber: 12.8 Consensus size: 5
26438447 TCTAAATAGT
26438457 TTTTA CTTTTA CTTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
26438505 TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
26438524 TGTGTTAACT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
5 44 0.73
6 16 0.27
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:26444753 original size:566 final size:562
Alignment explanation
Indices: 26443676--26444804 Score: 1855
Period size: 566 Copynumber: 2.0 Consensus size: 562
26443666 GAGTATTGTG
* * * *
26443676 ATGAAGAAGCAACTCTATTTTGAATTTCTGTACTAGCTTGAGGAGTCGACTTTGTTGTAGATTCT
1 ATGAAGAAACAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAATCGACTTTGTTGCAGATTCT
** *
26443741 GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTTTAAGAGATAAGTT
66 GGATTAACCTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
* * *
26443806 AGGTAGCATAATAGTTTCATAAAAAACATCTCTGCTAATCACAACTTTTTTATTTTTAAGACACC
131 AGGTAGCATAATAGTTTCATAAAAAACATCTCTACTAATCACAACTTTTCTATTTTCAAGACACC
*
26443871 ATAACTTATACCCTTTTACACTAGCTTTATAACAAAAAAAACACATTTAATGGATCTCAGTTCTA
196 ATAACTTATACACTTTTACACTAGCTTTATAACAAAAAAAACACATTTAATGGATCTCAGTTCTA
* *
26443936 ATTTTCCATTATCAACATGAGCATACGCAGGACACCCAAAGATCTTTAAATAAGAATAATTAGCA
261 ATTTTCCATTATCAACATGAGCATACACAGGACACCCAAAGATCTTTAAATAAGAATAATTAGAA
* * * * * * *
26444001 GGATTACCAGACCATACCTCTTGTGGAGTCTTTTTGTCAATGGCAACTGATGGAGATTGGTTAAT
326 AGATTAACAGACCATACCTCTTATGGAGCCTTTTTGTCAATGGCAACGGATGGAGATCGGTTAAC
* *
26444066 GAAAAAGCATGCAGTAGAGGCTGCTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGACAACA
391 GAAAAAGCATGCAGTAAAGGCTGCTTTGGCCCAAAACGACTTTAGTAAGTTGACATTTGACAACA
*
26444131 TACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAACAACATTTTGCTGT-AGAGT
456 TACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTGA-AGT
* *
26444195 ATGACGAATTGTCAAGTGTCTCACGATCCCTTCTGACTTGCAC
520 ATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
* * *
26444238 ATGAAGAAACAACTCTGTTCTGAATTTTTGTACTGGCTTGAGGAATCGACTTTGTTGCAGATTCT
1 ATGAAGAAACAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAATCGACTTTGTTGCAGATTCT
26444303 GGATTAACCTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
66 GGATTAACCTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
* *
26444368 AGGTAGTATAATAGTTTCATTAAAAACAATATCTCTACTAATCACAACTTTTCTATTTTCAAGAC
131 AGGTAGCATAATAGTTTCA-T-AAAA-AACATCTCTACTAATCACAACTTTTCTATTTTCAAGAC
* * *
26444433 TCTATAACTTATACACTTTTACACTAGCTTTATAACCAAGAAAAACACATTTAATGGATCTCAGT
193 ACCATAACTTATACACTTTTACACTAGCTTTATAA-CAAAAAAAACACATTTAATGGATCTCAGT
*
26444498 TCTAATTTTCCATTATCAACATGAGCATACACAGGACACCCAAAGATTTTTAAATAAGAATAATT
257 TCTAATTTTCCATTATCAACATGAGCATACACAGGACACCCAAAGATCTTTAAATAAGAATAATT
26444563 AGAAAGATTAACAGACCATACCTCTTATGGAGCCTTTTTGTCAATGGCAACGGATGGAGATCGGT
322 AGAAAGATTAACAGACCATACCTCTTATGGAGCCTTTTTGTCAATGGCAACGGATGGAGATCGGT
* * *
26444628 TGACGAAAAAGCATGTAGTAAAGGCTTCTTTGGCCCAAAACGACTTTAGTAAGTTGACATTTGAC
387 TAACGAAAAAGCATGCAGTAAAGGCTGCTTTGGCCCAAAACGACTTTAGTAAGTTGACATTTGAC
* *
26444693 AACATACATTGAACCTTCTCTATGATCATTTTGCTCATTCGTTCTAGAAAAACGTTTTGCTGTGA
452 AACATACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTGA
26444758 AGTATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
517 AGTATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
26444804 A
1 A
26444805 GTTCATTAAA
Statistics
Matches: 523, Mismatches: 39, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
562 138 0.26
563 1 0.00
564 4 0.01
565 66 0.13
566 313 0.60
567 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (562 bp):
ATGAAGAAACAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAATCGACTTTGTTGCAGATTCT
GGATTAACCTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
AGGTAGCATAATAGTTTCATAAAAAACATCTCTACTAATCACAACTTTTCTATTTTCAAGACACC
ATAACTTATACACTTTTACACTAGCTTTATAACAAAAAAAACACATTTAATGGATCTCAGTTCTA
ATTTTCCATTATCAACATGAGCATACACAGGACACCCAAAGATCTTTAAATAAGAATAATTAGAA
AGATTAACAGACCATACCTCTTATGGAGCCTTTTTGTCAATGGCAACGGATGGAGATCGGTTAAC
GAAAAAGCATGCAGTAAAGGCTGCTTTGGCCCAAAACGACTTTAGTAAGTTGACATTTGACAACA
TACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTGAAGTA
TGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
Found at i:26448689 original size:22 final size:21
Alignment explanation
Indices: 26448642--26448686 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26448632 ATGAATTTTT
*
26448642 AAATTTTTTAAAAATATGTTA
1 AAATTTTTTAAAAATATGTAA
*
26448663 TAATTTTTTAAGAAAT-TGTAA
1 AAATTTTTTAA-AAATATGTAA
26448684 AAA
1 AAA
26448687 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (21 bp):
AAATTTTTTAAAAATATGTAA
Found at i:26448694 original size:10 final size:10
Alignment explanation
Indices: 26448675--26448750 Score: 57
Period size: 10 Copynumber: 7.7 Consensus size: 10
26448665 ATTTTTTAAG
*
26448675 AAATTGTAAA
1 AAATTATAAA
26448685 AAATTATAAA
1 AAATTATAAA
*
26448695 AATACTAT-AA
1 AA-ATTATAAA
* * *
26448705 AATTTATTAC
1 AAATTATAAA
*
26448715 AAATTCTAAA
1 AAATTATAAA
* *
26448725 ATATTGTAAA
1 AAATTATAAA
26448735 AAATTAT-AA
1 AAATTATAAA
26448744 AAATTAT
1 AAATTAT
26448751 TAGAATTCAT
Statistics
Matches: 51, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
9 12 0.24
10 35 0.69
11 4 0.08
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (10 bp):
AAATTATAAA
Found at i:26448697 original size:9 final size:9
Alignment explanation
Indices: 26448683--26448764 Score: 56
Period size: 9 Copynumber: 8.4 Consensus size: 9
26448673 AGAAATTGTA
26448683 AAAAATTAT
1 AAAAATTAT
26448692 AAAAATACTAT
1 AAAAAT--TAT
*
26448703 AAAATTTATT
1 AAAAATTA-T
* *
26448713 ACAAATTCT
1 AAAAATTAT
*
26448722 AAAATATTGT
1 AAAA-ATTAT
26448732 AAAAAATTAT
1 -AAAAATTAT
26448742 AAAAATTAT
1 AAAAATTAT
* *
26448751 TAGAATTCAT
1 AAAAATT-AT
26448761 AAAA
1 AAAA
26448765 GATGGTATAA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
9 26 0.46
10 18 0.32
11 12 0.21
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26448735 original size:40 final size:39
Alignment explanation
Indices: 26448675--26448752 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
26448665 ATTTTTTAAG
* *
26448675 AAATTGTAAAAAATTATAAAAATACTATAAAATTTATTAC
1 AAATTCTAAAAAATTATAAAAA-ACTATAAAAATTATTAC
* * *
26448715 AAATTCTAAAATATTGTAAAAAATTATAAAAATTATTA
1 AAATTCTAAAAAATTATAAAAAACTATAAAAATTATTA
26448753 GAATTCATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 14 0.42
40 19 0.58
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (39 bp):
AAATTCTAAAAAATTATAAAAAACTATAAAAATTATTAC
Found at i:26448764 original size:39 final size:39
Alignment explanation
Indices: 26448675--26448780 Score: 106
Period size: 39 Copynumber: 2.7 Consensus size: 39
26448665 ATTTTTTAAG
* * * *
26448675 AAATTGTAAAAAATTATAAAAATACTATAAAATTTATTAC
1 AAATTCTAAAAAATTGTAAAAA-ATTATAAAAATTATTAC
*
26448715 AAATTCTAAAATATTGTAAAAAATTATAAAAATTATTA-
1 AAATTCTAAAAAATTGTAAAAAATTATAAAAATTATTAC
* * * *
26448753 GAATTCATAAAAGATGGTATAAAATTAT
1 AAATTC-TAAAAAATTGTAAAAAATTAT
26448781 TTAAAGTTCT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
38 5 0.09
39 32 0.57
40 19 0.34
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (39 bp):
AAATTCTAAAAAATTGTAAAAAATTATAAAAATTATTAC
Found at i:26449623 original size:28 final size:28
Alignment explanation
Indices: 26449567--26449624 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
26449557 TTTGCAAAAG
* **
26449567 TTTAAAAATATTAAATTTTATATTTTTT
1 TTTAAAAATAGTAAATTTTATATAATTT
26449595 TTTAAAAATAGTAAATTTTAGTA-AATTT
1 TTTAAAAATAGTAAATTTTA-TATAATTT
26449623 TT
1 TT
26449625 ATGTATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
TTTAAAAATAGTAAATTTTATATAATTT
Found at i:26449837 original size:13 final size:13
Alignment explanation
Indices: 26449802--26449839 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
26449792 TTTGGCAATA
26449802 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
26449815 C-TGTGAAAAAGTG
1 CTTTTG-AAAAGTG
26449828 CTTTTGAAAAGT
1 CTTTTGAAAAGT
26449840 TTGATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 3 0.14
13 15 0.71
14 3 0.14
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:26456526 original size:20 final size:21
Alignment explanation
Indices: 26456479--26456530 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
26456469 ACAATATTAT
* *
26456479 ATATAAATATAAATTTATTAA
1 ATATAAAAATAAATTTATCAA
*
26456500 ATA-AAAAATTAATTT-TCAA
1 ATATAAAAATAAATTTATCAA
26456519 ATATAAAAATAA
1 ATATAAAAATAA
26456531 CATAGGAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 6 0.23
20 17 0.65
21 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
ATATAAAAATAAATTTATCAA
Found at i:26463364 original size:13 final size:13
Alignment explanation
Indices: 26463346--26463370 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26463336 AATGGATTTA
26463346 GCCCGGACGGGTG
1 GCCCGGACGGGTG
26463359 GCCCGGACGGGT
1 GCCCGGACGGGT
26463371 AATCTGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.52, T:0.08
Consensus pattern (13 bp):
GCCCGGACGGGTG
Found at i:26466389 original size:30 final size:31
Alignment explanation
Indices: 26466334--26466396 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
26466324 AAAAGGTTAG
26466334 GAACATTCAAGGACCAAATCAAAACAAATCA
1 GAACATTCAAGGACCAAATCAAAACAAATCA
* *
26466365 GAACATTCAGGGA-CAAATCGAAACAAATCA
1 GAACATTCAAGGACCAAATCAAAACAAATCA
26466395 GA
1 GA
26466397 CAAAAAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 18 0.60
31 12 0.40
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (31 bp):
GAACATTCAAGGACCAAATCAAAACAAATCA
Found at i:26467371 original size:34 final size:34
Alignment explanation
Indices: 26467324--26467410 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 34
26467314 ACACGGTTAA
* * *
26467324 CCATCCAGCACACCAGATGA-TCGTATGAGCTAAT
1 CCATCCAGTACACCAAAT-ACTCGTATAAGCTAAT
*
26467358 TCATCCAGTACACCAAATACTCGTATAAGCTAAT
1 CCATCCAGTACACCAAATACTCGTATAAGCTAAT
26467392 CCATCCA-TCACACCAAATA
1 CCATCCAGT-ACACCAAATA
26467411 ACACTGTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 2 0.04
34 44 0.96
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.22
Consensus pattern (34 bp):
CCATCCAGTACACCAAATACTCGTATAAGCTAAT
Found at i:26479699 original size:23 final size:23
Alignment explanation
Indices: 26479670--26479714 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26479660 GTACTTCATA
26479670 AAAATTTAAAAAAATAAAAAATT
1 AAAATTTAAAAAAATAAAAAATT
* *
26479693 AAAATTTAACAAATTAAAAAAT
1 AAAATTTAAAAAAATAAAAAAT
26479715 ATATATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATTTAAAAAAATAAAAAATT
Found at i:26480026 original size:29 final size:30
Alignment explanation
Indices: 26479994--26480051 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
26479984 AATTTAATTC
26479994 AAAATT-TAAAAAATAAATTTGGAAATAAA
1 AAAATTATAAAAAATAAATTTGGAAATAAA
* * * *
26480023 AAAATTATAATAACTTATTTTGGAAATAA
1 AAAATTATAAAAAATAAATTTGGAAATAA
26480052 TTTTTCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (30 bp):
AAAATTATAAAAAATAAATTTGGAAATAAA
Found at i:26480217 original size:11 final size:11
Alignment explanation
Indices: 26480201--26480225 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26480191 GTTAAAATTT
26480201 AAAAATTATAA
1 AAAAATTATAA
26480212 AAAAATTATAA
1 AAAAATTATAA
26480223 AAA
1 AAA
26480226 TGTTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:26480239 original size:20 final size:20
Alignment explanation
Indices: 26480194--26480236 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
26480184 TTAATTTGTT
26480194 AAAATT-TAAAAATTATAAA
1 AAAATTATAAAAATTATAAA
*
26480213 AAAATTATAAAAATGTTTAAA
1 AAAATTATAAAAAT-TATAAA
26480234 AAA
1 AAA
26480237 TTAGAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAATTATAAAAATTATAAA
Found at i:26480497 original size:13 final size:13
Alignment explanation
Indices: 26480461--26480510 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
26480451 TCTTCATTGT
26480461 TTTTGAAAAGTG-
1 TTTTGAAAAGTGA
*
26480473 TTGTGAAAAAGTGA
1 TTTTG-AAAAGTGA
* *
26480487 TTTTGAGAAGTGC
1 TTTTGAAAAGTGA
26480500 TTTTGAAAAGT
1 TTTTGAAAAGT
26480511 TTAGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 4 0.13
13 23 0.74
14 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:26483074 original size:14 final size:13
Alignment explanation
Indices: 26483042--26483079 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
26483032 AAATGTCCCC
26483042 ATTTCTTTTTTTT
1 ATTTCTTTTTTTT
26483055 ATTTCTTTTATTTT
1 ATTTCTTTT-TTTT
26483069 -TCTTCTTTTTT
1 AT-TTCTTTTTT
26483080 CATCTTCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.82
Consensus pattern (13 bp):
ATTTCTTTTTTTT
Found at i:26483953 original size:29 final size:29
Alignment explanation
Indices: 26483906--26483962 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
26483896 TAAGCCCGAA
26483906 TTAAAAAAAACTATAAAAATATTAAAAAG
1 TTAAAAAAAACTATAAAAATATTAAAAAG
*
26483935 TTAAAAAAATAC-ATCAAAATATTAAAAA
1 TTAAAAAAA-ACTATAAAAATATTAAAAA
26483963 AATCAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (29 bp):
TTAAAAAAAACTATAAAAATATTAAAAAG
Found at i:26490015 original size:46 final size:46
Alignment explanation
Indices: 26489932--26490043 Score: 147
Period size: 46 Copynumber: 2.4 Consensus size: 46
26489922 TATTAATAAG
* * *
26489932 TTAAGTCATTTAATTTGTCTACATTTCTATAGCAATTTAAGTTTTC
1 TTAAGTCATTTAATTTGTCTAAATTTCTACAGCAATTTAAGTTGTC
*
26489978 TTAAGTCATTTAATTTGTCTAAATTAT-TACAGGAATTTAAGTTGTC
1 TTAAGTCATTTAATTTGTCTAAATT-TCTACAGCAATTTAAGTTGTC
*
26490024 TTAA-ACAATTTAATTTGTCT
1 TTAAGTC-ATTTAATTTGTCT
26490044 TGTTTACAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
45 1 0.02
46 57 0.97
47 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (46 bp):
TTAAGTCATTTAATTTGTCTAAATTTCTACAGCAATTTAAGTTGTC
Found at i:26496645 original size:46 final size:46
Alignment explanation
Indices: 26496592--26496687 Score: 165
Period size: 46 Copynumber: 2.1 Consensus size: 46
26496582 TATTAATAAG
26496592 TTAAGTCATTTAATTTATCTAAATTACTACAGCAATTTAAGTTGTC
1 TTAAGTCATTTAATTTATCTAAATTACTACAGCAATTTAAGTTGTC
* * *
26496638 TTAAGTCATTTAATTTGTCTAAATTATTACAGGAATTTAAGTTGTC
1 TTAAGTCATTTAATTTATCTAAATTACTACAGCAATTTAAGTTGTC
26496684 TTAA
1 TTAA
26496688 ACTAATTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45
Consensus pattern (46 bp):
TTAAGTCATTTAATTTATCTAAATTACTACAGCAATTTAAGTTGTC
Found at i:26504242 original size:27 final size:26
Alignment explanation
Indices: 26504186--26504336 Score: 115
Period size: 27 Copynumber: 5.6 Consensus size: 26
26504176 AAATTGTACA
* * *
26504186 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAAAT-GACTATG-T
*
26504213 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATGACTATG-T
* * *
26504240 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAAATGACTATG-T
*
26504267 GCACTAAGTGTGCGAGATGGACTATGT
1 GCACTAAGTGTGCGAAAT-GACTATGT
** * *
26504294 GGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGAAATGACTATGT
*
26504321 GGCACTAAATGTGCGA
1 -GCACTAAGTGTGCGA
26504337 GTTGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 78 0.76
28 24 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGACTATGT
Found at i:26504246 original size:54 final size:54
Alignment explanation
Indices: 26504186--26504311 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
26504176 AAATTGTACA
* ** **
26504186 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCGAAATGGAATATG-TG
* *
26504240 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
26504295 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
26504312 TGATTACGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 39 0.63
55 23 0.37
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:26504309 original size:55 final size:54
Alignment explanation
Indices: 26504213--26504362 Score: 160
Period size: 55 Copynumber: 2.8 Consensus size: 54
26504203 CTACTTTGTT
* *
26504213 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
26504267 GCACTAAGTGTGCGAGATGGACTATG-TGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGAT-GAATATGAT-GCACTAAGTGTGCGAATTGACCACGCG
* * * *
26504322 GCACTAAATGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGATGAATATGAT-GCACTAAGTGTGCG
26504363 GACTCAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 37 0.46
55 44 0.54
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
Found at i:26504326 original size:82 final size:81
Alignment explanation
Indices: 26504186--26504341 Score: 188
Period size: 82 Copynumber: 1.9 Consensus size: 81
26504176 AAATTGTACA
* * * * * *
26504186 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
26504251 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
26504267 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAAT
*
26504331 GTGCGAGTTGA
64 GTGCGAATTGA
26504342 TTATATAGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:26504341 original size:27 final size:27
Alignment explanation
Indices: 26504213--26504362 Score: 113
Period size: 27 Copynumber: 5.5 Consensus size: 27
26504203 CTACTTTGTT
** * *
26504213 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTACG-TG
* ** * *
26504240 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* * *
26504267 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTACGTG
*
26504295 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* ** *
26504322 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTACGTG
*
26504349 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26504363 GACTCAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 79 0.77
28 23 0.23
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACGTG
Found at i:26509681 original size:34 final size:34
Alignment explanation
Indices: 26509642--26509707 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
26509632 TCAATCTTAC
*
26509642 TTGGGTTTGAATGTTTTTAGCATGAAAGTGTTAT
1 TTGGGTTTGAATATTTTTAGCATGAAAGTGTTAT
*
26509676 TTGGGTTTGAATATTTTTAGCATGGAAGTGTT
1 TTGGGTTTGAATATTTTTAGCATGAAAGTGTT
26509708 GTTGCGGTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (34 bp):
TTGGGTTTGAATATTTTTAGCATGAAAGTGTTAT
Found at i:26517641 original size:21 final size:19
Alignment explanation
Indices: 26517601--26517644 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
26517591 TTCATCTTTA
* *
26517601 TTTTTTATACTTATCGTAT
1 TTTTTTATACTTAACATAT
26517620 TTTTTTATACTTCAACAATAT
1 TTTTTTATACTT-AAC-ATAT
26517641 TTTT
1 TTTT
26517645 ACTATTTCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 2 0.10
21 7 0.33
ACGTcount: A:0.25, C:0.11, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTTTATACTTAACATAT
Found at i:26522047 original size:16 final size:18
Alignment explanation
Indices: 26522017--26522049 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
26522007 GAAATTTAAG
26522017 AAAAACATAATTAATTTT
1 AAAAACATAATTAATTTT
26522035 AAAAA-ATAA-TAATTT
1 AAAAACATAATTAATTT
26522050 ATCAAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAACATAATTAATTTT
Found at i:26530397 original size:26 final size:26
Alignment explanation
Indices: 26530366--26530422 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
26530356 TCTCATACCT
* *
26530366 ATTTTACCTCTAACAAAATTTTAACG
1 ATTTTACCCCTAACAAAATCTTAACG
**
26530392 ATTTTACCCCTAGTAAAATCTTAACG
1 ATTTTACCCCTAACAAAATCTTAACG
26530418 ATTTT
1 ATTTT
26530423 TCCATTGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAACAAAATCTTAACG
Found at i:26530433 original size:26 final size:26
Alignment explanation
Indices: 26530366--26530436 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
26530356 TCTCATACCT
* ** *
26530366 ATTTTACCTCTAACAAAATTTTAACG
1 ATTTTACCACTAGTAAAATCTTAACG
*
26530392 ATTTTACCCCTAGTAAAATCTTAACG
1 ATTTTACCACTAGTAAAATCTTAACG
* * *
26530418 ATTTTTCCATTGGTAAAAT
1 ATTTTACCACTAGTAAAAT
26530437 TTAGAGAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.39
Consensus pattern (26 bp):
ATTTTACCACTAGTAAAATCTTAACG
Found at i:26537721 original size:21 final size:21
Alignment explanation
Indices: 26537681--26537724 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
26537671 ATTGAAGCTA
*
26537681 TTGGCTCATTACAAGTTGAAG
1 TTGGCTCATTACAAGATGAAG
**
26537702 TTGGCTCATTATGAGATGAAG
1 TTGGCTCATTACAAGATGAAG
26537723 TT
1 TT
26537725 CGAGGCATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.36
Consensus pattern (21 bp):
TTGGCTCATTACAAGATGAAG
Found at i:26539718 original size:16 final size:15
Alignment explanation
Indices: 26539692--26539722 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
26539682 ATATGATATG
26539692 AATTTGTACATTACA
1 AATTTGTACATTACA
26539707 AATTTAGTACATTACA
1 AATTT-GTACATTACA
26539723 TGATTGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTGTACATTACA
Found at i:26543737 original size:18 final size:17
Alignment explanation
Indices: 26543714--26543750 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
26543704 GAATGAGCGT
26543714 TAAGTTTAAGGATACGAG
1 TAAGTTT-AGGATACGAG
*
26543732 TAAGTTTGGGATACGAG
1 TAAGTTTAGGATACGAG
26543749 TA
1 TA
26543751 TTGGGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (17 bp):
TAAGTTTAGGATACGAG
Found at i:26557317 original size:38 final size:38
Alignment explanation
Indices: 26557268--26557343 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
26557258 TTATATAATG
*
26557268 AAGTAACAATTGTGATAATGTAAATATAAATAGCATGA
1 AAGTAAAAATTGTGATAATGTAAATATAAATAGCATGA
26557306 AAGTAAAAATTGTGATAATGTAAATATAAATAGCATGA
1 AAGTAAAAATTGTGATAATGTAAATATAAATAGCATGA
26557344 TCAAGAACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (38 bp):
AAGTAAAAATTGTGATAATGTAAATATAAATAGCATGA
Found at i:26558202 original size:15 final size:14
Alignment explanation
Indices: 26558171--26558201 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26558161 AGACTTAGAC
*
26558171 TTTGTTTTATTATT
1 TTTGGTTTATTATT
26558185 TTTGGTTTATTATT
1 TTTGGTTTATTATT
26558199 TTT
1 TTT
26558202 TTGTGAGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (14 bp):
TTTGGTTTATTATT
Found at i:26562281 original size:18 final size:18
Alignment explanation
Indices: 26562247--26562281 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26562237 ATTTAAATTG
* *
26562247 CGGTCGCAGTCGTGTTTT
1 CGGTCGCAGCCGCGTTTT
26562265 CGGTCGCAGCCGCGTTT
1 CGGTCGCAGCCGCGTTT
26562282 ATCACGGTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.29, G:0.34, T:0.31
Consensus pattern (18 bp):
CGGTCGCAGCCGCGTTTT
Found at i:26568100 original size:3 final size:3
Alignment explanation
Indices: 26568094--26568136 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
26568084 TATTCAGTAA
*
26568094 TAT TAT TAT TAAT CTAT TAT TAT TAA T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26568137 CACCGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 1 0.03
3 29 0.83
4 4 0.11
5 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:26568113 original size:14 final size:14
Alignment explanation
Indices: 26568094--26568132 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
26568084 TATTCAGTAA
26568094 TATTATTATTAATC
1 TATTATTATTAATC
*
26568108 TATTATTATTAATT
1 TATTATTATTAATC
26568122 TATTATTATTA
1 TATTATTATTA
26568133 TTATCACCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATTATTAATC
Found at i:26568116 original size:17 final size:16
Alignment explanation
Indices: 26568094--26568136 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
26568084 TATTCAGTAA
26568094 TATTATTATTAATCTAT
1 TATTATTATTAAT-TAT
*
26568111 TATTATTAATTTATTAT
1 TATTATT-ATTAATTAT
26568128 TATTATTAT
1 TATTATTAT
26568137 CACCGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 2 0.08
17 17 0.71
18 5 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTATTATTAATTAT
Found at i:26568124 original size:11 final size:12
Alignment explanation
Indices: 26568091--26568136 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 12
26568081 TACTATTCAG
26568091 TAATATTATTAT
1 TAATATTATTAT
26568103 TAATCTATTATTAT
1 TAA--TATTATTAT
26568117 TAAT-TTATTAT
1 TAATATTATTAT
*
26568128 TATTATTAT
1 TAATATTAT
26568137 CACCGTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.33
12 8 0.27
14 12 0.40
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (12 bp):
TAATATTATTAT
Found at i:26568175 original size:12 final size:12
Alignment explanation
Indices: 26568093--26568182 Score: 51
Period size: 12 Copynumber: 7.5 Consensus size: 12
26568083 CTATTCAGTA
*
26568093 ATATTATTATTA
1 ATATTATTATTG
*
26568105 ATCTATTATTATTA
1 A--TATTATTATTG
26568119 AT-TTATTATT-
1 ATATTATTATTG
* **
26568129 ATTATTATCACCG
1 A-TATTATTATTG
* * *
26568142 TTATTACTACTG
1 ATATTATTATTG
26568154 ATATTATTATTG
1 ATATTATTATTG
*
26568166 ATATTGTTATT-
1 ATATTATTATTG
26568177 ATATTA
1 ATATTA
26568183 GTTTGTATAT
Statistics
Matches: 61, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
10 1 0.02
11 14 0.23
12 34 0.56
14 12 0.20
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (12 bp):
ATATTATTATTG
Found at i:26570687 original size:14 final size:14
Alignment explanation
Indices: 26570668--26570695 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26570658 ATTTAAGCCC
26570668 CTAATTATTTTTAT
1 CTAATTATTTTTAT
26570682 CTAATTATTTTTAT
1 CTAATTATTTTTAT
26570696 TATTTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (14 bp):
CTAATTATTTTTAT
Found at i:26572777 original size:45 final size:45
Alignment explanation
Indices: 26572713--26572803 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
26572703 TATCTTCCAG
*
26572713 TACCTGAATTACACGCTCAGATTGGCCATCTGTCTGAGGATGAAA
1 TACCTAAATTACACGCTCAGATTGGCCATCTGTCTGAGGATGAAA
26572758 TACCTAAATTACACGCTCAGATTGGCCATCTGTCTGAGGATGAAA
1 TACCTAAATTACACGCTCAGATTGGCCATCTGTCTGAGGATGAAA
26572803 T
1 T
26572804 GCAGTGCTGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (45 bp):
TACCTAAATTACACGCTCAGATTGGCCATCTGTCTGAGGATGAAA
Found at i:26574841 original size:24 final size:24
Alignment explanation
Indices: 26574806--26574851 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26574796 AAAGATTGAA
* *
26574806 GCAAAAACTAAATGAAGAACTTTG
1 GCAAAAAATAAATGAAAAACTTTG
26574830 GCAAAAAATAAATGAAAAACTT
1 GCAAAAAATAAATGAAAAACTT
26574852 CACGCTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.20
Consensus pattern (24 bp):
GCAAAAAATAAATGAAAAACTTTG
Found at i:26587715 original size:41 final size:41
Alignment explanation
Indices: 26587657--26587758 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
26587647 TTATTGTATG
* * *
26587657 AATTGCACATGCGTGCCCCTGTTTGTACTTTAGTACCCCTA
1 AATTGCACATGCATGCCCCTGTTCGTACTTCAGTACCCCTA
* * *
26587698 AATTGCACATGTATGCCCCTGTTCGTACTTCGGTACCCCTG
1 AATTGCACATGCATGCCCCTGTTCGTACTTCAGTACCCCTA
* *
26587739 AATTGCACATACGTGCCCCT
1 AATTGCACATGCATGCCCCT
26587759 ATATACACTC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (41 bp):
AATTGCACATGCATGCCCCTGTTCGTACTTCAGTACCCCTA
Found at i:26589512 original size:21 final size:21
Alignment explanation
Indices: 26589482--26589535 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
26589472 GTTCCATTTG
* *
26589482 GTATCGGTAGAACCCGTCAGA
1 GTATCAGTAGAACCCGTCAAA
*
26589503 GTATCAGTAGAACCTGTCAAA
1 GTATCAGTAGAACCCGTCAAA
26589524 GTATCAGTAGAA
1 GTATCAGTAGAA
26589536 GTGCAGGGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (21 bp):
GTATCAGTAGAACCCGTCAAA
Found at i:26590284 original size:43 final size:42
Alignment explanation
Indices: 26590200--26590289 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 42
26590190 AAAAAAGTTA
26590200 AATTACTTAAATAATAAAAAAAATTATGTTATTTCAATTAAAT
1 AATTACTTAAATAATAAAAAAAATTA-GTTATTTCAATTAAAT
* *
26590243 AATTATTTAAATAATAAATAAAATTA-TT-TTTCATTATTTAAAT
1 AATTACTTAAATAATAAAAAAAATTAGTTATTTCA--A-TTAAAT
26590286 AATT
1 AATT
26590290 TGAAAAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
40 5 0.12
41 2 0.05
42 1 0.02
43 34 0.81
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (42 bp):
AATTACTTAAATAATAAAAAAAATTAGTTATTTCAATTAAAT
Found at i:26590393 original size:20 final size:19
Alignment explanation
Indices: 26590370--26590425 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
26590360 AATTTAGTAC
26590370 TTTTTATATTTTTATAATTT
1 TTTTTATATTTTTA-AATTT
*
26590390 TTTTTGTAATTTTGTAAATTT
1 TTTTTAT-ATTTT-TAAATTT
*
26590411 GTTTTAT-TTTTTAAA
1 TTTTTATATTTTTAAA
26590426 GAAGTTTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 4 0.13
19 4 0.13
20 6 0.19
21 15 0.48
22 2 0.06
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTTATATTTTTAAATTT
Done.